Query 003329
Match_columns 829
No_of_seqs 637 out of 3136
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.2E-30 1.4E-34 263.5 16.3 165 160-326 12-184 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 5.9E-29 2E-33 241.1 19.1 157 164-322 1-166 (166)
3 1fxl_A Paraneoplastic encephal 100.0 1.7E-28 5.9E-33 238.0 19.4 155 162-320 1-167 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-28 5.3E-33 239.3 18.8 155 162-320 2-168 (168)
5 2qfj_A FBP-interacting repress 100.0 3.7E-28 1.3E-32 246.6 18.2 163 162-324 27-206 (216)
6 2adc_A Polypyrimidine tract-bi 100.0 7.7E-28 2.6E-32 249.3 20.6 165 159-323 30-228 (229)
7 1l3k_A Heterogeneous nuclear r 100.0 6.4E-28 2.2E-32 241.1 18.2 167 158-326 8-186 (196)
8 3pgw_A U1-A; protein-RNA compl 100.0 1E-27 3.5E-32 254.5 20.5 164 159-322 5-282 (282)
9 3smz_A Protein raver-1, ribonu 100.0 3E-28 1E-32 259.0 16.1 225 95-330 23-271 (284)
10 1fje_B Nucleolin RBD12, protei 100.0 1.4E-28 5E-33 242.1 12.2 162 159-323 9-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 9.1E-28 3.1E-32 235.1 17.0 154 162-321 3-172 (172)
12 2ghp_A U4/U6 snRNA-associated 100.0 3.1E-28 1E-32 259.9 14.4 221 94-323 41-291 (292)
13 3tyt_A Heterogeneous nuclear r 100.0 1.3E-27 4.6E-32 244.8 17.8 159 162-320 3-204 (205)
14 3smz_A Protein raver-1, ribonu 100.0 2.4E-27 8.3E-32 251.9 20.2 178 161-350 20-210 (284)
15 3nmr_A Cugbp ELAV-like family 99.9 2E-27 6.9E-32 232.6 17.9 157 162-321 2-175 (175)
16 1qm9_A Polypyrimidine tract-bi 99.9 8.9E-28 3E-32 241.8 15.6 162 162-323 2-197 (198)
17 2cjk_A Nuclear polyadenylated 99.9 5.2E-28 1.8E-32 235.7 13.1 155 162-323 2-166 (167)
18 2yh0_A Splicing factor U2AF 65 99.9 2.3E-27 7.9E-32 237.5 17.2 162 162-325 3-196 (198)
19 2ghp_A U4/U6 snRNA-associated 99.9 1.3E-26 4.5E-31 247.2 17.8 182 157-350 35-236 (292)
20 3sde_A Paraspeckle component 1 99.9 2.1E-25 7.3E-30 235.6 17.4 156 160-326 19-182 (261)
21 2i2y_A Fusion protein consists 99.8 2.6E-19 8.9E-24 173.5 11.6 127 197-324 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-18 5.1E-23 169.1 14.8 130 196-325 9-152 (158)
23 4f25_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 162.2 9.9 103 162-264 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.7 2.9E-16 1E-20 142.3 10.0 76 162-237 18-98 (99)
25 3pgw_A U1-A; protein-RNA compl 99.6 4.2E-14 1.4E-18 149.7 26.9 80 246-325 7-92 (282)
26 3lqv_A PRE-mRNA branch site pr 99.6 1.8E-16 6.3E-21 146.3 7.3 103 160-274 5-109 (115)
27 4fxv_A ELAV-like protein 1; RN 99.6 5.3E-16 1.8E-20 140.6 9.7 76 247-322 18-98 (99)
28 2lea_A Serine/arginine-rich sp 99.6 3.9E-16 1.3E-20 149.4 7.4 120 202-326 6-130 (135)
29 2hvz_A Splicing factor, argini 99.6 1.2E-15 4E-20 137.6 9.1 94 164-257 1-100 (101)
30 3s8s_A Histone-lysine N-methyl 99.6 2E-15 6.8E-20 139.6 9.1 82 247-328 5-91 (110)
31 3s8s_A Histone-lysine N-methyl 99.6 3.3E-15 1.1E-19 138.1 10.4 78 160-237 3-85 (110)
32 3r27_A HnRNP L, heterogeneous 99.6 3.4E-15 1.1E-19 136.1 9.6 80 159-239 17-98 (100)
33 1sjq_A Polypyrimidine tract-bi 99.6 5.7E-15 1.9E-19 135.8 11.0 82 159-241 12-95 (105)
34 2lxi_A RNA-binding protein 10; 99.6 9.3E-16 3.2E-20 136.7 5.5 79 163-241 1-86 (91)
35 1whw_A Hypothetical protein ri 99.6 6.6E-15 2.3E-19 132.1 11.1 82 160-241 5-91 (99)
36 4f25_A Polyadenylate-binding p 99.6 3.9E-15 1.3E-19 138.2 9.8 79 248-326 5-86 (115)
37 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-14 4.4E-19 128.2 11.8 81 160-240 5-88 (92)
38 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.2E-15 1.8E-19 145.8 9.7 122 205-326 11-155 (165)
39 2dgs_A DAZ-associated protein 99.6 1.9E-14 6.4E-19 129.3 12.3 82 159-241 6-92 (99)
40 2dnz_A Probable RNA-binding pr 99.6 1.6E-14 5.4E-19 128.4 11.7 81 161-241 3-88 (95)
41 3bs9_A Nucleolysin TIA-1 isofo 99.6 7.5E-15 2.6E-19 128.3 9.3 78 161-238 4-86 (87)
42 1x5u_A Splicing factor 3B subu 99.6 1.4E-14 5E-19 131.2 11.4 83 158-240 10-97 (105)
43 1whw_A Hypothetical protein ri 99.6 1.4E-14 4.8E-19 129.9 11.1 80 246-325 6-90 (99)
44 3md1_A Nuclear and cytoplasmic 99.6 1E-14 3.5E-19 126.3 9.9 77 163-239 1-82 (83)
45 2cph_A RNA binding motif prote 99.6 1.6E-14 5.5E-19 131.2 11.6 83 158-240 10-99 (107)
46 2dnm_A SRP46 splicing factor; 99.6 1.2E-14 4.1E-19 131.4 10.7 84 157-240 7-95 (103)
47 2d9p_A Polyadenylate-binding p 99.6 1.7E-14 5.7E-19 130.5 11.4 83 159-241 11-96 (103)
48 2x1f_A MRNA 3'-END-processing 99.6 1.1E-14 3.7E-19 130.2 10.0 78 162-239 1-83 (96)
49 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-14 4.6E-19 133.8 10.8 102 247-352 7-110 (115)
50 2dgo_A Cytotoxic granule-assoc 99.6 2.2E-14 7.4E-19 132.3 12.2 84 158-241 10-98 (115)
51 2cpf_A RNA binding motif prote 99.6 1.2E-14 4E-19 130.2 10.1 81 161-241 3-91 (98)
52 2cq0_A Eukaryotic translation 99.6 1.2E-14 4.3E-19 131.3 10.3 82 159-240 11-97 (103)
53 2dnh_A Bruno-like 5, RNA bindi 99.5 2.8E-14 9.5E-19 129.3 12.5 82 159-240 11-99 (105)
54 2do4_A Squamous cell carcinoma 99.5 2.4E-14 8.1E-19 128.8 11.9 81 245-325 14-98 (100)
55 2lxi_A RNA-binding protein 10; 99.5 3.1E-15 1.1E-19 133.3 6.0 77 249-325 2-85 (91)
56 2do4_A Squamous cell carcinoma 99.5 1.6E-14 5.3E-19 130.0 10.6 81 159-239 13-97 (100)
57 1x4a_A Splicing factor, argini 99.5 1.9E-14 6.4E-19 131.7 11.3 83 158-240 17-101 (109)
58 1x5u_A Splicing factor 3B subu 99.5 1.9E-14 6.5E-19 130.4 11.2 83 244-326 11-98 (105)
59 2ad9_A Polypyrimidine tract-bi 99.5 1.5E-14 5.2E-19 135.9 10.6 85 157-242 25-111 (119)
60 3tyt_A Heterogeneous nuclear r 99.5 1.7E-14 5.9E-19 147.4 12.0 104 247-350 3-148 (205)
61 1wex_A Hypothetical protein (r 99.5 2E-14 6.8E-19 131.8 11.2 81 158-239 10-92 (104)
62 2cpz_A CUG triplet repeat RNA- 99.5 1.4E-14 4.6E-19 133.9 10.1 85 157-241 19-108 (115)
63 1p27_B RNA-binding protein 8A; 99.5 1.4E-14 4.8E-19 131.5 10.1 81 159-239 19-104 (106)
64 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.4E-14 8.2E-19 129.5 11.5 82 159-240 11-95 (103)
65 3md3_A Nuclear and cytoplasmic 99.5 6.3E-15 2.2E-19 142.2 8.1 123 114-236 12-165 (166)
66 2cq3_A RNA-binding protein 9; 99.5 3.3E-14 1.1E-18 128.6 12.3 84 158-241 10-96 (103)
67 2dnq_A RNA-binding protein 4B; 99.5 2.7E-14 9.1E-19 126.1 11.3 79 160-241 5-83 (90)
68 2cph_A RNA binding motif prote 99.5 2.9E-14 1E-18 129.5 11.8 82 244-325 11-99 (107)
69 2d9p_A Polyadenylate-binding p 99.5 2.6E-14 8.7E-19 129.3 11.3 83 244-326 11-96 (103)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.5E-14 5E-19 125.9 9.3 77 160-236 4-85 (85)
71 1x5s_A Cold-inducible RNA-bind 99.5 1.8E-14 6.2E-19 129.9 10.2 82 159-240 8-94 (102)
72 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.6E-14 5.6E-19 126.1 9.6 77 247-323 5-86 (87)
73 1fxl_A Paraneoplastic encephal 99.5 2.9E-14 1E-18 137.6 12.3 103 248-350 2-113 (167)
74 1sjq_A Polypyrimidine tract-bi 99.5 1E-14 3.5E-19 134.1 8.5 79 247-326 15-95 (105)
75 2jrs_A RNA-binding protein 39; 99.5 2.2E-14 7.4E-19 131.8 10.8 83 157-239 20-107 (108)
76 1x4a_A Splicing factor, argini 99.5 3.1E-14 1.1E-18 130.2 11.8 81 245-325 19-101 (109)
77 2dhg_A TRNA selenocysteine ass 99.5 3.5E-14 1.2E-18 128.4 11.8 82 159-240 5-92 (104)
78 3md1_A Nuclear and cytoplasmic 99.5 2.2E-14 7.6E-19 124.1 10.0 76 249-324 2-82 (83)
79 2cq0_A Eukaryotic translation 99.5 2.4E-14 8.2E-19 129.5 10.6 83 244-326 11-98 (103)
80 1x4h_A RNA-binding protein 28; 99.5 3.1E-14 1E-18 130.2 11.4 84 158-241 10-104 (111)
81 1x4d_A Matrin 3; structural ge 99.5 1.3E-14 4.5E-19 132.6 8.9 80 159-239 11-93 (102)
82 2cq1_A PTB-like protein L; RRM 99.5 2.7E-14 9.2E-19 130.3 10.9 82 158-240 10-93 (101)
83 3r27_A HnRNP L, heterogeneous 99.5 1.8E-14 6.2E-19 131.3 9.7 77 247-324 20-98 (100)
84 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.6E-14 1.2E-18 128.3 11.6 83 245-327 12-97 (103)
85 2cqc_A Arginine/serine-rich sp 99.5 3.3E-14 1.1E-18 126.2 11.0 78 245-322 12-94 (95)
86 3pgw_S U1-70K; protein-RNA com 99.5 5.2E-15 1.8E-19 167.9 7.2 146 179-324 8-183 (437)
87 1why_A Hypothetical protein ri 99.5 3E-14 1E-18 127.6 10.6 79 160-239 14-94 (97)
88 2dgo_A Cytotoxic granule-assoc 99.5 4.3E-14 1.5E-18 130.4 11.9 82 245-326 12-98 (115)
89 2cqc_A Arginine/serine-rich sp 99.5 2E-14 6.9E-19 127.6 9.3 80 158-237 10-94 (95)
90 2lkz_A RNA-binding protein 5; 99.5 6.4E-15 2.2E-19 132.9 6.1 75 248-322 9-94 (95)
91 1x5t_A Splicing factor 3B subu 99.5 1.4E-14 4.7E-19 129.1 8.2 81 161-241 3-89 (96)
92 2e5h_A Zinc finger CCHC-type a 99.5 2E-14 6.8E-19 127.5 9.1 78 159-236 12-94 (94)
93 2cpz_A CUG triplet repeat RNA- 99.5 2.5E-14 8.6E-19 132.1 10.2 81 246-326 23-108 (115)
94 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.6E-19 128.2 8.4 73 248-321 7-79 (89)
95 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.9E-14 1E-18 124.0 9.9 75 247-321 6-85 (85)
96 2dgt_A RNA-binding protein 30; 99.5 2.7E-14 9.3E-19 126.6 9.9 81 157-240 4-84 (92)
97 2dgs_A DAZ-associated protein 99.5 4.1E-14 1.4E-18 127.0 11.1 81 245-326 7-92 (99)
98 2x1f_A MRNA 3'-END-processing 99.5 3.5E-14 1.2E-18 126.9 10.5 78 248-325 2-84 (96)
99 2ywk_A Putative RNA-binding pr 99.5 2.5E-14 8.4E-19 127.2 9.4 79 158-236 11-93 (95)
100 2la4_A Nuclear and cytoplasmic 99.5 1.9E-14 6.5E-19 129.7 8.8 77 161-238 25-101 (101)
101 4a8x_A RNA-binding protein wit 99.5 2.7E-14 9.2E-19 124.8 9.5 79 247-325 3-87 (88)
102 2dgp_A Bruno-like 4, RNA bindi 99.5 3.2E-14 1.1E-18 129.2 10.3 82 159-240 9-98 (106)
103 2cpx_A Hypothetical protein FL 99.5 3.2E-14 1.1E-18 131.1 10.4 83 158-240 20-107 (115)
104 2dnz_A Probable RNA-binding pr 99.5 4E-14 1.4E-18 125.8 10.7 79 247-325 4-87 (95)
105 2kxn_B Transformer-2 protein h 99.5 3.4E-14 1.2E-18 134.9 10.7 83 157-239 40-127 (129)
106 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-14 6.6E-19 129.7 8.5 83 159-241 8-95 (102)
107 2cpf_A RNA binding motif prote 99.5 2.7E-14 9.3E-19 127.8 9.5 79 247-325 4-90 (98)
108 2jvr_A Nucleolar protein 3; RN 99.5 1.9E-14 6.5E-19 133.5 8.7 89 229-324 16-106 (111)
109 3p5t_L Cleavage and polyadenyl 99.5 9.6E-15 3.3E-19 129.3 6.4 77 164-240 2-85 (90)
110 1wf1_A RNA-binding protein RAL 99.5 2.7E-14 9.3E-19 130.9 9.6 96 226-325 6-102 (110)
111 2cq1_A PTB-like protein L; RRM 99.5 6.2E-14 2.1E-18 127.9 11.8 80 246-326 13-94 (101)
112 2dnh_A Bruno-like 5, RNA bindi 99.5 5.5E-14 1.9E-18 127.4 11.4 82 246-327 13-101 (105)
113 2div_A TRNA selenocysteine ass 99.5 2.9E-14 1E-18 127.8 9.5 81 159-239 5-95 (99)
114 1x4h_A RNA-binding protein 28; 99.5 7E-14 2.4E-18 127.8 12.1 81 246-326 13-104 (111)
115 2dnq_A RNA-binding protein 4B; 99.5 3.9E-14 1.3E-18 125.0 10.1 77 246-325 6-82 (90)
116 1l3k_A Heterogeneous nuclear r 99.5 1.4E-14 5E-19 144.1 8.2 138 95-241 14-186 (196)
117 2lkz_A RNA-binding protein 5; 99.5 1.1E-14 3.9E-19 131.2 6.7 78 160-237 6-94 (95)
118 1why_A Hypothetical protein ri 99.5 5.7E-14 1.9E-18 125.8 11.2 78 247-325 16-95 (97)
119 2e5h_A Zinc finger CCHC-type a 99.5 6.2E-14 2.1E-18 124.3 11.3 76 246-321 14-94 (94)
120 2dgx_A KIAA0430 protein; RRM d 99.5 4.4E-14 1.5E-18 126.6 10.4 79 247-325 8-92 (96)
121 4f02_A Polyadenylate-binding p 99.5 4.5E-14 1.5E-18 144.3 11.9 105 246-350 13-128 (213)
122 1oo0_B CG8781-PA, drosophila Y 99.5 3.2E-14 1.1E-18 130.2 9.7 81 159-239 22-107 (110)
123 1wi8_A EIF-4B, eukaryotic tran 99.5 3.7E-14 1.3E-18 128.6 10.0 82 157-240 9-96 (104)
124 2wbr_A GW182, gawky, LD47780P; 99.5 1.8E-14 6.1E-19 127.9 7.6 73 162-235 6-78 (89)
125 2ytc_A PRE-mRNA-splicing facto 99.5 3.4E-14 1.2E-18 123.7 9.3 78 158-236 7-85 (85)
126 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.2E-14 1.1E-18 128.2 9.5 81 246-326 10-95 (102)
127 2cpj_A Non-POU domain-containi 99.5 3.3E-14 1.1E-18 127.8 9.5 80 159-239 11-90 (99)
128 1b7f_A Protein (SXL-lethal pro 99.5 5.4E-14 1.8E-18 136.4 11.7 103 248-350 3-114 (168)
129 2dnm_A SRP46 splicing factor; 99.5 3.5E-14 1.2E-18 128.4 9.7 80 246-325 11-95 (103)
130 1oo0_B CG8781-PA, drosophila Y 99.5 4E-14 1.4E-18 129.5 10.2 81 246-326 24-109 (110)
131 4a8x_A RNA-binding protein wit 99.5 3.1E-14 1.1E-18 124.4 9.0 78 162-239 3-86 (88)
132 1p27_B RNA-binding protein 8A; 99.5 3.1E-14 1.1E-18 129.3 9.2 80 245-324 20-104 (106)
133 2cq3_A RNA-binding protein 9; 99.5 7.7E-14 2.6E-18 126.1 11.8 81 245-325 12-95 (103)
134 3ns6_A Eukaryotic translation 99.5 1.5E-14 5E-19 130.9 7.0 78 161-238 4-93 (100)
135 2a3j_A U1 small nuclear ribonu 99.5 4.1E-14 1.4E-18 134.3 10.4 81 159-239 25-111 (127)
136 2e5j_A Methenyltetrahydrofolat 99.5 3.3E-14 1.1E-18 127.5 9.1 81 159-239 15-95 (97)
137 2dgv_A HnRNP M, heterogeneous 99.5 4.3E-14 1.5E-18 124.9 9.6 79 247-325 7-88 (92)
138 1fjc_A Nucleolin RBD2, protein 99.5 2.9E-14 9.8E-19 127.2 8.4 82 245-326 13-94 (96)
139 2fy1_A RNA-binding motif prote 99.5 4.8E-14 1.7E-18 131.1 10.3 81 160-240 4-88 (116)
140 3ex7_B RNA-binding protein 8A; 99.5 4.8E-14 1.6E-18 132.1 10.2 83 159-241 18-105 (126)
141 1u6f_A Tcubp1, RNA-binding pro 99.5 7.7E-14 2.7E-18 132.9 11.8 83 244-326 38-125 (139)
142 1wex_A Hypothetical protein (r 99.5 5.2E-14 1.8E-18 129.0 10.1 79 247-326 14-94 (104)
143 2dh8_A DAZ-associated protein 99.5 4.9E-14 1.7E-18 127.9 9.9 82 159-241 12-98 (105)
144 2cqd_A RNA-binding region cont 99.5 5.7E-14 1.9E-18 129.9 10.5 83 158-241 12-99 (116)
145 1x5s_A Cold-inducible RNA-bind 99.5 3.1E-14 1E-18 128.4 8.5 81 246-326 10-95 (102)
146 1fjc_A Nucleolin RBD2, protein 99.5 1.8E-14 6.3E-19 128.4 6.9 81 159-239 12-92 (96)
147 2la6_A RNA-binding protein FUS 99.5 5.1E-14 1.8E-18 126.5 9.9 79 158-236 8-99 (99)
148 2cjk_A Nuclear polyadenylated 99.5 7.7E-15 2.6E-19 142.4 4.8 133 97-238 6-166 (167)
149 2kvi_A Nuclear polyadenylated 99.5 3.6E-14 1.2E-18 127.1 8.7 80 159-241 6-86 (96)
150 1x4e_A RNA binding motif, sing 99.5 3.5E-14 1.2E-18 123.8 8.4 76 161-236 3-83 (85)
151 2khc_A Testis-specific RNP-typ 99.5 4E-14 1.4E-18 131.2 9.3 79 158-236 35-118 (118)
152 2do0_A HnRNP M, heterogeneous 99.5 1.1E-13 3.6E-18 127.4 12.0 80 159-238 11-94 (114)
153 1nu4_A U1A RNA binding domain; 99.5 3E-14 1E-18 127.2 8.0 81 159-239 4-90 (97)
154 3p5t_L Cleavage and polyadenyl 99.5 1.2E-14 3.9E-19 128.8 5.2 76 249-324 2-84 (90)
155 2dnp_A RNA-binding protein 14; 99.5 7.3E-14 2.5E-18 123.3 10.4 78 245-325 6-83 (90)
156 2dgt_A RNA-binding protein 30; 99.5 7.5E-14 2.6E-18 123.7 10.5 78 245-325 7-84 (92)
157 2dng_A Eukaryotic translation 99.5 7.2E-14 2.5E-18 126.5 10.6 83 157-241 9-96 (103)
158 2fy1_A RNA-binding motif prote 99.5 8.6E-14 2.9E-18 129.4 11.3 79 247-325 6-88 (116)
159 1whx_A Hypothetical protein ri 99.5 2.5E-14 8.5E-19 132.1 7.6 77 160-237 7-83 (111)
160 2dgp_A Bruno-like 4, RNA bindi 99.5 5.8E-14 2E-18 127.4 9.9 82 245-326 10-99 (106)
161 1x4g_A Nucleolysin TIAR; struc 99.5 7.4E-14 2.5E-18 127.8 10.7 81 160-241 22-102 (109)
162 2dgu_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 126.7 10.4 80 159-241 7-86 (103)
163 2xnq_A Nuclear polyadenylated 99.5 7E-14 2.4E-18 125.9 10.3 78 158-238 17-95 (97)
164 2ywk_A Putative RNA-binding pr 99.5 5.7E-14 1.9E-18 124.8 9.6 77 246-322 14-94 (95)
165 1x5t_A Splicing factor 3B subu 99.5 3.4E-14 1.1E-18 126.6 8.1 80 247-326 4-89 (96)
166 2cpe_A RNA-binding protein EWS 99.5 5.5E-14 1.9E-18 129.2 9.7 82 159-240 11-105 (113)
167 2err_A Ataxin-2-binding protei 99.5 3.5E-14 1.2E-18 130.5 8.4 82 157-238 23-107 (109)
168 1u6f_A Tcubp1, RNA-binding pro 99.5 6.8E-14 2.3E-18 133.3 10.6 83 159-241 38-125 (139)
169 2dnp_A RNA-binding protein 14; 99.5 7.3E-14 2.5E-18 123.3 10.0 79 159-240 5-83 (90)
170 1x4c_A Splicing factor, argini 99.5 9.5E-14 3.2E-18 127.1 11.1 80 159-240 11-95 (108)
171 2fc9_A NCL protein; structure 99.5 3.7E-14 1.3E-18 127.8 8.3 83 159-241 11-94 (101)
172 1p1t_A Cleavage stimulation fa 99.5 1.7E-14 5.8E-19 130.4 6.0 80 160-239 5-89 (104)
173 3nmr_A Cugbp ELAV-like family 99.5 2.9E-14 1E-18 138.9 8.1 131 97-235 6-174 (175)
174 2jvo_A Nucleolar protein 3; nu 99.5 4.4E-14 1.5E-18 129.9 8.7 80 244-326 27-106 (108)
175 2ad9_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 133.0 8.5 80 247-327 30-111 (119)
176 1wi8_A EIF-4B, eukaryotic tran 99.5 8.4E-14 2.9E-18 126.2 10.5 79 246-326 13-97 (104)
177 2jrs_A RNA-binding protein 39; 99.5 7E-14 2.4E-18 128.4 10.0 80 245-324 23-107 (108)
178 1x4g_A Nucleolysin TIAR; struc 99.5 7.1E-14 2.4E-18 127.9 10.0 79 246-325 23-101 (109)
179 2dis_A Unnamed protein product 99.5 8E-14 2.7E-18 127.1 10.3 82 161-242 6-96 (109)
180 2dgx_A KIAA0430 protein; RRM d 99.5 7.9E-14 2.7E-18 124.9 10.0 80 161-240 7-92 (96)
181 2xnq_A Nuclear polyadenylated 99.5 9.8E-14 3.4E-18 124.9 10.6 76 246-324 20-96 (97)
182 1x4d_A Matrin 3; structural ge 99.5 4.2E-14 1.4E-18 129.3 8.3 77 247-324 14-93 (102)
183 2dgu_A Heterogeneous nuclear r 99.5 8.6E-14 2.9E-18 126.1 10.3 79 246-327 9-87 (103)
184 2kxn_B Transformer-2 protein h 99.5 8.8E-14 3E-18 132.0 10.8 79 246-324 44-127 (129)
185 3ulh_A THO complex subunit 4; 99.5 7.7E-14 2.6E-18 126.9 10.0 78 159-236 25-106 (107)
186 1x4f_A Matrin 3; structural ge 99.5 2.2E-14 7.6E-19 133.3 6.4 80 160-240 22-104 (112)
187 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.6E-18 123.7 11.4 79 159-240 11-91 (99)
188 2e5j_A Methenyltetrahydrofolat 99.5 4.8E-14 1.7E-18 126.3 8.5 79 246-324 17-95 (97)
189 2m2b_A RNA-binding protein 10; 99.5 4.5E-14 1.6E-18 133.8 8.7 82 158-240 18-110 (131)
190 2jvo_A Nucleolar protein 3; nu 99.5 4.9E-14 1.7E-18 129.6 8.5 80 157-239 25-104 (108)
191 2cpi_A CCR4-NOT transcription 99.5 9.1E-14 3.1E-18 128.0 10.2 80 245-324 12-102 (111)
192 2err_A Ataxin-2-binding protei 99.5 5.2E-14 1.8E-18 129.3 8.5 81 243-323 24-107 (109)
193 2cpd_A Apobec-1 stimulating pr 99.5 1.8E-13 6.2E-18 122.9 11.9 77 246-325 13-91 (99)
194 2ytc_A PRE-mRNA-splicing facto 99.5 9.5E-14 3.2E-18 120.9 9.7 76 245-321 9-85 (85)
195 2la6_A RNA-binding protein FUS 99.5 8.2E-14 2.8E-18 125.2 9.5 77 245-321 10-99 (99)
196 1x4c_A Splicing factor, argini 99.5 1.2E-13 4.1E-18 126.4 10.8 77 247-325 14-95 (108)
197 2nlw_A Eukaryotic translation 99.5 8.8E-14 3E-18 126.8 9.8 80 159-238 11-100 (105)
198 2la4_A Nuclear and cytoplasmic 99.5 4.2E-14 1.4E-18 127.4 7.6 76 247-323 26-101 (101)
199 3ucg_A Polyadenylate-binding p 99.5 8.1E-14 2.8E-18 122.2 9.1 76 162-238 5-85 (89)
200 2khc_A Testis-specific RNP-typ 99.5 8.2E-14 2.8E-18 129.0 9.6 77 245-321 37-118 (118)
201 2do0_A HnRNP M, heterogeneous 99.5 1.8E-13 6.2E-18 125.8 11.8 80 246-325 13-96 (114)
202 1x5o_A RNA binding motif, sing 99.5 2.4E-13 8.2E-18 125.1 12.6 80 159-238 21-112 (114)
203 2dhg_A TRNA selenocysteine ass 99.5 7.1E-14 2.4E-18 126.4 8.8 82 246-327 7-94 (104)
204 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.7E-14 1.6E-18 127.4 7.6 79 159-239 15-99 (100)
205 2cqh_A IGF-II mRNA-binding pro 99.5 4.2E-14 1.4E-18 125.5 7.1 80 160-241 5-86 (93)
206 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.3E-13 4.3E-18 134.3 11.2 81 159-239 35-120 (156)
207 2a3j_A U1 small nuclear ribonu 99.5 7.6E-14 2.6E-18 132.5 9.3 80 247-326 28-113 (127)
208 2i2y_A Fusion protein consists 99.5 1.1E-13 3.8E-18 133.8 10.7 80 159-238 69-148 (150)
209 2cpj_A Non-POU domain-containi 99.5 8.8E-14 3E-18 125.0 9.2 78 246-324 13-90 (99)
210 2krb_A Eukaryotic translation 99.5 8.3E-14 2.9E-18 120.6 8.7 71 163-233 1-81 (81)
211 2jvr_A Nucleolar protein 3; RN 99.5 4.2E-14 1.4E-18 131.2 7.2 77 161-237 26-104 (111)
212 2cqd_A RNA-binding region cont 99.5 1.5E-13 5.2E-18 127.0 10.9 81 244-325 13-98 (116)
213 1wf1_A RNA-binding protein RAL 99.5 9.7E-14 3.3E-18 127.2 9.5 78 159-239 23-101 (110)
214 3zzy_A Polypyrimidine tract-bi 99.5 8.3E-14 2.8E-18 132.7 9.3 77 249-325 29-108 (130)
215 3ucg_A Polyadenylate-binding p 99.5 1E-13 3.5E-18 121.5 9.2 76 247-323 5-85 (89)
216 3s7r_A Heterogeneous nuclear r 99.5 9.3E-14 3.2E-18 121.6 8.9 76 159-235 7-87 (87)
217 2cpe_A RNA-binding protein EWS 99.5 9.7E-14 3.3E-18 127.6 9.3 81 245-325 12-105 (113)
218 2fc8_A NCL protein; structure 99.5 8.2E-14 2.8E-18 125.6 8.6 83 159-241 11-95 (102)
219 3ex7_B RNA-binding protein 8A; 99.5 9.6E-14 3.3E-18 130.1 9.4 81 246-326 20-105 (126)
220 2dng_A Eukaryotic translation 99.5 1.9E-13 6.6E-18 123.6 11.0 79 246-326 13-96 (103)
221 2fc9_A NCL protein; structure 99.5 1.1E-13 3.8E-18 124.7 9.3 81 245-325 12-93 (101)
222 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.6E-13 5.4E-18 133.6 11.1 80 247-326 38-122 (156)
223 2qfj_A FBP-interacting repress 99.5 1.5E-13 5.2E-18 138.8 11.4 103 248-350 28-150 (216)
224 2cq4_A RNA binding motif prote 99.5 3.1E-14 1E-18 131.3 5.6 78 246-324 23-105 (114)
225 2cpi_A CCR4-NOT transcription 99.5 5.6E-14 1.9E-18 129.4 7.3 81 159-239 11-102 (111)
226 3ns6_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 128.4 5.8 77 247-323 5-93 (100)
227 2fc8_A NCL protein; structure 99.5 1.8E-13 6.1E-18 123.4 10.4 84 243-326 10-95 (102)
228 2nlw_A Eukaryotic translation 99.5 1.2E-13 4.2E-18 125.9 9.3 78 246-323 13-100 (105)
229 2lea_A Serine/arginine-rich sp 99.5 5.3E-14 1.8E-18 134.5 7.1 88 154-241 38-130 (135)
230 2hvz_A Splicing factor, argini 99.5 4.6E-14 1.6E-18 127.2 6.3 77 249-325 1-77 (101)
231 2cqp_A RNA-binding protein 12; 99.5 6.1E-14 2.1E-18 125.5 7.0 79 159-237 11-94 (98)
232 2cqp_A RNA-binding protein 12; 99.5 9.5E-14 3.3E-18 124.2 8.2 79 246-324 13-96 (98)
233 1x5p_A Negative elongation fac 99.5 2.6E-13 9E-18 121.5 11.1 79 159-240 11-89 (97)
234 2jwn_A Embryonic polyadenylate 99.5 2.5E-14 8.7E-19 133.6 4.6 77 247-324 35-116 (124)
235 2cqh_A IGF-II mRNA-binding pro 99.5 6.5E-14 2.2E-18 124.3 7.0 78 247-326 7-86 (93)
236 1whx_A Hypothetical protein ri 99.5 9.1E-14 3.1E-18 128.3 8.2 77 247-324 9-85 (111)
237 3sde_A Paraspeckle component 1 99.5 2.1E-13 7.3E-18 143.6 12.1 103 245-350 19-121 (261)
238 2div_A TRNA selenocysteine ass 99.5 9.7E-14 3.3E-18 124.4 8.1 78 247-324 8-95 (99)
239 3n9u_C Cleavage and polyadenyl 99.5 8.3E-14 2.9E-18 136.6 8.3 77 162-238 54-137 (156)
240 2kn4_A Immunoglobulin G-bindin 99.5 1.8E-13 6.2E-18 133.0 10.6 82 160-241 67-153 (158)
241 3ulh_A THO complex subunit 4; 99.5 1.9E-13 6.4E-18 124.3 10.0 76 246-321 27-106 (107)
242 2ek1_A RNA-binding protein 12; 99.5 4.3E-14 1.5E-18 125.6 5.7 78 159-236 11-93 (95)
243 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.2E-14 2.4E-18 126.2 7.2 77 246-324 17-99 (100)
244 1nu4_A U1A RNA binding domain; 99.5 9.6E-14 3.3E-18 123.8 7.9 79 247-325 7-91 (97)
245 2dh8_A DAZ-associated protein 99.5 1.5E-13 5.2E-18 124.6 9.3 80 245-325 13-97 (105)
246 1p1t_A Cleavage stimulation fa 99.5 6.7E-14 2.3E-18 126.4 6.9 80 247-326 7-91 (104)
247 2rs2_A Musashi-1, RNA-binding 99.5 1.8E-13 6.2E-18 125.8 9.9 81 245-326 22-107 (109)
248 2kvi_A Nuclear polyadenylated 99.5 8.6E-14 2.9E-18 124.6 7.5 77 246-325 8-85 (96)
249 1x5p_A Negative elongation fac 99.5 3.4E-13 1.1E-17 120.8 11.3 77 246-325 13-89 (97)
250 2cqg_A TDP-43, TAR DNA-binding 99.5 3.1E-13 1.1E-17 122.1 11.2 81 159-241 11-96 (103)
251 2kt5_A RNA and export factor-b 99.5 2.1E-13 7.3E-18 127.6 10.4 82 159-240 31-116 (124)
252 1s79_A Lupus LA protein; RRM, 99.4 1E-13 3.6E-18 126.6 8.1 77 160-237 8-88 (103)
253 2cpx_A Hypothetical protein FL 99.4 1.3E-13 4.6E-18 126.9 8.7 81 246-326 23-108 (115)
254 2adc_A Polypyrimidine tract-bi 99.4 2.3E-13 7.7E-18 140.6 11.2 105 246-350 32-176 (229)
255 2kt5_A RNA and export factor-b 99.4 4.1E-13 1.4E-17 125.6 11.8 79 246-324 33-115 (124)
256 3s7r_A Heterogeneous nuclear r 99.4 2.4E-13 8.1E-18 119.0 9.5 75 245-320 8-87 (87)
257 2dgw_A Probable RNA-binding pr 99.4 1.8E-13 6.3E-18 120.8 8.8 79 159-239 6-88 (91)
258 1x4f_A Matrin 3; structural ge 99.4 9.7E-14 3.3E-18 129.0 7.2 78 247-325 24-104 (112)
259 2ki2_A SS-DNA binding protein 99.4 5E-14 1.7E-18 124.1 4.9 76 164-240 2-82 (90)
260 1s79_A Lupus LA protein; RRM, 99.4 1.6E-13 5.5E-18 125.3 8.4 77 245-322 8-88 (103)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.2E-13 7.4E-18 129.4 9.5 77 159-235 59-140 (140)
262 1fje_B Nucleolin RBD12, protei 99.4 2E-14 6.9E-19 140.9 2.4 80 159-238 95-174 (175)
263 2ek1_A RNA-binding protein 12; 99.4 8.9E-14 3.1E-18 123.6 6.3 76 247-322 14-94 (95)
264 2dis_A Unnamed protein product 99.4 2.3E-13 7.9E-18 124.1 9.1 79 247-325 7-94 (109)
265 2cq4_A RNA binding motif prote 99.4 4.3E-14 1.5E-18 130.3 4.3 78 160-238 22-104 (114)
266 2mss_A Protein (musashi1); RNA 99.4 9.7E-14 3.3E-18 118.1 6.2 70 250-320 1-75 (75)
267 2mss_A Protein (musashi1); RNA 99.4 9.7E-14 3.3E-18 118.1 6.2 70 165-235 1-75 (75)
268 3n9u_C Cleavage and polyadenyl 99.4 1.5E-13 5E-18 134.9 8.3 78 247-324 54-138 (156)
269 1wg1_A KIAA1579 protein, homol 99.4 9.3E-14 3.2E-18 122.4 6.2 75 161-237 3-77 (88)
270 2rs2_A Musashi-1, RNA-binding 99.4 1.6E-13 5.6E-18 126.1 8.0 81 159-240 21-106 (109)
271 1wg5_A Heterogeneous nuclear r 99.4 2.9E-13 9.8E-18 123.2 9.6 80 159-239 11-95 (104)
272 1x4b_A Heterogeneous nuclear r 99.4 1.4E-13 4.8E-18 127.2 7.5 78 247-325 26-108 (116)
273 1x5o_A RNA binding motif, sing 99.4 4.1E-13 1.4E-17 123.6 10.6 79 246-324 23-113 (114)
274 1qm9_A Polypyrimidine tract-bi 99.4 1.9E-13 6.5E-18 137.0 9.0 103 248-350 3-145 (198)
275 2e44_A Insulin-like growth fac 99.4 4.4E-13 1.5E-17 119.4 10.4 79 161-239 13-93 (96)
276 1sjr_A Polypyrimidine tract-bi 99.4 2.3E-13 7.8E-18 134.5 9.3 78 248-325 46-126 (164)
277 2m2b_A RNA-binding protein 10; 99.4 9.5E-14 3.2E-18 131.6 6.3 79 245-324 20-109 (131)
278 3zzy_A Polypyrimidine tract-bi 99.4 2.2E-13 7.7E-18 129.7 8.8 77 164-240 29-108 (130)
279 2e44_A Insulin-like growth fac 99.4 5.5E-13 1.9E-17 118.8 10.7 78 247-324 14-93 (96)
280 1x4e_A RNA binding motif, sing 99.4 7.4E-14 2.5E-18 121.7 4.7 76 247-322 4-84 (85)
281 2krb_A Eukaryotic translation 99.4 1.1E-13 3.7E-18 119.9 5.6 69 249-317 2-80 (81)
282 1wg1_A KIAA1579 protein, homol 99.4 2.1E-13 7.3E-18 120.0 7.5 76 247-324 4-79 (88)
283 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 5.7E-13 1.9E-17 126.5 11.0 76 245-320 60-140 (140)
284 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.7E-13 1.3E-17 132.5 10.0 84 157-240 66-154 (165)
285 1fj7_A Nucleolin RBD1, protein 99.4 1.1E-13 3.7E-18 124.7 5.6 80 160-240 14-97 (101)
286 1uaw_A Mouse-musashi-1; RNP-ty 99.4 9.6E-14 3.3E-18 118.4 5.0 71 164-235 1-76 (77)
287 2jwn_A Embryonic polyadenylate 99.4 3.5E-13 1.2E-17 125.9 9.2 77 162-239 35-116 (124)
288 2cq2_A Hypothetical protein LO 99.4 3.1E-13 1.1E-17 126.0 8.7 78 159-237 21-105 (114)
289 2e5i_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 127.0 9.7 75 250-325 27-104 (124)
290 1sjr_A Polypyrimidine tract-bi 99.4 5E-13 1.7E-17 132.0 10.6 79 162-240 45-126 (164)
291 2ki2_A SS-DNA binding protein 99.4 7.6E-14 2.6E-18 122.9 4.3 75 249-324 2-81 (90)
292 2cqg_A TDP-43, TAR DNA-binding 99.4 8.9E-13 3.1E-17 119.1 11.4 79 245-325 12-95 (103)
293 2dgw_A Probable RNA-binding pr 99.4 4.9E-13 1.7E-17 118.1 9.2 77 246-324 8-88 (91)
294 2e5g_A U6 snRNA-specific termi 99.4 1.2E-12 4.2E-17 116.4 11.7 79 161-240 6-84 (94)
295 2g4b_A Splicing factor U2AF 65 99.4 5.8E-13 2E-17 129.7 10.4 102 247-350 3-119 (172)
296 2diu_A KIAA0430 protein; struc 99.4 8.1E-13 2.8E-17 118.5 10.2 75 162-241 7-87 (96)
297 3egn_A RNA-binding protein 40; 99.4 4.7E-13 1.6E-17 128.3 9.3 80 160-239 42-131 (143)
298 1x4b_A Heterogeneous nuclear r 99.4 3E-13 1E-17 125.0 7.6 81 160-241 24-109 (116)
299 3d2w_A TAR DNA-binding protein 99.4 4.8E-13 1.7E-17 118.6 8.5 77 159-239 7-85 (89)
300 1fj7_A Nucleolin RBD1, protein 99.4 1.5E-13 5.1E-18 123.8 5.3 79 247-326 16-98 (101)
301 1wg5_A Heterogeneous nuclear r 99.4 9E-13 3.1E-17 119.9 10.4 78 246-324 13-95 (104)
302 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.9E-13 6.7E-18 116.5 5.2 71 249-320 1-76 (77)
303 3beg_B Splicing factor, argini 99.4 6.9E-13 2.4E-17 123.0 8.8 75 247-323 15-94 (115)
304 1wez_A HnRNP H', FTP-3, hetero 99.4 5.2E-13 1.8E-17 121.5 7.9 79 159-239 11-93 (102)
305 3d2w_A TAR DNA-binding protein 99.4 1E-12 3.5E-17 116.5 9.3 76 246-325 9-86 (89)
306 2e5i_A Heterogeneous nuclear r 99.4 1.6E-12 5.6E-17 122.9 11.2 79 161-240 21-104 (124)
307 2xs2_A Deleted in azoospermia- 99.4 2.4E-13 8.3E-18 122.6 5.0 80 159-240 5-88 (102)
308 2diu_A KIAA0430 protein; struc 99.4 1E-12 3.5E-17 117.9 8.8 72 249-325 10-86 (96)
309 2cq2_A Hypothetical protein LO 99.4 8.2E-13 2.8E-17 123.1 8.5 76 247-323 24-106 (114)
310 2cpy_A RNA-binding protein 12; 99.4 2.4E-13 8.2E-18 125.7 4.8 79 159-238 11-94 (114)
311 2e5g_A U6 snRNA-specific termi 99.4 1.2E-12 4.2E-17 116.5 9.1 77 247-324 7-83 (94)
312 3egn_A RNA-binding protein 40; 99.4 1.1E-12 3.7E-17 125.8 9.4 80 247-326 44-133 (143)
313 2lcw_A RNA-binding protein FUS 99.1 5.4E-14 1.9E-18 130.1 0.0 82 160-241 4-98 (116)
314 1wel_A RNA-binding protein 12; 99.4 2.2E-13 7.6E-18 127.7 4.1 77 160-237 22-103 (124)
315 2yh0_A Splicing factor U2AF 65 99.4 1.3E-12 4.6E-17 130.1 10.0 101 248-350 4-139 (198)
316 3beg_B Splicing factor, argini 99.4 1.1E-12 3.9E-17 121.6 8.8 72 161-234 14-85 (115)
317 2cpy_A RNA-binding protein 12; 99.4 3.6E-13 1.2E-17 124.6 5.1 78 246-324 13-95 (114)
318 3q2s_C Cleavage and polyadenyl 99.4 6.9E-13 2.4E-17 137.9 7.8 76 162-237 67-149 (229)
319 1wf0_A TDP-43, TAR DNA-binding 99.4 4.1E-13 1.4E-17 118.0 5.1 78 161-240 3-80 (88)
320 2hgn_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 130.1 4.7 120 200-324 1-124 (139)
321 1iqt_A AUF1, heterogeneous nuc 99.4 3.8E-13 1.3E-17 114.3 4.5 70 165-235 1-75 (75)
322 2hzc_A Splicing factor U2AF 65 99.3 1.1E-12 3.9E-17 114.3 7.6 72 161-234 4-86 (87)
323 2hgl_A HNRPF protein, heteroge 99.3 6.4E-13 2.2E-17 127.6 6.5 76 247-323 43-125 (136)
324 2db1_A Heterogeneous nuclear r 99.3 4.2E-13 1.4E-17 125.2 4.7 76 161-237 15-97 (118)
325 2lmi_A GRSF-1, G-rich sequence 99.3 6E-13 2E-17 121.7 5.5 77 160-237 8-91 (107)
326 1wez_A HnRNP H', FTP-3, hetero 99.3 1E-12 3.4E-17 119.6 6.9 77 246-324 13-93 (102)
327 1iqt_A AUF1, heterogeneous nuc 99.3 4.4E-13 1.5E-17 113.8 4.2 70 250-320 1-75 (75)
328 2f3j_A RNA and export factor b 99.3 1.6E-12 5.4E-17 130.1 8.9 80 159-238 84-167 (177)
329 2db1_A Heterogeneous nuclear r 99.3 1.1E-12 3.8E-17 122.3 7.1 77 246-323 15-98 (118)
330 2bz2_A Negative elongation fac 99.3 1.8E-12 6E-17 121.8 8.4 78 159-239 35-112 (121)
331 3q2s_C Cleavage and polyadenyl 99.3 8.2E-13 2.8E-17 137.4 6.7 78 247-324 67-151 (229)
332 2hgl_A HNRPF protein, heteroge 99.3 5.6E-13 1.9E-17 128.0 5.0 77 160-237 41-124 (136)
333 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.7E-18 128.1 0.0 80 246-325 5-97 (116)
334 1wel_A RNA-binding protein 12; 99.3 4.1E-13 1.4E-17 125.9 3.7 77 247-324 24-105 (124)
335 1wf0_A TDP-43, TAR DNA-binding 99.3 9.7E-13 3.3E-17 115.6 5.4 77 247-325 4-80 (88)
336 2dnn_A RNA-binding protein 12; 99.3 2.8E-12 9.6E-17 118.5 8.7 74 247-322 15-92 (109)
337 2hzc_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 111.2 8.6 71 247-319 5-86 (87)
338 2bz2_A Negative elongation fac 99.3 2.8E-12 9.5E-17 120.4 8.0 77 246-325 37-113 (121)
339 2voo_A Lupus LA protein; RNA-b 99.3 4.5E-12 1.6E-16 128.4 10.1 114 209-323 63-187 (193)
340 2lmi_A GRSF-1, G-rich sequence 99.3 1.1E-12 3.8E-17 119.9 5.0 77 246-323 9-92 (107)
341 2xs2_A Deleted in azoospermia- 99.3 1.5E-12 5.2E-17 117.4 5.3 77 246-324 7-87 (102)
342 2hgm_A HNRPF protein, heteroge 99.3 3.9E-12 1.3E-16 120.6 8.3 77 159-237 38-120 (126)
343 3u1l_A PRE-mRNA-splicing facto 99.3 3.9E-12 1.3E-16 133.1 9.0 82 160-242 131-233 (240)
344 2hgn_A Heterogeneous nuclear r 99.3 1.3E-12 4.3E-17 126.0 4.8 79 159-239 42-124 (139)
345 3u1l_A PRE-mRNA-splicing facto 99.3 5E-12 1.7E-16 132.3 9.5 103 222-325 108-231 (240)
346 2f3j_A RNA and export factor b 99.3 4.6E-12 1.6E-16 126.7 8.8 78 247-324 87-168 (177)
347 2dnn_A RNA-binding protein 12; 99.3 2E-12 7E-17 119.4 5.7 74 162-237 15-92 (109)
348 2dha_A FLJ20171 protein; RRM d 99.3 2E-12 6.7E-17 122.1 4.5 75 161-236 21-103 (123)
349 2dit_A HIV TAT specific factor 99.3 1.5E-11 5.2E-16 113.3 10.4 83 158-240 10-104 (112)
350 2dnl_A Cytoplasmic polyadenyla 99.2 8.2E-12 2.8E-16 115.4 7.8 73 160-235 5-85 (114)
351 3pgw_S U1-70K; protein-RNA com 99.2 9.5E-12 3.3E-16 141.1 9.6 80 160-239 99-183 (437)
352 2pe8_A Splicing factor 45; RRM 99.2 1.5E-11 5.3E-16 112.7 9.1 78 160-237 5-93 (105)
353 2dnl_A Cytoplasmic polyadenyla 99.2 1.7E-11 5.7E-16 113.3 8.5 78 247-327 7-92 (114)
354 2dha_A FLJ20171 protein; RRM d 99.2 4.5E-12 1.5E-16 119.6 4.2 76 247-323 22-105 (123)
355 2pe8_A Splicing factor 45; RRM 99.2 3.2E-11 1.1E-15 110.6 9.8 76 247-322 7-93 (105)
356 2hgm_A HNRPF protein, heteroge 99.2 7.6E-12 2.6E-16 118.6 5.6 75 247-323 41-121 (126)
357 2dit_A HIV TAT specific factor 99.2 4.3E-11 1.5E-15 110.3 10.1 80 245-324 12-103 (112)
358 2j8a_A Histone-lysine N-methyl 99.2 1.5E-11 5.1E-16 116.4 5.1 77 249-325 3-98 (136)
359 2j8a_A Histone-lysine N-methyl 99.1 1.7E-11 6E-16 115.9 4.2 73 164-236 3-94 (136)
360 2voo_A Lupus LA protein; RNA-b 99.1 6.1E-11 2.1E-15 120.1 8.4 75 162-237 108-186 (193)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.3E-10 1.1E-14 103.1 11.5 75 163-239 10-91 (100)
362 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 3.9E-15 106.8 8.2 78 160-237 2-96 (105)
363 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.6E-10 5.3E-15 105.2 8.4 67 257-325 26-92 (100)
364 3v4m_A Splicing factor U2AF 65 99.1 2.8E-10 9.5E-15 104.3 8.7 77 247-323 4-97 (105)
365 3tht_A Alkylated DNA repair pr 99.0 3.1E-10 1.1E-14 124.6 9.4 76 159-235 14-96 (345)
366 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4.2E-15 106.4 4.2 68 253-320 20-103 (104)
367 1jmt_A Splicing factor U2AF 35 99.0 1.4E-10 4.7E-15 106.1 4.4 68 168-235 20-103 (104)
368 3tht_A Alkylated DNA repair pr 99.0 5.4E-10 1.8E-14 122.8 9.1 75 246-321 16-97 (345)
369 3ue2_A Poly(U)-binding-splicin 99.0 1.2E-09 4.1E-14 102.3 8.2 76 161-236 18-107 (118)
370 3ue2_A Poly(U)-binding-splicin 98.9 1.3E-09 4.4E-14 102.1 7.7 76 247-322 19-108 (118)
371 3s6e_A RNA-binding protein 39; 98.9 2E-09 7E-14 100.1 8.4 76 247-322 6-92 (114)
372 3s6e_A RNA-binding protein 39; 98.9 2.4E-09 8.4E-14 99.6 8.1 77 160-236 4-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 2.3E-08 7.9E-13 88.9 8.6 74 246-323 5-86 (91)
374 1uw4_A UPF3X; nonsense mediate 98.7 5.4E-08 1.9E-12 86.9 8.3 84 666-751 2-88 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.3E-07 4.3E-12 88.9 9.6 77 246-323 16-96 (121)
376 1owx_A Lupus LA protein, SS-B, 98.5 3.9E-07 1.3E-11 85.6 9.2 74 160-234 15-92 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.5 1.7E-07 5.8E-12 83.8 6.1 73 246-322 13-94 (95)
378 2l08_A Regulator of nonsense t 98.5 6.6E-08 2.3E-12 86.9 3.2 84 666-751 10-96 (97)
379 2dnr_A Synaptojanin-1; RRM dom 98.4 3.1E-07 1.1E-11 81.7 6.9 74 161-238 5-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 7.6E-07 2.6E-11 91.1 8.2 64 259-322 140-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.2 2E-06 6.8E-11 88.0 7.5 75 162-236 123-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.1 2E-06 7E-11 76.9 5.3 73 160-236 12-93 (95)
383 2l9w_A U4/U6 snRNA-associated- 98.1 4.5E-06 1.5E-10 76.3 7.2 72 247-319 20-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.6 0.00037 1.3E-08 63.2 11.2 89 161-261 6-99 (104)
385 2l9w_A U4/U6 snRNA-associated- 97.6 8.9E-05 3.1E-09 67.8 7.2 71 162-233 20-95 (117)
386 2dhx_A Poly (ADP-ribose) polym 97.6 0.00038 1.3E-08 63.1 10.5 84 247-334 7-95 (104)
387 1wey_A Calcipressin 1; structu 96.8 0.0013 4.6E-08 59.7 5.2 75 163-238 5-84 (104)
388 1wey_A Calcipressin 1; structu 96.7 0.0018 6.2E-08 58.8 5.4 75 249-324 6-85 (104)
389 1uw4_A UPF3X; nonsense mediate 96.2 0.013 4.5E-07 52.1 7.7 65 164-228 2-73 (91)
390 1wwh_A Nucleoporin 35, nucleop 96.0 0.015 5.3E-07 54.0 7.6 75 245-322 21-96 (119)
391 1wwh_A Nucleoporin 35, nucleop 94.6 0.093 3.2E-06 48.8 8.0 71 162-235 23-94 (119)
392 1whv_A Poly(A)-specific ribonu 94.2 0.065 2.2E-06 48.1 5.8 55 163-221 16-70 (100)
393 3ctr_A Poly(A)-specific ribonu 93.7 0.068 2.3E-06 48.1 4.9 54 164-221 7-60 (101)
394 1whv_A Poly(A)-specific ribonu 93.2 0.081 2.8E-06 47.5 4.6 54 249-306 17-70 (100)
395 2l08_A Regulator of nonsense t 93.0 0.088 3E-06 47.2 4.5 68 161-228 7-81 (97)
396 3ctr_A Poly(A)-specific ribonu 92.8 0.063 2.1E-06 48.3 3.2 53 250-306 8-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 92.7 0.048 1.6E-06 61.9 3.0 56 162-218 52-107 (464)
398 3p3d_A Nucleoporin 53; structu 92.0 0.1 3.5E-06 49.3 3.7 72 249-322 8-98 (132)
399 3pq1_A Poly(A) RNA polymerase; 91.5 0.07 2.4E-06 60.6 2.5 56 248-304 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 88.4 0.34 1.2E-05 45.7 4.0 72 163-236 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 70.4 10 0.00034 43.5 8.7 55 163-221 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 54.0 24 0.00082 40.4 7.9 54 249-306 441-494 (507)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.2e-30 Score=263.50 Aligned_cols=165 Identities=19% Similarity=0.350 Sum_probs=146.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 457899999999999999999999999999999984 577999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 235 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 235 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri---t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
+...... ......+|||+|||.++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|++||+.|||..|.
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8654321 2224568999999999999999999999999999976 3446899999999999999999999999999
Q ss_pred CcEEEEEecCCCccc
Q 003329 312 GKRIKLEPSRPGGAR 326 (829)
Q Consensus 312 Gr~I~V~~a~~~~~r 326 (829)
|++|+|++++++..+
T Consensus 170 g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 170 DRKVFVGRFKSRKER 184 (213)
T ss_dssp TEECEEEECCCHHHH
T ss_pred CEEEEEEEcCCCccc
Confidence 999999999876543
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-29 Score=241.12 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=143.2
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
|+|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999985 35689999999999999999999999999999999999997655
Q ss_pred CCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE
Q 003329 240 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 314 (829)
Q Consensus 240 ~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~ 314 (829)
.. ......+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3345679999999999999999999999999999976 3567899999999999999999999999999999
Q ss_pred EEEEecCC
Q 003329 315 IKLEPSRP 322 (829)
Q Consensus 315 I~V~~a~~ 322 (829)
|+|+||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.7e-28 Score=238.04 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=141.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
++++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999984 56788999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
+.. ......+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 653 2345678999999999999999999999999999976 3456899999999999999999999999999
Q ss_pred CcE--EEEEec
Q 003329 312 GKR--IKLEPS 320 (829)
Q Consensus 312 Gr~--I~V~~a 320 (829)
|+. |+|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888875
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.6e-28 Score=239.33 Aligned_cols=155 Identities=23% Similarity=0.429 Sum_probs=142.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
++++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999984 45688999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
++.. .....+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 345689999999999999999999999999999976 4556899999999999999999999999998
Q ss_pred C--cEEEEEec
Q 003329 312 G--KRIKLEPS 320 (829)
Q Consensus 312 G--r~I~V~~a 320 (829)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.7e-28 Score=246.56 Aligned_cols=163 Identities=20% Similarity=0.387 Sum_probs=143.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999985 56789999999999999999999999999999999999876
Q ss_pred CCCCCC-------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003329 237 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 304 (829)
Q Consensus 237 pk~~~~-------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~ 304 (829)
...... .......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 01234579999999999999999999999999999976 345689999999999999999999
Q ss_pred hCCCeeCCcEEEEEecCCCc
Q 003329 305 LNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 305 LnG~~i~Gr~I~V~~a~~~~ 324 (829)
|||..|.|++|+|.++.++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=7.7e-28 Score=249.34 Aligned_cols=165 Identities=25% Similarity=0.354 Sum_probs=147.9
Q ss_pred CCCCCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 159 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 159 ~e~~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...++++|||+|||+ ++++++|+++|++||+|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.|+.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345789999999999 9999999999999999999997666689999999999999999999999999999999999875
Q ss_pred CCCCCCC-------------------------------CCCcccceecccCCCCCHHHHHHHhcccC-CeEEEEeCCCcc
Q 003329 238 KDNPSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKR 285 (829)
Q Consensus 238 k~~~~~~-------------------------------~~~~~tLfV~NLp~~vTeedL~~iFs~fG-~I~~vrit~~sr 285 (829)
+.....+ .....+|||+|||.++|+++|+++|++|| .|.+|++....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 4211100 11247899999999999999999999999 999999977789
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCeeC-CcEEEEEecCCC
Q 003329 286 HHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 323 (829)
Q Consensus 286 G~aFVeF~~~e~A~kAl~~LnG~~i~-Gr~I~V~~a~~~ 323 (829)
|||||+|.+.++|.+|++.|+|..+. |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999864
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=6.4e-28 Score=241.14 Aligned_cols=167 Identities=19% Similarity=0.367 Sum_probs=140.9
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34567899999999999999999999999999999984 466899999999999999999984 899999999999
Q ss_pred cccCCCCCCCC--CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003329 233 HFSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 233 ~~a~pk~~~~~--~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
.++.+...... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 99876543221 2234579999999999999999999999999999976 456799999999999999999986
Q ss_pred CCCeeCCcEEEEEecCCCccc
Q 003329 306 NRSDIAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 306 nG~~i~Gr~I~V~~a~~~~~r 326 (829)
+|..+.|+.|.|.++.++...
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp SCCEETTEECEEEECC-----
T ss_pred CCcEECCEEEEEEecCChhHh
Confidence 799999999999999887643
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1e-27 Score=254.55 Aligned_cols=164 Identities=23% Similarity=0.445 Sum_probs=146.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHH----HHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr----~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
+..++++|||+|||.++|+++|+ ++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 89999999999985 6789999999999999999999999999999999999
Q ss_pred cccCCCCCCC----------------------------------------------------------------------
Q 003329 233 HFSIPKDNPS---------------------------------------------------------------------- 242 (829)
Q Consensus 233 ~~a~pk~~~~---------------------------------------------------------------------- 242 (829)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9986644200
Q ss_pred -------------------------------------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcc
Q 003329 243 -------------------------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 285 (829)
Q Consensus 243 -------------------------------------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~sr 285 (829)
.......+|||+|||.++|+++|+++|++||.|.+|++...++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0111346799999999999999999999999999999877678
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCeeC-CcEEEEEecCC
Q 003329 286 HHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRP 322 (829)
Q Consensus 286 G~aFVeF~~~e~A~kAl~~LnG~~i~-Gr~I~V~~a~~ 322 (829)
|||||+|.+.++|.+|++.|||..|. |++|+|+|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3e-28 Score=258.96 Aligned_cols=225 Identities=18% Similarity=0.264 Sum_probs=181.4
Q ss_pred cccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCccc-cCCcc----------cccccCCCC---CCC
Q 003329 95 NPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMEL-EGEPQ----------ESLSMREHP---YGE 160 (829)
Q Consensus 95 ~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l-~~~~~----------~~~~~ge~~---~~e 160 (829)
...++..||.+ +++.+|..+|..+| +.++.+-... |... ..... .+..+.... .-.
T Consensus 23 ~~l~V~nLp~~--------~te~~l~~~F~~~G-i~~~~~~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 23 RKILIRGLPGD--------VTNQEVHDLLSDYE-LKYCFVDKYK-GTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp CEEEEECCCTT--------CCHHHHHHHTTTSC-EEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHcC-CEEEEEecCC-CEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 34566677877 79999999999999 8888874433 2221 11100 000000000 012
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
.+.++|||+|||.++|+++|+++|++||.|..+++ +++++|||||+|.+.++|.+|++.|++..+.|++|.|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999873 5678999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccceecccCCCC-CHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 003329 236 IPKDNPSDKDLNQGTLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 310 (829)
Q Consensus 236 ~pk~~~~~~~~~~~tLfV~NLp~~v-TeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i 310 (829)
.++.... ......+|||+|||.++ |+++|+++|+.||.|.++++ ++.++|+|||+|.+.++|.+|++.|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 33456899999999995 99999999999999999875 355789999999999999999999999999
Q ss_pred CCcEEEEEecCCCcccchhc
Q 003329 311 AGKRIKLEPSRPGGARRNLM 330 (829)
Q Consensus 311 ~Gr~I~V~~a~~~~~rr~~~ 330 (829)
.|++|+|.++.++..++..+
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~ 271 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSML 271 (284)
T ss_dssp TTEECEEEECCSSSCHHHHH
T ss_pred CCeEEEEEEecCCCcccchh
Confidence 99999999999988765443
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.4e-28 Score=242.13 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=144.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||.++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456789999999999999999999999998644311 367899999999999999999995 999999999999999
Q ss_pred cCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE
Q 003329 235 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 314 (829)
Q Consensus 235 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~ 314 (829)
+.++... ......+|||+|||.++|+++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..+.|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9875432 33456899999999999999999999999999999667788999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 003329 315 IKLEPSRPG 323 (829)
Q Consensus 315 I~V~~a~~~ 323 (829)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999875
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=9.1e-28 Score=235.13 Aligned_cols=154 Identities=16% Similarity=0.342 Sum_probs=140.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcc----C-------CEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 230 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~f----G-------~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L 230 (829)
+.++|||+|||+++|+++|+++|++| | .|..+++ .+++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 57999999999999999999999999 7 7888864 678999999999999999999 799999999999
Q ss_pred cccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003329 231 DIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 231 ~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
.|.++.+.... ....+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998654322 34689999999999999999999999999999976 4556899999999999999999999
Q ss_pred CCCeeCCcEEEEEecC
Q 003329 306 NRSDIAGKRIKLEPSR 321 (829)
Q Consensus 306 nG~~i~Gr~I~V~~a~ 321 (829)
||..+.|++|+|++|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999873
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3.1e-28 Score=259.89 Aligned_cols=221 Identities=17% Similarity=0.218 Sum_probs=175.0
Q ss_pred ccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCc---cc-cCCc---------ccccccC--CCCC
Q 003329 94 MNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---EL-EGEP---------QESLSMR--EHPY 158 (829)
Q Consensus 94 e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~---~l-~~~~---------~~~~~~g--e~~~ 158 (829)
....++..||.+ +++.+|..+|..+|.+.+++++.+..+- .+ .... .....+. ....
T Consensus 41 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 41 LTTVLVKNLPKS--------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -CEEEEEEECTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 344556667777 7999999999999999999998864431 11 0000 0000011 1111
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccC-CEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG-~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....++|||+|||.++++++|+++|++|| +|..|++ .++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 113 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 113 SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 224578999999999999999999999999 9999984 24689999999999999999999999999999999999
Q ss_pred ccCCCCCCCC---CCCCcccceecccCCC-CCHHHHHHHhcccCCeEEEEeC------CCcccEEEEEEcCHHHHHHHHH
Q 003329 234 FSIPKDNPSD---KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALK 303 (829)
Q Consensus 234 ~a~pk~~~~~---~~~~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vrit------~~srG~aFVeF~~~e~A~kAl~ 303 (829)
|+.+...... ......+|||+|||.+ +|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 9987654322 2334579999999999 9999999999999999999873 667899999999999999999
Q ss_pred HhCCCeeCCcEEEEEecCCC
Q 003329 304 SLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 304 ~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.|||..|.|++|+|.|++++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.3e-27 Score=244.78 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=137.9
Q ss_pred CCcEEEEeCCC-CCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 162 PSRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 162 ~srtLfV~NLP-~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
++++|||+||| .++|+++|+++|++||+|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.|+..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777799999999999999999999999999999999999864321
Q ss_pred -CCC-----------C---------------------CCCcccceecccCCCCCHHHHHHHhcccCCe--EEEEeCC---
Q 003329 241 -PSD-----------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV--KEIRETP--- 282 (829)
Q Consensus 241 -~~~-----------~---------------------~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I--~~vrit~--- 282 (829)
+.. + .....+|||+|||+++|+++|+++|++||.| .++++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999999 8888643
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCeeCCc----EEEEEec
Q 003329 283 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK----RIKLEPS 320 (829)
Q Consensus 283 ~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr----~I~V~~a 320 (829)
.++|+|||+|.+.++|.+||..|||.+|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999886 5666664
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.4e-27 Score=251.93 Aligned_cols=178 Identities=19% Similarity=0.317 Sum_probs=162.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
.++++|||+|||.++|+++|+++|++|| |..|++ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 4679999999999999999999999999 999987 7899999999999999999999999999999999999864
Q ss_pred CCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 241 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 241 ~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
...+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999875 45678999999999999999999999999999999
Q ss_pred EEEecCCCcc-------cchhccccchhh-cHHHHHHHHhhcC
Q 003329 316 KLEPSRPGGA-------RRNLMLQLNQEL-EQDESRILQHQVG 350 (829)
Q Consensus 316 ~V~~a~~~~~-------rr~~~~ql~~~~-~~~~l~~~f~~~G 350 (829)
.|.++.++.. +..++.+++..+ +.++++.+|..||
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 9999987652 345788999995 8999999998886
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=2e-27 Score=232.62 Aligned_cols=157 Identities=20% Similarity=0.405 Sum_probs=137.6
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cC--CcceEEEEEEcCHHHHHHHHHHhcCCccc---ccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 231 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~--kskG~AFV~F~d~e~A~~Ai~~Lng~~l~---gr~L~ 231 (829)
.+++|||+|||+++|+++|+++|++||+|.+|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999984 22 78999999999999999999999998876 56777
Q ss_pred ccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003329 232 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 307 (829)
Q Consensus 232 V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG 307 (829)
+.++.+... ......+|||+|||.++|+++|+++|++||.|.++++ .+.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655432 2345689999999999999999999999999999976 345689999999999999999999999
Q ss_pred CeeC---CcEEEEEecC
Q 003329 308 SDIA---GKRIKLEPSR 321 (829)
Q Consensus 308 ~~i~---Gr~I~V~~a~ 321 (829)
..+. |++|+|+||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=8.9e-28 Score=241.75 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=145.6
Q ss_pred CCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 162 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 162 ~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
.+++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.|+.+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999997666689999999999999999999999999999999999875421
Q ss_pred CCCC-------------------------------CCCcccceecccCCCCCHHHHHHHhcccC-CeEEEEeCCCcccEE
Q 003329 241 PSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHHK 288 (829)
Q Consensus 241 ~~~~-------------------------------~~~~~tLfV~NLp~~vTeedL~~iFs~fG-~I~~vrit~~srG~a 288 (829)
...+ .....+|||+|||..+|+++|+++|++|| .|.+|++....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 11257899999999999999999999999 999999977779999
Q ss_pred EEEEcCHHHHHHHHHHhCCCeeC-CcEEEEEecCCC
Q 003329 289 FIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 323 (829)
Q Consensus 289 FVeF~~~e~A~kAl~~LnG~~i~-Gr~I~V~~a~~~ 323 (829)
||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999864
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=5.2e-28 Score=235.73 Aligned_cols=155 Identities=20% Similarity=0.432 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
++++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999984 567899999999999999999994 578899999999986
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
++. ......+|||+|||.++|+++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 2234578999999999999999999999999999976 35678999999999999999998 8999999
Q ss_pred CcEEEEEecCCC
Q 003329 312 GKRIKLEPSRPG 323 (829)
Q Consensus 312 Gr~I~V~~a~~~ 323 (829)
|++|+|+++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.3e-27 Score=237.48 Aligned_cols=162 Identities=16% Similarity=0.324 Sum_probs=143.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcc----C-------CEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 230 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~f----G-------~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L 230 (829)
.+++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 47999999999999999999999999 6 7777764 678999999999999999999 799999999999
Q ss_pred cccccCCCCCCCC----------------CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEE
Q 003329 231 DIHFSIPKDNPSD----------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKF 289 (829)
Q Consensus 231 ~V~~a~pk~~~~~----------------~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aF 289 (829)
.|.++.+...... ......+|||+|||.++++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532111 1134579999999999999999999999999999976 445689999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 290 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 290 VeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
|+|.+.++|.+|++.|||..+.|++|+|++++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999988764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.3e-26 Score=247.23 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=157.1
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec---CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t---~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.+.++|||+|||+++|+++|+++|++||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456678999999999999999999999999999999852 2358999999999999999996 99999999999999
Q ss_pred ccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccC-CeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003329 234 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRS 308 (829)
Q Consensus 234 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG-~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~ 308 (829)
++ ...+|||+|||.++|+++|+++|+.|| .|..|++. +.++|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 357899999999999999999999999 99999863 356899999999999999999999999
Q ss_pred eeCCcEEEEEecCCCcc-----------cchhccccchh-hcHHHHHHHHhhcC
Q 003329 309 DIAGKRIKLEPSRPGGA-----------RRNLMLQLNQE-LEQDESRILQHQVG 350 (829)
Q Consensus 309 ~i~Gr~I~V~~a~~~~~-----------rr~~~~ql~~~-~~~~~l~~~f~~~G 350 (829)
.+.|++|.|.++.+... +..++.+++.. ++.++++.+|.+||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 99999999999876543 23468889999 99999999999987
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2.1e-25 Score=235.58 Aligned_cols=156 Identities=28% Similarity=0.413 Sum_probs=141.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
..+.++|||+|||+++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|+..|+|..+.|+.|.|.|+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 355789999999999999999999999999999986 56799999999999999999999999999999999999863
Q ss_pred CCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhC-CCeeC---
Q 003329 240 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIA--- 311 (829)
Q Consensus 240 ~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~Ln-G~~i~--- 311 (829)
..+|||+|||..+|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|+..|+ +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 468999999999999999999999999999976 45679999999999999999999995 44554
Q ss_pred CcEEEEEecCCCccc
Q 003329 312 GKRIKLEPSRPGGAR 326 (829)
Q Consensus 312 Gr~I~V~~a~~~~~r 326 (829)
|++|.|+++.+...+
T Consensus 168 ~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 168 PRPVIVEPMEQFDDE 182 (261)
T ss_dssp CCBCEEEECCCEESS
T ss_pred CceEEEeeccccCcc
Confidence 899999999876543
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.6e-19 Score=173.48 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=113.1
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHh-cCCccccccccccccCCCC------------CCCCCCCCcccceecccCCCCCHH
Q 003329 197 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSDKDLNQGTLVVFNLDPSVSNE 263 (829)
Q Consensus 197 ~kskG~AFV~F~d~e~A~~Ai~~L-ng~~l~gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~~vTee 263 (829)
.+.+|+++|+|.+.++|++|++++ ++..+.| .+.+.++..+. .........++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 99999876521 112223456899999999999999
Q ss_pred HHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 264 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 264 dL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998764
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.5e-18 Score=169.08 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=103.3
Q ss_pred cCCcceEEEEEEcCHHHHHHHHHHhcCCccc-------cccccccccCCCC--CCCCCCCCcccceecccCCCCCHHHHH
Q 003329 196 ACKHRGFVMISYYDIRAARTAMRALQNKPLR-------RRKLDIHFSIPKD--NPSDKDLNQGTLVVFNLDPSVSNEDLR 266 (829)
Q Consensus 196 t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~-------gr~L~V~~a~pk~--~~~~~~~~~~tLfV~NLp~~vTeedL~ 266 (829)
..+++|||||+|.+.++|++|++.+++.... +............ ..........+|||+|||.++|+++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4578999999999999999999988754322 2222222111111 111223446899999999999999999
Q ss_pred HHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 267 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 267 ~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
++|++||.|.+|++ ++.++|||||+|.+.++|++||+.|||..|.|++|+|++++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999986 456799999999999999999999999999999999999988754
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.1e-18 Score=162.23 Aligned_cols=103 Identities=16% Similarity=0.317 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.+++|||+|||+++|+++|+++|++||+|.+|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4679999999999999999999999999999984 4557899999999999999999999999999999999999876
Q ss_pred CCCCC----CCCCcccceecccCCCCCHHH
Q 003329 239 DNPSD----KDLNQGTLVVFNLDPSVSNED 264 (829)
Q Consensus 239 ~~~~~----~~~~~~tLfV~NLp~~vTeed 264 (829)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 122345899999999999864
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=142.30 Aligned_cols=76 Identities=22% Similarity=0.472 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3589999999999999999999999999999984 57899999999999999999999999999999999999997
Q ss_pred C
Q 003329 237 P 237 (829)
Q Consensus 237 p 237 (829)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=4.2e-14 Score=149.73 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCcccceecccCCCCCHHHHH----HHhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 246 LNQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~----~iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...++|||+|||.++|+++|+ ++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 356899999999999999977 89999999999987 567889999999999999999999999999999999999
Q ss_pred cCCCcc
Q 003329 320 SRPGGA 325 (829)
Q Consensus 320 a~~~~~ 325 (829)
++....
T Consensus 87 a~~~~~ 92 (282)
T 3pgw_A 87 AKTDSD 92 (282)
T ss_pred eccCcc
Confidence 977553
No 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=1.8e-16 Score=146.30 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=92.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
..++++|||+|||.++++++|+++|++||.|..|++ .+.++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456899999999999999999999999999999985 566799999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCC
Q 003329 238 KDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 274 (829)
Q Consensus 238 k~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~ 274 (829)
+... .+++...++++|+++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 567788899999999999984
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=140.63 Aligned_cols=76 Identities=28% Similarity=0.485 Sum_probs=71.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3568999999999999999999999999999976 46779999999999999999999999999999999999998
Q ss_pred C
Q 003329 322 P 322 (829)
Q Consensus 322 ~ 322 (829)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 28
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=3.9e-16 Score=149.36 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=77.9
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-
Q 003329 202 FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 280 (829)
Q Consensus 202 ~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri- 280 (829)
++|++|.|...|..||..+++....++. .+.+..+ ..+.....+|||+|||.++|+++|+++|++||.|..|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp ------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 5788899999999999999887766654 2334333 233445689999999999999999999999999999986
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCccc
Q 003329 281 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 281 ----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~r 326 (829)
++.++|||||+|.+.++|++|++.|+|..|.|++|+|++++++..+
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999886543
No 29
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=137.62 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=81.7
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 243 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 243 (829)
++|||+|||.++|+++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986544899999999999999999999999999999999999987653322
Q ss_pred C------CCCcccceecccC
Q 003329 244 K------DLNQGTLVVFNLD 257 (829)
Q Consensus 244 ~------~~~~~tLfV~NLp 257 (829)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1225689999996
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=139.59 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=75.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+||++++|+++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4578999999999999999999999999999976 46789999999999999999999999999999999999998
Q ss_pred CCcccch
Q 003329 322 PGGARRN 328 (829)
Q Consensus 322 ~~~~rr~ 328 (829)
.+..++.
T Consensus 85 ~~~~~~~ 91 (110)
T 3s8s_A 85 KGQQRMK 91 (110)
T ss_dssp TTHHHHH
T ss_pred CCcHHHH
Confidence 7765443
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=138.09 Aligned_cols=78 Identities=18% Similarity=0.395 Sum_probs=73.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
+.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999999999999984 578999999999999999999999999999999999999
Q ss_pred cCC
Q 003329 235 SIP 237 (829)
Q Consensus 235 a~p 237 (829)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=136.09 Aligned_cols=80 Identities=13% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCc--cccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~--l~gr~L~V~~a~ 236 (829)
...|+++|||+|||.++|+++|+++|++||.|.+|++. +.||||||+|.+.++|++|++.|++.. +.|++|+|+|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 45678999999999999999999999999999999863 579999999999999999999999886 779999999997
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=135.78 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC--CccccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng--~~l~gr~L~V~~a~ 236 (829)
...+.++|||+|||+++|+++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 45678999999999999999999999999999999864 3589999999999999999998864 78999999999998
Q ss_pred CCCCC
Q 003329 237 PKDNP 241 (829)
Q Consensus 237 pk~~~ 241 (829)
++...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=9.3e-16 Score=136.71 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccC-CEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhc-CCcccccccccccc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 235 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG-~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Ln-g~~l~gr~L~V~~a 235 (829)
+++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8998874 57899999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 003329 236 IPKDNP 241 (829)
Q Consensus 236 ~pk~~~ 241 (829)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-15 Score=132.05 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003329 235 SIPKDNP 241 (829)
Q Consensus 235 a~pk~~~ 241 (829)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=3.9e-15 Score=138.18 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=71.8
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
..+|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++||+.|+|..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4689999999999999999999999999999763 3468999999999999999999999999999999999998765
Q ss_pred cc
Q 003329 325 AR 326 (829)
Q Consensus 325 ~r 326 (829)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 44
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=1.3e-14 Score=128.24 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999985 46689999999999999999999999999999999999998
Q ss_pred CCCC
Q 003329 237 PKDN 240 (829)
Q Consensus 237 pk~~ 240 (829)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 38
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=5.2e-15 Score=145.81 Aligned_cols=122 Identities=18% Similarity=0.274 Sum_probs=73.0
Q ss_pred EEEcCHHHHHHHHHHhcCCccc--cccccccccCCCC----------------CCCCCCCCcccceecccCCCCCHHHHH
Q 003329 205 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSDKDLNQGTLVVFNLDPSVSNEDLR 266 (829)
Q Consensus 205 V~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk~----------------~~~~~~~~~~tLfV~NLp~~vTeedL~ 266 (829)
.+|.+.++|+.|+..|++.... |+.+...+..... ..........+|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 5555555422110 011122345689999999999999999
Q ss_pred HHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCccc
Q 003329 267 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 267 ~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~r 326 (829)
++|++||.|..|++ ++.++|||||+|.+.++|++||..|||..|.|++|.|.++.++..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999976 3456899999999999999999999999999999999999876643
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=129.26 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=75.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999985 46689999999999999999999 99999999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=128.44 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999985 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003329 236 IPKDNP 241 (829)
Q Consensus 236 ~pk~~~ 241 (829)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=128.27 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999985 5668999999999999999999999999999999999999
Q ss_pred CCC
Q 003329 236 IPK 238 (829)
Q Consensus 236 ~pk 238 (829)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=131.23 Aligned_cols=83 Identities=16% Similarity=0.302 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999984 5678999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003329 233 HFSIPKDN 240 (829)
Q Consensus 233 ~~a~pk~~ 240 (829)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=129.91 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=74.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88764
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=1e-14 Score=126.30 Aligned_cols=77 Identities=27% Similarity=0.458 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999984 467799999999999999999999999999999999999987
Q ss_pred CC
Q 003329 238 KD 239 (829)
Q Consensus 238 k~ 239 (829)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=131.21 Aligned_cols=83 Identities=25% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe------cCCcceEEEEEEcCHHHHHHHHHHh-cCCccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 230 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~------t~kskG~AFV~F~d~e~A~~Ai~~L-ng~~l~gr~L 230 (829)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999985 4557999999999999999999999 9999999999
Q ss_pred cccccCCCCC
Q 003329 231 DIHFSIPKDN 240 (829)
Q Consensus 231 ~V~~a~pk~~ 240 (829)
.|.|+.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=131.44 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567899999999999999999999999999999985 367899999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 003329 232 IHFSIPKDN 240 (829)
Q Consensus 232 V~~a~pk~~ 240 (829)
|.|+.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987554
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=130.54 Aligned_cols=83 Identities=18% Similarity=0.408 Sum_probs=76.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4557899999999999999999999999999999985 3578999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003329 236 IPKDNP 241 (829)
Q Consensus 236 ~pk~~~ 241 (829)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887654
No 48
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=1.1e-14 Score=130.22 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
|+++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999985 36779999999999999999999999999999999999998
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 49
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.3e-14 Score=133.76 Aligned_cols=102 Identities=21% Similarity=0.405 Sum_probs=89.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...+|||+|||.++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 4579999999999999999999999999999987 45668999999999999999999999999999999999998765
Q ss_pred ccchhccccchhhcHHHHHHHHhhcCCC
Q 003329 325 ARRNLMLQLNQELEQDESRILQHQVGSP 352 (829)
Q Consensus 325 ~rr~~~~ql~~~~~~~~l~~~f~~~GsP 352 (829)
.. .++.....++++..++.++|..
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 33 4455667788889999999843
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=2.2e-14 Score=132.33 Aligned_cols=84 Identities=17% Similarity=0.381 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 5667999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003329 233 HFSIPKDNP 241 (829)
Q Consensus 233 ~~a~pk~~~ 241 (829)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=130.18 Aligned_cols=81 Identities=25% Similarity=0.452 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--------cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--------t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46799999999999999999999999999999984 2278899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003329 233 HFSIPKDNP 241 (829)
Q Consensus 233 ~~a~pk~~~ 241 (829)
.|+.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=131.35 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999984 56789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003329 234 FSIPKDN 240 (829)
Q Consensus 234 ~a~pk~~ 240 (829)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=2.8e-14 Score=129.34 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccc---cccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLD 231 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g---r~L~ 231 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.+ ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999984 45679999999999999999999999999998 9999
Q ss_pred ccccCCCCC
Q 003329 232 IHFSIPKDN 240 (829)
Q Consensus 232 V~~a~pk~~ 240 (829)
|.|+.++..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987654
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=128.83 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=74.2
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +..+|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456899999999999999999999999999999763 556899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88764
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=133.27 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=69.8
Q ss_pred ccceecccCCCCCHHHHHHHhcccC-CeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhC-CCeeCCcEEEEEecC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIAGKRIKLEPSR 321 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG-~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~Ln-G~~i~Gr~I~V~~a~ 321 (829)
.+|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|+ +..+.|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 8999876 46789999999999999999999875 568999999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=130.01 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999985 367889999999999999999999999999999999999
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=131.68 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
....+.++|||+|||.++|+++|+++|++||+|..|++ ..+++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34566899999999999999999999999999999985 4557899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=130.44 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=75.5
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..|.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445689999999999999999999999999999986 45678999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 003329 319 PSRPGGAR 326 (829)
Q Consensus 319 ~a~~~~~r 326 (829)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887643
No 59
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=135.87 Aligned_cols=85 Identities=24% Similarity=0.313 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC--Cccccccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHF 234 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng--~~l~gr~L~V~~ 234 (829)
.....++++|||+|||+++|+++|+++|++||+|.+|++. +.+|||||+|.+.++|++|++.|++ ..|.|++|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3455678999999999999999999999999999999864 3589999999999999999999874 689999999999
Q ss_pred cCCCCCCC
Q 003329 235 SIPKDNPS 242 (829)
Q Consensus 235 a~pk~~~~ 242 (829)
+.++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98765433
No 60
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.7e-14 Score=147.42 Aligned_cols=104 Identities=18% Similarity=0.314 Sum_probs=92.0
Q ss_pred CcccceecccC-CCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 247 NQGTLVVFNLD-PSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 247 ~~~tLfV~NLp-~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
...+|||+||| ..+|+++|+++|++||.|.+|++...++|||||+|.+.++|++||+.|||..+.|++|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 35789999999 89999999999999999999999877899999999999999999999999999999999999863210
Q ss_pred -----------------------------------------cchhccccchhhcHHHHHHHHhhcC
Q 003329 326 -----------------------------------------RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 326 -----------------------------------------rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
+..++.+++..+++++++.+|.++|
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 1134677888889999999999998
No 61
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=131.78 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCC--cccccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFS 235 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~--~l~gr~L~V~~a 235 (829)
....++++|||+|||+++++++|+++|++||+|..|.+. +.||||||+|.+.++|++|++.|++. .|.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345678999999999999999999999999999999863 36899999999999999999999765 489999999999
Q ss_pred CCCC
Q 003329 236 IPKD 239 (829)
Q Consensus 236 ~pk~ 239 (829)
.++.
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8654
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.4e-14 Score=133.86 Aligned_cols=85 Identities=15% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
.....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556799999999999999999999999999999884 567899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 003329 232 IHFSIPKDNP 241 (829)
Q Consensus 232 V~~a~pk~~~ 241 (829)
|.|+.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876543
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=131.52 Aligned_cols=81 Identities=17% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456789999999999999999999999999999985 36789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003329 234 FSIPKD 239 (829)
Q Consensus 234 ~a~pk~ 239 (829)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997754
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=129.48 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4567899999999999999999999999999999985 2347899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87654
No 65
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.3e-15 Score=142.21 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=98.9
Q ss_pred CCchhhccCCCCCCCcccceeecCCCCccccCCc-----c----------cc-------ccc----CCCCCCCCCCcEEE
Q 003329 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP-----Q----------ES-------LSM----REHPYGEHPSRTLF 167 (829)
Q Consensus 114 ~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~-----~----------~~-------~~~----ge~~~~e~~srtLf 167 (829)
+++.+|.++|..+|++.++.++.+..+....... . .+ +.+ ........+.++||
T Consensus 12 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~ 91 (166)
T 3md3_A 12 ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLF 91 (166)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEE
Confidence 7889999999999999999998776443211000 0 00 000 22233456688999
Q ss_pred EeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 168 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 168 V~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
|+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 92 v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 92 VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999984 46789999999999999999999999999999999999985
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-14 Score=128.58 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec---CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t---~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
....+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999852 34699999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003329 235 SIPKDNP 241 (829)
Q Consensus 235 a~pk~~~ 241 (829)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 67
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=126.15 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4568999999999999999999999999999999874 8999999999999999999999999999999999998765
Q ss_pred CC
Q 003329 240 NP 241 (829)
Q Consensus 240 ~~ 241 (829)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=129.47 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=74.7
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC------CCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCcEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIK 316 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit------~~srG~aFVeF~~~e~A~kAl~~L-nG~~i~Gr~I~ 316 (829)
......+|||+|||..+|+++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34467899999999999999999999999999999874 345899999999999999999999 99999999999
Q ss_pred EEecCCCcc
Q 003329 317 LEPSRPGGA 325 (829)
Q Consensus 317 V~~a~~~~~ 325 (829)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999988764
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=129.29 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
.....++|||+|||.++|+++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34467899999999999999999999999999999763 467899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.5e-14 Score=125.85 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999984 456899999999999999999999999999999999998
Q ss_pred cC
Q 003329 235 SI 236 (829)
Q Consensus 235 a~ 236 (829)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=129.89 Aligned_cols=82 Identities=22% Similarity=0.444 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999985 45689999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003329 234 FSIPKDN 240 (829)
Q Consensus 234 ~a~pk~~ 240 (829)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 72
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=126.09 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=69.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3578999999999999999999999999999976 45568999999999999999999999999999999999998
Q ss_pred CC
Q 003329 322 PG 323 (829)
Q Consensus 322 ~~ 323 (829)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 73
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=2.9e-14 Score=137.63 Aligned_cols=103 Identities=28% Similarity=0.434 Sum_probs=93.9
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.++|||+|||.++|+++|+++|+.||.|.++++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999976 456679999999999999999999999999999999999987
Q ss_pred Ccc----cchhccccchhhcHHHHHHHHhhcC
Q 003329 323 GGA----RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 323 ~~~----rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
... +..++.+++..+++++++..|.++|
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 113 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYG 113 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcC
Confidence 654 3457899999999999999999987
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=134.08 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=72.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG--~~i~Gr~I~V~~a~~~~ 324 (829)
...+|||+|||+++|+++|+++|++||.|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|++++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 467999999999999999999999999999999864 489999999999999999998874 78999999999998876
Q ss_pred cc
Q 003329 325 AR 326 (829)
Q Consensus 325 ~r 326 (829)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 75
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=131.84 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334567899999999999999999999999999999984 467899999999999999999999999999999999
Q ss_pred ccccCCCC
Q 003329 232 IHFSIPKD 239 (829)
Q Consensus 232 V~~a~pk~ 239 (829)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998754
No 76
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=130.17 Aligned_cols=81 Identities=30% Similarity=0.470 Sum_probs=73.6
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit--~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.....+|||+|||.++|+++|+++|++||.|..|++. +.+++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3456899999999999999999999999999999873 34689999999999999999999999999999999999988
Q ss_pred Ccc
Q 003329 323 GGA 325 (829)
Q Consensus 323 ~~~ 325 (829)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=128.43 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=75.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhc-cCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCc-cccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~-fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~-l~gr~L~V 232 (829)
...+.++|||+|||.++|+++|+++|++ ||+|..|++ +++++|||||+|.+.++|++|++.|++.. |.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4456899999999999999999999999 999999985 56789999999999999999999999999 99999999
Q ss_pred cccCCCCC
Q 003329 233 HFSIPKDN 240 (829)
Q Consensus 233 ~~a~pk~~ 240 (829)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977654
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=2.2e-14 Score=124.14 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999976 3566899999999999999999999999999999999999876
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=129.45 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=75.3
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
+.....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3445689999999999999999999999999999976 45678999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 003329 319 PSRPGGAR 326 (829)
Q Consensus 319 ~a~~~~~r 326 (829)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887643
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-14 Score=130.22 Aligned_cols=84 Identities=20% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhc------CCccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLR 226 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Ln------g~~l~ 226 (829)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34567899999999999999999999999999999985 35789999999999999999999999 99999
Q ss_pred cccccccccCCCCCC
Q 003329 227 RRKLDIHFSIPKDNP 241 (829)
Q Consensus 227 gr~L~V~~a~pk~~~ 241 (829)
|++|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=132.64 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCc--ccccccccccc
Q 003329 159 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 235 (829)
Q Consensus 159 ~e~~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~--l~gr~L~V~~a 235 (829)
...++++|||+|||+ ++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 99999999999999999999864 467999999999999999999998754 89999999999
Q ss_pred CCCC
Q 003329 236 IPKD 239 (829)
Q Consensus 236 ~pk~ 239 (829)
....
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7544
No 82
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.7e-14 Score=130.27 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhc--CCcccccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFS 235 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Ln--g~~l~gr~L~V~~a 235 (829)
....++++|||+|||+++++++|+++|++||+|..|.+. +.+|||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 445678999999999999999999999999999999864 359999999999999999999875 57799999999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86543
No 83
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=131.26 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=71.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~--i~Gr~I~V~~a~~~~ 324 (829)
+.++|||+|||+++|+++|+++|++||.|.+|++. +.||||||+|.+.++|.+|++.|++.. +.|++|.|+||+++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 56799999999999999999999999999999985 468999999999999999999999885 789999999998764
No 84
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.6e-14 Score=128.30 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=74.8
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC---CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~---~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....++|||+|||.++|+++|+++|++||.|.+|++.. .++|||||+|.+.++|++|++.|+|..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34568999999999999999999999999999998743 358999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003329 322 PGGARR 327 (829)
Q Consensus 322 ~~~~rr 327 (829)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=126.25 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=72.0
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
.....+|||+|||.++|+++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999763 56789999999999999999999999999999999999
Q ss_pred cCC
Q 003329 320 SRP 322 (829)
Q Consensus 320 a~~ 322 (829)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=5.2e-15 Score=167.90 Aligned_cols=146 Identities=24% Similarity=0.356 Sum_probs=105.0
Q ss_pred HHHHHhhccCCEEEEEe-------cCCcceEE-----EEEEcCHHHHHHHHHHhcCCccccc-----------cc--ccc
Q 003329 179 ELRALFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-----------KL--DIH 233 (829)
Q Consensus 179 eLr~lFs~fG~I~sv~~-------t~kskG~A-----FV~F~d~e~A~~Ai~~Lng~~l~gr-----------~L--~V~ 233 (829)
.|..||.++|+|..|.. ..+..+|+ |+.|....++..++..++......+ .+ .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899999999988731 11233444 7788776655544433322221111 00 111
Q ss_pred ccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003329 234 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 308 (829)
Q Consensus 234 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~ 308 (829)
...+...+........+|||+|||..+|+++|+++|++||.|+.|.+ ++.++|||||+|.+.++|.+||..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 12222222223344579999999999999999999999999999976 4567999999999999999999999999
Q ss_pred eeCCcEEEEEecCCCc
Q 003329 309 DIAGKRIKLEPSRPGG 324 (829)
Q Consensus 309 ~i~Gr~I~V~~a~~~~ 324 (829)
.|.|+.|.|.++.+..
T Consensus 168 ~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRT 183 (437)
T ss_pred EECCEEEEEEEeCCCC
Confidence 9999999999998754
No 87
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=127.61 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccc--cccccccccCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 237 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~p 237 (829)
..+.++|||+|||.++++++|+++|++||+|..|++.. .+|||||+|.+.++|++|++.|++..+. |++|.|.|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 45679999999999999999999999999999998643 4899999999999999999999999999 99999999987
Q ss_pred CC
Q 003329 238 KD 239 (829)
Q Consensus 238 k~ 239 (829)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=4.3e-14 Score=130.38 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.7
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
.....+|||+|||.++|+++|+++|++||.|..|++ ++..+|||||+|.+.++|++||+.|+|..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999976 455689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003329 320 SRPGGAR 326 (829)
Q Consensus 320 a~~~~~r 326 (829)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=127.59 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566899999999999999999999999999999985 3678999999999999999999999999999999999
Q ss_pred cccCC
Q 003329 233 HFSIP 237 (829)
Q Consensus 233 ~~a~p 237 (829)
+|+.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99863
No 90
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=6.4e-15 Score=132.87 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=67.9
Q ss_pred cccceecccCCCCCHHHHHHHhcccCC--eEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCcEEE
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGKRIK 316 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~--I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~----~i~Gr~I~ 316 (829)
-.||||+|||+++|+++|+++|++||. |.+|++ ++.+||||||+|.+.++|++|++.|||. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 567765 4678999999999999999999999997 48999999
Q ss_pred EEecCC
Q 003329 317 LEPSRP 322 (829)
Q Consensus 317 V~~a~~ 322 (829)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=129.10 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEE-Ee-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv-~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.+.++|||+|||.++++++|+++|++||.|..| ++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999887 64 456899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003329 235 SIPKDNP 241 (829)
Q Consensus 235 a~pk~~~ 241 (829)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=127.55 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4556899999999999999999999999999999985 35688999999999999999999999999999999999
Q ss_pred ccC
Q 003329 234 FSI 236 (829)
Q Consensus 234 ~a~ 236 (829)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 93
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=2.5e-14 Score=132.07 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=74.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35679999999999999999999999999999876 4567899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 887643
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-14 Score=128.15 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..-|||+||++.+|+++|+++|.+||+|+++++. .++|||||+|.+.++|++|++.||++.+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999985 379999999999999999999999999999999999993
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=2.9e-14 Score=123.96 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=70.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4679999999999999999999999999999976 34579999999999999999999999999999999999985
No 96
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=126.60 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.....+.++|||+|||.++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3456678999999999999999999999999999999864 6699999999999999999999999999999999998
Q ss_pred CCCC
Q 003329 237 PKDN 240 (829)
Q Consensus 237 pk~~ 240 (829)
++..
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=127.00 Aligned_cols=81 Identities=22% Similarity=0.441 Sum_probs=73.7
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++ |++..+.|++|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999873 4578999999999999999998 999999999999999
Q ss_pred cCCCccc
Q 003329 320 SRPGGAR 326 (829)
Q Consensus 320 a~~~~~r 326 (829)
++++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9887643
No 98
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=3.5e-14 Score=126.88 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.7
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|+|..+.|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999873 56689999999999999999999999999999999999998
Q ss_pred Ccc
Q 003329 323 GGA 325 (829)
Q Consensus 323 ~~~ 325 (829)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=127.21 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
..+.+.++|||+|||+++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567899999999999999999999999999999985 35679999999999999999999999999999999999
Q ss_pred ccC
Q 003329 234 FSI 236 (829)
Q Consensus 234 ~a~ 236 (829)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-14 Score=129.66 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 346899999999999999999999999999999864 78999999999999999999999999999999999999753
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=124.84 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=72.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC-----C-cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~-----~-srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
..++|||+|||.++|+++|+++|++||.|.++++.. . .+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999998631 2 6899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=3.2e-14 Score=129.21 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcc---ccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKL 230 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l---~gr~L 230 (829)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4567899999999999999999999999999999984 467899999999999999999999999988 89999
Q ss_pred cccccCCCCC
Q 003329 231 DIHFSIPKDN 240 (829)
Q Consensus 231 ~V~~a~pk~~ 240 (829)
.|.|+.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=131.07 Aligned_cols=83 Identities=20% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCE----EEEE-ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I----~sv~-~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....++++|||+|||.++|+++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344578999999999999999999999999998 4444 47889999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003329 233 HFSIPKDN 240 (829)
Q Consensus 233 ~~a~pk~~ 240 (829)
.|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987654
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=125.82 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=72.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3578999999999999999999999999999976 35568999999999999999999999999999999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 105
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=3.4e-14 Score=134.87 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
.....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345667899999999999999999999999999999985 367899999999999999999999999999999999
Q ss_pred ccccCCCC
Q 003329 232 IHFSIPKD 239 (829)
Q Consensus 232 V~~a~pk~ 239 (829)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 106
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=129.72 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999985 35689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 107
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=127.80 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.4
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit--------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
..++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|+|..|.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999999763 2568999999999999999999999999999999999
Q ss_pred ecCCCcc
Q 003329 319 PSRPGGA 325 (829)
Q Consensus 319 ~a~~~~~ 325 (829)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988764
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.9e-14 Score=133.55 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=71.8
Q ss_pred cccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccC-CeEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 229 KLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 229 ~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG-~I~~vrit-~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
++.+.|..+. ....+|||+|||+++|+++|+++|++|| +|..+++. .+++|||||+|.+.++|++||+.||
T Consensus 16 ~~~~~~~~~p-------~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 16 PRGSHMSKLP-------AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp ---------C-------CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred ecchhcCCCC-------CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcC
Confidence 4556665431 2357899999999999999999999999 99999884 5689999999999999999999999
Q ss_pred CCeeCCcEEEEEecCCCc
Q 003329 307 RSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 307 G~~i~Gr~I~V~~a~~~~ 324 (829)
|.++.|++|+|++++.+.
T Consensus 89 g~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 89 NIEFRGSVITVERDDNPP 106 (111)
T ss_dssp TEEETTEEEEEEESCC--
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999987653
No 109
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=9.6e-15 Score=129.26 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=66.1
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccC--CEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG--~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.+|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 8888873 67899999999999999999999999999999999999998
Q ss_pred CCCC
Q 003329 237 PKDN 240 (829)
Q Consensus 237 pk~~ 240 (829)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 110
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=2.7e-14 Score=130.92 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=82.0
Q ss_pred ccccccccccCCCCCCCCCCCCcccceecccCCC-CCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003329 226 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 304 (829)
Q Consensus 226 ~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~ 304 (829)
.|.+|.+..+.+.... ......++|||+|||.+ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4677777776554332 22334579999999999 999999999999999999999 689999999999999999999
Q ss_pred hCCCeeCCcEEEEEecCCCcc
Q 003329 305 LNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 305 LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
|+|..+.|++|+|++++++..
T Consensus 82 l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HTTCEETTEECCEEESCCCCS
T ss_pred cCCCEECCeEEEEEECCCCCC
Confidence 999999999999999986543
No 111
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.2e-14 Score=127.86 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=72.1
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHh--CCCeeCCcEEEEEecCCC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL--NRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~L--nG~~i~Gr~I~V~~a~~~ 323 (829)
...++|||+|||.++|+++|+++|++||.|.+|++.. .||||||+|.+.++|++|++.| ++..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3567999999999999999999999999999998864 4899999999999999999987 467899999999999887
Q ss_pred ccc
Q 003329 324 GAR 326 (829)
Q Consensus 324 ~~r 326 (829)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 644
No 112
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=5.5e-14 Score=127.38 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC---cEEEEE
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG---KRIKLE 318 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G---r~I~V~ 318 (829)
....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.| ++|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 356899999999999999999999999999999763 4558999999999999999999999999998 999999
Q ss_pred ecCCCcccc
Q 003329 319 PSRPGGARR 327 (829)
Q Consensus 319 ~a~~~~~rr 327 (829)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 113
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=127.81 Aligned_cols=81 Identities=11% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEE-EEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccc---
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK--- 229 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~-sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~--- 229 (829)
...+.++|||+|||+++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 8874 4678899999999999999999999999999999
Q ss_pred -ccccccCCCC
Q 003329 230 -LDIHFSIPKD 239 (829)
Q Consensus 230 -L~V~~a~pk~ 239 (829)
|+|.|+.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 114
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=7e-14 Score=127.81 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhC------CCeeCCcE
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLN------RSDIAGKR 314 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~Ln------G~~i~Gr~ 314 (829)
....+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|+ +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456799999999999999999999999999999874 5679999999999999999999999 99999999
Q ss_pred EEEEecCCCccc
Q 003329 315 IKLEPSRPGGAR 326 (829)
Q Consensus 315 I~V~~a~~~~~r 326 (829)
|+|+++.++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999887643
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=125.04 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
...++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|+|..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356899999999999999999999999999999986 79999999999999999999999999999999999988764
No 116
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=1.4e-14 Score=144.14 Aligned_cols=138 Identities=18% Similarity=0.286 Sum_probs=100.6
Q ss_pred cccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-Ccccc-----CCcc--------------cc--cc
Q 003329 95 NPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-GMELE-----GEPQ--------------ES--LS 152 (829)
Q Consensus 95 ~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-G~~l~-----~~~~--------------~~--~~ 152 (829)
...++..||.+ +++.+|..+|..+|++.++.++.+.. |.... .... .+ +.
T Consensus 14 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 14 RKLFIGGLSFE--------TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp GEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 34556667777 79999999999999999999987632 21111 0000 00 00
Q ss_pred c--------CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHH
Q 003329 153 M--------REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 219 (829)
Q Consensus 153 ~--------ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~ 219 (829)
+ ...+....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 0 111222345689999999999999999999999999999984 567899999999999999999985
Q ss_pred hcCCccccccccccccCCCCCC
Q 003329 220 LQNKPLRRRKLDIHFSIPKDNP 241 (829)
Q Consensus 220 Lng~~l~gr~L~V~~a~pk~~~ 241 (829)
++..|.|+.|.|.|+.++...
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp -SCCEETTEECEEEECC-----
T ss_pred -CCcEECCEEEEEEecCChhHh
Confidence 799999999999999887654
No 117
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=131.21 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=69.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCC--EEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCc----cccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGD--IRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP----LRRR 228 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~--I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~----l~gr 228 (829)
+..-.||||+|||+++|+++|+++|++||. |.+|++ +++++|||||+|.+.++|++|++.|++.. |.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445689999999999999999999999995 556763 57899999999999999999999999974 8899
Q ss_pred cccccccCC
Q 003329 229 KLDIHFSIP 237 (829)
Q Consensus 229 ~L~V~~a~p 237 (829)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=125.76 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC--CcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~--Gr~I~V~~a~~~~ 324 (829)
..++|||+|||.++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..+. |++|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4579999999999999999999999999999998643 899999999999999999999999999 9999999998875
Q ss_pred c
Q 003329 325 A 325 (829)
Q Consensus 325 ~ 325 (829)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=124.35 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=70.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++++++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456899999999999999999999999999999873 456899999999999999999999999999999999998
Q ss_pred C
Q 003329 321 R 321 (829)
Q Consensus 321 ~ 321 (829)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 120
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=126.61 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=72.3
Q ss_pred CcccceecccCCCCCHHHHH----HHhcccCCeEEEEeCCC--cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~----~iFs~fG~I~~vrit~~--srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...+|||+|||.++++++|+ ++|++||.|.+|++... .++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 99999999999988532 2899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
++...
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=4.5e-14 Score=144.25 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=94.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999976 4667999999999999999999999999999999999998
Q ss_pred CCCcc------cchhccccchhhcHHHHHHHHhhcC
Q 003329 321 RPGGA------RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 321 ~~~~~------rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
..... .+.++.++...+++++++.+|.+||
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcC
Confidence 76543 3457899999999999999999997
No 122
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=3.2e-14 Score=130.16 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999985 46679999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003329 234 FSIPKD 239 (829)
Q Consensus 234 ~a~pk~ 239 (829)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=128.62 Aligned_cols=82 Identities=16% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec------CCcceEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 230 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L 230 (829)
+....+.++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556789999999999999999999999999 9999852 678999999999999999999 899999999999
Q ss_pred cccccCCCCC
Q 003329 231 DIHFSIPKDN 240 (829)
Q Consensus 231 ~V~~a~pk~~ 240 (829)
.|.++.++..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=1.8e-14 Score=127.91 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4778999999999999999999999999999986 448999999999999999999999999999999999987
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=123.70 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHh-cCCccccccccccccC
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 236 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~L-ng~~l~gr~L~V~~a~ 236 (829)
....+.++|||+|||.++++++|+++|++||+|..|++. +++|||||+|.+.++|++|++.| ++..+.|++|.|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345678999999999999999999999999999999864 47899999999999999999999 9999999999999973
No 126
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=128.24 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=74.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|.+|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356899999999999999999999999999999863 457899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887643
No 127
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=127.79 Aligned_cols=80 Identities=30% Similarity=0.515 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|||.++|+++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567999999999999999999999999999999864 56999999999999999999999999999999999999875
Q ss_pred C
Q 003329 239 D 239 (829)
Q Consensus 239 ~ 239 (829)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=5.4e-14 Score=136.35 Aligned_cols=103 Identities=24% Similarity=0.393 Sum_probs=93.2
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 578999999999999999999999999999976 345679999999999999999999999999999999999987
Q ss_pred Ccc----cchhccccchhhcHHHHHHHHhhcC
Q 003329 323 GGA----RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 323 ~~~----rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
... +..++.+++..+++++++.+|.++|
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 114 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYG 114 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSS
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCC
Confidence 553 3457889999999999999998887
No 129
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=128.37 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=73.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999873 567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
++...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 130
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=4e-14 Score=129.50 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=74.0
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||..+|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 456799999999999999999999999999999873 456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 877643
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=124.41 Aligned_cols=78 Identities=12% Similarity=0.325 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec------CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..++|||+|||.++++++|+++|++||+|..|++. ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 36899999999999999999999999999999841 238999999999999999999999999999999999999
Q ss_pred CCCC
Q 003329 236 IPKD 239 (829)
Q Consensus 236 ~pk~ 239 (829)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 132
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=129.28 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=73.3
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999863 56689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003329 320 SRPGG 324 (829)
Q Consensus 320 a~~~~ 324 (829)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 133
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.7e-14 Score=126.13 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=73.8
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC---CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~---~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....++|||+|||.++|+++|+++|++||.|.+|++.. ..+|||||+|.+.++|++|++.|+|..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 44568999999999999999999999999999998742 358999999999999999999999999999999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 134
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=1.5e-14 Score=130.94 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCC------CCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccc-c
Q 003329 161 HPSRTLFVRNINS------NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-R 228 (829)
Q Consensus 161 ~~srtLfV~NLP~------~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g-r 228 (829)
..+++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999984 47899999999999999999999999999999 9
Q ss_pred cccccccCCC
Q 003329 229 KLDIHFSIPK 238 (829)
Q Consensus 229 ~L~V~~a~pk 238 (829)
+|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 135
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=134.33 Aligned_cols=81 Identities=27% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHH----HHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr----~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
...++++|||+|||+++++++|+ ++|++||+|.+|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568999999999999999876 69999999999985 4689999999999999999999999999999999999
Q ss_pred cccCCCC
Q 003329 233 HFSIPKD 239 (829)
Q Consensus 233 ~~a~pk~ 239 (829)
.|+.++.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 136
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=127.45 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.....++|||+|||+++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34557899999999999999999999999999622246789999999999999999999999999999999999999875
Q ss_pred C
Q 003329 239 D 239 (829)
Q Consensus 239 ~ 239 (829)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=4.3e-14 Score=124.90 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=73.3
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri---t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
...+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4679999999999999999999999999999976 4557899999999999999999999999999999999999887
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 138
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=127.16 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.5
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
.....+|||+|||.++|+++|+++|++||.|..+..++.++|||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34568999999999999999999999999998887778889999999999999999999999999999999999998876
Q ss_pred cc
Q 003329 325 AR 326 (829)
Q Consensus 325 ~r 326 (829)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 139
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=131.14 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999885 4678899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 140
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=4.8e-14 Score=132.13 Aligned_cols=83 Identities=18% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999999985 56779999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876543
No 141
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=7.7e-14 Score=132.91 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=75.2
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
.....++|||+|||.++|+++|+++|+.||.|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445689999999999999999999999999999976 35568999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 003329 319 PSRPGGAR 326 (829)
Q Consensus 319 ~a~~~~~r 326 (829)
+++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 142
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.2e-14 Score=129.01 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=71.3
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~--~i~Gr~I~V~~a~~~~ 324 (829)
..++|||+|||.++++++|+++|++||.|.+|++.. .||||||+|.+.++|.+|++.|++. .+.|++|+|+|++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 467999999999999999999999999999998854 5899999999999999999998765 5999999999998766
Q ss_pred cc
Q 003329 325 AR 326 (829)
Q Consensus 325 ~r 326 (829)
.+
T Consensus 93 ~~ 94 (104)
T 1wex_A 93 IT 94 (104)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 143
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=127.86 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 4566899999999999999999999999999999884 467889999999999999999998 9999999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99877643
No 144
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.7e-14 Score=129.87 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
..+.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34567899999999999999999999999999999985 466899999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 003329 233 HFSIPKDNP 241 (829)
Q Consensus 233 ~~a~pk~~~ 241 (829)
+|+.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999776544
No 145
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=128.40 Aligned_cols=81 Identities=22% Similarity=0.481 Sum_probs=73.9
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999873 446899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887643
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=128.44 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.+.+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44568999999999999999999999999999888667889999999999999999999999999999999999999875
Q ss_pred C
Q 003329 239 D 239 (829)
Q Consensus 239 ~ 239 (829)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=126.52 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEE--------EEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 224 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~s--------v~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~ 224 (829)
....+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999988 763 46789999999999999999999999999
Q ss_pred cccccccccccC
Q 003329 225 LRRRKLDIHFSI 236 (829)
Q Consensus 225 l~gr~L~V~~a~ 236 (829)
+.|++|+|++|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 148
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=7.7e-15 Score=142.39 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=102.2
Q ss_pred cccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCC-CCccccCC-----cc-------------ccccc----
Q 003329 97 AIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSG-GGMELEGE-----PQ-------------ESLSM---- 153 (829)
Q Consensus 97 ~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~-gG~~l~~~-----~~-------------~~~~~---- 153 (829)
..+..||.+ +++.+|+++|..+|++.++.++.+. .|...... .. .+..+
T Consensus 6 l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 6 MFIGGLNWD--------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKR 77 (167)
T ss_dssp EEECSCCTT--------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEE
T ss_pred EEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEccccc
Confidence 445567767 7999999999999999999988763 22221100 00 00000
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
........+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|+
T Consensus 78 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 78 AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 111111234679999999999999999999999999999984 46789999999999999999998 999999999
Q ss_pred cccccccCCC
Q 003329 229 KLDIHFSIPK 238 (829)
Q Consensus 229 ~L~V~~a~pk 238 (829)
+|.|.|+.|+
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999999875
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-14 Score=127.10 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 159 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 159 ~e~~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...+.++|||+|||. ++++++|+++|++||+|..|++ ++|||||+|.+.++|++|++.|++..+.|++|.|.|+.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 345789999999998 9999999999999999999987 489999999999999999999999999999999999977
Q ss_pred CCCC
Q 003329 238 KDNP 241 (829)
Q Consensus 238 k~~~ 241 (829)
+..+
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 150
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=123.78 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999984 4677999999999999999999999999999999999876
Q ss_pred C
Q 003329 236 I 236 (829)
Q Consensus 236 ~ 236 (829)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.50 E-value=4e-14 Score=131.18 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 3578999999999999999999999999999999999
Q ss_pred cccC
Q 003329 233 HFSI 236 (829)
Q Consensus 233 ~~a~ 236 (829)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 152
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=127.36 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456899999999999999999999999999999884 356789999999999999999999999999999999999
Q ss_pred cCCC
Q 003329 235 SIPK 238 (829)
Q Consensus 235 a~pk 238 (829)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 153
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=3e-14 Score=127.16 Aligned_cols=81 Identities=23% Similarity=0.587 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHH----HHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr----~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
...++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34678999999999999999999 99999999999985 3467899999999999999999999999999999999
Q ss_pred cccCCCC
Q 003329 233 HFSIPKD 239 (829)
Q Consensus 233 ~~a~pk~ 239 (829)
.|+.++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 154
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.2e-14 Score=128.75 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=65.9
Q ss_pred ccceecccCCCCCHHHHHHHhcccC--CeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG--~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
.+|||+|||.++|+++|+++|++|| .|.++++ +++++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9988875 56779999999999999999999999999999999999998
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 155
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.3e-14 Score=123.32 Aligned_cols=78 Identities=28% Similarity=0.409 Sum_probs=72.3
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
.....+|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456899999999999999999999999999999985 5699999999999999999999999999999999998875
Q ss_pred c
Q 003329 325 A 325 (829)
Q Consensus 325 ~ 325 (829)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.5e-14 Score=123.73 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456899999999999999999999999999999985 5699999999999999999999999999999999998875
Q ss_pred c
Q 003329 325 A 325 (829)
Q Consensus 325 ~ 325 (829)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=7.2e-14 Score=126.47 Aligned_cols=83 Identities=19% Similarity=0.396 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
+....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456789999999999999999999999997 999884 4678999999999999999999 7999999999999
Q ss_pred ccccCCCCCC
Q 003329 232 IHFSIPKDNP 241 (829)
Q Consensus 232 V~~a~pk~~~ 241 (829)
|.|+.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 158
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-14 Score=129.45 Aligned_cols=79 Identities=28% Similarity=0.448 Sum_probs=73.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
..++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999977 455689999999999999999999999999999999999987
Q ss_pred Ccc
Q 003329 323 GGA 325 (829)
Q Consensus 323 ~~~ 325 (829)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 159
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=132.07 Aligned_cols=77 Identities=13% Similarity=0.270 Sum_probs=71.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
++..++|||+|||+++++++|+++|++||.|..|.+ .+++|||||+|.+.++|++|++.|+|..|.|++|.|.|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 345789999999999999999999999999999986 45899999999999999999999999999999999999864
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=5.8e-14 Score=127.45 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=74.2
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCee---CCcEEE
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIK 316 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i---~Gr~I~ 316 (829)
.....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4456899999999999999999999999999999873 45789999999999999999999999988 899999
Q ss_pred EEecCCCccc
Q 003329 317 LEPSRPGGAR 326 (829)
Q Consensus 317 V~~a~~~~~r 326 (829)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887643
No 161
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.4e-14 Score=127.79 Aligned_cols=81 Identities=14% Similarity=0.288 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
....++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34678999999999999999999999999999998643 39999999999999999999999999999999999998765
Q ss_pred CC
Q 003329 240 NP 241 (829)
Q Consensus 240 ~~ 241 (829)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=6.9e-14 Score=126.71 Aligned_cols=80 Identities=26% Similarity=0.508 Sum_probs=73.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|||.++|+++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..|.|++|.|.|+.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34567999999999999999999999999999999864 789999999999999999999999999999999999876
Q ss_pred CCC
Q 003329 239 DNP 241 (829)
Q Consensus 239 ~~~ 241 (829)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=7e-14 Score=125.88 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 158 YGEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
....++++|||+|||. ++++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|+|+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3456789999999998 9999999999999999999987 48999999999999999999999999999999999987
Q ss_pred CC
Q 003329 237 PK 238 (829)
Q Consensus 237 pk 238 (829)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 164
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=124.83 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356899999999999999999999999999999763 4568999999999999999999999999999999999987
Q ss_pred C
Q 003329 322 P 322 (829)
Q Consensus 322 ~ 322 (829)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=126.57 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=72.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEE-EeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v-rit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
..++|||+|||.++|+++|+++|++||.|..+ ++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999888 763 446899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887644
No 166
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=129.23 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEE--------EEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 225 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~--------sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l 225 (829)
...+.++|||+|||.++|+++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 4663 467899999999999999999999999999
Q ss_pred ccccccccccCCCCC
Q 003329 226 RRRKLDIHFSIPKDN 240 (829)
Q Consensus 226 ~gr~L~V~~a~pk~~ 240 (829)
.|++|.|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 167
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=130.46 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....+.++|||+|||.++++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999985 24579999999999999999999999999999999999
Q ss_pred ccCCC
Q 003329 234 FSIPK 238 (829)
Q Consensus 234 ~a~pk 238 (829)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 168
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=6.8e-14 Score=133.33 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4566899999999999999999999999999999985 45689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
|+.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 169
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=123.31 Aligned_cols=79 Identities=19% Similarity=0.403 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|||.++|+++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..+.|++|.|.|+.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567999999999999999999999999999999874 679999999999999999999999999999999999876
Q ss_pred CC
Q 003329 239 DN 240 (829)
Q Consensus 239 ~~ 240 (829)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.5e-14 Score=127.13 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccc-----cccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g-----r~L~V~ 233 (829)
.....++|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.|++..|.| ++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999986443 999999999999999999999999999 999999
Q ss_pred ccCCCCC
Q 003329 234 FSIPKDN 240 (829)
Q Consensus 234 ~a~pk~~ 240 (829)
++.++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987654
No 171
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=127.76 Aligned_cols=83 Identities=19% Similarity=0.401 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...+.++|||+|||.++|+++|+++|++||+|.-++. +++++|||||+|.+.++|++|++.|++..|.|+.|.|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4556899999999999999999999999999954432 567899999999999999999999999999999999999987
Q ss_pred CCCC
Q 003329 238 KDNP 241 (829)
Q Consensus 238 k~~~ 241 (829)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 172
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=130.38 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=73.3
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345789999999999999999999999999999884 466799999999999999999999999999999999999
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 97654
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=2.9e-14 Score=138.92 Aligned_cols=131 Identities=16% Similarity=0.290 Sum_probs=100.0
Q ss_pred cccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCC---cccc-----CCcc----------cc--------
Q 003329 97 AIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGG---MELE-----GEPQ----------ES-------- 150 (829)
Q Consensus 97 ~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG---~~l~-----~~~~----------~~-------- 150 (829)
..+..||.+ +++.+|.++|..+|++.+++++.+..+ .... .... ..
T Consensus 6 l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 6 MFVGQVPRT--------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp EEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred EEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 344556767 799999999999999999999876433 1111 0000 00
Q ss_pred cc--c---CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhc
Q 003329 151 LS--M---REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQ 221 (829)
Q Consensus 151 ~~--~---ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Ln 221 (829)
.. + ........+.++|||+|||.++|+++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 78 HPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp SCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 00 0 111222346789999999999999999999999999999984 45679999999999999999999999
Q ss_pred CCccc---ccccccccc
Q 003329 222 NKPLR---RRKLDIHFS 235 (829)
Q Consensus 222 g~~l~---gr~L~V~~a 235 (829)
|..+. +++|.|.||
T Consensus 158 g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp TSCCCTTCSSCCEEEEC
T ss_pred CCcccCCCCCCeEEEec
Confidence 98876 499999987
No 174
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=4.4e-14 Score=129.88 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.9
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.....++|||+|||.++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34566899999999999999999999999999999986 899999999999999999999999999999999999887
Q ss_pred ccc
Q 003329 324 GAR 326 (829)
Q Consensus 324 ~~r 326 (829)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 175
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=133.04 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=72.3
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG--~~i~Gr~I~V~~a~~~~ 324 (829)
..++|||+|||+++|+++|+++|++||.|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|++++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999999854 489999999999999999999984 68999999999998876
Q ss_pred ccc
Q 003329 325 ARR 327 (829)
Q Consensus 325 ~rr 327 (829)
.+.
T Consensus 109 ~~~ 111 (119)
T 2ad9_A 109 LKT 111 (119)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 176
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.4e-14 Score=126.23 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....+|||+|||.++|+++|+++|++|| |.+|++. +.++|||||+|.+.++|++|| .|++..|.|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999873 567899999999999999999 9999999999999999
Q ss_pred cCCCccc
Q 003329 320 SRPGGAR 326 (829)
Q Consensus 320 a~~~~~r 326 (829)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 177
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=128.42 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=73.2
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
.....+|||+|||..+|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 355689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003329 320 SRPGG 324 (829)
Q Consensus 320 a~~~~ 324 (829)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 178
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.1e-14 Score=127.93 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
...++|||+|||.++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|+|..|.|++|+|++++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34679999999999999999999999999999998654 89999999999999999999999999999999999988764
No 179
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8e-14 Score=127.15 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCC-EEEEEec------CCcceEEEEEEcCHHHHHHHHHHhc--CCcccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 231 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~-I~sv~~t------~kskG~AFV~F~d~e~A~~Ai~~Ln--g~~l~gr~L~ 231 (829)
.+.++|||+|||.++|+++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999853 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCCC
Q 003329 232 IHFSIPKDNPS 242 (829)
Q Consensus 232 V~~a~pk~~~~ 242 (829)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.9e-14 Score=124.95 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCcHHHHH----HHhhccCCEEEEEec--CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr----~lFs~fG~I~sv~~t--~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...++|||+|||+++++++|+ ++|++||+|.+|++. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999 999999999999863 22289999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003329 235 SIPKDN 240 (829)
Q Consensus 235 a~pk~~ 240 (829)
+.+...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 181
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.8e-14 Score=124.90 Aligned_cols=76 Identities=30% Similarity=0.424 Sum_probs=71.2
Q ss_pred CCcccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 246 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 246 ~~~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...++|||+|||. ++++++|+++|++||.|.+|++ .+|||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3568999999998 9999999999999999999998 38999999999999999999999999999999999998754
No 182
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=129.34 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=70.1
Q ss_pred CcccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCcEEEEEecCCC
Q 003329 247 NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPG 323 (829)
Q Consensus 247 ~~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~--~i~Gr~I~V~~a~~~ 323 (829)
...+|||+|||+ ++|+++|+++|++||.|.+|++.. .++||||+|.+.++|++|++.|++. .|.|++|+|.+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467899999999 999999999999999999999863 5799999999999999999999865 599999999999864
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 183
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=8.6e-14 Score=126.08 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=73.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
.+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|.|++|+|++++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 346899999999999999999999999999999985 67999999999999999999999999999999999988765
Q ss_pred cc
Q 003329 326 RR 327 (829)
Q Consensus 326 rr 327 (829)
++
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 184
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=8.8e-14 Score=132.03 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=73.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++|+++|+++|++||.|.+|++ ++..+|||||+|.+.++|++||+.|+|..|.|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999986 3567999999999999999999999999999999999999
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8765
No 185
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=7.7e-14 Score=126.86 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999884 467899999999999999999999999999999999998
Q ss_pred cC
Q 003329 235 SI 236 (829)
Q Consensus 235 a~ 236 (829)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 186
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-14 Score=133.33 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCC-CcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC--CccccccccccccC
Q 003329 160 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 236 (829)
Q Consensus 160 e~~srtLfV~NLP~~-vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng--~~l~gr~L~V~~a~ 236 (829)
..++++|||+|||++ +++++|+++|++||+|.+|++ .+++|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567899999999998 999999999999999999986 46799999999999999999999865 55999999999997
Q ss_pred CCCC
Q 003329 237 PKDN 240 (829)
Q Consensus 237 pk~~ 240 (829)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6543
No 187
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=123.74 Aligned_cols=79 Identities=20% Similarity=0.396 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhcc--CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~f--G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...+.++|||+|||+++|+++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34568999999999999999999999999 99999975 48999999999999999999999999999999999998
Q ss_pred CCCC
Q 003329 237 PKDN 240 (829)
Q Consensus 237 pk~~ 240 (829)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 188
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=126.35 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
....+|||+|||.++|+++|+++|++||.|....+++.++|||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999996333456789999999999999999999999999999999999998865
No 189
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=133.81 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEE--EEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCC----ccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PLR 226 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~s--v~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~----~l~ 226 (829)
....+.++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|++|++.|++. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567899999999999999999999999999966 663 678999999999999 999999999999 999
Q ss_pred cccccccccCCCCC
Q 003329 227 RRKLDIHFSIPKDN 240 (829)
Q Consensus 227 gr~L~V~~a~pk~~ 240 (829)
|++|.|.|+.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987654
No 190
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=4.9e-14 Score=129.57 Aligned_cols=80 Identities=24% Similarity=0.487 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...+.+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|+|..+.|++|.|.|+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456678999999999999999999999999999999875 8999999999999999999999999999999999998
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
++.
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 191
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9.1e-14 Score=127.98 Aligned_cols=80 Identities=13% Similarity=0.303 Sum_probs=72.5
Q ss_pred CCCcccceecccCCCCCHHHHH---HHhcccCCeEEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhCCCeeCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 313 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~---~iFs~fG~I~~vrit~--------~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr 313 (829)
.....+|||+|||+++++++|+ ++|++||.|.+|++.. ..+|||||+|.+.++|++||+.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999998732 3458999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 003329 314 RIKLEPSRPGG 324 (829)
Q Consensus 314 ~I~V~~a~~~~ 324 (829)
+|+|+++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.2e-14 Score=129.32 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 243 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 243 ~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
......++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|+|..+.|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344566899999999999999999999999999999874 33589999999999999999999999999999999999
Q ss_pred cCCC
Q 003329 320 SRPG 323 (829)
Q Consensus 320 a~~~ 323 (829)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 193
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=122.93 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=71.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhccc--CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~f--G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
...++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 999999874 789999999999999999999999999999999999887
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 194
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=120.85 Aligned_cols=76 Identities=30% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCcEEEEEecC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSR 321 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~L-nG~~i~Gr~I~V~~a~ 321 (829)
+....+|||+|||.++|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.| +|..+.|++|+|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34568999999999999999999999999999999863 6899999999999999999999 9999999999999985
No 195
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=125.18 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=70.3
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~--------vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
.....+|||+|||.++|+++|+++|++||.|.+ |++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999998 765 3567899999999999999999999999999
Q ss_pred CcEEEEEecC
Q 003329 312 GKRIKLEPSR 321 (829)
Q Consensus 312 Gr~I~V~~a~ 321 (829)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 196
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=126.42 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=71.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-----cEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G-----r~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|..|++... |||||+|.+.++|++||+.|||..|.| ++|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4679999999999999999999999999999998644 999999999999999999999999999 999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 197
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=8.8e-14 Score=126.80 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=73.0
Q ss_pred CCCCCcEEEEeCCCCCC------cHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccc-
Q 003329 159 GEHPSRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 228 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~v------TeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr- 228 (829)
.....++|||+|||+.+ |+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44557899999999999 88999999999999999985 467899999999999999999999999999999
Q ss_pred cccccccCCC
Q 003329 229 KLDIHFSIPK 238 (829)
Q Consensus 229 ~L~V~~a~pk 238 (829)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998653
No 198
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.2e-14 Score=127.38 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..++|||+|||.++|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|+..|||..+.|++|+|++++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45799999999999999999999999999999986 57899999999999999999999999999999999999764
No 199
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=8.1e-14 Score=122.17 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999984 5678999999999999999999 899999999999999987
Q ss_pred CC
Q 003329 237 PK 238 (829)
Q Consensus 237 pk 238 (829)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 200
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=8.2e-14 Score=129.03 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cC
Q 003329 320 SR 321 (829)
Q Consensus 320 a~ 321 (829)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 201
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=125.78 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=72.6
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||.++|+++|+++|++||.|.+|++. +..+|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 346799999999999999999999999999999763 4458999999999999999999999999999999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6553
No 202
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-13 Score=125.13 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcc--------c
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 226 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l--------~ 226 (829)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456799999999999999999999999999999985 467899999999999999999999999999 5
Q ss_pred cccccccccCCC
Q 003329 227 RRKLDIHFSIPK 238 (829)
Q Consensus 227 gr~L~V~~a~pk 238 (829)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888888754
No 203
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=126.42 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhcc-cCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCcEEEEEe
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD-IAGKRIKLEP 319 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~-fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~-i~Gr~I~V~~ 319 (829)
....+|||+|||.++|+++|+++|++ ||.|.+|++ ++.++|||||+|.+.++|++|++.|+|.. +.|++|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34679999999999999999999999 999999976 45679999999999999999999999999 9999999999
Q ss_pred cCCCcccc
Q 003329 320 SRPGGARR 327 (829)
Q Consensus 320 a~~~~~rr 327 (829)
+.++..++
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876543
No 204
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=127.38 Aligned_cols=79 Identities=18% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe------cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~------t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 999985 4567999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 003329 233 HFSIPKD 239 (829)
Q Consensus 233 ~~a~pk~ 239 (829)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 205
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.2e-14 Score=125.52 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCC-EEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC-CccccccccccccCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIP 237 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~-I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng-~~l~gr~L~V~~a~p 237 (829)
..+.++|||+|||.++|+++|+++|++||+ |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|.|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 456799999999999999999999999999 666654 4789999999999999999999999 999999999999987
Q ss_pred CCCC
Q 003329 238 KDNP 241 (829)
Q Consensus 238 k~~~ 241 (829)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 206
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.3e-13 Score=134.26 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999985 56789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003329 234 FSIPKD 239 (829)
Q Consensus 234 ~a~pk~ 239 (829)
|+.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998654
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=132.49 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.9
Q ss_pred CcccceecccCCCCCHHHHH----HHhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~----~iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...+|||+|||+.+++++|+ ++|++||.|.+|.+ +++++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 46789999999999999876 69999999999987 4578999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+.+...
T Consensus 108 ~~~~~~ 113 (127)
T 2a3j_A 108 ETPQSQ 113 (127)
T ss_dssp CCCCHH
T ss_pred cCcchh
Confidence 987643
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=1.1e-13 Score=133.79 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=75.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|||+++|+++|+++|++||+|.+|++...++|||||+|.+.++|++|++.|+|..|.|++|.|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 44567999999999999999999999999999999987668999999999999999999999999999999999999765
No 209
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.8e-14 Score=124.98 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=72.8
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...++|||+|||.++|+++|+++|++||.|..|++. +.+|||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 356799999999999999999999999999999986 458999999999999999999999999999999999998865
No 210
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-14 Score=120.65 Aligned_cols=71 Identities=15% Similarity=0.362 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCC------cHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccc-cccc
Q 003329 163 SRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 232 (829)
Q Consensus 163 srtLfV~NLP~~v------TeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr-~L~V 232 (829)
+++|||+|||.++ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999985 457899999999999999999999999999999 8887
Q ss_pred c
Q 003329 233 H 233 (829)
Q Consensus 233 ~ 233 (829)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=4.2e-14 Score=131.21 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccC-CEEEEEe-cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG-~I~sv~~-t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..|.|++|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4568999999999999999999999999 9999987 467899999999999999999999999999999999999864
No 212
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=126.99 Aligned_cols=81 Identities=26% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
.+...++|||+|||.++|+++|+++|++||.|.+|++. ++++|||||+|.+.++|++||+.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34466899999999999999999999999999999873 45689999999999999999999998 8999999999
Q ss_pred ecCCCcc
Q 003329 319 PSRPGGA 325 (829)
Q Consensus 319 ~a~~~~~ 325 (829)
++.++..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987653
No 213
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=9.7e-14 Score=127.23 Aligned_cols=78 Identities=24% Similarity=0.495 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCC-CcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 159 GEHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~-vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
.....++|||+|||.+ +++++|+++|++||+|..|++ ++|||||+|.+.++|++|++.|++..|.|++|.|.|+.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445689999999999 999999999999999999987 789999999999999999999999999999999999975
Q ss_pred CC
Q 003329 238 KD 239 (829)
Q Consensus 238 k~ 239 (829)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 214
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=8.3e-14 Score=132.70 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.6
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCcc
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGGA 325 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~-aFVeF~~~e~A~kAl~~LnG~~i~G--r~I~V~~a~~~~~ 325 (829)
-.|||+||++.+|+++|+++|++||.|.+|++..+.+|| |||+|.+.++|++|++.|||..|.| ++|+|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 468899999999999999999999999999886667788 9999999999999999999999988 9999999998764
No 215
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1e-13 Score=121.51 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.4
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++|+++|+++|++||.|.++++ ++.++|||||+|.+.++|++|+ .|+|..+.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999976 4566999999999999999999 899999999999999998
Q ss_pred CC
Q 003329 322 PG 323 (829)
Q Consensus 322 ~~ 323 (829)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 216
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.47 E-value=9.3e-14 Score=121.59 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.+.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..|.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999984 47789999999999999999997 68888999999998
Q ss_pred cc
Q 003329 234 FS 235 (829)
Q Consensus 234 ~a 235 (829)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.7e-14 Score=127.56 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeE--------EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~--------~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
....++|||+|||.++|+++|+++|++||.|. .|++ ++..+|||||+|.+.++|++||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44568999999999999999999999999998 5765 3566899999999999999999999999999
Q ss_pred CcEEEEEecCCCcc
Q 003329 312 GKRIKLEPSRPGGA 325 (829)
Q Consensus 312 Gr~I~V~~a~~~~~ 325 (829)
|++|+|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999988764
No 218
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.2e-14 Score=125.58 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE--ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~--~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 456789999999999999999999999998877766 367789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003329 237 PKDNP 241 (829)
Q Consensus 237 pk~~~ 241 (829)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 219
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=9.6e-14 Score=130.06 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=73.9
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999987 4556999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 220
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.9e-13 Score=123.61 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=71.6
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++|+++|+++|++|| |.+|++ ++..+|||||+|.+.++|++|+ .|||..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 999976 3567899999999999999999 89999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887643
No 221
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=124.66 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=72.2
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
....++|||+|||.++|+++|+++|++||.|.-++. +++.+|||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345689999999999999999999999999844433 5667999999999999999999999999999999999999887
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 222
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=1.6e-13 Score=133.57 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=74.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++||+.||+..|.|++|+|++++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5689999999999999999999999999999987 45678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003329 322 PGGAR 326 (829)
Q Consensus 322 ~~~~r 326 (829)
+...+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76543
No 223
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=1.5e-13 Score=138.81 Aligned_cols=103 Identities=23% Similarity=0.384 Sum_probs=91.4
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 468999999999999999999999999999987 456799999999999999999999999999999999998876
Q ss_pred Ccc---------------cchhccccchhhcHHHHHHHHhhcC
Q 003329 323 GGA---------------RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 323 ~~~---------------rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
... +..++.++...++.++++.+|.+||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 150 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 150 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC
Confidence 542 3457889999999999999998886
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.1e-14 Score=131.28 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=71.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|++||.|..|++. +..+|||||+|.+.++|++|| .|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999874 567899999999999999999 99999999999999998
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
+++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 225
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=5.6e-14 Score=129.40 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHH---HHhhccCCEEEEEec--------CCcceEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 227 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr---~lFs~fG~I~sv~~t--------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g 227 (829)
.....++|||+|||+++++++|+ ++|++||+|..|++. .+++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999852 2466999999999999999999999999999
Q ss_pred ccccccccCCCC
Q 003329 228 RKLDIHFSIPKD 239 (829)
Q Consensus 228 r~L~V~~a~pk~ 239 (829)
++|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 226
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=3.5e-14 Score=128.43 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=71.6
Q ss_pred CcccceecccCC------CCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-cE
Q 003329 247 NQGTLVVFNLDP------SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KR 314 (829)
Q Consensus 247 ~~~tLfV~NLp~------~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G-r~ 314 (829)
..++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 9999999999999999999986 36789999999999999999999999999999 99
Q ss_pred EEEEecCCC
Q 003329 315 IKLEPSRPG 323 (829)
Q Consensus 315 I~V~~a~~~ 323 (829)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 227
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=123.36 Aligned_cols=84 Identities=23% Similarity=0.401 Sum_probs=74.2
Q ss_pred CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 243 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 243 ~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr--it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
......++|||+|||.++|+++|+++|+.|+.|.-++ .++.++|||||+|.+.++|++||+.|||..|.|++|+|+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3445678999999999999999999999998776665 35677899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987643
No 228
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=125.87 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCcccceecccCCCC------CHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc-EE
Q 003329 246 LNQGTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RI 315 (829)
Q Consensus 246 ~~~~tLfV~NLp~~v------TeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr-~I 315 (829)
...++|||+|||..+ |+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 789999999999999999874 46789999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 003329 316 KLEPSRPG 323 (829)
Q Consensus 316 ~V~~a~~~ 323 (829)
+|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 229
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=5.3e-14 Score=134.53 Aligned_cols=88 Identities=27% Similarity=0.457 Sum_probs=78.9
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
+..+....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344555667899999999999999999999999999999985 567899999999999999999999999999999
Q ss_pred cccccccCCCCCC
Q 003329 229 KLDIHFSIPKDNP 241 (829)
Q Consensus 229 ~L~V~~a~pk~~~ 241 (829)
+|.|.|+.++..+
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 230
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.6e-14 Score=127.16 Aligned_cols=77 Identities=27% Similarity=0.400 Sum_probs=72.1
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|+|..+.|++|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999998655799999999999999999999999999999999999988763
No 231
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=125.52 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345578999999999999999999999999986433 256789999999999999999999999999999999999
Q ss_pred ccCC
Q 003329 234 FSIP 237 (829)
Q Consensus 234 ~a~p 237 (829)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 232
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=124.24 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-----it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3457899999999999999999999999986543 24567899999999999999999999999999999999998
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 233
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=121.52 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|.|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4456899999996 8999999999999999999987 578999999999999999999999999999999999999876
Q ss_pred CC
Q 003329 239 DN 240 (829)
Q Consensus 239 ~~ 240 (829)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 234
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.46 E-value=2.5e-14 Score=133.64 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=71.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|+|..|.|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999976 4567999999999999999999 799999999999999998
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 235
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.5e-14 Score=124.27 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=70.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCC-eEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC-CeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-SDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~-I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG-~~i~Gr~I~V~~a~~~~ 324 (829)
..++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..+.|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4579999999999999999999999999 666666 3689999999999999999999999 99999999999998876
Q ss_pred cc
Q 003329 325 AR 326 (829)
Q Consensus 325 ~r 326 (829)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 236
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.1e-14 Score=128.28 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=71.7
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
..++|||+|||.++|+++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..+.|++|.|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999999999999999999985 478999999999999999999999999999999999997643
No 237
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=2.1e-13 Score=143.65 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=95.0
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 3456799999999999999999999999999999984 568999999999999999999999999999999999998754
Q ss_pred ccchhccccchhhcHHHHHHHHhhcC
Q 003329 325 ARRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 325 ~rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
..++.+++..++.+++..+|.+||
T Consensus 98 --~l~v~nl~~~~t~~~l~~~F~~~G 121 (261)
T 3sde_A 98 --ALTVKNLSPVVSNELLEQAFSQFG 121 (261)
T ss_dssp --EEEEESCCTTCCHHHHHHHHGGGS
T ss_pred --cccccCCCCCCCHHHHHHHHHhcC
Confidence 568999999999999999999987
No 238
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9.7e-14 Score=124.41 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=72.1
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeE-EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE----EE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR----IK 316 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~-~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~----I~ 316 (829)
..++|||+|||.++++++|+++|++||.|. +|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 468999999999999999999999999999 8876 4567899999999999999999999999999999 99
Q ss_pred EEecCCCc
Q 003329 317 LEPSRPGG 324 (829)
Q Consensus 317 V~~a~~~~ 324 (829)
|+++++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998765
No 239
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=136.62 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccC--CEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG--~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999984 678999999999999999999999999999999999999
Q ss_pred cCCC
Q 003329 235 SIPK 238 (829)
Q Consensus 235 a~pk 238 (829)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 240
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=1.8e-13 Score=133.01 Aligned_cols=82 Identities=28% Similarity=0.478 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455789999999999999999999999999999984 567999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003329 235 SIPKDNP 241 (829)
Q Consensus 235 a~pk~~~ 241 (829)
+.++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 241
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.9e-13 Score=124.30 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=70.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||..+|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34679999999999999999999999999999976 35678999999999999999999999999999999999985
No 242
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=4.3e-14 Score=125.60 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 344579999999999999999999999999986544 246789999999999999999999999999999999999
Q ss_pred ccC
Q 003329 234 FSI 236 (829)
Q Consensus 234 ~a~ 236 (829)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 243
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=126.17 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri------t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...++|||+|||.++++++|+++|++|| |.+|++ +++++|||||+|.+.++|++|+ .|+|..|.|++|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568999999999999999999999999 999986 3456899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 003329 320 SRPGG 324 (829)
Q Consensus 320 a~~~~ 324 (829)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 244
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=9.6e-14 Score=123.84 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=73.1
Q ss_pred CcccceecccCCCCCHHHHH----HHhcccCCeEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~----~iFs~fG~I~~vrit--~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...+|||+|||.++++++|+ ++|++||.|..|++. +..+|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999 999999999999874 356899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003329 321 RPGGA 325 (829)
Q Consensus 321 ~~~~~ 325 (829)
+++..
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 98764
No 245
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=124.60 Aligned_cols=80 Identities=33% Similarity=0.473 Sum_probs=73.0
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++||+. ++..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 445689999999999999999999999999999976 355689999999999999999998 99999999999999
Q ss_pred cCCCcc
Q 003329 320 SRPGGA 325 (829)
Q Consensus 320 a~~~~~ 325 (829)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 988764
No 246
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.7e-14 Score=126.44 Aligned_cols=80 Identities=23% Similarity=0.396 Sum_probs=73.4
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4579999999999999999999999999999976 35568999999999999999999999999999999999998
Q ss_pred CCccc
Q 003329 322 PGGAR 326 (829)
Q Consensus 322 ~~~~r 326 (829)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87643
No 247
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=125.77 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=70.8
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.+ +..+.|++|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456899999999999999999999999999999873 566899999999999999999976 5999999999999
Q ss_pred cCCCccc
Q 003329 320 SRPGGAR 326 (829)
Q Consensus 320 a~~~~~r 326 (829)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 248
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=8.6e-14 Score=124.60 Aligned_cols=77 Identities=30% Similarity=0.418 Sum_probs=71.3
Q ss_pred CCcccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 246 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 246 ~~~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...++|||+|||. ++|+++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 9999999999999999999998 48999999999999999999999999999999999998765
Q ss_pred c
Q 003329 325 A 325 (829)
Q Consensus 325 ~ 325 (829)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.4e-13 Score=120.83 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
....+|||+|| ++|+++|+++|++||.|.+|++ +..+|||||+|.+.++|++||+.|+|..|.|++|+|++++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35679999996 8999999999999999999998 46789999999999999999999999999999999999988754
No 250
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.1e-13 Score=122.10 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=72.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4556799999999999999999999999999999984 46789999999999999999999 4778999999999
Q ss_pred ccCCCCCC
Q 003329 234 FSIPKDNP 241 (829)
Q Consensus 234 ~a~pk~~~ 241 (829)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886554
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=2.1e-13 Score=127.60 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456789999999999999999999999999999985 456899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003329 235 SIPKDN 240 (829)
Q Consensus 235 a~pk~~ 240 (829)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976543
No 252
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=126.58 Aligned_cols=77 Identities=12% Similarity=0.314 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
+...++|||+|||+++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|+. +++..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445789999999999999999999999999999985 26789999999999999999999 9999999999999987
Q ss_pred CC
Q 003329 236 IP 237 (829)
Q Consensus 236 ~p 237 (829)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=126.86 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=72.9
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCe----EEEE-eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I----~~vr-it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||.++|+++|+++|++||.| ..++ .++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346899999999999999999999999998 4554 36788999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003329 321 RPGGAR 326 (829)
Q Consensus 321 ~~~~~r 326 (829)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 887643
No 254
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=2.3e-13 Score=140.61 Aligned_cols=105 Identities=23% Similarity=0.432 Sum_probs=92.4
Q ss_pred CCcccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 246 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 246 ~~~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...++|||+|||. ++|+++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.++++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 3568999999999 999999999999999999999987779999999999999999999999999999999999987541
Q ss_pred ---------------------------------------ccchhccccchhhcHHHHHHHHhhcC
Q 003329 325 ---------------------------------------ARRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 325 ---------------------------------------~rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
.+..++.++...+++++++.+|.++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 12245777888888888998888876
No 255
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=4.1e-13 Score=125.64 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34579999999999999999999999999999976 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 256
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.44 E-value=2.4e-13 Score=118.97 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=68.0
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ +++..+.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999976 35679999999999999999996 588899999999987
Q ss_pred c
Q 003329 320 S 320 (829)
Q Consensus 320 a 320 (829)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 257
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=120.82 Aligned_cols=79 Identities=9% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.....++|||+|||+++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567999999999999999999999999 8988874 56789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97653
No 258
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=9.7e-14 Score=129.03 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.7
Q ss_pred CcccceecccCCC-CCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCcEEEEEecCCC
Q 003329 247 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPG 323 (829)
Q Consensus 247 ~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG--~~i~Gr~I~V~~a~~~ 323 (829)
...+|||+|||++ +|+++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.|++ ..|.|++|+|.+++.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 4679999999998 9999999999999999999985 5689999999999999999998864 5699999999999876
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 103 ~~ 104 (112)
T 1x4f_A 103 KK 104 (112)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 259
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=5e-14 Score=124.07 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=67.8
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.+ |++|++.|+|..+.|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999985 3678999999999999 99999999999999999999999765
Q ss_pred CC
Q 003329 239 DN 240 (829)
Q Consensus 239 ~~ 240 (829)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 260
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=125.32 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+||. ++|..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456899999999999999999999999999999863 5679999999999999999999 8999999999999987
Q ss_pred CC
Q 003329 321 RP 322 (829)
Q Consensus 321 ~~ 322 (829)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=129.36 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4557899999999999999999999999999999985 46789999999999999999999999999999999998
Q ss_pred cc
Q 003329 234 FS 235 (829)
Q Consensus 234 ~a 235 (829)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 262
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.44 E-value=2e-14 Score=140.93 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|||.++|+++|+++|++||+|..+..+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 44567899999999999999999999999999988557789999999999999999999999999999999999999875
No 263
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=8.9e-14 Score=123.56 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=67.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||.|..+++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3579999999999999999999999999876543 45678999999999999999999999999999999999986
Q ss_pred C
Q 003329 322 P 322 (829)
Q Consensus 322 ~ 322 (829)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 264
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=124.10 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=72.4
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCC-eEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCcEEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKL 317 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~-I~~vrit------~~srG~aFVeF~~~e~A~kAl~~Ln--G~~i~Gr~I~V 317 (829)
..++|||+|||.++|+++|+++|++||. |.+|++. +.++|||||+|.+.++|++|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 9999874 3679999999999999999999996 58999999999
Q ss_pred EecCCCcc
Q 003329 318 EPSRPGGA 325 (829)
Q Consensus 318 ~~a~~~~~ 325 (829)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988764
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.3e-14 Score=130.28 Aligned_cols=78 Identities=18% Similarity=0.391 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec-----CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t-----~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
+...++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|+ .|++..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3456899999999999999999999999999999863 678999999999999999999 8999999999999999
Q ss_pred cCCC
Q 003329 235 SIPK 238 (829)
Q Consensus 235 a~pk 238 (829)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 266
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=9.7e-14 Score=118.07 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |+|..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 45668999999999999999998 9999999999999875
No 267
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=9.7e-14 Score=118.06 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.7
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 165 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 165 tLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
+|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999984 56789999999999999999998 9999999999999875
No 268
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=134.89 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.7
Q ss_pred CcccceecccCCCCCHHHHHHHhcccC--CeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG--~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...+|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|||..|.|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 9999976 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003329 320 SRPGG 324 (829)
Q Consensus 320 a~~~~ 324 (829)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 269
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=9.3e-14 Score=122.39 Aligned_cols=75 Identities=16% Similarity=0.374 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...++|||+|||+++++++|+++|++| +|..|++. +++|||||+|.+.++|++|++.|++..+.|++|+|.|+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 457899999999999999999999999 99999874 8999999999999999999999999999999999999854
No 270
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.43 E-value=1.6e-13 Score=126.06 Aligned_cols=81 Identities=16% Similarity=0.401 Sum_probs=70.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456799999999999999999999999999999985 4678999999999999999999976 589999999999
Q ss_pred ccCCCCC
Q 003329 234 FSIPKDN 240 (829)
Q Consensus 234 ~a~pk~~ 240 (829)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987643
No 271
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=123.18 Aligned_cols=80 Identities=11% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEE-EEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~s-v~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 664 678899999999999999999996 9999999999999
Q ss_pred ccCCCC
Q 003329 234 FSIPKD 239 (829)
Q Consensus 234 ~a~pk~ 239 (829)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886544
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=127.22 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=71.6
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++||+. ++..|.|++|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45799999999999999999999999999999763 45689999999999999999997 9999999999999998
Q ss_pred CCcc
Q 003329 322 PGGA 325 (829)
Q Consensus 322 ~~~~ 325 (829)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8764
No 273
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.1e-13 Score=123.55 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCee--------CCc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI--------AGK 313 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i--------~Gr 313 (829)
....+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45689999999999999999999999999999976 355689999999999999999999999999 578
Q ss_pred EEEEEecCCCc
Q 003329 314 RIKLEPSRPGG 324 (829)
Q Consensus 314 ~I~V~~a~~~~ 324 (829)
+|.|+|++++.
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 89999998653
No 274
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=136.97 Aligned_cols=103 Identities=23% Similarity=0.443 Sum_probs=90.8
Q ss_pred cccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc--
Q 003329 248 QGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG-- 324 (829)
Q Consensus 248 ~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~-- 324 (829)
.++|||+|||. ++++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.++++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 57899999999 999999999999999999999977779999999999999999999999999999999999987542
Q ss_pred -------------------------------------ccchhccccchhhcHHHHHHHHhhcC
Q 003329 325 -------------------------------------ARRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 325 -------------------------------------~rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
.+..++.++...+++++++..|.++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 12234677777888888888888876
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=119.42 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE--ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~--~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...++|||+|||+++++++|+++|++||+|..|+ ...+..|.|||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4578999999999999999999999999999994 34456677999999999999999999999999999999999876
Q ss_pred C
Q 003329 239 D 239 (829)
Q Consensus 239 ~ 239 (829)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 276
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=2.3e-13 Score=134.46 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=71.0
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCc
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 324 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G--r~I~V~~a~~~~ 324 (829)
-.+|||+||++.+|+++|+++|++||+|++|++. ..++|||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999999999874 3457899999999999999999999999965 999999999875
Q ss_pred c
Q 003329 325 A 325 (829)
Q Consensus 325 ~ 325 (829)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 277
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=9.5e-14 Score=131.60 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.9
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEE--EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCc
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGK 313 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~--vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~----~i~Gr 313 (829)
....++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 765 567899999999999 999999999999 99999
Q ss_pred EEEEEecCCCc
Q 003329 314 RIKLEPSRPGG 324 (829)
Q Consensus 314 ~I~V~~a~~~~ 324 (829)
+|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 278
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=2.2e-13 Score=129.72 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=70.9
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceE-EEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 240 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~-AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~~ 240 (829)
..|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.+ +.|+|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 457799999999999999999999999999976677898 9999999999999999999999988 8999999987643
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.5e-13 Score=118.77 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEE-eC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-it-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...+|||+|||.++|+++|+++|++||.|.+|+ +. ....+.|||+|.+.++|++|++.|||..+.|++|+|+++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457999999999999999999999999999995 43 3345669999999999999999999999999999999998874
No 280
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.4e-14 Score=121.70 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=69.1
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4578999999999999999999999999999976 35568999999999999999999999999999999887765
Q ss_pred C
Q 003329 322 P 322 (829)
Q Consensus 322 ~ 322 (829)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 281
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=119.92 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=63.8
Q ss_pred ccceecccCCCC------CHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc-EEEE
Q 003329 249 GTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKL 317 (829)
Q Consensus 249 ~tLfV~NLp~~v------TeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr-~I~V 317 (829)
++|||+|||..+ |+++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 679999999999999999864 46789999999999999999999999999999 8876
No 282
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=2.1e-13 Score=120.04 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=70.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...+|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 35789999999999999999999999 99999885 789999999999999999999999999999999999987654
No 283
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=5.7e-13 Score=126.46 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.5
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
.....+|||+|||.++|+++|+++|++||.|.++++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999987 345799999999999999999999999999999999998
Q ss_pred c
Q 003329 320 S 320 (829)
Q Consensus 320 a 320 (829)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 284
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=3.7e-13 Score=132.53 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
+....+.++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999985 456899999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 003329 232 IHFSIPKDN 240 (829)
Q Consensus 232 V~~a~pk~~ 240 (829)
|.|+.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999977654
No 285
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=124.68 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..+.++|||+|||.++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 44678999999999999999999999999775511 357889999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 286
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=9.6e-14 Score=118.41 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999998874 46789999999999999999999998 9999999999986
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=3.5e-13 Score=125.88 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999884 5678999999999999999999 799999999999999997
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 288
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=125.99 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=70.3
Q ss_pred CCCCCcEEEE--eCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcc-----cccccc
Q 003329 159 GEHPSRTLFV--RNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 231 (829)
Q Consensus 159 ~e~~srtLfV--~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l-----~gr~L~ 231 (829)
...++++||| +||++++++++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|||+.+ .+++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4457899999 6699999999999999999999999763 4689999999999999999999999988 689999
Q ss_pred ccccCC
Q 003329 232 IHFSIP 237 (829)
Q Consensus 232 V~~a~p 237 (829)
|.|+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 999863
No 289
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=4.1e-13 Score=126.99 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=68.5
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--cEEEEEecCCCcc
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGGA 325 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~-aFVeF~~~e~A~kAl~~LnG~~i~G--r~I~V~~a~~~~~ 325 (829)
.|||+||++.+|+++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|++|+++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 4689999999999999999999999999988544 586 9999999999999999999999988 6999999998763
No 290
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=5e-13 Score=132.00 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec-CCcceEEEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 238 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t-~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk 238 (829)
...+|||+||++.+|+++|+++|++||+|.+|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|+|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34578999999999999999999999999999864 4568999999999999999999999999965 99999999886
Q ss_pred CC
Q 003329 239 DN 240 (829)
Q Consensus 239 ~~ 240 (829)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 291
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=7.6e-14 Score=122.93 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.2
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |++|+..|||..+.|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999873 567999999999999 99999999999999999999999876
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 292
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.9e-13 Score=119.09 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=71.1
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++||+ ++..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345689999999999999999999999999999976 35678999999999999999999 47899999999999
Q ss_pred cCCCcc
Q 003329 320 SRPGGA 325 (829)
Q Consensus 320 a~~~~~ 325 (829)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988754
No 293
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=118.11 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||.++|+++|+++|++| .|.+|++ ++.++|||||+|.+.++|++|++ |+|..|.|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356799999999999999999999999 8999876 45678999999999999999999 99999999999999998
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 294
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=116.44 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
...++|||+|||.++|+++|+++|++||+|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985322222299999999999999999 999999999999999876544
No 295
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=5.8e-13 Score=129.72 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=91.3
Q ss_pred CcccceecccCCCCCHHHHHHHhccc----C-------CeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~f----G-------~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
..++|||+|||.++|+++|+++|++| | .|.++++. .++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 35789999999999999999999999 7 78888764 56899999999999999999 899999999999
Q ss_pred EEEecCCCcc----cchhccccchhhcHHHHHHHHhhcC
Q 003329 316 KLEPSRPGGA----RRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 316 ~V~~a~~~~~----rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
+|.++..... +..++.+++..+++++++.+|.++|
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 119 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFG 119 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTS
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcC
Confidence 9999876543 4568899999999999999999887
No 296
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.1e-13 Score=118.52 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCcE-EEEeCCCCCCcHHH----HHHHhhcc-CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 162 PSRT-LFVRNINSNVEDSE----LRALFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 162 ~srt-LfV~NLP~~vTeee----Lr~lFs~f-G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
|+.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4555 99999999999988 55899999 599998 33 99999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003329 236 IPKDNP 241 (829)
Q Consensus 236 ~pk~~~ 241 (829)
..+.+.
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 876543
No 297
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=4.7e-13 Score=128.35 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEE--------E--ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL--------Y--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 229 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv--------~--~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 229 (829)
..++++|||+|||+++|+++|+++|++||.|..+ + .+++++|||||+|.+.++|++|++.|+|..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567999999999999999999999999988653 2 46889999999999999999999999999999999
Q ss_pred ccccccCCCC
Q 003329 230 LDIHFSIPKD 239 (829)
Q Consensus 230 L~V~~a~pk~ 239 (829)
|.|.|+.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 298
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3e-13 Score=124.97 Aligned_cols=81 Identities=19% Similarity=0.436 Sum_probs=73.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 344689999999999999999999999999999884 367899999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 003329 235 SIPKDNP 241 (829)
Q Consensus 235 a~pk~~~ 241 (829)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887543
No 299
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=4.8e-13 Score=118.64 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=63.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcc--ccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l--~gr~L~V~~a~ 236 (829)
...+.++|||+|||+++|+++|+++|++||+|.+|++...++|||||+|.+.++|++ +++..+ .|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999877799999999999999983 556554 58999999998
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 300
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.5e-13 Score=123.77 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=70.6
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEE----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v----rit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
...+|||+|||.++|+++|+++|++||.|..+ +.++.++|||||+|.+.++|++||+ |||..|.|++|+|+++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 46799999999999999999999999987662 2246789999999999999999998 999999999999999988
Q ss_pred Cccc
Q 003329 323 GGAR 326 (829)
Q Consensus 323 ~~~r 326 (829)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 301
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9e-13 Score=119.90 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=70.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~-vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||+++|+++|+++|++||.|.+ |++ +++++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35679999999999999999999999999987 765 567799999999999999999997 999999999999998
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 302
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1.9e-13 Score=116.48 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=65.9
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
++|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999876 35568999999999999999999999 9999999999986
No 303
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=6.9e-13 Score=123.04 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=66.1
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE-----EEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-----IKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~-----I~V~~a~ 321 (829)
...+|||+|||.++|+++|+++|++||+|.+|++... |||||+|.+.++|++||+.|||.+|.|++ |+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3578999999999999999999999999999998644 99999999999999999999999999998 6766665
Q ss_pred CC
Q 003329 322 PG 323 (829)
Q Consensus 322 ~~ 323 (829)
+.
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 304
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.2e-13 Score=121.49 Aligned_cols=79 Identities=9% Similarity=0.206 Sum_probs=70.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++|++ +++..|.++.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999965 7763 56789999999999999999995 899999999999998
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87544
No 305
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1e-12 Score=116.52 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=63.8
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCcEEEEEecCCC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPG 323 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~--i~Gr~I~V~~a~~~ 323 (829)
....+|||+|||+++|+++|+++|++||.|.+|++..+++|||||+|.+.++|++ |++.. +.|++|.|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3567999999999999999999999999999999987789999999999999983 45654 56999999999887
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.6e-12 Score=122.87 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCcE--EEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceE-EEEEEcCHHHHHHHHHHhcCCcccc--cccccccc
Q 003329 161 HPSRT--LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFS 235 (829)
Q Consensus 161 ~~srt--LfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~-AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a 235 (829)
.++++ |||+||++.+|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34554 679999999999999999999999999987544 496 9999999999999999999999987 68999999
Q ss_pred CCCCC
Q 003329 236 IPKDN 240 (829)
Q Consensus 236 ~pk~~ 240 (829)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87653
No 307
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=2.4e-13 Score=122.60 Aligned_cols=80 Identities=23% Similarity=0.503 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4456789999999999999999999999999999985 46689999999999999999999 89999999999999
Q ss_pred cCCCCC
Q 003329 235 SIPKDN 240 (829)
Q Consensus 235 a~pk~~ 240 (829)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 308
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=117.87 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=65.4
Q ss_pred ccceecccCCCCCHHH----HHHHhccc-CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeed----L~~iFs~f-G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..|||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+|..+.||+|+|.||+.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599999 33 99999999999999999999999999999999999887
Q ss_pred cc
Q 003329 324 GA 325 (829)
Q Consensus 324 ~~ 325 (829)
..
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 309
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.2e-13 Score=123.10 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=69.2
Q ss_pred Cccccee--cccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCee-----CCcEEEEEe
Q 003329 247 NQGTLVV--FNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI-----AGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV--~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i-----~Gr~I~V~~ 319 (829)
...+||| +||+.++|+++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||+++ .|++|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4578999 66999999999999999999999998853 589999999999999999999999998 689999999
Q ss_pred cCCC
Q 003329 320 SRPG 323 (829)
Q Consensus 320 a~~~ 323 (829)
++.-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 310
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-13 Score=125.75 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCE-EEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I-~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...+.++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66664 467899999999999999999996 9999999999999
Q ss_pred ccCCC
Q 003329 234 FSIPK 238 (829)
Q Consensus 234 ~a~pk 238 (829)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=116.47 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=67.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
...+|||+|||.++|+++|+++|++||.|.+|........||||+|.+.++|++|+. |+|..|.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 356899999999999999999999999999984432222299999999999999999 99999999999999887654
No 312
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=125.80 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=71.7
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEE--------E--EeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~--------v--rit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
...+|||+|||+++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4678999999999999999999999998865 3 24678899999999999999999999999999999999
Q ss_pred EEecCCCccc
Q 003329 317 LEPSRPGGAR 326 (829)
Q Consensus 317 V~~a~~~~~r 326 (829)
|+++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=5.4e-14 Score=130.13 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEE--------EEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 226 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~s--------v~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~ 226 (829)
..+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456899999999999999999999999999988 553 4678999999999999999999999999999
Q ss_pred cccccccccCCCCCC
Q 003329 227 RRKLDIHFSIPKDNP 241 (829)
Q Consensus 227 gr~L~V~~a~pk~~~ 241 (829)
|++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 314
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.2e-13 Score=127.71 Aligned_cols=77 Identities=9% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
....++|||+|||+++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44568999999999999999999999999985422 357889999999999999999999 999999999999999
Q ss_pred cCC
Q 003329 235 SIP 237 (829)
Q Consensus 235 a~p 237 (829)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 315
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=1.3e-12 Score=130.07 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=89.2
Q ss_pred cccceecccCCCCCHHHHHHHhccc----C-------CeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~f----G-------~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
.++|||+|||.++|+++|+++|++| | .|.++++ +.++|||||+|.+.++|++|+ .|+|..+.|++|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 5789999999999999999999999 5 6777776 467899999999999999999 8999999999999
Q ss_pred EEecCCC------------------------cccchhccccchhhcHHHHHHHHhhcC
Q 003329 317 LEPSRPG------------------------GARRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 317 V~~a~~~------------------------~~rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
|.++.+. ..+..++.++...++.+++..+|.++|
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 139 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG 139 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 9998654 224457888888999999999999887
No 316
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=1.1e-12 Score=121.55 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=63.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++||+.|++..|.|++|+|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 45689999999999999999999999999999987443 9999999999999999999999999999944443
No 317
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.6e-13 Score=124.55 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCe-EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I-~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
....+|||+|||+++|+++|+++|+.||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356899999999999999999999999999 67765 356799999999999999999987 999999999999999
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.35 E-value=6.9e-13 Score=137.95 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccC--CEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG--~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 9999984 678999999999999999999999999999999999999
Q ss_pred cCC
Q 003329 235 SIP 237 (829)
Q Consensus 235 a~p 237 (829)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 319
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-13 Score=117.96 Aligned_cols=78 Identities=24% Similarity=0.456 Sum_probs=67.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
.++++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|... ...+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35799999999999999999999999999999998777899999999999999865331 3345889999999987654
No 320
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=3.3e-13 Score=130.06 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=68.9
Q ss_pred ceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEE
Q 003329 200 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR 279 (829)
Q Consensus 200 kG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr 279 (829)
+|+|+.+|..++.+..++..+... ..+....-..... ..........+|||+|||+++|+++|+++|++|| |.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888888888777754432 2332221111111 0111223457999999999999999999999999 66887
Q ss_pred eC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 280 ET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 280 it----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|..+.+..
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 63 567999999999999999999 799999999999999987765
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=3.8e-13 Score=114.26 Aligned_cols=70 Identities=19% Similarity=0.469 Sum_probs=64.9
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 165 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 165 tLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
+|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999874 36789999999999999999999 5899999999999875
No 322
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.1e-12 Score=114.34 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcc----C-------CEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 229 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~f----G-------~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 229 (829)
.+.++|||+|||+++++++|+++|++| | +|.++++ .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457999999999999999999999999 8 9999986 456999999999999999999 89999999999
Q ss_pred ccccc
Q 003329 230 LDIHF 234 (829)
Q Consensus 230 L~V~~ 234 (829)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99873
No 323
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=6.4e-13 Score=127.60 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=68.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCC---eEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~---I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...+|||+|||+++|+++|+++|++||. |.+|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4678999999999999999999999999 777765 35679999999999999999999 999999999999999
Q ss_pred cCCC
Q 003329 320 SRPG 323 (829)
Q Consensus 320 a~~~ 323 (829)
+.++
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8654
No 324
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=4.2e-13 Score=125.18 Aligned_cols=76 Identities=7% Similarity=0.115 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCC---EEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~---I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
...++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999998 777663 46789999999999999999999 99999999999999
Q ss_pred ccCC
Q 003329 234 FSIP 237 (829)
Q Consensus 234 ~a~p 237 (829)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 325
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=6e-13 Score=121.68 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=69.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCC---EEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~---I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999988 777774 36789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003329 233 HFSIP 237 (829)
Q Consensus 233 ~~a~p 237 (829)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98864
No 326
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1e-12 Score=119.62 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
....+|||+|||+++|+++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345799999999999999999999999954 7765 46679999999999999999995 89999999999999987
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 327
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=4.4e-13 Score=113.82 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=64.6
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++. ++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999763 56789999999999999999984 899999999999875
No 328
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.6e-12 Score=130.06 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+.++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999985 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 003329 235 SIPK 238 (829)
Q Consensus 235 a~pk 238 (829)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 329
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=1.1e-12 Score=122.27 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=69.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCC---eEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~---I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
....+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ |++..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34678999999999999999999999998 777765 35678999999999999999999 99999999999999
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
++.++
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=1.8e-12 Score=121.77 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|.|.|+.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3456899999996 7999999999999999999986 478999999999999999999999999999999999999876
Q ss_pred C
Q 003329 239 D 239 (829)
Q Consensus 239 ~ 239 (829)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 331
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=8.2e-13 Score=137.39 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=71.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccC--CeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG--~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...+|||+||++++|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.||++.|.|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999976 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003329 320 SRPGG 324 (829)
Q Consensus 320 a~~~~ 324 (829)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97654
No 332
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=5.6e-13 Score=127.99 Aligned_cols=77 Identities=6% Similarity=0.088 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCC---EEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~---I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 666663 46789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003329 233 HFSIP 237 (829)
Q Consensus 233 ~~a~p 237 (829)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98753
No 333
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=128.08 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~--------vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
....+|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34679999999999999999999999999988 654 35568999999999999999999999999999
Q ss_pred cEEEEEecCCCcc
Q 003329 313 KRIKLEPSRPGGA 325 (829)
Q Consensus 313 r~I~V~~a~~~~~ 325 (829)
++|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987653
No 334
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.1e-13 Score=125.93 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=68.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEE-E----eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v-r----it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||+|||+++|+++|+++|+.||.|..+ . .+++++|||||+|.+.++|++||+ |||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 2 256779999999999999999999 99999999999999987
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 335
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.7e-13 Score=115.58 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=66.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
..++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|+.. ...+.|++|+|.++.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 4578999999999999999999999999999999777899999999999999765331 3356899999999988764
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=118.46 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=67.1
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
...+|||+|||+++|+++|+++|+.| .|.+|++. ++++|||||+|.+.++|++|| .||+..|.|+.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 89898763 567999999999999999999 6999999999999988754
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=3.5e-12 Score=111.23 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=66.0
Q ss_pred CcccceecccCCCCCHHHHHHHhccc----C-------CeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~f----G-------~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
..++|||+|||.++|+++|+++|++| | .|.++++. ..+|||||+|.+.++|++|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45799999999999999999999999 8 99999985 45899999999999999999 999999999999
Q ss_pred EEEe
Q 003329 316 KLEP 319 (829)
Q Consensus 316 ~V~~ 319 (829)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=2.8e-12 Score=120.42 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=70.8
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
....+|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|+|..+.|++|+|++++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34679999996 69999999999999999999884 6799999999999999999999999999999999999988753
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=4.5e-12 Score=128.39 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHh--cCCccccccccccccCCCCCCCC-----CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC
Q 003329 209 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSD-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 281 (829)
Q Consensus 209 d~e~A~~Ai~~L--ng~~l~gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit 281 (829)
+.+.+..|++.. ....+.+....|........+.. .....++|||+|||.++|+++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888766 34445555555544422111111 12345799999999999999999999999999999863
Q ss_pred ----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 282 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 282 ----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
+..+|||||+|.+.++|++|+..+ +..+.|++|.|.++..-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 567999999999999999999865 56999999999987654
No 340
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=119.87 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCC---eEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~---I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
....+|||+|||+++|+++|+++|+.||. |..|++. ++++|||||+|.+.++|++||+ |++..+.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999988 8888763 5678999999999999999999 99999999999999
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98754
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.29 E-value=1.5e-12 Score=117.35 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=70.2
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ ++..+.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35679999999999999999999999999999976 45578999999999999999999 9999999999999987
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 342
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=3.9e-12 Score=120.63 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEE--EEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~--sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 676 7774 46789999999999999999999 5789999999999
Q ss_pred cccCC
Q 003329 233 HFSIP 237 (829)
Q Consensus 233 ~~a~p 237 (829)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=3.9e-12 Score=133.10 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCC---------cHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcc-----
Q 003329 160 EHPSRTLFVRNINSNV---------EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 225 (829)
Q Consensus 160 e~~srtLfV~NLP~~v---------TeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l----- 225 (829)
....++|||+||+..+ ++++|+++|++||+|.+|++. .++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 799999999999999999864 5799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCCC
Q 003329 226 -------RRRKLDIHFSIPKDNPS 242 (829)
Q Consensus 226 -------~gr~L~V~~a~pk~~~~ 242 (829)
.|+.|.|.||.+..++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTGGGGGGSCCCEEEECC------
T ss_pred ccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998765543
No 344
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=1.3e-12 Score=126.02 Aligned_cols=79 Identities=9% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .+++..|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 557874 4678999999999999999999 6999999999999998
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=5e-12 Score=132.32 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=78.1
Q ss_pred CCccccccccccccCCCCCCCCCCCCcccceecccCCCC---------CHHHHHHHhcccCCeEEEEeCCCcccEEEEEE
Q 003329 222 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV---------SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEF 292 (829)
Q Consensus 222 g~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v---------TeedL~~iFs~fG~I~~vrit~~srG~aFVeF 292 (829)
...+.|+.....+..............++|||+||+..+ ++++|+++|++||.|.+|++. .++|||||+|
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F 186 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKF 186 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEe
Confidence 344456655555443322222234456899999999998 799999999999999999986 4689999999
Q ss_pred cCHHHHHHHHHHhCCCee------------CCcEEEEEecCCCcc
Q 003329 293 YDVRAAEAALKSLNRSDI------------AGKRIKLEPSRPGGA 325 (829)
Q Consensus 293 ~~~e~A~kAl~~LnG~~i------------~Gr~I~V~~a~~~~~ 325 (829)
.+.++|++|+++|+|..| .|+.|.|+||+....
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999999999 899999999987653
No 346
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=4.6e-12 Score=126.70 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=72.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
...+|||+|||..+++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|+|..|.|++|+|+++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45799999999999999999999999999999874 55789999999999999999999999999999999999976
Q ss_pred Cc
Q 003329 323 GG 324 (829)
Q Consensus 323 ~~ 324 (829)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 347
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=119.40 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
..++|||+|||+++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8888885 4678999999999999999999 5999999999999987743
No 348
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=122.09 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCE----EEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I----~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
...++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 34542 578999999999999999999995 999999999999
Q ss_pred cccC
Q 003329 233 HFSI 236 (829)
Q Consensus 233 ~~a~ 236 (829)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 349
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=113.30 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEeCCCCCCc-----------HHHHHHHhhccCCEEEEEe-cCCcceEEEEEEcCHHHHHHHHHHhcCCcc
Q 003329 158 YGEHPSRTLFVRNINSNVE-----------DSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPL 225 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vT-----------eeeLr~lFs~fG~I~sv~~-t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l 225 (829)
....++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|+|..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3566799999999954332 6899999999999999975 345799999999999999999999999999
Q ss_pred ccccccccccCCCCC
Q 003329 226 RRRKLDIHFSIPKDN 240 (829)
Q Consensus 226 ~gr~L~V~~a~pk~~ 240 (829)
.|++|.|.|+.++..
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987654
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8.2e-12 Score=115.38 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----c---CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t---~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
....++|||+|||+++|+++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 34579999999999999999999999999999 653 2 57899999999999999999999843 5566655
Q ss_pred cccc
Q 003329 232 IHFS 235 (829)
Q Consensus 232 V~~a 235 (829)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5543
No 351
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.24 E-value=9.5e-12 Score=141.12 Aligned_cols=80 Identities=28% Similarity=0.469 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+.++|||+|||+.||+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||..|+|..|.|++|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97643
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=1.5e-11 Score=112.70 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCC-----CCcHHHHHHHhhccCCEEEEEec------CCcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 160 EHPSRTLFVRNINS-----NVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 160 e~~srtLfV~NLP~-----~vTeeeLr~lFs~fG~I~sv~~t------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
..++++|+|+||.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 34789999999999999999852 46799999999999999999999999999999
Q ss_pred cccccccCC
Q 003329 229 KLDIHFSIP 237 (829)
Q Consensus 229 ~L~V~~a~p 237 (829)
+|.|.|+.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=113.30 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=66.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit--------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
..++|||+|||.++|+++|+++|++||.|. +++. ++++|||||+|.+.++|++||+.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6542 4679999999999999999999984 5889988888
Q ss_pred ecCCCcccc
Q 003329 319 PSRPGGARR 327 (829)
Q Consensus 319 ~a~~~~~rr 327 (829)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 766554433
No 354
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4.5e-12 Score=119.65 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=66.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCe----EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I----~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. +++.|.|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35789999999999999999999999975 45654 567799999999999999999996 9999999999998
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=3.2e-11 Score=110.55 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CcccceecccCC-----CCCHHHHHHHhcccCCeEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 247 NQGTLVVFNLDP-----SVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 247 ~~~tLfV~NLp~-----~vTeedL~~iFs~fG~I~~vrit------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
..++|+|.|+.. +-++++|+++|++||.|.+|++. ++++|||||+|.+.++|.+|++.|||+.+.||+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999962 23789999999999999999763 3568999999999999999999999999999999
Q ss_pred EEEecCC
Q 003329 316 KLEPSRP 322 (829)
Q Consensus 316 ~V~~a~~ 322 (829)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 356
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.21 E-value=7.6e-12 Score=118.60 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=66.3
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeE--EEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--EIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~--~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...+|||+|||+++|+++|+++|++| .|. +|++. ++++|||||+|.+.++|++||+. ++..|.|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 46789999999999999999999999 566 78753 56799999999999999999984 789999999999988
Q ss_pred CCC
Q 003329 321 RPG 323 (829)
Q Consensus 321 ~~~ 323 (829)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.3e-11 Score=110.31 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=69.3
Q ss_pred CCCcccceecccCCCCC-----------HHHHHHHhcccCCeEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 245 DLNQGTLVVFNLDPSVS-----------NEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vT-----------eedL~~iFs~fG~I~~vrit-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
....++|+|.||....+ +++|+++|++||.|.+|.+. ..++|||||+|.+.++|++|++.|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34568999999944332 58999999999999999763 4579999999999999999999999999999
Q ss_pred cEEEEEecCCCc
Q 003329 313 KRIKLEPSRPGG 324 (829)
Q Consensus 313 r~I~V~~a~~~~ 324 (829)
++|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998765
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.5e-11 Score=116.38 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.3
Q ss_pred ccceeccc----CCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcC----HHH----HHHHHH--HhCCCe
Q 003329 249 GTLVVFNL----DPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALK--SLNRSD 309 (829)
Q Consensus 249 ~tLfV~NL----p~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~----~e~----A~kAl~--~LnG~~ 309 (829)
.+|||+|| |+.+++++|+++|+.||+|.+|++ ++.++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999964 77889999999996 333 899998 899999
Q ss_pred eCCcEEEEEecCCCcc
Q 003329 310 IAGKRIKLEPSRPGGA 325 (829)
Q Consensus 310 i~Gr~I~V~~a~~~~~ 325 (829)
|.|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999887765
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.7e-11 Score=115.92 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=64.9
Q ss_pred cEEEEeCC----CCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcC----HHH----HHHHHH--HhcCCc
Q 003329 164 RTLFVRNI----NSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 224 (829)
Q Consensus 164 rtLfV~NL----P~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d----~e~----A~~Ai~--~Lng~~ 224 (829)
+.|||+|| |+.+++++|+++|++||+|.+|.+ +++++|||||+|.| +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999999983 78999999999996 433 889988 789999
Q ss_pred cccccccccccC
Q 003329 225 LRRRKLDIHFSI 236 (829)
Q Consensus 225 l~gr~L~V~~a~ 236 (829)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.14 E-value=6.1e-11 Score=120.08 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
..++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999985 3678999999999999999999855 5689999999998754
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.3e-10 Score=103.09 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=64.4
Q ss_pred CcEEEEeCCC-------CCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 163 SRTLFVRNIN-------SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 163 srtLfV~NLP-------~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..+|.|+-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566666544 46899999999999999999998789999999999999999999997544 67999999999
Q ss_pred CCCC
Q 003329 236 IPKD 239 (829)
Q Consensus 236 ~pk~ 239 (829)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.11 E-value=1.2e-10 Score=106.81 Aligned_cols=78 Identities=17% Similarity=0.367 Sum_probs=67.7
Q ss_pred CCCCcEEEEeCC--CCCCc--------HHHHHHHhhccCCEEEEEec-------CCcceEEEEEEcCHHHHHHHHHHhcC
Q 003329 160 EHPSRTLFVRNI--NSNVE--------DSELRALFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQN 222 (829)
Q Consensus 160 e~~srtLfV~NL--P~~vT--------eeeLr~lFs~fG~I~sv~~t-------~kskG~AFV~F~d~e~A~~Ai~~Lng 222 (829)
..|++.|.++|+ |.++. +++|+++|++||+|.+|++. .+++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357899999998 44443 47999999999999999852 25789999999999999999999999
Q ss_pred CccccccccccccCC
Q 003329 223 KPLRRRKLDIHFSIP 237 (829)
Q Consensus 223 ~~l~gr~L~V~~a~p 237 (829)
+.+.||+|.|.|+.+
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=105.24 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 257 DPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 257 p~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
+..+|+++|+++|++||.|.+|++.++++|||||+|.+.++|++|++.++ .+.|++|+|+|++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 46789999999999999999999988899999999999999999999854 46899999999987753
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.8e-10 Score=104.27 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=65.3
Q ss_pred Ccccceeccc--CCCCC--------HHHHHHHhcccCCeEEEEeCC-------CcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 247 NQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 247 ~~~tLfV~NL--p~~vT--------eedL~~iFs~fG~I~~vrit~-------~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
+.+.|.|.|+ +.++. +++|++.|++||.|.+|++.. .++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888887 33343 378999999999999998742 458999999999999999999999999
Q ss_pred eCCcEEEEEecCCC
Q 003329 310 IAGKRIKLEPSRPG 323 (829)
Q Consensus 310 i~Gr~I~V~~a~~~ 323 (829)
+.||+|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998643
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=3.1e-10 Score=124.62 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=65.9
Q ss_pred CCCCCcEEEEeC--CCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccc---cc--ccc
Q 003329 159 GEHPSRTLFVRN--INSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLD 231 (829)
Q Consensus 159 ~e~~srtLfV~N--LP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~---gr--~L~ 231 (829)
...++++|||+| |+..+||++|+++|++||+|.+|++ ..+||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 456789999999 5789999999999999999999975 348999999999999999999999999873 33 566
Q ss_pred cccc
Q 003329 232 IHFS 235 (829)
Q Consensus 232 V~~a 235 (829)
|.|+
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6665
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=1.2e-10 Score=106.42 Aligned_cols=68 Identities=28% Similarity=0.401 Sum_probs=59.0
Q ss_pred ecccCCCCCHHHHHHHh------------cccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 253 VFNLDPSVSNEDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 253 V~NLp~~vTeedL~~iF------------s~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
+.||+..+++++|+++| ++||.|.+|++. ++++|||||+|.+.++|++|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777777666 999999999874 34599999999999999999999999999999999
Q ss_pred EEec
Q 003329 317 LEPS 320 (829)
Q Consensus 317 V~~a 320 (829)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.01 E-value=1.4e-10 Score=106.07 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=59.3
Q ss_pred EeCCCCCCcHHHHHHHh------------hccCCEEEEEec----CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 168 VRNINSNVEDSELRALF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 168 V~NLP~~vTeeeLr~lF------------s~fG~I~sv~~t----~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
+.+||..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.+.||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777888777666 999999999963 45799999999999999999999999999999999
Q ss_pred cccc
Q 003329 232 IHFS 235 (829)
Q Consensus 232 V~~a 235 (829)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.00 E-value=5.4e-10 Score=122.75 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=66.0
Q ss_pred CCcccceecc--cCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---Cc--EEEEE
Q 003329 246 LNQGTLVVFN--LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GK--RIKLE 318 (829)
Q Consensus 246 ~~~~tLfV~N--Lp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~---Gr--~I~V~ 318 (829)
....+|||+| |+..+|+++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|||+++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 3567999999 578999999999999999999998854 7899999999999999999999999883 44 67788
Q ss_pred ecC
Q 003329 319 PSR 321 (829)
Q Consensus 319 ~a~ 321 (829)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 875
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=1.2e-09 Score=102.27 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCCC--C---CcHHHHHHHhhccCCEEEEEec---------CCcceEEEEEEcCHHHHHHHHHHhcCCccc
Q 003329 161 HPSRTLFVRNINS--N---VEDSELRALFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLR 226 (829)
Q Consensus 161 ~~srtLfV~NLP~--~---vTeeeLr~lFs~fG~I~sv~~t---------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~ 226 (829)
.++++|+++|+-. + -.++||++.|++||+|.+|++. ++++|+|||+|.+.++|++|++.|||+.|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999842 2 2378999999999999999841 246799999999999999999999999999
Q ss_pred cccccccccC
Q 003329 227 RRKLDIHFSI 236 (829)
Q Consensus 227 gr~L~V~~a~ 236 (829)
||.|.|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999974
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.93 E-value=1.3e-09 Score=102.06 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=64.1
Q ss_pred CcccceecccC--CCC---CHHHHHHHhcccCCeEEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 247 NQGTLVVFNLD--PSV---SNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 247 ~~~tLfV~NLp--~~v---TeedL~~iFs~fG~I~~vrit---------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
..++|+|.|+- .++ .++||++.|++||.|.+|++. ++.+|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35688888883 222 368999999999999999752 2346999999999999999999999999999
Q ss_pred cEEEEEecCC
Q 003329 313 KRIKLEPSRP 322 (829)
Q Consensus 313 r~I~V~~a~~ 322 (829)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.92 E-value=2e-09 Score=100.14 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=63.7
Q ss_pred CcccceecccCC--CC--------CHHHHHHHhcccCCeEEEEeCCC-cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 247 NQGTLVVFNLDP--SV--------SNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 247 ~~~tLfV~NLp~--~v--------TeedL~~iFs~fG~I~~vrit~~-srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
..++|.+.|+=. +. .++||++.|++||.|.+|.+... .+|++||+|.+.++|.+|++.|||..++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456788888732 21 23689999999999999988543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 003329 316 KLEPSRP 322 (829)
Q Consensus 316 ~V~~a~~ 322 (829)
+|+++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999854
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.90 E-value=2.4e-09 Score=99.60 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCCCcEEEEeCCCCCC----------cHHHHHHHhhccCCEEEEEecC-CcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 160 EHPSRTLFVRNINSNV----------EDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 160 e~~srtLfV~NLP~~v----------TeeeLr~lFs~fG~I~sv~~t~-kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
..++++|.++|+=..- .++||++.|++||.|.+|.+.. ..+|+|||+|.+.++|++|++.|||+.|.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4578899999984321 2468899999999999998633 3589999999999999999999999999999
Q ss_pred cccccccC
Q 003329 229 KLDIHFSI 236 (829)
Q Consensus 229 ~L~V~~a~ 236 (829)
.|.|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999974
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-08 Score=88.92 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=63.4
Q ss_pred CCcccceecccC----CCCCH----HHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEE
Q 003329 246 LNQGTLVVFNLD----PSVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 246 ~~~~tLfV~NLp----~~vTe----edL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
...+||+|.-.+ .++-+ .+|.+.|++||+|..+|+... .+||+|.+.++|.+||+ |||.++.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 356789998876 23444 679999999999999998653 38999999999999998 9999999999999
Q ss_pred EecCCC
Q 003329 318 EPSRPG 323 (829)
Q Consensus 318 ~~a~~~ 323 (829)
+++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999875
No 374
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.65 E-value=5.4e-08 Score=86.86 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=71.7
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcccEEE-eecccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003329 666 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY-LPIDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 742 (829)
Q Consensus 666 TTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Y-lp~df~~~-~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~-s~k~ 742 (829)
|.|+||++|..+|++.+++.|.... ++||+| .|-+...+ +--+.|||||.+++++..|.+.|+|+.|...+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7899999999999999999999764 688885 57776654 44577999999999999999999999998753 4577
Q ss_pred EEEEeeecc
Q 003329 743 ASLAYARIQ 751 (829)
Q Consensus 743 ~~v~~A~iQ 751 (829)
+.|.||--|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999877
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.3e-07 Score=88.89 Aligned_cols=77 Identities=21% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCcccceecccCCC-CCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcC-HHHHHHHHHHhC--CCeeCCcEEEEEecC
Q 003329 246 LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALKSLN--RSDIAGKRIKLEPSR 321 (829)
Q Consensus 246 ~~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~-~e~A~kAl~~Ln--G~~i~Gr~I~V~~a~ 321 (829)
.....|+|+||+.+ ++.++|+++|++||+|..|.+.... ..|||+|.+ .++|.+|++.|+ +.+|.|..++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 34678999999999 9999999999999999999985433 379999999 899999999995 779999999998766
Q ss_pred CC
Q 003329 322 PG 323 (829)
Q Consensus 322 ~~ 323 (829)
-.
T Consensus 95 Ge 96 (121)
T 1owx_A 95 GE 96 (121)
T ss_dssp HH
T ss_pred CH
Confidence 43
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=3.9e-07 Score=85.59 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=62.3
Q ss_pred CCCCcEEEEeCCCCC-CcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcC-HHHHHHHHHHhc--CCccccccccccc
Q 003329 160 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~-vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d-~e~A~~Ai~~Ln--g~~l~gr~L~V~~ 234 (829)
-.+.+.|+|+||+.+ +++++|+++|++||+|..|.+. +..-.|||+|.+ .++|.+|+++|+ +..|.+..+.++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 356789999999999 9999999999999999999852 234479999999 899999999995 6677777666654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.7e-07 Score=83.81 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=62.2
Q ss_pred CCcccceecccCCC-----CCH----HHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 246 LNQGTLVVFNLDPS-----VSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 246 ~~~~tLfV~NLp~~-----vTe----edL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
.+.+||+|.-++.+ +-+ .+|.+.|+.||+|..+|+.... +||+|.+.++|.+||+ |+|.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45789999988643 333 5799999999999999986544 9999999999999998 999999999999
Q ss_pred EEecCC
Q 003329 317 LEPSRP 322 (829)
Q Consensus 317 V~~a~~ 322 (829)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 988654
No 378
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.45 E-value=6.6e-08 Score=86.91 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=69.9
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcccEE-Eeeccccccce-eEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003329 666 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL-YLPIDFKNKCN-VGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 742 (829)
Q Consensus 666 TTvMirNIPnk~t~~~L~~~id~~~~~~yDf~-Ylp~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~~-s~k~ 742 (829)
-.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|..-+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 57999999999999999999997554 4766 57777665433 367999999999999999999999998753 4578
Q ss_pred EEEEeeecc
Q 003329 743 ASLAYARIQ 751 (829)
Q Consensus 743 ~~v~~A~iQ 751 (829)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999877
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=3.1e-07 Score=81.69 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=62.2
Q ss_pred CCCcEEEEeCCCC----CCcH----HHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 161 HPSRTLFVRNINS----NVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 161 ~~srtLfV~NLP~----~vTe----eeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.|.-||+|...+. ..-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 4667899988772 3333 77999999999999998633 338999999999999999 9999999999999
Q ss_pred cccCCC
Q 003329 233 HFSIPK 238 (829)
Q Consensus 233 ~~a~pk 238 (829)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=7.6e-07 Score=91.09 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=57.3
Q ss_pred CCCHHHHHHHhcccCCeEEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 259 SVSNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 259 ~vTeedL~~iFs~fG~I~~vrit---------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
+-.+++|++.|++||.|.++.+. ++.+|++||+|.+.++|.+|++.|||..+.||.|.+.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34568999999999999999762 26789999999999999999999999999999999999753
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.19 E-value=2e-06 Score=88.00 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=62.6
Q ss_pred CCcEEEEeCCC-----CCCcHHHHHHHhhccCCEEEEEe---------cCCcceEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003329 162 PSRTLFVRNIN-----SNVEDSELRALFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 227 (829)
Q Consensus 162 ~srtLfV~NLP-----~~vTeeeLr~lFs~fG~I~sv~~---------t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g 227 (829)
..+.+.+.|+- .+-.+++|++.|++||+|.++.+ +++++|++||+|.+.++|++|++.|+|+.+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34555555542 23457899999999999999985 12789999999999999999999999999999
Q ss_pred ccccccccC
Q 003329 228 RKLDIHFSI 236 (829)
Q Consensus 228 r~L~V~~a~ 236 (829)
|+|.+.|+.
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999999974
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2e-06 Score=76.88 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=60.6
Q ss_pred CCCCcEEEEeCCCCC-----CcH----HHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003329 160 EHPSRTLFVRNINSN-----VED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 230 (829)
Q Consensus 160 e~~srtLfV~NLP~~-----vTe----eeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L 230 (829)
..|.-||+|..++.+ +-+ .+|.+.|.+||+|..+++... -+||+|.+.++|.+|++ |+|..+.||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 456789999998743 222 569999999999999985322 29999999999999999 99999999999
Q ss_pred cccccC
Q 003329 231 DIHFSI 236 (829)
Q Consensus 231 ~V~~a~ 236 (829)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.5e-06 Score=76.30 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=66.0
Q ss_pred CcccceecccCCCCCHHHHHHHhccc-----CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~f-----G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
..++|-+-|||..+++..|+.+.++| |.|+.+.+.+...| |+|+|.|...|.+|.-+|+|.+|.|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35789999999999999999999999 99999988776655 99999999999999999999999999999853
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00037 Score=63.15 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcc-----CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~f-----G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...++|.|.|||++++++.|.-+|+.= |+|..+.... +-|+|+|.+.+.|++.++ -....|.+..|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 346899999999999999999999972 6899987544 789999999999999987 3356778888888765
Q ss_pred CCCCCCCCCCCCcccceecccCCCCC
Q 003329 236 IPKDNPSDKDLNQGTLVVFNLDPSVS 261 (829)
Q Consensus 236 ~pk~~~~~~~~~~~tLfV~NLp~~vT 261 (829)
.+. ...+|++.+|++.++
T Consensus 82 ~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCCSCCCCCC
T ss_pred CCC--------CcceEeeecCCCCCC
Confidence 443 356899999999876
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=8.9e-05 Score=67.80 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhcc-----CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~f-----G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
..++|-+-|||..++++.|+.+.++| |+|..+.+...+ +=|+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 999999865544 449999999999999999999999999999875
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00038 Score=63.10 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=72.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcc-c----CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGA-Y----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~-f----G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
-..+|.|.|||+.+.++.|.-+|+. - |+|..+...+ +-|+|+|.+.+.|++.|+. ..+.+.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 3568999999999999999999986 1 6899998765 6699999999999999973 3678999999999988
Q ss_pred CCcccchhccccc
Q 003329 322 PGGARRNLMLQLN 334 (829)
Q Consensus 322 ~~~~rr~~~~ql~ 334 (829)
+...+|.+++.+.
T Consensus 83 ~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 83 PRAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCCSCC
T ss_pred CCCcceEeeecCC
Confidence 8888888887764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.77 E-value=0.0013 Score=59.69 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCCC-c----HHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 163 SRTLFVRNINSNV-E----DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 163 srtLfV~NLP~~v-T----eeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
.++|+|.||+.++ + .+.++++|..|+++.+.... ++-.-..|.|.++++|.+|...|++..+.|++|+|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999876 3 25779999999998887532 3444579999999999999999999999999999999875
Q ss_pred C
Q 003329 238 K 238 (829)
Q Consensus 238 k 238 (829)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.0018 Score=58.81 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=62.2
Q ss_pred ccceecccCCCC-CH----HHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~v-Te----edL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.+|+|.||+.++ +. +.++++|..|+++......+.-| =..|.|.+.++|.+|-..|++..+.|++|+|-|+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 579999998766 32 56789999999888876543333 3689999999999999999999999999999999855
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.16 E-value=0.013 Score=52.09 Aligned_cols=65 Identities=5% Similarity=0.052 Sum_probs=54.1
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-ecC------CcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TAC------KHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-~t~------kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
++|.||+||+.+||+++.+.++.+.++...+ +.+ ..-.-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5899999999999999999999998876554 222 1234699999999999999999999988644
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.015 Score=54.04 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-cEEEEEecCC
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 322 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G-r~I~V~~a~~ 322 (829)
......|.|.+.|+.. ...+.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..|.| -.|-|.....
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 3446789999999885 5677888999999999987 3456799999999999999998 59999985 6677776543
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.58 E-value=0.093 Score=48.80 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccc-cccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g-r~L~V~~a 235 (829)
..+-|.|-+.|+.. ...|...|++||+|.+... .....+..|.|.+..+|++||. .||..|.+ -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36789999999874 6788899999999998875 3456799999999999999999 68988874 45555554
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.25 E-value=0.065 Score=48.08 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 221 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Ln 221 (829)
.+.++| ..|+.+.-.||.++|+.||-|.--.+ .---|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 345666 99999999999999999985432222 34569999999999999999774
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.72 E-value=0.068 Score=48.08 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=43.6
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 221 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Ln 221 (829)
..++| +.|+.+.-.||.++|+.||-|. +.-..---|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999443 222235679999999999999999875
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.23 E-value=0.081 Score=47.48 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=42.4
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
..++| +.|+++...||.++|+.||.|. |+-. ....|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999998432 2211 13469999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.02 E-value=0.088 Score=47.25 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=52.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-ecC----C--cceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TAC----K--HRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-~t~----k--skG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
..+-+|.||.||+.+||+++.+.++.+=++...+ +.+ + .-.-|||.|.+.++.....+.++|..+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3467899999999999999998888765553322 111 1 223589999999999999999999887654
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.77 E-value=0.063 Score=48.30 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=42.6
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
.++| +.|+++...||.++|+.||.| .|+-. ....|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999833 33322 23469999999999999999875
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.73 E-value=0.048 Score=61.94 Aligned_cols=56 Identities=9% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHH
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 218 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~ 218 (829)
..|+|+|. .|..+++.+|.++|++||+|.++.......-||.|+|.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35899998 699999999999999999999997655445699999999999997765
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.98 E-value=0.1 Score=49.27 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=55.2
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEE-EEeC----------------C--CcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRET----------------P--HKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~-vrit----------------~--~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
..|.|.+.|++.+ ..+-+.|++||.|.+ +..+ + ...++-.|+|++..+|.+||. -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577888876655 456678999999977 2211 1 135678999999999999998 59999
Q ss_pred eCCcEEEEEecCC
Q 003329 310 IAGKRIKLEPSRP 322 (829)
Q Consensus 310 i~Gr~I~V~~a~~ 322 (829)
|.|.-|=|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888888753
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.53 E-value=0.07 Score=60.61 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=43.7
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 304 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~ 304 (829)
.+.|+|. .+..+++.+|.++|++||.|.++.....+..|+.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 7999999999999999999999987766778999999999999877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.36 E-value=0.34 Score=45.69 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=53.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-ecC------------------CcceEEEEEEcCHHHHHHHHHHhcCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TAC------------------KHRGFVMISYYDIRAARTAMRALQNK 223 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-~t~------------------kskG~AFV~F~d~e~A~~Ai~~Lng~ 223 (829)
...|.|-+.|++ ....+.+.|++||.|.+-. ... ....+..|+|.+..+|++|+. .||+
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456788888654 4556778999999987622 110 135678999999999999999 7999
Q ss_pred ccccccccccccC
Q 003329 224 PLRRRKLDIHFSI 236 (829)
Q Consensus 224 ~l~gr~L~V~~a~ 236 (829)
.|.|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9988877776653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.39 E-value=10 Score=43.53 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=45.4
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 221 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Ln 221 (829)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 3477777 8999999999999999997653333 45669999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=54.03 E-value=24 Score=40.35 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=43.5
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
..++|+ +|..+...+|.+.|+.||.|.-..+ ....|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 355555 8999999999999999996533333 34569999999999999999885
Done!