Query 003330
Match_columns 829
No_of_seqs 493 out of 4206
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-44 5.2E-49 412.9 20.5 307 184-515 129-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.4E-39 8.2E-44 371.7 20.0 285 183-507 128-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-36 6.3E-41 384.2 27.7 313 180-513 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-34 6.6E-39 334.9 24.7 310 180-511 121-450 (591)
5 4fcg_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 221.0 20.5 227 564-798 80-311 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-21 4.3E-26 207.5 16.9 245 543-798 51-301 (313)
7 1ogq_A PGIP-2, polygalacturona 99.9 4E-22 1.4E-26 211.3 13.0 227 565-801 50-281 (313)
8 4fcg_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 205.5 18.9 221 588-819 79-309 (328)
9 3rgz_A Protein brassinosteroid 99.8 6.3E-21 2.1E-25 227.7 16.2 230 562-799 415-715 (768)
10 3rgz_A Protein brassinosteroid 99.8 1.5E-20 5E-25 224.5 17.8 249 564-820 393-713 (768)
11 3v47_A TOLL-like receptor 5B a 99.8 8.4E-20 2.9E-24 204.9 19.7 252 564-817 78-401 (455)
12 2id5_A Lingo-1, leucine rich r 99.8 2.7E-19 9.1E-24 202.0 18.5 268 541-818 31-327 (477)
13 3zyi_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 199.1 18.8 224 565-799 75-301 (452)
14 3o6n_A APL1; leucine-rich repe 99.8 5.1E-19 1.8E-23 194.0 19.1 88 711-800 243-330 (390)
15 2z66_A Variable lymphocyte rec 99.8 1.6E-19 5.3E-24 191.1 14.4 230 565-800 28-260 (306)
16 3v47_A TOLL-like receptor 5B a 99.8 2.5E-19 8.4E-24 201.1 16.8 275 541-821 29-381 (455)
17 3zyj_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 198.0 18.0 225 565-799 64-290 (440)
18 3oja_B Anopheles plasmodium-re 99.8 4.4E-19 1.5E-23 205.5 18.2 87 711-799 249-335 (597)
19 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5.2E-24 203.3 11.9 230 563-813 32-264 (487)
20 3t6q_A CD180 antigen; protein- 99.8 9.5E-19 3.3E-23 203.9 18.9 182 613-798 372-557 (606)
21 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.8E-23 196.9 18.7 247 544-800 82-332 (477)
22 3vq2_A TLR4, TOLL-like recepto 99.8 6.6E-19 2.3E-23 205.2 16.8 246 544-799 309-556 (606)
23 4eco_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 210.9 11.0 235 582-820 198-466 (636)
24 1xku_A Decorin; proteoglycan, 99.8 2E-18 6.9E-23 184.6 19.2 243 544-800 54-305 (330)
25 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-18 6E-23 180.9 18.2 200 590-798 32-235 (285)
26 4eco_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 207.0 14.3 247 563-819 247-544 (636)
27 3oja_B Anopheles plasmodium-re 99.8 1.5E-18 5E-23 201.2 18.7 262 544-821 53-334 (597)
28 3o6n_A APL1; leucine-rich repe 99.8 2.5E-18 8.6E-23 188.5 19.4 263 543-821 46-328 (390)
29 2z7x_B TOLL-like receptor 1, v 99.8 3.1E-18 1.1E-22 195.5 20.9 104 542-652 21-127 (520)
30 2z7x_B TOLL-like receptor 1, v 99.8 4.8E-18 1.6E-22 194.0 22.2 152 665-819 321-476 (520)
31 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-18 8.8E-23 183.9 18.6 243 543-800 55-306 (332)
32 4ecn_A Leucine-rich repeat pro 99.8 1.6E-18 5.5E-23 205.5 18.2 161 543-712 449-638 (876)
33 3t6q_A CD180 antigen; protein- 99.8 3.7E-18 1.3E-22 198.9 21.1 182 613-798 274-459 (606)
34 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.4E-23 202.7 16.5 263 543-820 286-554 (606)
35 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-19 5.1E-24 192.1 7.5 216 564-800 33-249 (317)
36 1xku_A Decorin; proteoglycan, 99.8 9.1E-18 3.1E-22 179.5 21.0 223 565-802 52-277 (330)
37 3zyj_A Leucine-rich repeat-con 99.8 4.6E-18 1.6E-22 189.5 18.5 232 578-820 54-288 (440)
38 2z80_A TOLL-like receptor 2, v 99.8 5.8E-19 2E-23 190.7 10.7 248 543-799 53-312 (353)
39 4ecn_A Leucine-rich repeat pro 99.8 4.1E-18 1.4E-22 202.1 18.8 224 563-798 546-816 (876)
40 2ft3_A Biglycan; proteoglycan, 99.8 8.9E-18 3.1E-22 179.7 19.6 241 545-802 36-278 (332)
41 3zyi_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 189.1 19.0 232 579-821 66-300 (452)
42 4fmz_A Internalin; leucine ric 99.8 1.5E-17 5.3E-22 179.2 21.4 253 544-821 68-321 (347)
43 2z66_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 181.9 13.8 235 575-820 15-257 (306)
44 4fmz_A Internalin; leucine ric 99.8 1.7E-17 5.8E-22 178.8 20.7 256 542-821 88-343 (347)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-17 5.9E-22 191.1 20.7 149 665-816 350-502 (562)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-17 7.2E-22 190.3 21.3 269 542-819 52-481 (562)
47 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-17 4.7E-22 174.1 17.3 205 564-778 31-239 (285)
48 3j0a_A TOLL-like receptor 5; m 99.7 1.6E-17 5.4E-22 200.4 19.4 276 540-821 22-372 (844)
49 1wwl_A Monocyte differentiatio 99.7 2.3E-18 7.8E-23 182.4 10.6 202 588-799 93-307 (312)
50 2z80_A TOLL-like receptor 2, v 99.7 3.5E-18 1.2E-22 184.6 10.5 248 565-821 52-311 (353)
51 1ziw_A TOLL-like receptor 3; i 99.7 1.5E-17 5.2E-22 196.5 15.9 247 542-796 25-304 (680)
52 1o6v_A Internalin A; bacterial 99.7 1.2E-16 4.2E-21 179.3 22.0 125 688-821 217-341 (466)
53 2z63_A TOLL-like receptor 4, v 99.7 2.2E-17 7.7E-22 190.8 16.1 206 614-820 279-527 (570)
54 1o6v_A Internalin A; bacterial 99.7 1.5E-16 5E-21 178.7 21.3 197 613-821 173-385 (466)
55 3rfs_A Internalin B, repeat mo 99.7 5.8E-17 2E-21 167.9 16.6 209 563-790 39-248 (272)
56 2z62_A TOLL-like receptor 4, v 99.7 4.2E-17 1.4E-21 169.5 15.4 199 566-775 29-235 (276)
57 3j0a_A TOLL-like receptor 5; m 99.7 7E-17 2.4E-21 194.8 19.2 270 543-818 49-388 (844)
58 3rfs_A Internalin B, repeat mo 99.7 5.3E-17 1.8E-21 168.2 15.2 194 586-796 37-230 (272)
59 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.4E-22 187.6 11.0 223 580-821 20-247 (487)
60 2z81_A CD282 antigen, TOLL-lik 99.7 2.3E-17 7.9E-22 189.7 13.3 153 542-701 26-181 (549)
61 3bz5_A Internalin-J, INLJ; leu 99.7 1.9E-16 6.5E-21 176.4 20.2 220 543-796 43-262 (457)
62 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.4E-21 163.0 19.0 191 575-776 24-217 (270)
63 2z63_A TOLL-like receptor 4, v 99.7 5.7E-17 1.9E-21 187.4 15.8 241 544-799 284-529 (570)
64 3bz5_A Internalin-J, INLJ; leu 99.7 2.1E-16 7.2E-21 176.0 19.7 251 543-827 65-323 (457)
65 1p9a_G Platelet glycoprotein I 99.7 1.1E-16 3.7E-21 167.2 16.2 197 564-775 9-206 (290)
66 1ziw_A TOLL-like receptor 3; i 99.7 2.9E-16 1E-20 185.4 21.4 273 544-818 250-567 (680)
67 2z81_A CD282 antigen, TOLL-lik 99.7 2.6E-17 8.7E-22 189.4 11.8 154 565-725 26-181 (549)
68 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-17 5.2E-22 176.5 8.8 238 543-801 35-275 (317)
69 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.1E-22 176.9 7.9 231 581-820 56-305 (312)
70 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.7E-21 167.0 15.7 197 563-783 39-235 (308)
71 2o6q_A Variable lymphocyte rec 99.7 6.4E-16 2.2E-20 159.9 19.2 195 591-799 17-216 (270)
72 1p9a_G Platelet glycoprotein I 99.7 3.7E-16 1.3E-20 163.2 16.9 198 586-798 6-205 (290)
73 2z62_A TOLL-like receptor 4, v 99.7 2.8E-16 9.6E-21 163.3 14.9 210 579-799 19-235 (276)
74 2xwt_C Thyrotropin receptor; s 99.7 3.1E-16 1E-20 159.2 14.9 196 590-798 31-236 (239)
75 2ast_B S-phase kinase-associat 99.7 2.7E-17 9.3E-22 176.4 6.2 225 583-815 61-300 (336)
76 2ca6_A RAN GTPase-activating p 99.7 2.9E-18 9.9E-23 187.7 -2.0 239 563-801 30-316 (386)
77 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.9E-21 169.2 8.8 200 588-799 89-305 (310)
78 4glp_A Monocyte differentiatio 99.7 2.2E-16 7.7E-21 166.9 11.0 206 564-776 90-306 (310)
79 1h6u_A Internalin H; cell adhe 99.7 1.4E-15 4.9E-20 160.3 17.0 192 586-799 37-228 (308)
80 2ca6_A RAN GTPase-activating p 99.6 1.3E-17 4.6E-22 182.4 0.8 243 579-821 21-313 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.6 4.2E-15 1.5E-19 170.5 21.1 224 542-801 61-297 (622)
82 3m19_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 153.1 16.4 175 591-776 15-191 (251)
83 3g06_A SSPH2 (leucine-rich rep 99.6 9.1E-15 3.1E-19 167.7 21.5 103 668-783 201-303 (622)
84 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.1E-21 170.6 5.8 222 591-821 48-282 (336)
85 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 5.9E-20 153.6 11.9 198 617-823 31-238 (239)
86 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 145.7 13.5 152 614-775 41-192 (197)
87 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-14 4.9E-19 169.6 19.2 110 541-652 51-185 (635)
88 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.6E-19 152.2 13.8 175 586-781 42-216 (291)
89 3m19_A Variable lymphocyte rec 99.6 3E-14 1E-18 145.5 16.5 167 575-752 22-191 (251)
90 1w5s_A Origin recognition comp 99.6 3E-14 1E-18 157.3 17.5 283 182-480 21-372 (412)
91 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.3E-19 150.9 13.9 172 612-800 41-212 (291)
92 1z7x_W Ribonuclease inhibitor; 99.6 2E-16 7E-21 177.6 -0.7 253 544-798 5-294 (461)
93 1m9s_A Internalin B; cell inva 99.5 2.4E-14 8.3E-19 164.0 15.1 171 586-776 39-209 (605)
94 1jl5_A Outer protein YOPM; leu 99.5 7.6E-14 2.6E-18 155.2 18.6 219 565-814 173-422 (454)
95 1jl5_A Outer protein YOPM; leu 99.5 1E-13 3.5E-18 154.2 19.3 156 543-726 112-267 (454)
96 2qen_A Walker-type ATPase; unk 99.5 2.4E-13 8.1E-18 146.5 21.5 283 181-507 10-349 (350)
97 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4E-18 148.7 18.9 221 565-798 30-256 (350)
98 4ezg_A Putative uncharacterize 99.5 2.5E-14 8.5E-19 140.2 12.1 153 636-799 40-192 (197)
99 3cvr_A Invasion plasmid antige 99.5 2.3E-14 7.8E-19 162.3 13.2 189 566-789 60-255 (571)
100 1m9s_A Internalin B; cell inva 99.5 2.9E-14 9.8E-19 163.4 13.9 173 612-801 38-210 (605)
101 3cvr_A Invasion plasmid antige 99.5 4.3E-14 1.5E-18 160.1 14.7 177 591-801 60-243 (571)
102 2fna_A Conserved hypothetical 99.5 6.7E-13 2.3E-17 143.3 23.4 282 181-506 11-356 (357)
103 1z7x_W Ribonuclease inhibitor; 99.5 6.8E-16 2.3E-20 173.3 -1.1 257 565-821 3-294 (461)
104 4ay9_X Follicle-stimulating ho 99.5 4.9E-14 1.7E-18 151.6 13.4 227 578-818 20-253 (350)
105 3goz_A Leucine-rich repeat-con 99.5 1.8E-15 6.3E-20 163.7 2.1 232 564-800 21-296 (362)
106 4g8a_A TOLL-like receptor 4; l 99.5 1.9E-13 6.6E-18 159.9 18.5 228 564-798 348-577 (635)
107 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 136.9 13.9 160 618-789 29-190 (208)
108 2o6s_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 136.1 13.9 176 579-775 19-196 (208)
109 3goz_A Leucine-rich repeat-con 99.5 2.8E-15 9.4E-20 162.3 0.5 238 541-779 21-299 (362)
110 2v9t_B SLIT homolog 2 protein 99.5 2.9E-13 9.9E-18 134.9 14.3 150 620-776 14-164 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 3.1E-13 1.1E-17 134.7 14.3 153 620-777 14-166 (220)
112 3e6j_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 133.0 14.8 149 620-777 22-172 (229)
113 1dce_A Protein (RAB geranylger 99.4 4E-15 1.4E-19 169.5 -2.3 197 614-816 346-565 (567)
114 2xot_A Amphoterin-induced prot 99.4 4E-13 1.4E-17 145.0 13.0 152 618-775 40-200 (361)
115 2qby_B CDC6 homolog 3, cell di 99.4 3E-11 1E-15 131.7 26.0 279 183-480 20-340 (384)
116 1xeu_A Internalin C; cellular 99.4 7.4E-13 2.5E-17 135.9 12.3 147 585-750 36-182 (263)
117 1xeu_A Internalin C; cellular 99.4 3.7E-13 1.3E-17 138.1 9.6 172 588-781 17-188 (263)
118 1dce_A Protein (RAB geranylger 99.4 1.3E-14 4.3E-19 165.4 -2.5 120 668-794 441-566 (567)
119 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4E-16 135.3 21.0 311 182-510 16-384 (389)
120 3ogk_B Coronatine-insensitive 99.4 5.8E-14 2E-18 162.9 2.2 250 563-818 110-385 (592)
121 3ogk_B Coronatine-insensitive 99.4 1.8E-13 6.3E-18 158.7 5.6 258 563-822 218-524 (592)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 3.5E-12 1.2E-16 127.1 13.5 151 643-800 14-165 (220)
123 2p1m_B Transport inhibitor res 99.4 7.1E-14 2.4E-18 162.3 0.6 136 563-702 103-245 (594)
124 3e6j_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 127.3 13.5 130 667-799 39-170 (229)
125 2xot_A Amphoterin-induced prot 99.4 2.5E-12 8.4E-17 138.8 12.4 168 573-751 24-200 (361)
126 2v9t_B SLIT homolog 2 protein 99.4 4.5E-12 1.5E-16 126.2 13.3 133 667-800 31-164 (220)
127 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.3E-17 123.7 9.3 134 640-781 24-163 (168)
128 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.9E-17 121.9 10.9 134 616-758 23-164 (168)
129 2v1u_A Cell division control p 99.3 9.6E-11 3.3E-15 127.8 24.6 280 182-480 18-352 (387)
130 2je0_A Acidic leucine-rich nuc 99.3 2.5E-12 8.6E-17 119.5 8.8 126 667-796 16-148 (149)
131 4b8c_D Glucose-repressible alc 99.3 3.4E-13 1.2E-17 158.6 2.7 115 613-734 220-334 (727)
132 2qby_A CDC6 homolog 1, cell di 99.3 5.2E-11 1.8E-15 129.9 20.0 282 182-479 19-348 (386)
133 4b8c_D Glucose-repressible alc 99.3 5.1E-13 1.8E-17 157.1 3.7 187 590-785 173-362 (727)
134 2p1m_B Transport inhibitor res 99.3 2.4E-13 8.3E-18 157.7 -0.7 250 543-796 106-405 (594)
135 2je0_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 118.6 7.3 126 615-772 15-148 (149)
136 1w8a_A SLIT protein; signaling 99.3 1.8E-11 6.2E-16 119.0 11.3 127 620-751 11-137 (192)
137 2wfh_A SLIT homolog 2 protein 99.2 4.6E-11 1.6E-15 116.1 12.2 124 620-775 13-137 (193)
138 1njg_A DNA polymerase III subu 99.2 6E-10 2E-14 112.9 18.6 180 183-383 23-231 (250)
139 1a9n_A U2A', U2A'; complex (nu 99.2 3.8E-11 1.3E-15 114.9 8.8 130 667-803 18-155 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.2 3.9E-11 1.3E-15 114.9 7.9 129 613-775 15-151 (176)
141 1w8a_A SLIT protein; signaling 99.2 8.5E-11 2.9E-15 114.2 10.3 129 643-779 11-141 (192)
142 2wfh_A SLIT homolog 2 protein 99.1 2E-10 6.9E-15 111.6 11.5 124 671-799 13-137 (193)
143 2o6r_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 109.1 12.2 127 619-777 9-137 (177)
144 1ds9_A Outer arm dynein; leuci 99.1 5E-12 1.7E-16 123.8 -2.7 106 613-727 44-151 (198)
145 2chg_A Replication factor C sm 99.0 7.5E-09 2.6E-13 103.1 19.0 177 183-380 17-204 (226)
146 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.6E-14 103.6 12.0 126 670-800 9-136 (177)
147 3qfl_A MLA10; coiled-coil, (CC 99.0 2.3E-10 7.7E-15 99.4 3.2 78 11-90 2-82 (115)
148 1ds9_A Outer arm dynein; leuci 99.0 4E-11 1.4E-15 117.3 -1.8 136 638-779 16-155 (198)
149 3sb4_A Hypothetical leucine ri 98.9 5E-10 1.7E-14 119.1 5.3 88 563-653 23-137 (329)
150 2r9u_A Variable lymphocyte rec 98.9 4.8E-09 1.7E-13 99.8 10.1 106 671-782 15-122 (174)
151 3g39_A Variable lymphocyte rec 98.9 6.1E-09 2.1E-13 98.7 10.1 102 670-776 11-114 (170)
152 3sb4_A Hypothetical leucine ri 98.9 3.1E-09 1.1E-13 112.8 8.9 201 584-794 87-327 (329)
153 1sxj_B Activator 1 37 kDa subu 98.9 4.9E-08 1.7E-12 103.3 17.9 179 183-382 21-212 (323)
154 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 95.8 10.4 102 618-751 10-113 (170)
155 1hqc_A RUVB; extended AAA-ATPa 98.8 3E-07 1E-11 97.3 20.9 242 183-478 12-297 (324)
156 2r9u_A Variable lymphocyte rec 98.8 2.8E-08 9.5E-13 94.5 10.4 100 620-751 15-116 (174)
157 1iqp_A RFCS; clamp loader, ext 98.7 4.3E-07 1.5E-11 96.1 19.5 179 183-382 25-214 (327)
158 3un9_A NLR family member X1; l 98.6 1.4E-09 4.9E-14 116.9 -3.0 163 589-751 71-250 (372)
159 3un9_A NLR family member X1; l 98.6 1.4E-09 4.9E-14 117.0 -3.1 158 616-776 71-251 (372)
160 2ra8_A Uncharacterized protein 98.6 1.9E-08 6.3E-13 107.3 3.7 68 583-652 132-205 (362)
161 2ifg_A High affinity nerve gro 98.6 1.4E-07 4.7E-12 100.9 10.1 93 680-775 20-114 (347)
162 4fdw_A Leucine rich hypothetic 98.6 1.2E-06 4.1E-11 95.1 17.5 195 584-798 152-355 (401)
163 2ra8_A Uncharacterized protein 98.5 3.5E-08 1.2E-12 105.2 4.7 14 614-627 136-149 (362)
164 1jr3_A DNA polymerase III subu 98.5 1.5E-06 5.1E-11 93.8 17.3 187 183-380 16-221 (373)
165 3te6_A Regulatory protein SIR3 98.5 9.9E-07 3.4E-11 91.1 14.8 162 183-347 20-211 (318)
166 4fdw_A Leucine rich hypothetic 98.5 1.5E-06 5.2E-11 94.2 16.6 212 566-798 158-380 (401)
167 3pfi_A Holliday junction ATP-d 98.5 4.1E-06 1.4E-10 89.0 19.2 243 182-480 28-314 (338)
168 2ifg_A High affinity nerve gro 98.4 3.8E-07 1.3E-11 97.5 9.2 101 696-799 12-114 (347)
169 2chq_A Replication factor C sm 98.4 2.5E-06 8.7E-11 89.8 15.1 173 183-379 17-203 (319)
170 1sxj_A Activator 1 95 kDa subu 98.4 1.9E-06 6.5E-11 96.9 13.3 183 183-381 39-254 (516)
171 1sxj_D Activator 1 41 kDa subu 98.3 9.7E-06 3.3E-10 86.7 17.8 186 183-379 37-234 (353)
172 1jbk_A CLPB protein; beta barr 98.2 2.9E-06 1E-10 81.7 9.4 45 183-228 22-66 (195)
173 3h4m_A Proteasome-activating n 98.2 2.7E-05 9.3E-10 80.3 16.6 171 182-379 16-230 (285)
174 3bos_A Putative DNA replicatio 98.2 1E-05 3.6E-10 81.1 12.4 156 191-379 39-216 (242)
175 1sxj_E Activator 1 40 kDa subu 98.2 2.2E-05 7.5E-10 83.9 15.3 186 183-379 14-236 (354)
176 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.8E-11 80.2 5.6 93 684-776 53-151 (176)
177 3u61_B DNA polymerase accessor 98.1 4.8E-05 1.7E-09 80.1 16.6 167 183-376 26-212 (324)
178 1d2n_A N-ethylmaleimide-sensit 98.1 2.8E-05 9.6E-10 79.6 14.2 186 185-400 35-263 (272)
179 3d8b_A Fidgetin-like protein 1 98.1 6E-05 2.1E-09 80.3 17.1 173 183-381 84-296 (357)
180 1a5t_A Delta prime, HOLB; zinc 98.1 7.7E-05 2.6E-09 78.7 17.4 160 192-379 11-204 (334)
181 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00015 5.1E-09 75.9 18.9 174 183-381 12-224 (322)
182 3eie_A Vacuolar protein sortin 98.0 0.0001 3.6E-09 77.3 17.3 173 183-381 18-229 (322)
183 3pvs_A Replication-associated 98.0 6.5E-05 2.2E-09 82.1 15.6 171 183-379 26-214 (447)
184 2z4s_A Chromosomal replication 98.0 4.5E-05 1.5E-09 83.6 13.9 153 205-378 130-304 (440)
185 1sxj_C Activator 1 40 kDa subu 98.0 0.00016 5.5E-09 76.6 17.1 173 183-376 25-208 (340)
186 3b9p_A CG5977-PA, isoform A; A 98.0 0.00026 8.8E-09 73.4 18.3 173 183-381 21-234 (297)
187 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00026 9E-09 71.7 17.9 172 184-380 7-222 (262)
188 3e4g_A ATP synthase subunit S, 98.0 5.2E-06 1.8E-10 77.4 4.5 66 689-754 82-153 (176)
189 3uk6_A RUVB-like 2; hexameric 97.9 4.5E-05 1.5E-09 82.0 12.6 190 183-379 44-302 (368)
190 3syl_A Protein CBBX; photosynt 97.9 0.00013 4.6E-09 76.1 15.0 146 185-348 33-218 (309)
191 2qp9_X Vacuolar protein sortin 97.9 0.00019 6.4E-09 76.3 15.5 173 183-381 51-262 (355)
192 2zan_A Vacuolar protein sortin 97.9 0.00046 1.6E-08 75.6 18.9 174 183-381 134-346 (444)
193 3vfd_A Spastin; ATPase, microt 97.8 0.00038 1.3E-08 75.1 17.8 174 182-381 114-327 (389)
194 1l8q_A Chromosomal replication 97.8 0.00021 7E-09 75.2 14.7 158 193-375 24-203 (324)
195 1in4_A RUVB, holliday junction 97.8 0.0013 4.4E-08 69.2 20.4 163 184-379 26-222 (334)
196 3cf0_A Transitional endoplasmi 97.8 0.00044 1.5E-08 71.6 16.1 166 183-375 15-223 (301)
197 2p65_A Hypothetical protein PF 97.8 5E-05 1.7E-09 72.5 8.1 45 183-228 22-66 (187)
198 1io0_A Tropomodulin; LRR prote 97.7 3.2E-06 1.1E-10 81.0 -1.2 17 584-600 30-46 (185)
199 1io0_A Tropomodulin; LRR prote 97.7 2.6E-06 9E-11 81.6 -2.4 115 613-727 32-162 (185)
200 1qvr_A CLPB protein; coiled co 97.6 0.00026 9E-09 84.6 13.2 147 183-346 170-344 (854)
201 4b4t_J 26S protease regulatory 97.6 0.0012 4E-08 70.0 16.2 160 182-372 147-353 (405)
202 3pxg_A Negative regulator of g 97.6 0.00024 8.3E-09 78.5 11.0 140 183-347 180-338 (468)
203 3jrn_A AT1G72930 protein; TIR 97.6 2.9E-05 9.9E-10 71.9 2.9 79 79-162 70-151 (176)
204 4b4t_L 26S protease subunit RP 97.5 0.0013 4.5E-08 70.8 16.0 160 182-372 180-386 (437)
205 3ozi_A L6TR; plant TIR domain, 97.5 5.3E-06 1.8E-10 78.2 -2.4 90 69-162 87-179 (204)
206 2gno_A DNA polymerase III, gam 97.5 0.001 3.6E-08 68.6 14.3 138 189-347 3-152 (305)
207 4fs7_A Uncharacterized protein 97.5 0.0013 4.3E-08 71.3 15.4 123 666-798 251-376 (394)
208 3ec2_A DNA replication protein 97.5 0.00017 5.9E-09 68.5 7.3 99 204-321 37-144 (180)
209 1ofh_A ATP-dependent HSL prote 97.5 0.00052 1.8E-08 71.5 11.4 44 184-227 16-72 (310)
210 3rw6_A Nuclear RNA export fact 97.4 2E-05 7E-10 79.3 0.3 80 713-794 167-257 (267)
211 3co5_A Putative two-component 97.4 0.00019 6.5E-09 65.2 6.7 44 184-227 5-49 (143)
212 3n70_A Transport activator; si 97.4 0.00038 1.3E-08 63.3 8.4 43 185-227 3-46 (145)
213 2w58_A DNAI, primosome compone 97.4 0.00021 7.2E-09 69.3 7.1 109 192-320 38-159 (202)
214 4b4t_H 26S protease regulatory 97.4 0.0016 5.5E-08 69.9 14.3 159 183-372 209-414 (467)
215 4b4t_I 26S protease regulatory 97.4 0.0023 8E-08 67.9 15.1 160 182-372 181-387 (437)
216 4b4t_M 26S protease regulatory 97.4 0.0009 3.1E-08 72.0 12.0 160 182-372 180-386 (434)
217 4b4t_K 26S protease regulatory 97.4 0.0013 4.5E-08 70.7 13.1 46 182-227 171-228 (428)
218 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.6E-08 77.6 14.1 149 183-347 186-362 (758)
219 1lv7_A FTSH; alpha/beta domain 97.3 0.0044 1.5E-07 62.4 15.8 169 183-378 12-223 (257)
220 3rw6_A Nuclear RNA export fact 97.2 0.00015 5.3E-09 72.9 3.8 16 688-703 192-207 (267)
221 3pxi_A Negative regulator of g 97.2 0.0031 1.1E-07 74.4 14.9 142 183-347 180-338 (758)
222 2r62_A Cell division protease 97.2 0.00049 1.7E-08 70.0 7.0 46 183-228 11-67 (268)
223 1ojl_A Transcriptional regulat 97.2 0.0064 2.2E-07 62.8 15.4 44 184-227 3-47 (304)
224 2ce7_A Cell division protein F 97.1 0.009 3.1E-07 65.3 16.8 164 183-373 16-221 (476)
225 4fcw_A Chaperone protein CLPB; 97.1 0.0024 8.2E-08 66.5 11.7 43 185-227 19-69 (311)
226 3hu3_A Transitional endoplasmi 97.1 0.0056 1.9E-07 67.5 14.6 170 183-379 204-414 (489)
227 3cf2_A TER ATPase, transitiona 97.1 0.007 2.4E-07 70.3 15.7 161 182-373 203-407 (806)
228 2kjq_A DNAA-related protein; s 97.0 0.00072 2.5E-08 61.7 5.9 33 195-228 27-59 (149)
229 4gt6_A Cell surface protein; l 97.0 0.018 6E-07 62.1 17.9 83 711-799 283-368 (394)
230 4fs7_A Uncharacterized protein 96.9 0.012 4.2E-07 63.4 15.4 142 636-793 249-393 (394)
231 4gt6_A Cell surface protein; l 96.8 0.011 3.7E-07 63.8 14.1 100 687-795 283-385 (394)
232 2bjv_A PSP operon transcriptio 96.8 0.0038 1.3E-07 63.2 9.9 44 184-227 7-51 (265)
233 3t15_A Ribulose bisphosphate c 96.8 0.0073 2.5E-07 62.1 12.1 25 203-227 34-58 (293)
234 2cvh_A DNA repair and recombin 96.6 0.0073 2.5E-07 59.0 9.5 55 194-254 8-63 (220)
235 2x8a_A Nuclear valosin-contain 96.4 0.099 3.4E-06 52.8 16.9 21 207-227 46-66 (274)
236 3m6a_A ATP-dependent protease 96.3 0.0092 3.2E-07 67.0 9.5 44 184-227 82-130 (543)
237 1ixz_A ATP-dependent metallopr 96.2 0.049 1.7E-06 54.5 13.6 46 183-228 16-72 (254)
238 2qgz_A Helicase loader, putati 96.2 0.0039 1.3E-07 64.5 5.2 36 192-227 137-174 (308)
239 3pxi_A Negative regulator of g 96.2 0.007 2.4E-07 71.4 8.0 142 183-347 491-675 (758)
240 1ypw_A Transitional endoplasmi 96.2 0.036 1.2E-06 65.3 13.9 46 182-227 203-260 (806)
241 2dhr_A FTSH; AAA+ protein, hex 96.1 0.054 1.9E-06 59.5 14.3 46 183-228 31-87 (499)
242 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0047 1.6E-07 63.1 5.2 35 204-244 122-156 (331)
243 1r6b_X CLPA protein; AAA+, N-t 95.7 0.092 3.1E-06 61.8 15.0 45 183-227 458-510 (758)
244 1v5w_A DMC1, meiotic recombina 95.7 0.032 1.1E-06 58.6 9.8 64 193-256 109-176 (343)
245 3io5_A Recombination and repai 95.6 0.025 8.5E-07 57.5 8.1 57 193-251 12-73 (333)
246 4h09_A Hypothetical leucine ri 95.6 0.19 6.4E-06 53.5 15.5 101 689-796 237-341 (379)
247 2z43_A DNA repair and recombin 95.6 0.022 7.7E-07 59.3 7.9 64 193-256 94-161 (324)
248 3ice_A Transcription terminati 95.5 0.026 8.8E-07 58.9 7.7 53 194-248 163-216 (422)
249 1sky_E F1-ATPase, F1-ATP synth 95.4 0.019 6.4E-07 62.0 6.6 62 195-258 141-203 (473)
250 3c8u_A Fructokinase; YP_612366 95.2 0.013 4.3E-07 56.8 4.4 35 193-227 9-44 (208)
251 2i1q_A DNA repair and recombin 95.2 0.029 1E-06 58.4 7.5 64 193-256 85-162 (322)
252 3hr8_A Protein RECA; alpha and 95.2 0.024 8.3E-07 59.3 6.7 56 193-251 47-104 (356)
253 1qvr_A CLPB protein; coiled co 95.2 0.083 2.8E-06 63.0 12.2 44 184-227 559-610 (854)
254 1rz3_A Hypothetical protein rb 95.2 0.016 5.3E-07 55.8 4.8 38 190-227 5-44 (201)
255 3lw7_A Adenylate kinase relate 94.9 0.013 4.4E-07 54.8 3.1 20 206-225 2-21 (179)
256 1qhx_A CPT, protein (chloramph 94.8 0.013 4.3E-07 55.1 3.0 22 206-227 4-25 (178)
257 3dm5_A SRP54, signal recogniti 94.8 0.17 5.9E-06 54.3 11.9 24 204-227 99-122 (443)
258 1zp6_A Hypothetical protein AT 94.8 0.017 5.7E-07 55.0 3.6 24 204-227 8-31 (191)
259 3kl4_A SRP54, signal recogniti 94.8 0.18 6.1E-06 54.2 11.9 39 204-245 96-134 (433)
260 1kgd_A CASK, peripheral plasma 94.8 0.015 5.1E-07 54.8 3.2 23 205-227 5-27 (180)
261 1pgv_A TMD-1, tropomodulin TMD 94.7 0.0032 1.1E-07 59.7 -1.7 69 586-654 37-112 (197)
262 3kb2_A SPBC2 prophage-derived 94.7 0.016 5.6E-07 53.9 3.2 22 206-227 2-23 (173)
263 3vaa_A Shikimate kinase, SK; s 94.6 0.018 6.2E-07 55.2 3.4 24 204-227 24-47 (199)
264 1ly1_A Polynucleotide kinase; 94.5 0.019 6.6E-07 53.9 3.3 22 206-227 3-24 (181)
265 1n0w_A DNA repair protein RAD5 94.5 0.074 2.5E-06 52.6 7.8 61 193-253 11-75 (243)
266 1pgv_A TMD-1, tropomodulin TMD 94.5 0.0062 2.1E-07 57.7 -0.3 113 614-750 38-167 (197)
267 3lda_A DNA repair protein RAD5 94.4 0.064 2.2E-06 57.2 7.5 63 192-254 164-230 (400)
268 3uie_A Adenylyl-sulfate kinase 94.4 0.024 8.1E-07 54.4 3.7 25 203-227 23-47 (200)
269 1ex7_A Guanylate kinase; subst 94.4 0.016 5.5E-07 54.6 2.4 22 206-227 2-23 (186)
270 1jr3_D DNA polymerase III, del 94.3 0.37 1.3E-05 50.4 13.3 159 193-378 7-183 (343)
271 4eun_A Thermoresistant glucoki 94.3 0.022 7.6E-07 54.6 3.4 25 203-227 27-51 (200)
272 1kag_A SKI, shikimate kinase I 94.3 0.018 6E-07 53.8 2.6 22 206-227 5-26 (173)
273 2zr9_A Protein RECA, recombina 94.3 0.04 1.4E-06 57.9 5.5 56 193-251 47-104 (349)
274 3tau_A Guanylate kinase, GMP k 94.3 0.024 8.3E-07 54.8 3.6 24 204-227 7-30 (208)
275 4h09_A Hypothetical leucine ri 94.3 0.52 1.8E-05 50.0 14.5 103 665-774 237-343 (379)
276 3trf_A Shikimate kinase, SK; a 94.2 0.023 7.8E-07 53.7 3.2 23 205-227 5-27 (185)
277 4gp7_A Metallophosphoesterase; 94.2 0.024 8.3E-07 52.8 3.2 23 204-226 8-30 (171)
278 1tue_A Replication protein E1; 94.1 0.036 1.2E-06 52.4 4.2 36 192-227 45-80 (212)
279 2b8t_A Thymidine kinase; deoxy 94.1 0.033 1.1E-06 54.1 4.1 109 204-321 11-127 (223)
280 3tr0_A Guanylate kinase, GMP k 94.1 0.028 9.5E-07 54.1 3.6 23 205-227 7-29 (205)
281 3a00_A Guanylate kinase, GMP k 94.1 0.021 7.2E-07 54.1 2.6 22 206-227 2-23 (186)
282 1odf_A YGR205W, hypothetical 3 94.1 0.039 1.3E-06 56.2 4.8 25 203-227 29-53 (290)
283 3hws_A ATP-dependent CLP prote 94.1 0.035 1.2E-06 59.0 4.5 43 185-227 17-73 (363)
284 1knq_A Gluconate kinase; ALFA/ 94.0 0.028 9.6E-07 52.5 3.4 24 204-227 7-30 (175)
285 1nks_A Adenylate kinase; therm 94.0 0.027 9.3E-07 53.5 3.3 22 206-227 2-23 (194)
286 2bdt_A BH3686; alpha-beta prot 94.0 0.028 9.7E-07 53.3 3.4 22 206-227 3-24 (189)
287 3t61_A Gluconokinase; PSI-biol 93.9 0.023 7.8E-07 54.6 2.6 23 205-227 18-40 (202)
288 2rhm_A Putative kinase; P-loop 93.9 0.033 1.1E-06 52.9 3.6 24 204-227 4-27 (193)
289 2ze6_A Isopentenyl transferase 93.9 0.03 1E-06 56.0 3.3 22 206-227 2-23 (253)
290 1ye8_A Protein THEP1, hypothet 93.9 0.03 1E-06 52.5 3.2 22 207-228 2-23 (178)
291 1kht_A Adenylate kinase; phosp 93.9 0.03 1E-06 53.1 3.2 22 206-227 4-25 (192)
292 1lvg_A Guanylate kinase, GMP k 93.8 0.025 8.6E-07 54.2 2.6 23 205-227 4-26 (198)
293 3asz_A Uridine kinase; cytidin 93.8 0.033 1.1E-06 53.9 3.5 24 204-227 5-28 (211)
294 2j41_A Guanylate kinase; GMP, 93.8 0.035 1.2E-06 53.5 3.6 24 204-227 5-28 (207)
295 2qor_A Guanylate kinase; phosp 93.8 0.028 9.5E-07 54.1 2.8 24 204-227 11-34 (204)
296 3ney_A 55 kDa erythrocyte memb 93.8 0.033 1.1E-06 52.9 3.2 24 204-227 18-41 (197)
297 2q6t_A DNAB replication FORK h 93.7 0.2 6.9E-06 54.6 10.0 72 187-262 182-253 (444)
298 1u94_A RECA protein, recombina 93.7 0.057 2E-06 56.7 5.3 56 193-251 49-106 (356)
299 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.04 1.4E-06 60.7 4.2 41 184-227 23-63 (500)
300 1xp8_A RECA protein, recombina 93.7 0.069 2.4E-06 56.3 5.8 56 193-251 60-117 (366)
301 3iij_A Coilin-interacting nucl 93.6 0.029 9.9E-07 52.7 2.6 23 205-227 11-33 (180)
302 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.21 7.2E-06 51.9 9.4 105 205-321 171-276 (330)
303 2ck3_D ATP synthase subunit be 93.6 0.22 7.6E-06 53.5 9.6 65 194-260 142-207 (482)
304 1zuh_A Shikimate kinase; alpha 93.6 0.036 1.2E-06 51.4 3.2 24 204-227 6-29 (168)
305 3umf_A Adenylate kinase; rossm 93.6 0.039 1.3E-06 53.4 3.5 25 203-227 27-51 (217)
306 1via_A Shikimate kinase; struc 93.6 0.03 1E-06 52.4 2.6 22 206-227 5-26 (175)
307 2r44_A Uncharacterized protein 93.6 0.037 1.2E-06 57.9 3.6 41 184-227 28-68 (331)
308 3bh0_A DNAB-like replicative h 93.6 0.16 5.5E-06 52.5 8.4 64 193-261 56-119 (315)
309 2jaq_A Deoxyguanosine kinase; 93.5 0.036 1.2E-06 53.2 3.2 21 207-227 2-22 (205)
310 1xjc_A MOBB protein homolog; s 93.5 0.039 1.3E-06 50.9 3.3 24 204-227 3-26 (169)
311 2qt1_A Nicotinamide riboside k 93.5 0.041 1.4E-06 53.0 3.7 25 203-227 19-43 (207)
312 1um8_A ATP-dependent CLP prote 93.5 0.048 1.6E-06 58.2 4.5 23 205-227 72-94 (376)
313 1gvn_B Zeta; postsegregational 93.5 0.056 1.9E-06 55.1 4.7 25 203-227 31-55 (287)
314 3l0o_A Transcription terminati 93.5 0.064 2.2E-06 55.9 5.0 53 194-247 164-216 (427)
315 3aez_A Pantothenate kinase; tr 93.5 0.043 1.5E-06 56.6 3.7 25 203-227 88-112 (312)
316 2c95_A Adenylate kinase 1; tra 93.4 0.042 1.4E-06 52.3 3.4 24 204-227 8-31 (196)
317 1iy2_A ATP-dependent metallopr 93.4 0.048 1.6E-06 55.4 4.0 46 183-228 40-96 (278)
318 1y63_A LMAJ004144AAA protein; 93.4 0.045 1.5E-06 51.6 3.6 24 204-227 9-32 (184)
319 2bbw_A Adenylate kinase 4, AK4 93.4 0.041 1.4E-06 54.7 3.4 24 204-227 26-49 (246)
320 1cke_A CK, MSSA, protein (cyti 93.4 0.039 1.3E-06 54.1 3.2 22 206-227 6-27 (227)
321 1tev_A UMP-CMP kinase; ploop, 93.4 0.043 1.5E-06 52.2 3.4 23 205-227 3-25 (196)
322 3jvv_A Twitching mobility prot 93.4 0.08 2.7E-06 55.6 5.7 116 195-321 115-232 (356)
323 1ukz_A Uridylate kinase; trans 93.4 0.047 1.6E-06 52.4 3.7 25 203-227 13-37 (203)
324 2if2_A Dephospho-COA kinase; a 93.3 0.039 1.3E-06 53.0 3.1 22 206-227 2-23 (204)
325 1znw_A Guanylate kinase, GMP k 93.3 0.045 1.5E-06 52.8 3.4 25 203-227 18-42 (207)
326 1uf9_A TT1252 protein; P-loop, 93.2 0.049 1.7E-06 52.2 3.6 25 203-227 6-30 (203)
327 3cm0_A Adenylate kinase; ATP-b 93.2 0.047 1.6E-06 51.5 3.4 23 205-227 4-26 (186)
328 2yvu_A Probable adenylyl-sulfa 93.2 0.052 1.8E-06 51.3 3.7 24 204-227 12-35 (186)
329 3tqc_A Pantothenate kinase; bi 93.2 0.064 2.2E-06 55.3 4.5 25 203-227 90-114 (321)
330 1jjv_A Dephospho-COA kinase; P 93.2 0.047 1.6E-06 52.6 3.4 22 206-227 3-24 (206)
331 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.049 1.7E-06 54.7 3.6 23 205-227 4-26 (260)
332 1fx0_B ATP synthase beta chain 93.2 0.21 7.3E-06 53.9 8.6 65 194-260 154-219 (498)
333 1z6g_A Guanylate kinase; struc 93.2 0.04 1.4E-06 53.6 2.9 24 204-227 22-45 (218)
334 2iyv_A Shikimate kinase, SK; t 93.2 0.035 1.2E-06 52.3 2.4 22 206-227 3-24 (184)
335 2bwj_A Adenylate kinase 5; pho 93.1 0.044 1.5E-06 52.3 3.1 23 205-227 12-34 (199)
336 1htw_A HI0065; nucleotide-bind 93.1 0.057 2E-06 49.4 3.6 25 203-227 31-55 (158)
337 1qf9_A UMP/CMP kinase, protein 93.1 0.057 1.9E-06 51.2 3.8 23 205-227 6-28 (194)
338 1e6c_A Shikimate kinase; phosp 93.1 0.04 1.4E-06 51.3 2.6 22 206-227 3-24 (173)
339 2c9o_A RUVB-like 1; hexameric 93.1 0.073 2.5E-06 58.4 5.1 46 183-228 37-86 (456)
340 2ga8_A Hypothetical 39.9 kDa p 93.0 0.073 2.5E-06 55.2 4.7 25 203-227 22-46 (359)
341 2jeo_A Uridine-cytidine kinase 93.0 0.056 1.9E-06 53.7 3.7 25 203-227 23-47 (245)
342 2p5t_B PEZT; postsegregational 93.0 0.06 2E-06 53.8 4.0 25 203-227 30-54 (253)
343 4a74_A DNA repair and recombin 93.0 0.065 2.2E-06 52.5 4.1 53 194-246 13-69 (231)
344 2plr_A DTMP kinase, probable t 93.0 0.052 1.8E-06 52.4 3.4 24 205-228 4-27 (213)
345 1s96_A Guanylate kinase, GMP k 93.0 0.054 1.9E-06 52.6 3.4 25 204-228 15-39 (219)
346 2pt5_A Shikimate kinase, SK; a 92.9 0.055 1.9E-06 50.0 3.2 21 207-227 2-22 (168)
347 1g5t_A COB(I)alamin adenosyltr 92.9 0.043 1.5E-06 51.7 2.4 115 206-323 29-166 (196)
348 1uj2_A Uridine-cytidine kinase 92.8 0.06 2E-06 53.8 3.6 25 203-227 20-44 (252)
349 2cdn_A Adenylate kinase; phosp 92.8 0.054 1.9E-06 51.9 3.2 24 204-227 19-42 (201)
350 1rj9_A FTSY, signal recognitio 92.8 0.058 2E-06 55.3 3.5 24 204-227 101-124 (304)
351 4e22_A Cytidylate kinase; P-lo 92.7 0.06 2.1E-06 53.7 3.5 24 204-227 26-49 (252)
352 2ewv_A Twitching motility prot 92.7 0.21 7.2E-06 52.9 7.9 105 203-320 134-244 (372)
353 1aky_A Adenylate kinase; ATP:A 92.7 0.061 2.1E-06 52.4 3.4 23 205-227 4-26 (220)
354 2vli_A Antibiotic resistance p 92.7 0.043 1.5E-06 51.6 2.3 23 205-227 5-27 (183)
355 1pzn_A RAD51, DNA repair and r 92.7 0.2 7E-06 52.5 7.6 58 194-251 119-180 (349)
356 2pbr_A DTMP kinase, thymidylat 92.7 0.059 2E-06 51.2 3.2 21 207-227 2-22 (195)
357 1cr0_A DNA primase/helicase; R 92.7 0.19 6.6E-06 51.4 7.3 54 203-260 33-86 (296)
358 2f1r_A Molybdopterin-guanine d 92.6 0.041 1.4E-06 51.1 1.9 22 206-227 3-24 (171)
359 2hf9_A Probable hydrogenase ni 92.5 0.083 2.8E-06 51.6 4.2 26 203-228 36-61 (226)
360 1g41_A Heat shock protein HSLU 92.5 0.061 2.1E-06 57.9 3.3 44 184-227 16-72 (444)
361 1nn5_A Similar to deoxythymidy 92.5 0.07 2.4E-06 51.6 3.5 24 204-227 8-31 (215)
362 3fwy_A Light-independent proto 92.4 0.07 2.4E-06 55.0 3.6 41 203-246 46-86 (314)
363 1gtv_A TMK, thymidylate kinase 92.4 0.038 1.3E-06 53.5 1.5 22 206-227 1-22 (214)
364 1zd8_A GTP:AMP phosphotransfer 92.4 0.065 2.2E-06 52.5 3.2 23 205-227 7-29 (227)
365 2i3b_A HCR-ntpase, human cance 92.4 0.058 2E-06 51.0 2.7 23 206-228 2-24 (189)
366 3tlx_A Adenylate kinase 2; str 92.3 0.089 3E-06 52.2 4.1 25 203-227 27-51 (243)
367 2ehv_A Hypothetical protein PH 92.3 0.066 2.3E-06 53.2 3.2 25 203-227 28-52 (251)
368 2grj_A Dephospho-COA kinase; T 92.3 0.082 2.8E-06 50.1 3.6 25 203-227 10-34 (192)
369 2wwf_A Thymidilate kinase, put 92.3 0.072 2.5E-06 51.4 3.3 23 205-227 10-32 (212)
370 3b9q_A Chloroplast SRP recepto 92.2 0.078 2.7E-06 54.3 3.6 24 204-227 99-122 (302)
371 2px0_A Flagellar biosynthesis 92.2 0.074 2.5E-06 54.4 3.4 24 204-227 104-127 (296)
372 2z0h_A DTMP kinase, thymidylat 92.2 0.073 2.5E-06 50.7 3.2 21 207-227 2-22 (197)
373 1sq5_A Pantothenate kinase; P- 92.2 0.12 4.2E-06 53.2 5.1 25 203-227 78-102 (308)
374 3a8t_A Adenylate isopentenyltr 92.2 0.084 2.9E-06 54.4 3.8 24 204-227 39-62 (339)
375 3fb4_A Adenylate kinase; psych 92.2 0.072 2.5E-06 51.6 3.2 21 207-227 2-22 (216)
376 3d3q_A TRNA delta(2)-isopenten 92.2 0.074 2.5E-06 55.0 3.4 22 206-227 8-29 (340)
377 4a1f_A DNAB helicase, replicat 92.2 0.34 1.2E-05 50.2 8.4 65 193-262 34-98 (338)
378 3lnc_A Guanylate kinase, GMP k 92.2 0.049 1.7E-06 53.6 2.0 23 204-226 26-48 (231)
379 2onk_A Molybdate/tungstate ABC 92.2 0.077 2.6E-06 52.4 3.4 24 203-227 23-46 (240)
380 1zak_A Adenylate kinase; ATP:A 92.1 0.068 2.3E-06 52.2 2.9 23 205-227 5-27 (222)
381 2v54_A DTMP kinase, thymidylat 92.1 0.075 2.6E-06 50.9 3.2 23 205-227 4-26 (204)
382 2pez_A Bifunctional 3'-phospho 92.1 0.088 3E-06 49.3 3.6 24 204-227 4-27 (179)
383 1m7g_A Adenylylsulfate kinase; 92.0 0.089 3.1E-06 50.8 3.6 25 203-227 23-47 (211)
384 2f6r_A COA synthase, bifunctio 92.0 0.085 2.9E-06 53.6 3.6 24 203-226 73-96 (281)
385 1g8p_A Magnesium-chelatase 38 92.0 0.074 2.5E-06 56.0 3.3 44 183-227 24-67 (350)
386 3sr0_A Adenylate kinase; phosp 92.0 0.078 2.7E-06 50.9 3.1 21 207-227 2-22 (206)
387 2wsm_A Hydrogenase expression/ 92.0 0.088 3E-06 51.2 3.5 26 203-228 28-53 (221)
388 3dl0_A Adenylate kinase; phosp 92.0 0.08 2.7E-06 51.3 3.2 21 207-227 2-22 (216)
389 2pcj_A ABC transporter, lipopr 91.9 0.077 2.6E-06 51.8 3.0 24 204-227 29-52 (224)
390 3tif_A Uncharacterized ABC tra 91.9 0.088 3E-06 51.8 3.5 25 203-227 29-53 (235)
391 4g1u_C Hemin import ATP-bindin 91.9 0.13 4.3E-06 51.7 4.7 25 203-227 35-59 (266)
392 1np6_A Molybdopterin-guanine d 91.9 0.089 3E-06 48.9 3.3 24 204-227 5-28 (174)
393 2dr3_A UPF0273 protein PH0284; 91.9 0.12 3.9E-06 51.3 4.4 57 195-256 12-69 (247)
394 2xxa_A Signal recognition part 91.8 0.17 5.9E-06 54.6 5.9 42 203-246 98-139 (433)
395 2yhs_A FTSY, cell division pro 91.8 0.14 4.8E-06 55.6 5.1 24 204-227 292-315 (503)
396 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.4E-06 50.7 3.7 22 205-226 4-25 (218)
397 3exa_A TRNA delta(2)-isopenten 91.8 0.09 3.1E-06 53.4 3.4 23 205-227 3-25 (322)
398 3cmu_A Protein RECA, recombina 91.8 0.12 4.2E-06 65.5 5.3 96 193-296 1413-1515(2050)
399 3nwj_A ATSK2; P loop, shikimat 91.7 0.074 2.5E-06 52.8 2.6 23 205-227 48-70 (250)
400 3e70_C DPA, signal recognition 91.7 0.14 4.7E-06 53.1 4.7 26 202-227 126-151 (328)
401 3cf2_A TER ATPase, transitiona 91.7 0.39 1.3E-05 55.8 8.9 44 184-227 478-533 (806)
402 3b85_A Phosphate starvation-in 91.7 0.075 2.6E-06 51.2 2.5 24 204-227 21-44 (208)
403 1vma_A Cell division protein F 91.6 0.1 3.4E-06 53.6 3.6 39 204-245 103-141 (306)
404 1c9k_A COBU, adenosylcobinamid 91.6 0.15 5.1E-06 47.4 4.4 20 208-227 2-21 (180)
405 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.11 3.8E-06 50.8 3.9 49 194-245 11-60 (235)
406 2cbz_A Multidrug resistance-as 91.6 0.1 3.5E-06 51.4 3.5 25 203-227 29-53 (237)
407 3gfo_A Cobalt import ATP-bindi 91.6 0.09 3.1E-06 53.0 3.1 24 204-227 33-56 (275)
408 3crm_A TRNA delta(2)-isopenten 91.5 0.097 3.3E-06 53.7 3.4 22 206-227 6-27 (323)
409 3r20_A Cytidylate kinase; stru 91.5 0.095 3.3E-06 51.2 3.2 23 205-227 9-31 (233)
410 3foz_A TRNA delta(2)-isopenten 91.5 0.12 4.1E-06 52.4 3.9 25 203-227 8-32 (316)
411 2og2_A Putative signal recogni 91.4 0.11 3.6E-06 54.5 3.6 24 204-227 156-179 (359)
412 1b0u_A Histidine permease; ABC 91.4 0.11 3.6E-06 52.2 3.5 25 203-227 30-54 (262)
413 3ake_A Cytidylate kinase; CMP 91.3 0.1 3.5E-06 50.1 3.2 21 207-227 4-24 (208)
414 3upu_A ATP-dependent DNA helic 91.3 0.48 1.6E-05 51.9 8.9 22 206-227 46-67 (459)
415 1ji0_A ABC transporter; ATP bi 91.3 0.1 3.5E-06 51.6 3.1 24 204-227 31-54 (240)
416 1sgw_A Putative ABC transporte 91.2 0.087 3E-06 50.9 2.5 24 204-227 34-57 (214)
417 2olj_A Amino acid ABC transpor 91.2 0.11 3.9E-06 51.9 3.5 25 203-227 48-72 (263)
418 2pze_A Cystic fibrosis transme 91.2 0.11 3.6E-06 51.0 3.1 24 204-227 33-56 (229)
419 3vkw_A Replicase large subunit 91.2 1.1 3.8E-05 47.9 11.1 106 203-321 159-271 (446)
420 2wji_A Ferrous iron transport 91.2 0.13 4.3E-06 47.3 3.5 23 206-228 4-26 (165)
421 2xb4_A Adenylate kinase; ATP-b 91.1 0.11 3.7E-06 50.7 3.2 21 207-227 2-22 (223)
422 1g6h_A High-affinity branched- 91.1 0.11 3.6E-06 52.0 3.1 24 204-227 32-55 (257)
423 1e4v_A Adenylate kinase; trans 91.1 0.11 3.7E-06 50.3 3.1 21 207-227 2-22 (214)
424 2d2e_A SUFC protein; ABC-ATPas 91.1 0.11 3.7E-06 51.7 3.2 24 204-227 28-51 (250)
425 1mv5_A LMRA, multidrug resista 91.1 0.13 4.3E-06 51.0 3.6 25 203-227 26-50 (243)
426 2ff7_A Alpha-hemolysin translo 91.1 0.11 3.7E-06 51.6 3.1 24 204-227 34-57 (247)
427 3be4_A Adenylate kinase; malar 91.1 0.11 3.7E-06 50.5 3.1 22 206-227 6-27 (217)
428 2v3c_C SRP54, signal recogniti 91.1 0.12 4E-06 55.8 3.6 24 204-227 98-121 (432)
429 2r6a_A DNAB helicase, replicat 91.0 0.31 1.1E-05 53.3 7.0 69 187-259 185-253 (454)
430 2v9p_A Replication protein E1; 91.0 0.17 5.7E-06 51.7 4.5 25 203-227 124-148 (305)
431 4eaq_A DTMP kinase, thymidylat 90.9 0.22 7.5E-06 48.7 5.2 25 204-228 25-49 (229)
432 2zts_A Putative uncharacterize 90.9 0.15 5.2E-06 50.5 4.1 51 203-257 28-78 (251)
433 1ak2_A Adenylate kinase isoenz 90.9 0.13 4.5E-06 50.5 3.6 24 204-227 15-38 (233)
434 1vpl_A ABC transporter, ATP-bi 90.9 0.13 4.4E-06 51.3 3.5 25 203-227 39-63 (256)
435 2ghi_A Transport protein; mult 90.8 0.13 4.5E-06 51.4 3.5 25 203-227 44-68 (260)
436 1oix_A RAS-related protein RAB 90.8 0.12 4.1E-06 48.9 3.1 24 205-228 29-52 (191)
437 1zu4_A FTSY; GTPase, signal re 90.8 0.14 4.7E-06 53.0 3.7 40 203-245 103-142 (320)
438 2zu0_C Probable ATP-dependent 90.8 0.13 4.6E-06 51.6 3.5 25 203-227 44-68 (267)
439 2ixe_A Antigen peptide transpo 90.8 0.13 4.6E-06 51.7 3.5 25 203-227 43-67 (271)
440 2qi9_C Vitamin B12 import ATP- 90.7 0.12 4.2E-06 51.2 3.1 24 204-227 25-48 (249)
441 2qmh_A HPR kinase/phosphorylas 90.7 0.13 4.5E-06 48.3 3.1 23 205-227 34-56 (205)
442 3dzd_A Transcriptional regulat 90.6 1.1 3.8E-05 47.2 10.7 44 184-227 130-174 (368)
443 1u0j_A DNA replication protein 90.6 0.21 7.1E-06 49.6 4.6 35 193-227 91-126 (267)
444 2zej_A Dardarin, leucine-rich 90.6 0.12 4.2E-06 48.5 2.9 21 207-227 4-24 (184)
445 2nq2_C Hypothetical ABC transp 90.6 0.13 4.4E-06 51.2 3.1 24 204-227 30-53 (253)
446 2dyk_A GTP-binding protein; GT 90.6 0.16 5.4E-06 46.2 3.5 23 206-228 2-24 (161)
447 1a7j_A Phosphoribulokinase; tr 90.6 0.085 2.9E-06 53.8 1.8 24 204-227 4-27 (290)
448 2eyu_A Twitching motility prot 90.5 0.15 5.2E-06 50.9 3.7 25 203-227 23-47 (261)
449 1ltq_A Polynucleotide kinase; 90.5 0.13 4.6E-06 52.7 3.3 22 206-227 3-24 (301)
450 2yz2_A Putative ABC transporte 90.5 0.14 4.9E-06 51.3 3.5 25 203-227 31-55 (266)
451 2ihy_A ABC transporter, ATP-bi 90.5 0.13 4.4E-06 52.0 3.1 25 203-227 45-69 (279)
452 3bgw_A DNAB-like replicative h 90.5 0.31 1.1E-05 52.9 6.3 70 187-261 179-248 (444)
453 3end_A Light-independent proto 90.5 0.21 7.2E-06 51.4 4.8 42 203-247 39-80 (307)
454 3p32_A Probable GTPase RV1496/ 90.4 0.22 7.6E-06 52.4 5.0 26 202-227 76-101 (355)
455 3zvl_A Bifunctional polynucleo 90.3 0.15 5.1E-06 55.0 3.6 25 203-227 256-280 (416)
456 1svm_A Large T antigen; AAA+ f 90.3 0.23 8E-06 52.4 5.0 25 203-227 167-191 (377)
457 1nlf_A Regulatory protein REPA 90.3 0.13 4.6E-06 52.1 3.1 24 204-227 29-52 (279)
458 2j9r_A Thymidine kinase; TK1, 90.3 0.48 1.7E-05 45.2 6.7 110 204-321 27-139 (214)
459 2f9l_A RAB11B, member RAS onco 90.2 0.15 5.1E-06 48.6 3.2 23 206-228 6-28 (199)
460 1yrb_A ATP(GTP)binding protein 90.2 0.17 5.9E-06 50.6 3.8 24 204-227 13-36 (262)
461 3k1j_A LON protease, ATP-depen 90.2 0.18 6E-06 57.5 4.2 42 183-227 41-82 (604)
462 2vp4_A Deoxynucleoside kinase; 90.1 0.14 4.9E-06 50.1 3.0 25 203-227 18-42 (230)
463 3llm_A ATP-dependent RNA helic 90.1 0.87 3E-05 44.5 8.7 31 193-226 67-97 (235)
464 1ls1_A Signal recognition part 89.8 0.18 6.1E-06 51.5 3.5 39 204-245 97-135 (295)
465 2lkc_A Translation initiation 89.8 0.26 8.9E-06 45.6 4.4 25 204-228 7-31 (178)
466 2wjg_A FEOB, ferrous iron tran 89.7 0.19 6.5E-06 47.2 3.4 23 206-228 8-30 (188)
467 2qe7_A ATP synthase subunit al 89.7 0.81 2.8E-05 49.5 8.6 100 194-297 151-265 (502)
468 3zq6_A Putative arsenical pump 89.7 0.26 8.9E-06 51.1 4.7 52 198-252 6-58 (324)
469 4dzz_A Plasmid partitioning pr 89.7 0.5 1.7E-05 45.0 6.5 43 206-251 2-45 (206)
470 3eph_A TRNA isopentenyltransfe 89.6 0.17 5.9E-06 53.4 3.2 22 206-227 3-24 (409)
471 3sop_A Neuronal-specific septi 89.6 0.17 5.8E-06 50.9 3.1 21 207-227 4-24 (270)
472 3nh6_A ATP-binding cassette SU 89.6 0.15 5.2E-06 52.1 2.8 25 203-227 78-102 (306)
473 1q3t_A Cytidylate kinase; nucl 89.6 0.2 6.7E-06 49.3 3.6 25 203-227 14-38 (236)
474 2ce2_X GTPase HRAS; signaling 89.6 0.17 5.9E-06 46.0 3.0 22 207-228 5-26 (166)
475 3oaa_A ATP synthase subunit al 89.6 1 3.5E-05 48.5 9.2 99 194-297 151-265 (513)
476 2pjz_A Hypothetical protein ST 89.5 0.17 6E-06 50.5 3.1 23 205-227 30-52 (263)
477 1z2a_A RAS-related protein RAB 89.4 0.19 6.5E-06 46.0 3.1 23 206-228 6-28 (168)
478 3io3_A DEHA2D07832P; chaperone 89.4 0.4 1.4E-05 50.1 5.8 48 202-251 15-63 (348)
479 1f6b_A SAR1; gtpases, N-termin 89.3 0.28 9.7E-06 46.6 4.3 24 204-227 24-47 (198)
480 2nzj_A GTP-binding protein REM 89.2 0.19 6.4E-06 46.4 3.0 23 206-228 5-27 (175)
481 3v9p_A DTMP kinase, thymidylat 89.2 0.29 1E-05 47.6 4.3 24 204-227 24-47 (227)
482 2bbs_A Cystic fibrosis transme 89.1 0.21 7.1E-06 50.7 3.4 25 203-227 62-86 (290)
483 1q57_A DNA primase/helicase; d 89.1 0.54 1.9E-05 52.1 7.1 66 193-262 230-295 (503)
484 1z08_A RAS-related protein RAB 89.1 0.24 8.3E-06 45.4 3.6 23 206-228 7-29 (170)
485 2j37_W Signal recognition part 89.1 0.3 1E-05 53.6 4.8 25 203-227 99-123 (504)
486 2ocp_A DGK, deoxyguanosine kin 89.1 0.22 7.6E-06 49.1 3.5 23 205-227 2-24 (241)
487 3rfe_A Platelet glycoprotein I 89.1 0.53 1.8E-05 41.2 5.6 52 696-751 12-66 (130)
488 3con_A GTPase NRAS; structural 89.0 0.2 7E-06 47.1 3.1 22 207-228 23-44 (190)
489 3kta_A Chromosome segregation 88.9 0.21 7.3E-06 46.7 3.1 21 206-226 27-47 (182)
490 3gqb_B V-type ATP synthase bet 88.9 0.29 1E-05 52.2 4.4 66 194-259 136-210 (464)
491 1u8z_A RAS-related protein RAL 88.8 0.22 7.5E-06 45.5 3.1 23 206-228 5-27 (168)
492 1cp2_A CP2, nitrogenase iron p 88.8 0.36 1.2E-05 48.5 4.9 38 206-246 2-39 (269)
493 2afh_E Nitrogenase iron protei 88.7 0.35 1.2E-05 49.2 4.8 40 205-247 2-41 (289)
494 3q72_A GTP-binding protein RAD 88.7 0.2 6.7E-06 45.8 2.7 21 207-227 4-24 (166)
495 3vr4_D V-type sodium ATPase su 88.7 0.28 9.7E-06 52.4 4.1 66 194-259 140-207 (465)
496 2ged_A SR-beta, signal recogni 88.7 0.27 9.2E-06 46.4 3.7 25 204-228 47-71 (193)
497 1c1y_A RAS-related protein RAP 88.5 0.24 8.1E-06 45.3 3.1 22 207-228 5-26 (167)
498 1ek0_A Protein (GTP-binding pr 88.5 0.24 8.1E-06 45.4 3.1 23 207-229 5-27 (170)
499 1z0j_A RAB-22, RAS-related pro 88.5 0.24 8.1E-06 45.4 3.1 22 207-228 8-29 (170)
500 2erx_A GTP-binding protein DI- 88.5 0.29 9.9E-06 44.9 3.7 22 207-228 5-26 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-44 Score=412.86 Aligned_cols=307 Identities=17% Similarity=0.170 Sum_probs=237.1
Q ss_pred cccccchhhHHHHHHhhcC--CCceEEEEEcCCCCcHHHHHHHHhh--ccccccccCCeEEEEEeCCCC--CHHHHHHHH
Q 003330 184 MGIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCR--DHQVTSYFNNRILFLTVSQSP--NVEQLRAKV 257 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~~wv~v~~~~--~~~~l~~~i 257 (829)
..|||+.++++|.++|... +.+++|+|+||||+||||||+++|+ |.+++.+|+. ++|+++++.+ +...++..|
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCc-EEEEEECCCCCCCHHHHHHHH
Confidence 3369999999999999643 4689999999999999999999998 6889999985 5599999885 889999999
Q ss_pred HHhhcCCCCC-CCCC--C--cch-hhHHHHhhcCC-cEEEEEcCCCChHhHHHhhhcCCCceEEEEeeccccc-c---cc
Q 003330 258 WGFVSGCDSM-EPNY--V--IPH-WNLQIQSKLGS-RCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST-V---LN 326 (829)
Q Consensus 258 ~~~l~~~~~~-~~~~--~--~~~-~~~~~~~~~~~-~~LlVlDdv~~~~~~~~l~~~~~gs~iivTtR~~~~~-~---~~ 326 (829)
+.+++..... ...+ . ... .....+.+.++ ||||||||||+.+++ .+ +..+||+||||||++.++ . ..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~-~~~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW-AQELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH-HHHTTCEEEEEESBGGGGGGCCSCE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc-cccCCCEEEEEcCCHHHHHHcCCCC
Confidence 9999765321 1111 1 111 23344456775 999999999998876 22 234899999999999887 2 33
Q ss_pred ceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCCcc
Q 003330 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICE 406 (829)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~ 406 (829)
.+|+|++|++++||+||.+++|+... ....++++++|+++|+|+||||+++|+.++.+. |+.+ ..+..... .
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~--~ 357 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE--S 357 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH--H
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh--c
Confidence 57999999999999999999987542 345667999999999999999999999998773 4333 22221100 0
Q ss_pred ccchhHHHHHHHhhcCCChhHHHHHH-----------hhCCCCCCCccCHHHHHHHHHHh--cCCC--------HHHHHH
Q 003330 407 SHENNLLDRMAISIQYLPKKVKECFL-----------DLGSFPEDKKIPLEVLINMWVEI--HDLD--------EEEAFA 465 (829)
Q Consensus 407 ~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~fp~~~~i~~~~l~~~w~a~--~~~~--------~~~~~~ 465 (829)
....++..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ |++. ++.+.
T Consensus 358 ~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 358 RGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp HCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred ccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 01345777889999999999999999 999999999998 7899999 6553 34444
Q ss_pred HHHHHhhcchhhhhhhcccCccccccccccchhhHHHHHHHHHhhccCCc
Q 003330 466 ILVELSDRNLLKIVKDARAGDMYSSYYEISVTQHDVLRDLALHLSNQENI 515 (829)
Q Consensus 466 ~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~~~ 515 (829)
++++|+++||++....+ .. ..|.|||+||++|++++.++++
T Consensus 433 ~l~~L~~rsLl~~~~~~---~~------~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM---PV------LTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECS---SS------CEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHcCCeeEecCC---Cc------eEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999876432 11 2589999999999999877655
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-39 Score=371.67 Aligned_cols=285 Identities=21% Similarity=0.305 Sum_probs=226.9
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
+..|||+.++++|.++|...++.++|+|+||||+||||||+++|++.+++.+|+.+++|+++++.++...++..++..+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 45599999999999999865678999999999999999999999988899999988899999999998888887776543
Q ss_pred CCC---CCCCC---C---Ccchhh----HHHHhhcCCcEEEEEcCCCChHhHHHhhhcCCCceEEEEeeccccc---ccc
Q 003330 263 GCD---SMEPN---Y---VIPHWN----LQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST---VLN 326 (829)
Q Consensus 263 ~~~---~~~~~---~---~~~~~~----~~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~gs~iivTtR~~~~~---~~~ 326 (829)
... ..... . ..+... ..++...++|+||||||||+.++|+.+. +||+||||||++.++ ...
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcCCC
Confidence 211 00000 0 011111 1122236899999999999999998874 899999999999876 233
Q ss_pred ceEEcc------CCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCC--ChhHHHHHHHHh
Q 003330 327 DTYEVE------LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQ--PEMYWTSAKKRL 398 (829)
Q Consensus 327 ~~~~l~------~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~--~~~~w~~~l~~l 398 (829)
..|+++ .|+.+||++||+... +.. ..++..++ |+|+||||+++|+.|+++ ...+|...
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHc-CCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 467777 899999999999884 322 12244444 999999999999999987 56778652
Q ss_pred ccCCCCccccchhHHHHHHHhhcCCChhH-HHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhh
Q 003330 399 SKGEPICESHENNLLDRMAISIQYLPKKV-KECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLK 477 (829)
Q Consensus 399 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~ 477 (829)
....+..+++.||+.||+++ |.||+|||+||+++.|+.+.++.+|++++ ++.+..+|++|+++||++
T Consensus 351 ---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---eedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 ---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp ---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---SHHHHHHHHHHHTSSSSS
T ss_pred ---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---HHHHHHHHHHHHhhCCEE
Confidence 14679999999999999999 99999999999999999999999998765 356889999999999998
Q ss_pred hhhhcccCccccccccccchhhHHHHHHHH
Q 003330 478 IVKDARAGDMYSSYYEISVTQHDVLRDLAL 507 (829)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~ 507 (829)
.... . ..|+|||++++++.
T Consensus 419 ~d~~-----~------~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 419 KQPK-----E------STISIPSIYLELKV 437 (1221)
T ss_dssp BCSS-----S------SEEBCCCHHHHHHH
T ss_pred EeCC-----C------CEEEehHHHHHHhc
Confidence 6311 1 25899999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-36 Score=384.18 Aligned_cols=313 Identities=24% Similarity=0.362 Sum_probs=246.1
Q ss_pred CCcccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccc-ccccCCeEEEEEeCCCCC--HHHHHH
Q 003330 180 LGNLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV-TSYFNNRILFLTVSQSPN--VEQLRA 255 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~~wv~v~~~~~--~~~l~~ 255 (829)
..+..+|||+.++++|.++|... +.+++|+|+||||+||||||+++|++.++ ..+|...++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999643 67899999999999999999999976543 667888899999998544 334466
Q ss_pred HHHHhhcCCCCCCC--CCCcchhhHHH-Hhhc--CCcEEEEEcCCCChHhHHHhhhcCCCceEEEEeeccccc----ccc
Q 003330 256 KVWGFVSGCDSMEP--NYVIPHWNLQI-QSKL--GSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST----VLN 326 (829)
Q Consensus 256 ~i~~~l~~~~~~~~--~~~~~~~~~~~-~~~~--~~~~LlVlDdv~~~~~~~~l~~~~~gs~iivTtR~~~~~----~~~ 326 (829)
.++..+........ ....+.....+ ..+. ++|+||||||||+.++|+.+ .+||+||||||++.++ ...
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---CSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---cCCCEEEEEcCCHHHHHhhcCCc
Confidence 67777654432111 11222222222 2334 45999999999999888876 6799999999999876 345
Q ss_pred ceEEccC-CCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCCc
Q 003330 327 DTYEVEL-LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPIC 405 (829)
Q Consensus 327 ~~~~l~~-L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~ 405 (829)
..++++. |+++|+++||...++... ...++++++|+++|+|+||||+++|++|+.++ ..|..+++.+.......
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 7899996 999999999999885432 22345799999999999999999999999876 57999999987654211
Q ss_pred -----cccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhhhhh
Q 003330 406 -----ESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 406 -----~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~~~ 480 (829)
......+..++.+||+.||+++|.||+|||+||+++.|+.+.++.+|. ..++.+..++++|+++||++...
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~----~~~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWD----LETEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHT----CCHHHHHHHHHHHHHTTSCEEEE
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhC----CCHHHHHHHHHHHHhccceEEec
Confidence 111356999999999999999999999999999999999999999994 34678999999999999998543
Q ss_pred hcccCccccccccccchhhHHHHHHHHHhhccC
Q 003330 481 DARAGDMYSSYYEISVTQHDVLRDLALHLSNQE 513 (829)
Q Consensus 481 ~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~ 513 (829)
+ +... +|+|||++|+++++.+.++
T Consensus 429 ~---~~~~------~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 N---GKSF------CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp S---SSSE------EEECCHHHHHHHHHHTGGG
T ss_pred C---CCce------EEEecHHHHHHHHhhhhHH
Confidence 2 2222 5899999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=334.90 Aligned_cols=310 Identities=25% Similarity=0.366 Sum_probs=234.1
Q ss_pred CCcccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccc-ccccCCeEEEEEeCCCCCHHHHHHHH
Q 003330 180 LGNLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV-TSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..+..+|||+.+++++.++|... ++.++|+|+||||+||||||+++|++..+ ..+|+..++|++++.. +...+...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34567899999999999999743 56899999999999999999999987655 7889877889999876 333343333
Q ss_pred ---HHhhcCCCCC--CCCCCcchhh-HHHHhh--cCCcEEEEEcCCCChHhHHHhhhcCCCceEEEEeeccccc--cccc
Q 003330 258 ---WGFVSGCDSM--EPNYVIPHWN-LQIQSK--LGSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST--VLND 327 (829)
Q Consensus 258 ---~~~l~~~~~~--~~~~~~~~~~-~~~~~~--~~~~~LlVlDdv~~~~~~~~l~~~~~gs~iivTtR~~~~~--~~~~ 327 (829)
...+...... .......... .....+ ..+++||||||||+.++++.+ .+|++||||||+..++ ....
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---~~~~~ilvTsR~~~~~~~~~~~ 276 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---DSQCQILLTTRDKSVTDSVMGP 276 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---CSSCEEEEEESCGGGGTTCCSC
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---cCCCeEEEECCCcHHHHhcCCC
Confidence 3344321111 1111112222 222223 237999999999998877765 5799999999999876 2345
Q ss_pred eEEcc---CCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCC
Q 003330 328 TYEVE---LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPI 404 (829)
Q Consensus 328 ~~~l~---~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~ 404 (829)
.+++. +|+.+|+++||...++... ...++.+.+|+++|+|+||||+++|++++.+. ..|..+++.+......
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFK 351 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCC
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHH
Confidence 66664 8999999999999986421 12234789999999999999999999998764 3799999888754311
Q ss_pred -----ccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhhhh
Q 003330 405 -----CESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIV 479 (829)
Q Consensus 405 -----~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~~ 479 (829)
.......+..++..||+.||++.|.||+++|+||+++.|+.+.+..+|. ...+.+..++++|+++||++..
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~----~~~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWD----METEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHT----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhc----cCHHHHHHHHHHHHhCcCeEEe
Confidence 1112357899999999999999999999999999999999999999884 3456788999999999999854
Q ss_pred hhcccCccccccccccchhhHHHHHHHHHhhc
Q 003330 480 KDARAGDMYSSYYEISVTQHDVLRDLALHLSN 511 (829)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~ 511 (829)
.++ .. ..|.||+++|++++....
T Consensus 428 ~~~---~~------~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 428 RNG---KS------FRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EET---TE------EEEECCHHHHHHHHHHTG
T ss_pred cCC---Cc------cEEEEcHHHHHHHHhhhh
Confidence 321 11 158999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.3e-23 Score=221.03 Aligned_cols=227 Identities=25% Similarity=0.354 Sum_probs=197.5
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
.++++.|.|..+. ...+|..+.++++|++|++.+|.... ....++++++|++|++++|.++.+|..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~----lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLME----LPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCC----CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccc----hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 3566666666554 45889889999999999999987652 22457889999999999999999999999999999
Q ss_pred eEEeeeccccccccccccc-----cCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCC
Q 003330 644 KISFVLCKINNSLDQSVVD-----LPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSL 718 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 718 (829)
+|++++|.....++..+.. .+..+++|++|++++|. +..+|..++++++|++|++++|. +..+|..++.+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCC
Confidence 9999999877665544321 12348999999999985 55899999999999999999987 55788889999999
Q ss_pred CEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003330 719 QILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 719 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
++|++++|+..+.+|..++.+++|++|++++|+.+..+|..+..+++|++|+|++|+.++.+|..+.++++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.3e-21 Score=207.49 Aligned_cols=245 Identities=18% Similarity=0.200 Sum_probs=141.4
Q ss_pred cceEEEeeeCCccc---cccccccCCceEEEEEec-cCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccc
Q 003330 543 NAQIVSIHTGDMRE---MDWFRMEFPKAEVLILNF-SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTN 618 (829)
Q Consensus 543 ~~~~lsi~~~~~~~---~~~~~~~~~~l~~l~L~~-~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 618 (829)
.++.+.+....+.. .+..-..+++|+.|.|.. +.. ...+|..|.++++|++|++.+|...... ...+.++++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITHTNVSGAI---PDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGGGGCTTCSEEEEEEECCEEEC---CGGGGGCTT
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhHhcCCCCCEEECcCCeeCCcC---CHHHhCCCC
Confidence 34555555444432 222223456666666653 322 3355666666666666666666543221 123556666
Q ss_pred cceeeecccccC-CCCCCccccCCCceEEeeeccccccccccccccCCccc-cccccccccccccccCCccccCcCCCcE
Q 003330 619 LRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP-CLTELTFDHCDDLMKLPPSICGLQSLKN 696 (829)
Q Consensus 619 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 696 (829)
|++|++++|.+. .+|..+..+++|++|++++|.+....+..+ ..++ +|+.|++++|...+.+|..+..++ |+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 666666666666 455566666666666666665543333222 2344 666666666655556666666665 666
Q ss_pred EEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecccccc
Q 003330 697 LSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 697 L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
|++++|......|..+..+++|+.|++++|.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 66666665555566666666666666666554433333 55666666666666655445666666666666666666665
Q ss_pred CccCCcccccccccCceeccch
Q 003330 777 IWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 777 ~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
.+.+|.. ..+++|+.+++.+|
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSS
T ss_pred cccCCCC-ccccccChHHhcCC
Confidence 5566654 56666666666555
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=4e-22 Score=211.30 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=192.7
Q ss_pred CceEEEEEeccCCCcc--ccChhhhcCCCCceEEEcc-ccCCccccCCCcccCCccccceeeecccccC-CCCCCccccC
Q 003330 565 PKAEVLILNFSSTEEY--FLPPFIENMEKLRALIVIN-YSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLK 640 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~--~lp~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~ 640 (829)
.+++.|.|..+.. .. .+|..|.++++|++|++.+ +..... ....+.++++|++|++++|.+. .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l-~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGP---IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCC-SSCEECCGGGGGCTTCSEEEEEEETTEESC---CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCc-cCCcccChhHhCCCCCCeeeCCCCCccccc---CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 4677777776654 23 6899999999999999984 544322 2345789999999999999998 7888899999
Q ss_pred CCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC-CCcEEEeccccccccchhhccCCCCCC
Q 003330 641 KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ-SLKNLSVTNCHSLQELPADIGKMKSLQ 719 (829)
Q Consensus 641 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~ 719 (829)
+|++|++++|.+....+.. ...+++|++|++++|...+.+|..++.++ +|++|++++|.....+|..+..++ |+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp TCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 9999999999887554443 35689999999999977778999999998 999999999987778899998887 99
Q ss_pred EEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 720 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 720 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
.|++++|......|..+..+++|+.|++++|.....+| .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99999988877888899999999999999976554444 48899999999999999777999999999999999998885
Q ss_pred hh
Q 003330 800 SW 801 (829)
Q Consensus 800 ~~ 801 (829)
..
T Consensus 280 l~ 281 (313)
T 1ogq_A 280 LC 281 (313)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.3e-21 Score=205.53 Aligned_cols=221 Identities=20% Similarity=0.351 Sum_probs=190.4
Q ss_pred cCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCcc
Q 003330 588 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 667 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 667 (829)
...+++.|++.++..... ...+.++++|++|++++|.+..+|..+..+++|++|++++|.+. .++. ....+
T Consensus 79 ~~~~l~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF----PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPA----SIASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSC----CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCG----GGGGC
T ss_pred cccceeEEEccCCCchhc----ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcH----HHhcC
Confidence 357899999999876522 23467799999999999999999999999999999999999876 3333 34568
Q ss_pred ccccccccccccccccCCccccC---------cCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccC
Q 003330 668 PCLTELTFDHCDDLMKLPPSICG---------LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICE 738 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~ 738 (829)
++|++|++++|...+.+|..++. +++|++|++++|. +..+|..++++++|++|++++|.. ..+|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL-SALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC-CcCchhhcc
Confidence 99999999999999999987765 9999999999986 558999999999999999999764 468888999
Q ss_pred CCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhh-hhhhhhhCCCceEEe
Q 003330 739 LVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWA-WKDLEKTLPNLHVQV 817 (829)
Q Consensus 739 l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~-~~~l~~~lp~L~~~~ 817 (829)
+++|++|++++|+....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.... .+...+.+|++++..
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999999999999999999999999999999999999999999999999999999999864433 455566888888765
Q ss_pred cc
Q 003330 818 PA 819 (829)
Q Consensus 818 ~~ 819 (829)
..
T Consensus 308 l~ 309 (328)
T 4fcg_A 308 VP 309 (328)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=6.3e-21 Score=227.69 Aligned_cols=230 Identities=17% Similarity=0.181 Sum_probs=180.2
Q ss_pred ccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccC-CCCCCccccC
Q 003330 562 MEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLK 640 (829)
Q Consensus 562 ~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~ 640 (829)
..+++|+.|.|..+.. ...+|..+.++++|+.|++.+|...... ...+..+++|++|++++|.+. .+|..+..++
T Consensus 415 ~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGCTTCCEEECCSSEE-ESCCCGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hcCCCCCEEECcCCcc-cCcccHHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 3567777777766543 3466777888888888888777654322 234667788888888888887 5677788888
Q ss_pred CCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhh---------
Q 003330 641 KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPAD--------- 711 (829)
Q Consensus 641 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--------- 711 (829)
+|++|++++|.+....+.. ...+++|++|++++|...+.+|..++.+++|+.|++++|.....+|..
T Consensus 491 ~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp TCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CCCEEEccCCccCCcCChH----HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 8888888888776544433 355788888999888777788888888899999998888765555543
Q ss_pred -------------------------------------------------------------ccCCCCCCEEecccCCcCC
Q 003330 712 -------------------------------------------------------------IGKMKSLQILRLYACPHLR 730 (829)
Q Consensus 712 -------------------------------------------------------------l~~l~~L~~L~l~~~~~l~ 730 (829)
++.+++|+.|++++|...+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 3345778889999988888
Q ss_pred cccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 731 TLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 731 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 899999999999999999987777889899999999999999999888899999999999999987764
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.5e-20 Score=224.53 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=208.2
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccC-CCCCCccccCCC
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKM 642 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L 642 (829)
+++++.|.+..+.. ...+|..+.++++|++|++.+|..... ....+.++++|++|++++|.+. .+|..+..+++|
T Consensus 393 ~~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGT---IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEE-EEECCGGGGGCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCcc-ccccCHHHhcCCCCCEEECcCCcccCc---ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 57788888776654 447888999999999999998865432 2345788999999999999998 688889999999
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEe
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 722 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 722 (829)
++|++++|.+....+.. ...+++|+.|++++|...+.+|..++.+++|++|++++|.....+|..++.+++|+.|+
T Consensus 469 ~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred eEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 99999999887655444 35689999999999988789999999999999999999998889999999999999999
Q ss_pred cccCCcCCccccc-------------------------------------------------------------------
Q 003330 723 LYACPHLRTLPAR------------------------------------------------------------------- 735 (829)
Q Consensus 723 l~~~~~l~~lp~~------------------------------------------------------------------- 735 (829)
+++|...+.+|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 9998776666543
Q ss_pred ---ccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhh-hhhhhhhCC
Q 003330 736 ---ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWA-WKDLEKTLP 811 (829)
Q Consensus 736 ---~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~-~~~l~~~lp 811 (829)
++.+++|+.|++++|.....+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.... .+...+.++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 3345789999999998888999999999999999999999888999999999999999999885542 344445677
Q ss_pred CceEEeccc
Q 003330 812 NLHVQVPAK 820 (829)
Q Consensus 812 ~L~~~~~~~ 820 (829)
+|+......
T Consensus 705 ~L~~L~ls~ 713 (768)
T 3rgz_A 705 MLTEIDLSN 713 (768)
T ss_dssp CCSEEECCS
T ss_pred CCCEEECcC
Confidence 776655443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=8.4e-20 Score=204.89 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=133.9
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCC-CCC-ccccCC
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL-PKS-SIPLKK 641 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~ 641 (829)
+++|+.|.|..+.. ....|..|.++++|++|++.+|......... ..+.++++|++|++++|.+..+ |.. +..+++
T Consensus 78 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 78 LSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp CTTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 45555555544433 2233555666666666666665543211110 2256677788888888877766 333 667788
Q ss_pred CceEEeeecccccccccccccc------------------------------CCccccccccccccccccccCCcccc--
Q 003330 642 MQKISFVLCKINNSLDQSVVDL------------------------------PKTLPCLTELTFDHCDDLMKLPPSIC-- 689 (829)
Q Consensus 642 L~~L~L~~~~~~~~~~~~~~~~------------------------------~~~~~~L~~L~L~~~~~~~~lp~~i~-- 689 (829)
|++|++++|.+....+..+... ...+++|+.|++++|......|..+.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 8888888777654433222111 01234566666666533221111110
Q ss_pred -------------------------------------CcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcc
Q 003330 690 -------------------------------------GLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTL 732 (829)
Q Consensus 690 -------------------------------------~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~l 732 (829)
..++|+.|++++|......|..++.+++|++|++++|......
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 1134555555555444444555666666666666665544444
Q ss_pred cccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhh-hhhhCC
Q 003330 733 PARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKD-LEKTLP 811 (829)
Q Consensus 733 p~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~-l~~~lp 811 (829)
|..+..+++|++|++++|......|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|....... ....+|
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 5556666666666666654333334455666666666666666444445556666666666666554333222 223455
Q ss_pred CceEEe
Q 003330 812 NLHVQV 817 (829)
Q Consensus 812 ~L~~~~ 817 (829)
+|+...
T Consensus 396 ~L~~L~ 401 (455)
T 3v47_A 396 SLQKIW 401 (455)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 555443
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=202.01 Aligned_cols=268 Identities=20% Similarity=0.238 Sum_probs=152.9
Q ss_pred CCcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccc
Q 003330 541 PFNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNL 619 (829)
Q Consensus 541 ~~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 619 (829)
+...+.+.+....+..... .-..+++|+.|.|..+.. ....|..|.++++|++|++.+|....... ..+.++++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCTTC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCc---ccccCCCCC
Confidence 3456777777666655432 223567788877766543 33446778888888888887776443221 235667777
Q ss_pred ceeeecccccCCCC-CCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEE
Q 003330 620 RSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNL 697 (829)
Q Consensus 620 ~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L 697 (829)
++|++++|.+..++ ..+..+++|++|++++|.+....+. .+..+++|+.|++++|. +..+| ..+.++++|+.|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT----SSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChh----hccCCCCCCEEECCCCc-CcccChhHhcccCCCcEE
Confidence 77777777777543 3466677777777777665432222 22345556666666553 22232 234455555555
Q ss_pred Eeccc------------------------cccccchhhccCCCCCCEEecccCCcCCccc-ccccCCCCCCEEeccCCcC
Q 003330 698 SVTNC------------------------HSLQELPADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVS 752 (829)
Q Consensus 698 ~l~~~------------------------~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 752 (829)
++++| .....+|..+....+|+.|++++|. +..+| ..+..+++|+.|+|++|..
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcC
Confidence 55554 4444444333333445555555433 22333 3456667777777776543
Q ss_pred CCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhh-hhhhCCCceEEec
Q 003330 753 LSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVP 818 (829)
Q Consensus 753 l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~-l~~~lp~L~~~~~ 818 (829)
....+..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|....... ....+|+|+....
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 33333346677777777777777555556667777777777777764443322 2234556655443
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.7e-19 Score=199.10 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=181.2
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCc
Q 003330 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQ 643 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 643 (829)
++++.|.|..+.. ....|..|.++++|++|++.+|....... ..+.++++|++|+|++|.++.+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 5677777766543 33446779999999999999987654432 3577899999999999999988876 77899999
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCc-cccCcCCCcEEEeccccccccchhhccCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 722 (829)
+|+|++|.+..... ..+..+++|+.|++++|..+..+|. .+.++++|++|++++|. +..+| .+..+++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPS----YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECT----TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEE
T ss_pred EEECCCCCcceeCH----hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEE
Confidence 99999988764322 2346689999999999888887775 58899999999999986 55666 588999999999
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCC-cccccccccCceeccchh
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~ 799 (829)
+++|......|..+..+++|+.|++++|......|..+..+++|+.|+|++|.+ ..+| ..+..+++|+.|++.+|.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC-CccChHHhccccCCCEEEccCCC
Confidence 999887777788899999999999999866555567789999999999999984 5555 456789999999987764
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=5.1e-19 Score=194.03 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=49.7
Q ss_pred hccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCccccccccc
Q 003330 711 DIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSL 790 (829)
Q Consensus 711 ~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 790 (829)
.+..+++|++|++++|......|..+..+++|++|++++| .+..+|..+..+++|++|++++|. +..+|..+..+++|
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 320 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcC
Confidence 4555566666666665544444555556666666666654 334455555556666666666665 44555555555666
Q ss_pred Cceeccchhh
Q 003330 791 RQVICEEDVS 800 (829)
Q Consensus 791 ~~L~~~~~~~ 800 (829)
+.|++++|..
T Consensus 321 ~~L~L~~N~i 330 (390)
T 3o6n_A 321 ENLYLDHNSI 330 (390)
T ss_dssp SEEECCSSCC
T ss_pred CEEECCCCcc
Confidence 6666555543
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-19 Score=191.10 Aligned_cols=230 Identities=18% Similarity=0.164 Sum_probs=181.3
Q ss_pred CceEEEEEeccCCCccccCh-hhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 565 PKAEVLILNFSSTEEYFLPP-FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
++++.|.|..+. ...+|. .|.++++|++|++.+|....... ....+..+++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccC-cccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 567777766554 446665 47899999999999886543210 01234468899999999999999998899999999
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccc-cchhhccCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ-ELPADIGKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~ 722 (829)
+|++++|.+..... ......+++|++|++++|......|..+..+++|++|++++|.... .+|..+..+++|++|+
T Consensus 105 ~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 105 HLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp EEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred EEECCCCccccccc---chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 99999988764332 1233568999999999997666777788999999999999987654 4788899999999999
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCccccccc-ccCceeccchhh
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLK-SLRQVICEEDVS 800 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~~~~~~~ 800 (829)
+++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|..
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999876666678889999999999999765444444688899999999999997777788888884 899999887743
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=2.5e-19 Score=201.06 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=198.8
Q ss_pred CCcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccc
Q 003330 541 PFNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNL 619 (829)
Q Consensus 541 ~~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 619 (829)
+...+++.++...+..... .-..+++|+.|.|..+.......|..|.++++|++|++.+|...... ...+.++++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE---TGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC---TTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC---hhhccCcccC
Confidence 4567888887776655422 22457888888887765533344667889999999999888765432 2346788899
Q ss_pred ceeeecccccCC-CCCC--ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCc-----
Q 003330 620 RSLWLEKVSISQ-LPKS--SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL----- 691 (829)
Q Consensus 620 ~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l----- 691 (829)
++|++++|.++. +|.. +..+++|++|++++|.+....+.. ....+++|++|++++|......|..+..+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 999999998875 3333 778899999999988876543332 13568899999999986555555544433
Q ss_pred -----------------------------CCCcEEEeccccccccchhhcc-----------------------------
Q 003330 692 -----------------------------QSLKNLSVTNCHSLQELPADIG----------------------------- 713 (829)
Q Consensus 692 -----------------------------~~L~~L~l~~~~~~~~lp~~l~----------------------------- 713 (829)
++|++|++++|......|..+.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 6788888888765444443321
Q ss_pred ----------CCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcc
Q 003330 714 ----------KMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 783 (829)
Q Consensus 714 ----------~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 783 (829)
..++|+.|++++|......|..++.+++|++|++++|......|..+..+++|++|++++|.+.+..|..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 1257888888887777777888999999999999998665555778899999999999999965556778
Q ss_pred cccccccCceeccchhhhhh-hhhhhhCCCceEEecccc
Q 003330 784 VNSLKSLRQVICEEDVSWAW-KDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 784 l~~l~~L~~L~~~~~~~~~~-~~l~~~lp~L~~~~~~~~ 821 (829)
+..+++|+.|++++|..... +.....+|+|+.....++
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 88999999999998865544 333456788877665543
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=197.98 Aligned_cols=225 Identities=17% Similarity=0.223 Sum_probs=177.5
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCc
Q 003330 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQ 643 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 643 (829)
++++.|.|..+.. ....+..|.++++|++|++.+|....... ..|.++++|++|+|++|.++.+|.. +..+++|+
T Consensus 64 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEECG---GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccCh---hhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 5677776665543 23345779999999999999887654332 3577889999999999999988874 88899999
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCc-cccCcCCCcEEEeccccccccchhhccCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 722 (829)
+|+|++|.+..... ..+..+++|+.|++++|..+..+|. .+.++++|++|++++|. +..+| .+..+++|+.|+
T Consensus 140 ~L~L~~N~i~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNNPIESIPS----YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELD 213 (440)
T ss_dssp EEECCSCCCCEECT----TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEE
T ss_pred eeeCCCCcccccCH----HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEE
Confidence 99999988664322 2345689999999999888877765 58899999999999985 56777 588999999999
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
+++|......|..+..+++|+.|++++|......|..+..+++|+.|+|++|.+....+..+..+++|+.|++.+|.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 99987666667889999999999999976555556678899999999999998444344556788999999877664
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4.4e-19 Score=205.52 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=47.0
Q ss_pred hccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCccccccccc
Q 003330 711 DIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSL 790 (829)
Q Consensus 711 ~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 790 (829)
.++.+++|+.|++++|......|..++.+++|+.|+|++| .+..+|..+..+++|+.|+|++|. +..+|..+..+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCC
Confidence 4455555555555555544444555555555555555553 333445545555555555555555 34555555555555
Q ss_pred Cceeccchh
Q 003330 791 RQVICEEDV 799 (829)
Q Consensus 791 ~~L~~~~~~ 799 (829)
+.|++++|.
T Consensus 327 ~~L~L~~N~ 335 (597)
T 3oja_B 327 ENLYLDHNS 335 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEECCCCC
Confidence 555555553
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.5e-19 Score=203.31 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=176.5
Q ss_pred cCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKM 642 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 642 (829)
.+++++.|.|..+.. ....|..|.++++|++|++++|...... .+..+++|++|++++|.++.+|.. ++|
T Consensus 32 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp TGGGCCEEECCSSCC-CCCCGGGGTTCTTCCEEECTTSCCEEEE-----ECTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred cCCCccEEEeeCCcC-CCCCHHHHhCCCCCCEEEeeCCCCCCCc-----ccccCCCCCEEEecCCcCCCCCCC----CCc
Confidence 345788887776654 3344567999999999999988765432 277889999999999998877643 889
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhcc-CCCCCCEE
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQIL 721 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L 721 (829)
++|++++|.+..... ..+++|+.|++++|...+..|..++.+++|++|++++|......|..+. .+++|+.|
T Consensus 102 ~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 102 ETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 999999988765332 2368899999999876666677888999999999999887666777775 78999999
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003330 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
++++|.. ..+|. ...+++|++|+|++| .+..+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|...
T Consensus 175 ~Ls~N~l-~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 175 NLQYNFI-YDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCC-CEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCCcc-ccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 9999764 44444 346899999999986 456777778899999999999998 5678888888999999998887554
Q ss_pred --hhhhhhhhCCCc
Q 003330 802 --AWKDLEKTLPNL 813 (829)
Q Consensus 802 --~~~~l~~~lp~L 813 (829)
..+.....+|++
T Consensus 251 c~~~~~~~~~l~~L 264 (487)
T 3oja_A 251 CGTLRDFFSKNQRV 264 (487)
T ss_dssp HHHHHHHHTTCHHH
T ss_pred CcchHHHHHhCCCC
Confidence 233333344444
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=9.5e-19 Score=203.86 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=100.2
Q ss_pred cCCccccceeeecccccCCC-CCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCc
Q 003330 613 CSNLTNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 691 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l 691 (829)
+..+++|++|++++|.+..+ |..+..+++|++|++++|.+....+. .....+++|+.|++++|......|..+.++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ---SPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC---CTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc---hhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 34445555555555554433 23344555555555555544322111 112345666666666665444445556666
Q ss_pred CCCcEEEecccccccc---chhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccE
Q 003330 692 QSLKNLSVTNCHSLQE---LPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEK 768 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~---lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 768 (829)
++|++|++++|..... .+..+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++| .
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 6666666666654331 12345566666666666665555555566666666666666665555555566666666 6
Q ss_pred eeccccccCccCCcccccccccCceeccch
Q 003330 769 IDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 769 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
|++++|.+.+..|..+..+++|+.+++++|
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 666666644444455566666666665554
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=196.91 Aligned_cols=247 Identities=18% Similarity=0.201 Sum_probs=173.7
Q ss_pred ceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 544 AQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
.+.+.+....+..++.. ...+++|+.|.|..+.. ....|..|.++++|+.|++.+|....... ..+.++++|+.|
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L 157 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQL 157 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECT---TSSTTCTTCCEE
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeCh---hhccCCCCCCEE
Confidence 44555544444333321 12345566555544433 22334556666666666666654433221 235566777777
Q ss_pred eecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecc
Q 003330 623 WLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTN 701 (829)
Q Consensus 623 ~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 701 (829)
++++|.++.+|.. +..+++|+.|++++|.+..... ..+..+++|+.|++++|..+..+|..+....+|+.|++++
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 7777777766653 5667777777777766544222 2335688999999999988888888887888999999999
Q ss_pred ccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccC
Q 003330 702 CHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 780 (829)
Q Consensus 702 ~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~l 780 (829)
|. +..+| ..+.++++|+.|++++|......+..+..+++|+.|+|++|......|..+..+++|+.|+|++|. +..+
T Consensus 234 n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 311 (477)
T 2id5_A 234 CN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTL 311 (477)
T ss_dssp SC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCC
T ss_pred Cc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Ccee
Confidence 87 45565 678999999999999987665556678999999999999986665567789999999999999998 5555
Q ss_pred C-cccccccccCceeccchhh
Q 003330 781 P-KSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 781 p-~~l~~l~~L~~L~~~~~~~ 800 (829)
| ..+..+++|+.|++.+|..
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCE
T ss_pred CHhHcCCCcccCEEEccCCCc
Confidence 5 4578899999999887753
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=6.6e-19 Score=205.21 Aligned_cols=246 Identities=17% Similarity=0.106 Sum_probs=165.9
Q ss_pred ceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceee
Q 003330 544 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 623 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 623 (829)
.+.+.+....+..++-+ .+++++.|.+..+.. .... .+..+++|++|++.+|....... ....+..+++|++|+
T Consensus 309 L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~-~~~~--~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG-SISF--KKVALPSLSYLDLSRNALSFSGC-CSYSDLGTNSLRHLD 382 (606)
T ss_dssp CSEEEEESCCCSSCCCC--CCSSCCEEEEESCSS-CEEC--CCCCCTTCCEEECCSSCEEEEEE-CCHHHHCCSCCCEEE
T ss_pred CCEEEcccccCcccccC--CCCccceeeccCCcC-ccch--hhccCCCCCEEECcCCccCCCcc-hhhhhccCCcccEeE
Confidence 44555555544444422 556666666655532 1111 34566667777766664432210 112355677778888
Q ss_pred ecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecccc
Q 003330 624 LEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCH 703 (829)
Q Consensus 624 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 703 (829)
+++|.+..+|..+..+++|++|++++|.+....+. .....+++|+.|++++|......|..++++++|++|++++|.
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 88777777777777778888888887776543321 123457788888888887666677778888888888888876
Q ss_pred ccc-cchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCc
Q 003330 704 SLQ-ELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 782 (829)
Q Consensus 704 ~~~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 782 (829)
... .+|..++.+++|+.|++++|...+..|..+..+++|++|++++|......|..+..+++|++|++++|. +..+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 555 367777888888888888877666667777888888888888876555557778888888888888887 567777
Q ss_pred cccccc-ccCceeccchh
Q 003330 783 SVNSLK-SLRQVICEEDV 799 (829)
Q Consensus 783 ~l~~l~-~L~~L~~~~~~ 799 (829)
.+..++ +|+.+++++|.
T Consensus 539 ~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CGGGSCTTCCEEECCSCC
T ss_pred hHhhhcccCcEEEccCCC
Confidence 777776 58888876664
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.4e-19 Score=210.94 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=150.9
Q ss_pred cChhhhcCCCCceEEEccccCCccccC--------------CCcccC--CccccceeeecccccC-CCCCCccccCCCce
Q 003330 582 LPPFIENMEKLRALIVINYSTSNAALG--------------NFSVCS--NLTNLRSLWLEKVSIS-QLPKSSIPLKKMQK 644 (829)
Q Consensus 582 lp~~~~~l~~Lr~L~l~~~~~~~~~~~--------------~~~~l~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 644 (829)
+|..|+++++|++|++.+|........ .+..++ ++++|++|++++|.+. .+|..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 666677777777777777665441000 123345 6777777777777654 56666777777777
Q ss_pred EEeeecc-ccc-ccccccccc--CCccccccccccccccccccCCc--cccCcCCCcEEEeccccccccchhhccCCCCC
Q 003330 645 ISFVLCK-INN-SLDQSVVDL--PKTLPCLTELTFDHCDDLMKLPP--SICGLQSLKNLSVTNCHSLQELPADIGKMKSL 718 (829)
Q Consensus 645 L~L~~~~-~~~-~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 718 (829)
|++++|. +.+ .++..+..+ ...+++|++|++++|... .+|. .++++++|++|++++|.....+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 7777765 443 233222110 112367777777777433 6776 67777777777777776554677 67777777
Q ss_pred CEEecccCCcCCcccccccCCCC-CCEEeccCCcCCCCCccccCCCc--cccEeeccccccCccCCcccc-------ccc
Q 003330 719 QILRLYACPHLRTLPARICELVC-LKYLNISQCVSLSCLPQGIGNLI--RLEKIDMRECSQIWSLPKSVN-------SLK 788 (829)
Q Consensus 719 ~~L~l~~~~~l~~lp~~~~~l~~-L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~lp~~l~-------~l~ 788 (829)
++|++++|.. ..+|..+..+++ |++|++++|. +..+|..+..++ +|+.|++++|.+.+..|..+. .++
T Consensus 356 ~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEE-EECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCcc-ccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 7777777543 367777777777 8888887765 447777666544 788888888876666776666 677
Q ss_pred ccCceeccchhhhhhhh-hhhhCCCceEEeccc
Q 003330 789 SLRQVICEEDVSWAWKD-LEKTLPNLHVQVPAK 820 (829)
Q Consensus 789 ~L~~L~~~~~~~~~~~~-l~~~lp~L~~~~~~~ 820 (829)
+|+.|++++|.....+. +...+|+|+......
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 78888877775444332 233467776665544
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=2e-18 Score=184.62 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=119.4
Q ss_pred ceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 544 AQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
.+.+.+....+...+. .-..+++|+.|.|..+.. ....|..|.++++|++|++.+|........ -.++|++|
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~~~L~~L 126 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPEK------MPKTLQEL 126 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCTTCCEE
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccChh------hcccccEE
Confidence 4444444443333322 112344555554443332 122244455555555555555443211100 01455555
Q ss_pred eecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecc
Q 003330 623 WLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTN 701 (829)
Q Consensus 623 ~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 701 (829)
++++|.+..++.. +..+++|++|++++|.+... ...+.....+++|+.|++++|. +..+|..+. ++|++|++++
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTT
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCcc--CcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCC
Confidence 5555555544433 44555555555555544320 0111122345566666666653 344554332 5666666666
Q ss_pred ccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCC
Q 003330 702 CHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 702 ~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
|......|..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|..+..+++|++|++++|. +..+|
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 5544444556666666666666665544433445666666666666664 344666666666666666666666 34443
Q ss_pred cc-cc------cccccCceeccchhh
Q 003330 782 KS-VN------SLKSLRQVICEEDVS 800 (829)
Q Consensus 782 ~~-l~------~l~~L~~L~~~~~~~ 800 (829)
.. +. ..+.|+.+++.+|..
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhhcCCcccccccccccceEeecCcc
Confidence 22 21 134555666665543
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.8e-18 Score=180.93 Aligned_cols=200 Identities=17% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCceEEEccccCCccccCCCcccCCccccceeeecccccCCC-CCCccccCCCceEEeeecc-ccccccccccccCCcc
Q 003330 590 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVLCK-INNSLDQSVVDLPKTL 667 (829)
Q Consensus 590 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~ 667 (829)
++|+.|++.++....... ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. +....+ ..+..+
T Consensus 32 ~~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----ATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----TTTTTC
T ss_pred CCceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH----HHhcCC
Confidence 345555554444332211 1234445555555555555443 3334445555555555443 221111 112334
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEe
Q 003330 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLN 746 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~ 746 (829)
++|++|++++|......|..+.++++|++|++++|......+..+..+++|++|++++|.. ..+|. .+..+++|++|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEEE
Confidence 4555555555433333344445555555555555443222223344555555555555432 22222 344455555555
Q ss_pred ccCCcCCCCCccccCCCccccEeeccccccCccCC-cccccccccCceeccch
Q 003330 747 ISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 798 (829)
Q Consensus 747 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~ 798 (829)
+++|......|..+..+++|+.|++++|.+ ..+| ..+..+++|+.|++++|
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcC-CcCCHHHcccCcccCEEeccCC
Confidence 555433333344455555555555555542 2222 23444555555554444
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=4.1e-19 Score=207.03 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=145.8
Q ss_pred cCCceEEEEEeccCCCccccChhhhcCCCCceEEEcccc-CCc-cccCCCc---ccCCccccceeeecccccCCCCC--C
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYS-TSN-AALGNFS---VCSNLTNLRSLWLEKVSISQLPK--S 635 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~-~~~-~~~~~~~---~l~~l~~L~~L~l~~~~i~~lp~--~ 635 (829)
.+++|+.|.|..+.. ...+|..|.++++|++|++.+|. ... ..+..+. .+..+++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 577788888777665 45677778888888888888776 443 2211111 11234677777777777777777 6
Q ss_pred ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCC-CcEEEecc-------------
Q 003330 636 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS-LKNLSVTN------------- 701 (829)
Q Consensus 636 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~-L~~L~l~~------------- 701 (829)
+..+++|++|++++|.+.+.++ . +..+++|+.|++++|. +..+|..++.+++ |++|++++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred hccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 7777777777777776553333 1 1334455555555542 2244544555554 55555554
Q ss_pred ------------ccccccchhhcc-------CCCCCCEEecccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccccC
Q 003330 702 ------------CHSLQELPADIG-------KMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIG 761 (829)
Q Consensus 702 ------------~~~~~~lp~~l~-------~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~l~ 761 (829)
|......|..+. .+++|++|++++|... .+|.. +..+++|++|++++|.. ..+|..+.
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~ 477 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML-TEIPKNSL 477 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC-SBCCSSSS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC-CCcCHHHh
Confidence 444444444444 4445555555554332 44443 23466677777766543 35555432
Q ss_pred C--------CccccEeeccccccCccCCcccc--cccccCceeccchhhhhhhhhhhhCCCceEEecc
Q 003330 762 N--------LIRLEKIDMRECSQIWSLPKSVN--SLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPA 819 (829)
Q Consensus 762 ~--------l~~L~~L~l~~~~~~~~lp~~l~--~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~ 819 (829)
. +++|+.|++++|. +..+|..+. .+++|+.|++++|.....+.-...+|+|+.....
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECC
T ss_pred ccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECC
Confidence 2 2277788888777 457777776 7788888888777555544444467777776553
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.5e-18 Score=201.20 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=156.3
Q ss_pred ceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 544 AQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
.+++.+....+..++.. ...+++|+.|.|..+.. ....|..|..+++|++|++.+|....... ..++++++|++|
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L 128 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVL 128 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCH---HHHcCCCCCCEE
Confidence 34444444443333321 12355666666554432 22233456666666666666665433221 234566666677
Q ss_pred eecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecc
Q 003330 623 WLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTN 701 (829)
Q Consensus 623 ~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 701 (829)
++++|.++.+|.. +..+++|++|+|++|.+....+. .+..+++|++|++++|. +..+| ++.+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh----hhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhccc
Confidence 7766666666665 35666677777666655432222 22446666666666663 22222 23334444444433
Q ss_pred ccc------------------cccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCC
Q 003330 702 CHS------------------LQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNL 763 (829)
Q Consensus 702 ~~~------------------~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l 763 (829)
|.. +..+|.. ..++|+.|++++|.... +..+..+++|+.|+|++|......|..+..+
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred CccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 321 1122211 12457777777755433 3567889999999999987666667889999
Q ss_pred ccccEeeccccccCccCCcccccccccCceeccchhhhhhhhhhhhCCCceEEecccc
Q 003330 764 IRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 764 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 821 (829)
++|+.|+|++|. +..+|..+..+++|+.|++++|.....+.....+|+|+.....+|
T Consensus 278 ~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 278 QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred cCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC
Confidence 999999999998 667888888899999999998866655544456777777655543
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=2.5e-18 Score=188.53 Aligned_cols=263 Identities=16% Similarity=0.100 Sum_probs=167.7
Q ss_pred cceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 543 NAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
+.+++.+....+..++.. -..+++++.|.|..+.. ....|..|.++++|++|++.+|...... ...+.++++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 121 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV 121 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCC---HHHhcCCCCCCE
Confidence 356666666555544432 13456777776655443 2223346777777777777776544322 123567777778
Q ss_pred eeecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEec
Q 003330 622 LWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVT 700 (829)
Q Consensus 622 L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 700 (829)
|++++|.++.+|.. +..+++|++|++++|.+....+. .+..+++|+.|++++|.. ..++ +..+++|+.|+++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTSSCTTCCEEECCSSCC-SBCC--GGGCTTCSEEECC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh----hccCCCCCCEEECCCCcC-Cccc--cccccccceeecc
Confidence 88887777777766 46677788888777766543222 234567777777777643 3232 3344444444444
Q ss_pred cccc------------------cccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCC
Q 003330 701 NCHS------------------LQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGN 762 (829)
Q Consensus 701 ~~~~------------------~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~ 762 (829)
+|.. +..+|. ...++|+.|++++|.... . ..+..+++|++|++++|......|..+..
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 3321 222222 123567777777765433 3 45788899999999997655555778899
Q ss_pred CccccEeeccccccCccCCcccccccccCceeccchhhhhhhhhhhhCCCceEEecccc
Q 003330 763 LIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 763 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 821 (829)
+++|++|++++|. +..+|..+..+++|+.|++++|.....+.....+|+|+.....++
T Consensus 271 l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 271 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred cccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 9999999999998 677787778899999999988865555444456777776655443
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=195.52 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=64.6
Q ss_pred CcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003330 542 FNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
...+++.++...+..... .-..+++|++|.|..+.. ....|..|.++++|++|++++|...... .. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~-~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKIS-----CH-PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEE-----CC-CCCCCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecCCCceeecC-----cc-ccCCcc
Confidence 346677776666554431 123567777777766553 3334667788888888888777654321 11 566777
Q ss_pred eeeecccccCC--CCCCccccCCCceEEeeeccc
Q 003330 621 SLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 621 ~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~ 652 (829)
+|++++|.++. +|..+..+++|++|++++|.+
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 77777777664 445666667777666666654
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.8e-18 Score=193.98 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=110.5
Q ss_pred CccccccccccccccccccCCccccCcCCCcEEEeccccccc--cchhhccCCCCCCEEecccCCcCCccccc-ccCCCC
Q 003330 665 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVC 741 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~ 741 (829)
..+++|++|++++|.....+|..++++++|++|++++|.... .+|..++.+++|++|++++|.....+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467888999999887666678888899999999999887544 56677888999999999987766657764 677788
Q ss_pred CCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhhh-hhhCCCceEEecc
Q 003330 742 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDL-EKTLPNLHVQVPA 819 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l-~~~lp~L~~~~~~ 819 (829)
|++|++++|.....+|..+. ++|+.|++++|. +..+|..+..+++|+.|++++|.....+.- ...+|+|+.....
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 88888888765555554443 677788888777 557777777778888888777755544332 3456666655433
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.6e-18 Score=183.94 Aligned_cols=243 Identities=16% Similarity=0.127 Sum_probs=136.4
Q ss_pred cceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 543 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
..+.+.+....+..... .-..+++|+.|.|..+.. ....|..|.++++|++|++.+|....... .+ .++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~--~~~L~~ 127 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPP----NL--PSSLVE 127 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCCS----SC--CTTCCE
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccCc----cc--cccCCE
Confidence 34555555444443321 123445566555544432 22234556666666666666554332111 11 156666
Q ss_pred eeecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEec
Q 003330 622 LWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVT 700 (829)
Q Consensus 622 L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 700 (829)
|++++|.+..+|.. +..+++|++|++++|.+... ...+.....+ +|+.|++++|. +..+|..+. ++|++|+++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS--GFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLD 201 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG--GSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccC--CCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECC
Confidence 66666666665554 55566666666666654321 0111112223 66666666663 444555443 577777777
Q ss_pred cccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccC
Q 003330 701 NCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 780 (829)
Q Consensus 701 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~l 780 (829)
+|......|..+..+++|++|++++|......|..+..+++|++|++++| .+..+|..+..+++|+.|++++|. +..+
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~ 279 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKV 279 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCcc
Confidence 76654444466777777777777776555544456777777777777775 445777777777777777777777 4444
Q ss_pred Cc-cccc------ccccCceeccchhh
Q 003330 781 PK-SVNS------LKSLRQVICEEDVS 800 (829)
Q Consensus 781 p~-~l~~------l~~L~~L~~~~~~~ 800 (829)
|. .+.. ..+|+.+++.+|..
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHccccccccccccccceEeecCcc
Confidence 42 2222 35566777766643
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.6e-18 Score=205.52 Aligned_cols=161 Identities=15% Similarity=0.193 Sum_probs=106.0
Q ss_pred cceEEEeeeCCccc------------------cccccc--cCCceEEEEEeccCCCccccChhhhcCCCCceEEEcccc-
Q 003330 543 NAQIVSIHTGDMRE------------------MDWFRM--EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYS- 601 (829)
Q Consensus 543 ~~~~lsi~~~~~~~------------------~~~~~~--~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~- 601 (829)
+.+.+.++...+.. ++-... .+++|+.|.|..+.. ...+|..|.++++|+.|++.+|.
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCC
Confidence 46778887766655 333222 678899999887765 56788889999999999999886
Q ss_pred CCc-cccCCC---c-ccCCccccceeeecccccCCCCC--CccccCCCceEEeeeccccccccccccccCCccccccccc
Q 003330 602 TSN-AALGNF---S-VCSNLTNLRSLWLEKVSISQLPK--SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELT 674 (829)
Q Consensus 602 ~~~-~~~~~~---~-~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~ 674 (829)
... ..+..+ . .+..+++|++|++++|.+..+|. .+..+++|+.|+|++|.+. .++ .+..+++|+.|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~ 601 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLK 601 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESEEE
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceEEE
Confidence 443 221111 1 23455578888888888887777 6777888888888777765 332 224466666666
Q ss_pred cccccccccCCccccCcCC-CcEEEeccccccccchhhc
Q 003330 675 FDHCDDLMKLPPSICGLQS-LKNLSVTNCHSLQELPADI 712 (829)
Q Consensus 675 L~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~lp~~l 712 (829)
|++|.. ..+|..+..+++ |+.|++++|.. ..+|..+
T Consensus 602 Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~ 638 (876)
T 4ecn_A 602 LDYNQI-EEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIF 638 (876)
T ss_dssp CCSSCC-SCCCTTSCEECTTCCEEECCSSCC-CSCCSCC
T ss_pred CcCCcc-ccchHHHhhccccCCEEECcCCCC-CcCchhh
Confidence 666643 366666666666 66666666542 2444433
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=3.7e-18 Score=198.88 Aligned_cols=182 Identities=19% Similarity=0.204 Sum_probs=112.4
Q ss_pred cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCcc-ccCc
Q 003330 613 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPS-ICGL 691 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-i~~l 691 (829)
+.++++|++|++++|.++.+|..+..+++|++|++++|.+....+.. ...+++|++|++++|.....+|.. +..+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS----ASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC----GGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh----hhccCcCCEEECCCCCcccccchhhhhcc
Confidence 56778888999999888888888888889999999888766433322 234666777777766554445433 5666
Q ss_pred CCCcEEEeccccccccc--hhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccc-cCCCccccE
Q 003330 692 QSLKNLSVTNCHSLQEL--PADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEK 768 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~ 768 (829)
++|++|++++|...... |..+..+++|++|++++|......|..+..+++|++|++++|......|.. +..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 66666666665543332 445666666666666665554444555556666666666655443333322 555556666
Q ss_pred eeccccccCccCCcccccccccCceeccch
Q 003330 769 IDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 769 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
|++++|.+....|..+..+++|+.|++++|
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 666665544444455555555555555555
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.3e-18 Score=202.73 Aligned_cols=263 Identities=16% Similarity=0.132 Sum_probs=208.4
Q ss_pred cceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 543 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
+.+.+.+....+..+++ ...+++++.|.+..+.. ..+| .+ .+++|+.|++.+|...... .+..+++|++|
T Consensus 286 ~L~~L~l~~~~~~~l~~-l~~~~~L~~L~l~~n~l--~~lp-~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L 355 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQL--KQFP-TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYL 355 (606)
T ss_dssp TCSEEEEESCCCCCCCC-CCTTCCCSEEEEESCCC--SSCC-CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEE
T ss_pred CCCEEEecCccchhhhh-ccccccCCEEEcccccC--cccc-cC-CCCccceeeccCCcCccch-----hhccCCCCCEE
Confidence 46677777777666662 34567888888877764 6777 45 9999999999988432211 45688999999
Q ss_pred eecccccCCC---CCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEEE
Q 003330 623 WLEKVSISQL---PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLS 698 (829)
Q Consensus 623 ~l~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~ 698 (829)
++++|.++.+ |..+..+++|++|++++|.+... +.....+++|+.|++++|......| ..+..+++|++|+
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-----CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc-----hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 9999998865 66788899999999999886542 2334568999999999997666555 5788999999999
Q ss_pred eccccccccchhhccCCCCCCEEecccCCcCC-cccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccC
Q 003330 699 VTNCHSLQELPADIGKMKSLQILRLYACPHLR-TLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQI 777 (829)
Q Consensus 699 l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 777 (829)
+++|......|..++++++|++|++++|...+ .+|..+..+++|++|++++|......|..+..+++|++|++++|.+.
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 99998777788889999999999999987766 37888999999999999998766666777999999999999999966
Q ss_pred ccCCcccccccccCceeccchhhhhhhhhhhhCC-CceEEeccc
Q 003330 778 WSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLP-NLHVQVPAK 820 (829)
Q Consensus 778 ~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp-~L~~~~~~~ 820 (829)
+..|..+..+++|+.|++++|.....+.-...+| +|+.....+
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 6668889999999999999886665554445666 477655443
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.5e-19 Score=192.05 Aligned_cols=216 Identities=13% Similarity=0.024 Sum_probs=127.1
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
+++++.|.|..+.. ....|..|.++++|++|++.+|...... .+..+++|++|++++|.++.++. .++|+
T Consensus 33 ~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCC-CCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCCCEEECcCCcc-CcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCCEEECcCCccccccC----CCCcC
Confidence 45666666555443 2223356777777777777776543322 25667777777777777765552 36677
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhc-cCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADI-GKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l-~~l~~L~~L~ 722 (829)
+|++++|.+..... ..+++|+.|++++|......|..++.+++|++|++++|......|..+ ..+++|++|+
T Consensus 103 ~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 103 TLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp EEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 77777666543221 125566777776664433334456666677777777665444444444 3566677777
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhh
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~ 800 (829)
+++|. +..+|.. ..+++|++|++++| .+..+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|..
T Consensus 176 L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 176 LQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred CCCCc-Ccccccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence 76654 3333332 24666667776664 344555556666667777776666 455666666666666666665543
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=9.1e-18 Score=179.52 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=180.9
Q ss_pred CceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 565 PKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
+.++.|.|..+. ...+| ..|.++++|++|++.+|...... ...+.++++|++|++++|.++.+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeC---HHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 678887766554 44555 47999999999999998765432 2357889999999999999999998765 7999
Q ss_pred eEEeeeccccccccccccccCCcccccccccccccccc--ccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEE
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL--MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 721 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 721 (829)
+|++++|.+....... +..+++|+.|++++|... +..|..+.++++|++|++++|. +..+|..+. ++|++|
T Consensus 125 ~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 125 ELRVHENEITKVRKSV----FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTEL 197 (330)
T ss_dssp EEECCSSCCCBBCHHH----HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEE
T ss_pred EEECCCCcccccCHhH----hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEE
Confidence 9999998876433322 356899999999998653 2567788999999999999976 566776554 899999
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003330 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|..+..+++|+.|++++|...
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCC
Confidence 999987666667889999999999999976544445578999999999999998 6799999999999999999888544
Q ss_pred h
Q 003330 802 A 802 (829)
Q Consensus 802 ~ 802 (829)
.
T Consensus 277 ~ 277 (330)
T 1xku_A 277 A 277 (330)
T ss_dssp C
T ss_pred c
Confidence 3
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=189.49 Aligned_cols=232 Identities=18% Similarity=0.155 Sum_probs=184.7
Q ss_pred CccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCC-CccccCCCceEEeeeccccccc
Q 003330 578 EEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSL 656 (829)
Q Consensus 578 ~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~ 656 (829)
....+|..+. ++++.|++.+|....... ..|.++++|++|+|++|.++.++. .+..+++|++|+|++|.+....
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC
Confidence 3566776554 689999999987655433 347889999999999999998774 5888999999999999876433
Q ss_pred cccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchh-hccCCCCCCEEecccCCcCCccccc
Q 003330 657 DQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPAR 735 (829)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~ 735 (829)
.. .+..+++|++|+|++|......+..+.++++|++|++++|..+..++. .+.++++|++|++++|. +..+|.
T Consensus 129 ~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~- 202 (440)
T 3zyj_A 129 NG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN- 202 (440)
T ss_dssp TT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-
T ss_pred Hh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-
Confidence 22 335689999999999864444445789999999999999888888775 68899999999999965 556774
Q ss_pred ccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhh-hhhhhCCCce
Q 003330 736 ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKTLPNLH 814 (829)
Q Consensus 736 ~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~-~l~~~lp~L~ 814 (829)
+..+++|++|+|++|......|..+..+++|+.|++++|.+....|..+..+++|+.|++++|...... .....+|+|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 789999999999998655555778999999999999999966666778899999999999988555432 2334678887
Q ss_pred EEeccc
Q 003330 815 VQVPAK 820 (829)
Q Consensus 815 ~~~~~~ 820 (829)
.....+
T Consensus 283 ~L~L~~ 288 (440)
T 3zyj_A 283 RIHLHH 288 (440)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 665443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=190.71 Aligned_cols=248 Identities=15% Similarity=0.062 Sum_probs=142.5
Q ss_pred cceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 543 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
..+.+.+....+...+. .-..+++++.|.|..+.. ....|..|.++++|++|++.+|...... ...+.++++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLS---SSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSSCC---HHHHTTCTTCSE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc-CccCHhhcCCCCCCCEEECCCCcCCcCC---HhHhCCCccCCE
Confidence 35555555554444332 123456666666554432 2223445666666666666665443211 012456666666
Q ss_pred eeecccccCCCCC--CccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 622 LWLEKVSISQLPK--SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 622 L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
|++++|.++.+|. .+..+++|++|++++|..... ..+..+..+++|+.|++++|......|..+..+++|++|++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK---IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccc---cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 6666666666665 456666666666666532111 11122344666666666666544445666666666677766
Q ss_pred ccccccccchhh-ccCCCCCCEEecccCCcCCcccccc---cCCCCCCEEeccCCcCC----CCCccccCCCccccEeec
Q 003330 700 TNCHSLQELPAD-IGKMKSLQILRLYACPHLRTLPARI---CELVCLKYLNISQCVSL----SCLPQGIGNLIRLEKIDM 771 (829)
Q Consensus 700 ~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~---~~l~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~l 771 (829)
++|. +..+|.. +..+++|+.|++++|......+..+ ...+.++.++++++... ..+|..+..+++|+.|++
T Consensus 206 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 206 HMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp ECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 6655 3444433 3346666666666654433222211 23445555555554321 146777888999999999
Q ss_pred cccccCccCCccc-ccccccCceeccchh
Q 003330 772 RECSQIWSLPKSV-NSLKSLRQVICEEDV 799 (829)
Q Consensus 772 ~~~~~~~~lp~~l-~~l~~L~~L~~~~~~ 799 (829)
++|. +..+|..+ ..+++|+.|++++|.
T Consensus 285 s~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 285 SRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 9998 56888774 789999999988774
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=4.1e-18 Score=202.05 Aligned_cols=224 Identities=16% Similarity=0.238 Sum_probs=116.2
Q ss_pred cCCceEEEEEeccCCCccccCh--hhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPP--FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLK 640 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~--~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~ 640 (829)
.+|+|+.|.|..+.. ..+|. .|.++++|+.|++.+|... .++.+.++++|+.|++++|.+..+|..+..++
T Consensus 546 ~l~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~-----~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~ 618 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVR-----HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618 (876)
T ss_dssp TTTTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCC-----BCCCCCTTSEESEEECCSSCCSCCCTTSCEEC
T ss_pred ccCCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcc-----cchhhcCCCcceEEECcCCccccchHHHhhcc
Confidence 456777777766554 37777 7888888888888777654 12256677777777777777777777777777
Q ss_pred C-CceEEeeeccccccccccccc----------------------cC---C--ccccccccccccccccccCCcccc-Cc
Q 003330 641 K-MQKISFVLCKINNSLDQSVVD----------------------LP---K--TLPCLTELTFDHCDDLMKLPPSIC-GL 691 (829)
Q Consensus 641 ~-L~~L~L~~~~~~~~~~~~~~~----------------------~~---~--~~~~L~~L~L~~~~~~~~lp~~i~-~l 691 (829)
+ |+.|+|++|.+. .++..+.. +. . .+++|+.|+|++|. +..+|..+. .+
T Consensus 619 ~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l 696 (876)
T 4ecn_A 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATG 696 (876)
T ss_dssp TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTT
T ss_pred ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccC
Confidence 6 777777776654 22211100 00 0 11244444444442 223443332 44
Q ss_pred CCCcEEEeccccccccchhhccC--------CCCCCEEecccCCcCCccccccc--CCCCCCEEeccCCcCCCCCccccC
Q 003330 692 QSLKNLSVTNCHSLQELPADIGK--------MKSLQILRLYACPHLRTLPARIC--ELVCLKYLNISQCVSLSCLPQGIG 761 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~lp~~l~~--------l~~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~l~~~~~l~~lp~~l~ 761 (829)
++|+.|+|++|. +..+|..+.. +++|+.|+|++|. +..+|..+. .+++|+.|+|++|. +..+|..+.
T Consensus 697 ~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~ 773 (876)
T 4ecn_A 697 SPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPL 773 (876)
T ss_dssp CCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGG
T ss_pred CCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCC-CCccchhhh
Confidence 455555555443 2244433222 1145555555432 224444443 45555555555432 223444444
Q ss_pred CCccccEeeccc------cccCccCCcccccccccCceeccch
Q 003330 762 NLIRLEKIDMRE------CSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 762 ~l~~L~~L~l~~------~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
.+++|+.|+|++ |.+.+.+|..+.++++|+.|++++|
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 555555555533 3334444544555555555554444
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=8.9e-18 Score=179.72 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=186.5
Q ss_pred eEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeee
Q 003330 545 QIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWL 624 (829)
Q Consensus 545 ~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l 624 (829)
+.+.+....+..++. .-.++++.|.|..+.. ....|..|.++++|++|++.+|...... ...+.++++|++|++
T Consensus 36 ~~l~~~~~~l~~ip~--~~~~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPK--EISPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLYI 109 (332)
T ss_dssp TEEECCSSCCSSCCS--CCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEEC
T ss_pred CEEECCCCCccccCC--CCCCCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEEC
Confidence 444444444443332 1236788887766553 2333567999999999999998765432 245788999999999
Q ss_pred cccccCCCCCCccccCCCceEEeeeccccccccccccccCCcccccccccccccccc--ccCCccccCcCCCcEEEeccc
Q 003330 625 EKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL--MKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 625 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~l~~~ 702 (829)
++|.++.+|..+. ++|++|++++|.+...... .+..+++|+.|++++|... +..|..+..+ +|++|++++|
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 9999999998776 8999999999987643322 2356899999999998653 3567777778 9999999998
Q ss_pred cccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCc
Q 003330 703 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 782 (829)
Q Consensus 703 ~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 782 (829)
. +..+|..+. ++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|++++|. +..+|.
T Consensus 183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~ 258 (332)
T 2ft3_A 183 K-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPA 258 (332)
T ss_dssp B-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT
T ss_pred C-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecCh
Confidence 6 566776654 799999999987766666789999999999999976554445578999999999999998 679999
Q ss_pred ccccccccCceeccchhhhh
Q 003330 783 SVNSLKSLRQVICEEDVSWA 802 (829)
Q Consensus 783 ~l~~l~~L~~L~~~~~~~~~ 802 (829)
.+..+++|+.|++++|....
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCB
T ss_pred hhhcCccCCEEECCCCCCCc
Confidence 99999999999999885443
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.2e-18 Score=189.14 Aligned_cols=232 Identities=18% Similarity=0.117 Sum_probs=184.8
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCC-CCccccCCCceEEeeecccccccc
Q 003330 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLD 657 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~~~ 657 (829)
...+|..+. ++|++|++.+|....... ..|.++++|++|+|++|.++.++ ..+..+++|++|+|++|.+.....
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQA---DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECH---HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 556676543 689999999987655432 34788999999999999999776 458889999999999998764332
Q ss_pred ccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchh-hccCCCCCCEEecccCCcCCcccccc
Q 003330 658 QSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPARI 736 (829)
Q Consensus 658 ~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~ 736 (829)
..+..+++|++|+|++|......+..+.++++|+.|++++|..+..++. .+.++++|++|++++|. +..+| .+
T Consensus 141 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~ 214 (452)
T 3zyi_A 141 ----GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NL 214 (452)
T ss_dssp ----TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CC
T ss_pred ----hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cc
Confidence 2345689999999999964443345789999999999999888888875 58899999999999975 45565 47
Q ss_pred cCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhh-hhhhhCCCceE
Q 003330 737 CELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKTLPNLHV 815 (829)
Q Consensus 737 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~-~l~~~lp~L~~ 815 (829)
..+++|++|+|++|......|..+..+++|+.|++++|.+....|..+..+++|+.|++++|...... .....+|+|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 89999999999998766666788999999999999999976667788999999999999988555432 23346788876
Q ss_pred Eecccc
Q 003330 816 QVPAKC 821 (829)
Q Consensus 816 ~~~~~~ 821 (829)
....++
T Consensus 295 L~L~~N 300 (452)
T 3zyi_A 295 LHLHHN 300 (452)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 654443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.5e-17 Score=179.17 Aligned_cols=253 Identities=16% Similarity=0.210 Sum_probs=155.3
Q ss_pred ceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceee
Q 003330 544 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 623 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 623 (829)
.+.+.+....+...+. -..+++|+.|.+..+.. ..+| .+.++++|++|++.+|.... ++.+..+++|++|+
T Consensus 68 L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i--~~~~-~~~~l~~L~~L~l~~n~i~~-----~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 68 LEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNEDNISD-----ISPLANLTKMYSLN 138 (347)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--CCCG-GGTTCTTCSEEECTTSCCCC-----CGGGTTCTTCCEEE
T ss_pred ccEEEccCCccccchh-hhcCCcCCEEEccCCcc--cCch-HHcCCCcCCEEECcCCcccC-----chhhccCCceeEEE
Confidence 4455554444443332 23445555555544422 2222 35555666666655554322 12245555666666
Q ss_pred ecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecccc
Q 003330 624 LEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCH 703 (829)
Q Consensus 624 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 703 (829)
+++|.....+..+..+++|++|++++|.+..... ...+++|+.|++++|. +..++. +..+++|+.|++++|.
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC
Confidence 6665433333335556666666666655443211 2346777777777763 444544 6677777777777765
Q ss_pred ccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcc
Q 003330 704 SLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 783 (829)
Q Consensus 704 ~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 783 (829)
. ..++. +..+++|++|++++|.. ..+|. +..+++|++|++++| .+..+ +.+..+++|++|++++|. +..+| .
T Consensus 211 l-~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~ 282 (347)
T 4fmz_A 211 I-TDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTN-QISDI-NAVKDLTKLKMLNVGSNQ-ISDIS-V 282 (347)
T ss_dssp C-CCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSSC-CCCCG-G
T ss_pred C-CCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCC-ccCCC-hhHhcCCCcCEEEccCCc-cCCCh-h
Confidence 3 33333 77888889999888654 44554 788899999999886 44555 358889999999999997 56665 5
Q ss_pred cccccccCceeccchhhhh-hhhhhhhCCCceEEecccc
Q 003330 784 VNSLKSLRQVICEEDVSWA-WKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 784 l~~l~~L~~L~~~~~~~~~-~~~l~~~lp~L~~~~~~~~ 821 (829)
+..+++|+.|++++|.... .....+.+|+|+.....+|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 7888999999998885443 2233457888887766555
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.4e-18 Score=181.91 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=180.5
Q ss_pred cCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCC---CCCccccCCCceEEeeecc
Q 003330 575 SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL---PKSSIPLKKMQKISFVLCK 651 (829)
Q Consensus 575 ~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~L~~~~ 651 (829)
+......+|..+. ++|++|++.+|....... ..+.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CCCCcccCCCCCC--CCCCEEECCCCccCccCH---hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3334566676443 689999999887653221 2367899999999999998855 5667789999999999998
Q ss_pred ccccccccccccCCccccccccccccccccccCC--ccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcC
Q 003330 652 INNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP--PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHL 729 (829)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l 729 (829)
+... +.....+++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++|...
T Consensus 90 i~~l-----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 90 VITM-----SSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp EEEE-----EEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred cccC-----hhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 7632 2223568999999999985 44454 47899999999999999877777788999999999999998765
Q ss_pred C-cccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhh-hhhh
Q 003330 730 R-TLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAW-KDLE 807 (829)
Q Consensus 730 ~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~-~~l~ 807 (829)
. .+|..+..+++|++|++++|......|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|..... ....
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 5788899999999999999865555577899999999999999995444445788899999999998855442 2222
Q ss_pred hhCC-CceEEeccc
Q 003330 808 KTLP-NLHVQVPAK 820 (829)
Q Consensus 808 ~~lp-~L~~~~~~~ 820 (829)
..+| +|+.....+
T Consensus 244 ~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 244 QHFPSSLAFLNLTQ 257 (306)
T ss_dssp CCCCTTCCEEECTT
T ss_pred HhhhccCCEEEccC
Confidence 3454 676654443
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=1.7e-17 Score=178.84 Aligned_cols=256 Identities=16% Similarity=0.196 Sum_probs=199.1
Q ss_pred CcceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 542 FNAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
...+.+.+....+..++. -..+++|+.|.+..+. ...+|. +.++++|++|++.+|... ..+..+..+++|++
T Consensus 88 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~----~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNL----SDLSPLSNMTGLNY 159 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTC----CCCGGGTTCTTCCE
T ss_pred CcCCEEEccCCcccCchH-HcCCCcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCc----ccccchhhCCCCcE
Confidence 356788887777666653 2467899998887655 445555 899999999999888532 23455789999999
Q ss_pred eeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecc
Q 003330 622 LWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTN 701 (829)
Q Consensus 622 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 701 (829)
|++++|.+..++. +..+++|++|++++|.+..... ...+++|+.|++++|. +..++. +..+++|++|++++
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCccccccc------ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccC
Confidence 9999999998876 8889999999999988764322 3458899999999985 444444 88999999999999
Q ss_pred ccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCC
Q 003330 702 CHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 702 ~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
|. +..++. +..+++|++|++++|.. ..+ ..+..+++|++|++++| .+..+| .+..+++|+.|++++|.+.+..|
T Consensus 231 n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 231 NK-ITDLSP-LANLSQLTWLEIGTNQI-SDI-NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp SC-CCCCGG-GTTCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred Cc-cCCCcc-hhcCCCCCEEECCCCcc-CCC-hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 86 455554 88999999999999754 444 45888999999999997 455564 58889999999999999666777
Q ss_pred cccccccccCceeccchhhhhhhhhhhhCCCceEEecccc
Q 003330 782 KSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 782 ~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 821 (829)
..+..+++|+.|++++|....... ...+|+|+.....+|
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred hHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 788899999999999987666555 447888877665544
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.7e-17 Score=191.07 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=91.5
Q ss_pred CccccccccccccccccccCCccccCcCCCcEEEeccccccc--cchhhccCCCCCCEEecccCCcCCccccc-ccCCCC
Q 003330 665 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVC 741 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~ 741 (829)
..+++|++|++++|...+.+|..++++++|++|++++|.... .+|..+.++++|++|++++|.....+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456778888888886666677778888888888888876433 34456778888888888887665545543 556666
Q ss_pred CCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhhh-hhhCCCceEE
Q 003330 742 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDL-EKTLPNLHVQ 816 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l-~~~lp~L~~~ 816 (829)
|++|++++|.....+|..+. ++|+.|++++|. +..+|..+..+++|+.|++++|.....+.- ...+|+|+..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 66666666544333333222 456666666665 445665555666666666655543333221 2344444443
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=2.1e-17 Score=190.35 Aligned_cols=269 Identities=14% Similarity=0.027 Sum_probs=162.5
Q ss_pred CcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003330 542 FNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
...+.+.++...+....- .-..+++|+.|.|..+.. ....|..|.++++|++|++++|...... .. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~-~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQNIS-----CC-PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECTTSCCCEEC-----SC-CCTTCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-CcCCHHHhCCCCCCCEEECCCCcCCccC-----cc-ccccCC
Confidence 457788887776665542 224578888888876654 3344677889999999999888765322 12 678888
Q ss_pred eeeecccccCCCC--CCccccCCCceEEeeeccccccccc-------------------------ccccc----------
Q 003330 621 SLWLEKVSISQLP--KSSIPLKKMQKISFVLCKINNSLDQ-------------------------SVVDL---------- 663 (829)
Q Consensus 621 ~L~l~~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~~~~~-------------------------~~~~~---------- 663 (829)
+|++++|.+..+| ..+..+++|++|++++|.+...... .+...
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 8888888888654 5688888888888887765431100 00000
Q ss_pred ------------CCccc-------------------------------------------------------cccccccc
Q 003330 664 ------------PKTLP-------------------------------------------------------CLTELTFD 676 (829)
Q Consensus 664 ------------~~~~~-------------------------------------------------------~L~~L~L~ 676 (829)
...++ +|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 00011 44555555
Q ss_pred cccccccCCccc-----------------------------------------------------cCcCCCcEEEecccc
Q 003330 677 HCDDLMKLPPSI-----------------------------------------------------CGLQSLKNLSVTNCH 703 (829)
Q Consensus 677 ~~~~~~~lp~~i-----------------------------------------------------~~l~~L~~L~l~~~~ 703 (829)
+|...+.+|..+ ..+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 554333555443 455666666666666
Q ss_pred ccccchhhccCCCCCCEEecccCCcCC--cccccccCCCCCCEEeccCCcCCCCCccc-cCCCccccEeeccccccCccC
Q 003330 704 SLQELPADIGKMKSLQILRLYACPHLR--TLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWSL 780 (829)
Q Consensus 704 ~~~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~l 780 (829)
....+|..++++++|+.|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++|+.|++++|.+.+..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 555566666666777777776654332 33445666677777777665544435543 566667777777777654555
Q ss_pred CcccccccccCceeccchhhhhhhhhhhhCCCceEEecc
Q 003330 781 PKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPA 819 (829)
Q Consensus 781 p~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~ 819 (829)
|..+. ++|+.|++++|.....+.-...+|+|+.....
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECC
T ss_pred hhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECC
Confidence 54433 56777777776544443323366666665443
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.4e-17 Score=174.08 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=162.1
Q ss_pred CCceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccc-cCCC-CCCccccC
Q 003330 564 FPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQL-PKSSIPLK 640 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~l-p~~~~~l~ 640 (829)
.++++.|.+..+.. ..+| ..|.++++|++|++.+|....... ..+.++++|++|++++|. +..+ |..+..++
T Consensus 31 ~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCH---hhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 35777777765543 4444 679999999999999887654322 357789999999999997 8887 55688999
Q ss_pred CCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccCCCCCC
Q 003330 641 KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQ 719 (829)
Q Consensus 641 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~ 719 (829)
+|++|++++|.+....+ ..+..+++|++|++++|......+..+..+++|++|++++|.. ..+| ..+..+++|+
T Consensus 106 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCEECH----hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccC
Confidence 99999999988765333 3345689999999999864443445588999999999999864 4555 4688999999
Q ss_pred EEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCc
Q 003330 720 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW 778 (829)
Q Consensus 720 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 778 (829)
.|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|+...
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999988777778889999999999999975544333558999999999999998543
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=200.39 Aligned_cols=276 Identities=14% Similarity=0.012 Sum_probs=168.3
Q ss_pred CCCcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccc
Q 003330 540 QPFNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTN 618 (829)
Q Consensus 540 ~~~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 618 (829)
.+...+.+.++...+....- .-..+++|++|.|..+.......|..|.++++|++|++.+|...... ...+.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCcc
Confidence 34456777777665554321 22456777777776664422333666777888888887777654332 234566677
Q ss_pred cceeeecccccCC-CCCC--ccccCCCceEEeeeccccccccccccccCCcccccccccccccccc--------------
Q 003330 619 LRSLWLEKVSISQ-LPKS--SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL-------------- 681 (829)
Q Consensus 619 L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-------------- 681 (829)
|++|++++|.+.. +|.. +..+++|++|+|++|.+...... ..+..+++|++|++++|...
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 7777777776664 3443 66677777777776665432211 11234555555555555433
Q ss_pred ------------ccCCccccCcCC------CcEEEeccccccccchhhcc------------------------------
Q 003330 682 ------------MKLPPSICGLQS------LKNLSVTNCHSLQELPADIG------------------------------ 713 (829)
Q Consensus 682 ------------~~lp~~i~~l~~------L~~L~l~~~~~~~~lp~~l~------------------------------ 713 (829)
...|..++.+++ |+.|++++|......|..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 333333333333 66677766643322222111
Q ss_pred ------C--CCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccc
Q 003330 714 ------K--MKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVN 785 (829)
Q Consensus 714 ------~--l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~ 785 (829)
. .++|+.|++++|......|..+..+++|+.|+|++|......|..+..+++|++|++++|.+.+..|..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1 25677777777666555666778888888888888765555566788888999999999885555577888
Q ss_pred cccccCceeccchhhhhhhh-hhhhCCCceEEecccc
Q 003330 786 SLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVPAKC 821 (829)
Q Consensus 786 ~l~~L~~L~~~~~~~~~~~~-l~~~lp~L~~~~~~~~ 821 (829)
.+++|+.|++++|....... ....+|+|+......+
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 88899999888774433221 2345777777655443
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=2.3e-18 Score=182.42 Aligned_cols=202 Identities=18% Similarity=0.139 Sum_probs=128.5
Q ss_pred cCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCcccc-----CCCceEEeeeccccccccccccc
Q 003330 588 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPL-----KKMQKISFVLCKINNSLDQSVVD 662 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~L~~~~~~~~~~~~~~~ 662 (829)
++++|++|++.+|.........+ .+..+++|++|++++|.++.+|..+..+ ++|++|++++|.+....+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---- 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---- 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT----
T ss_pred CcCCccEEEccCCcccchhHHHH-HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH----
Confidence 57777777777776543222211 0266777777777777777776656665 7777777777776543322
Q ss_pred cCCcccccccccccccccccc--CCccc--cCcCCCcEEEeccccccc--cch-hhccCCCCCCEEecccCCcCCccc-c
Q 003330 663 LPKTLPCLTELTFDHCDDLMK--LPPSI--CGLQSLKNLSVTNCHSLQ--ELP-ADIGKMKSLQILRLYACPHLRTLP-A 734 (829)
Q Consensus 663 ~~~~~~~L~~L~L~~~~~~~~--lp~~i--~~l~~L~~L~l~~~~~~~--~lp-~~l~~l~~L~~L~l~~~~~l~~lp-~ 734 (829)
.+..+++|++|++++|...+. +|..+ ..+++|++|++++|.... .++ ..+.++++|++|++++|......| .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 234577777777777764433 33334 677777777777765331 222 233566777777777766555443 3
Q ss_pred cccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 735 RICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 735 ~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
.+..+++|++|++++|. ++.+|..+. ++|++|++++|. +..+|. +..+++|+.|++++|.
T Consensus 248 ~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 45556777777777754 446776665 777777777777 555565 6777777777776663
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=184.62 Aligned_cols=248 Identities=15% Similarity=0.094 Sum_probs=174.7
Q ss_pred CceEEEEEeccCCCccccCh-hhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCC
Q 003330 565 PKAEVLILNFSSTEEYFLPP-FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKM 642 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 642 (829)
++++.|.+..+. ...+|. .|.++++|++|++.+|....... ..+.++++|++|++++|.++.+|.. +..+++|
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCH---hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 567777766554 344554 68888999999998876554322 3467788899999999988888876 7788899
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccC-CccccCcCCCcEEEeccccccccchhhccCCCCCCEE
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKL-PPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 721 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 721 (829)
++|++++|.+..... ...+..+++|++|++++|..+..+ |..+.++++|++|++++|......|..+..+++|++|
T Consensus 127 ~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 127 TFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp SEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CEEECCCCCCcccCc---hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 999998887653211 013356888999999888655555 4578888899999999887666667888888899999
Q ss_pred ecccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccc---cCCCccccEeeccccccCc----cCCcccccccccCce
Q 003330 722 RLYACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQG---IGNLIRLEKIDMRECSQIW----SLPKSVNSLKSLRQV 793 (829)
Q Consensus 722 ~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~---l~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L 793 (829)
++++|. +..+|.. +..+++|++|++++|......+.. ....+.++.++++++.+.. .+|..+..+++|+.|
T Consensus 204 ~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 204 ILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 998866 4555554 345788999999886543322222 2345567777777766332 577788899999999
Q ss_pred eccchhhhhhhhh-hhhCCCceEEecccc
Q 003330 794 ICEEDVSWAWKDL-EKTLPNLHVQVPAKC 821 (829)
Q Consensus 794 ~~~~~~~~~~~~l-~~~lp~L~~~~~~~~ 821 (829)
++++|.....+.- .+.+|+|+.....++
T Consensus 283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 9998866554432 357888877655444
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=1.5e-17 Score=196.45 Aligned_cols=247 Identities=16% Similarity=0.129 Sum_probs=140.4
Q ss_pred CcceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003330 542 FNAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
.+.+++.++...+...+.. -..+++++.|.|..+.. ....|..|.++++|++|++.+|....... ..+.++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-CCCCTTHHHHCTTCCEEECCSSCCCCCCT---TTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-CccCHHHHhcccCcCEEECCCCccCccCh---hhhccCCCCC
Confidence 4577777776666554432 24567888887766543 33446778888888888888776543221 2367788888
Q ss_pred eeeecccccCCCCC-CccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCcccc--CcCCCcEE
Q 003330 621 SLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSIC--GLQSLKNL 697 (829)
Q Consensus 621 ~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~--~l~~L~~L 697 (829)
+|++++|.+..+++ .+..+++|++|++++|.+....+.. ...+++|++|++++|......|..+. .+++|+.|
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 88888888887764 4778888888888887765433222 24566777777777643332222222 34666666
Q ss_pred EeccccccccchhhccCC---------------------------CCCCEEecccCCcCCcccccccCCCC--CCEEecc
Q 003330 698 SVTNCHSLQELPADIGKM---------------------------KSLQILRLYACPHLRTLPARICELVC--LKYLNIS 748 (829)
Q Consensus 698 ~l~~~~~~~~lp~~l~~l---------------------------~~L~~L~l~~~~~l~~lp~~~~~l~~--L~~L~l~ 748 (829)
++++|......|..+..+ ++|+.|++++|......|..+..++. |+.|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 666664433333333222 33444444444333333444444332 5555555
Q ss_pred CCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceecc
Q 003330 749 QCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICE 796 (829)
Q Consensus 749 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 796 (829)
+|......|..+..+++|++|++++|.+.+..|..+..+++|+.|++.
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 543332333445555555555555555444444444445555554443
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=1.2e-16 Score=179.32 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=69.6
Q ss_pred ccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCcccc
Q 003330 688 ICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLE 767 (829)
Q Consensus 688 i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 767 (829)
++.+++|+.|++++|. +..++ .+..+++|+.|++++|.... ++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 290 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALT 290 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCS
T ss_pred ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccC
Confidence 3444444445554443 22222 34555566666666544332 222 5566666666666653 334443 66677777
Q ss_pred EeeccccccCccCCcccccccccCceeccchhhhhhhhhhhhCCCceEEecccc
Q 003330 768 KIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 768 ~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 821 (829)
.|++++|. +..++. +..+++|+.|++++|.......+ ..+|+|+.....+|
T Consensus 291 ~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 291 NLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGGG-GGCTTCCEEECCSS
T ss_pred eEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchhh-ccCccCCEeECCCC
Confidence 77777776 444443 66777777777777755444433 46677766555443
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=190.82 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=123.1
Q ss_pred CCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccc---------------cCCccccccccccccc
Q 003330 614 SNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVD---------------LPKTLPCLTELTFDHC 678 (829)
Q Consensus 614 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---------------~~~~~~~L~~L~L~~~ 678 (829)
..+++|+.|++++|.+..+|..+..+ +|++|++++|.+.......++. ....+++|+.|++++|
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 44567778888888777777766666 6666666666544211100000 0023445555555544
Q ss_pred cc-------------------------cccCCccccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcc
Q 003330 679 DD-------------------------LMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTL 732 (829)
Q Consensus 679 ~~-------------------------~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~l 732 (829)
.. +..+|..+..+++|++|++++|......| ..+.++++|++|++++|......
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 32 22233335555556666665554333333 34566677777777776666666
Q ss_pred cccccCCCCCCEEeccCCcCC-CCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhh-hhhhhC
Q 003330 733 PARICELVCLKYLNISQCVSL-SCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKTL 810 (829)
Q Consensus 733 p~~~~~l~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~-~l~~~l 810 (829)
|..+..+++|++|++++|... ..+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...... .....+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 666777777777777776544 356777777888888888888755555777777888888888777444332 223466
Q ss_pred CCceEEeccc
Q 003330 811 PNLHVQVPAK 820 (829)
Q Consensus 811 p~L~~~~~~~ 820 (829)
|+|+.....+
T Consensus 518 ~~L~~L~l~~ 527 (570)
T 2z63_A 518 TSLQKIWLHT 527 (570)
T ss_dssp TTCCEEECCS
T ss_pred cCCcEEEecC
Confidence 7776654443
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=1.5e-16 Score=178.69 Aligned_cols=197 Identities=16% Similarity=0.223 Sum_probs=104.4
Q ss_pred cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccc----------------cccCCccccccccccc
Q 003330 613 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSV----------------VDLPKTLPCLTELTFD 676 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~----------------~~~~~~~~~L~~L~L~ 676 (829)
+.++++|++|++++|.+..++ .+..+++|++|++++|.+....+... ......+++|+.|+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 445566666666666655553 24555666666666555443221000 0011234455555555
Q ss_pred cccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCC
Q 003330 677 HCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCL 756 (829)
Q Consensus 677 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l 756 (829)
+|. +..+++ +..+++|+.|++++|.. ..++. +..+++|+.|++++|... .++. +..+++|+.|++++|.. ..+
T Consensus 252 ~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L~~n~l-~~~ 324 (466)
T 1o6v_A 252 NNQ-ISNLAP-LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNI-SDI 324 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCS-CCGG-GGGCTTCSEEECCSSCC-SCC
T ss_pred CCc-cccchh-hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCccc-Cchh-hcCCCCCCEEECcCCcC-CCc
Confidence 543 222222 55555566666655542 23332 555666666666664432 2333 55666666666666543 333
Q ss_pred ccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhhhhhhCCCceEEecccc
Q 003330 757 PQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 757 p~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 821 (829)
+. +..+++|+.|++++|. +..++ .+..+++|+.|++++|....+.. ...+|+|+.....+|
T Consensus 325 ~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 SP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp GG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred hh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence 32 5666777777777776 44443 56667777777777765555544 346677766554443
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=5.8e-17 Score=167.90 Aligned_cols=209 Identities=18% Similarity=0.127 Sum_probs=134.0
Q ss_pred cCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKK 641 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 641 (829)
.+++++.|.++.+. ...++ .+..+++|++|++.+|.... ++.+.++++|++|++++|.++.++.. +..+++
T Consensus 39 ~l~~L~~L~l~~~~--i~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSD--IKSVQ-GIQYLPNVRYLALGGNKLHD-----ISALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSC--CCCCT-TGGGCTTCCEEECTTSCCCC-----CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccceeeeeeCCCC--ccccc-ccccCCCCcEEECCCCCCCC-----chhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34566666655443 22333 47777888888877765432 34566777788888888877776665 567777
Q ss_pred CceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEE
Q 003330 642 MQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 721 (829)
Q Consensus 642 L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 721 (829)
|++|++++|.+....+ ..+..+++|++|++++|......|..++.+++|++|++++|......+..++.+++|++|
T Consensus 111 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVENQLQSLPD----GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCCccCH----HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 8888887776653222 223456777777777774333233345677777777777776443334445777777777
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCccccccccc
Q 003330 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSL 790 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 790 (829)
++++|......|..+..+++|++|++++|+.. +.+++|+.|++++|...+.+|..++.++..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 77776655544445677777777777776432 345567777777777667777777666554
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.2e-17 Score=169.54 Aligned_cols=199 Identities=21% Similarity=0.218 Sum_probs=98.0
Q ss_pred ceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCC-CCccccCCCc
Q 003330 566 KAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQ 643 (829)
Q Consensus 566 ~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~ 643 (829)
+++.|.+..+. ...+| ..|.++++|++|++.+|....... ..+.++++|++|++++|.++.++ ..+..+++|+
T Consensus 29 ~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCH---HHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 35555443332 23333 245566666666665554332211 12445566666666666665544 2355566666
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccc-cCCccccCcCCCcEEEeccccccccchhhccCCCCCC---
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM-KLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQ--- 719 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~--- 719 (829)
+|++++|.+....... ...+++|++|++++|.... .+|..+.++++|++|++++|......+..+..+++|+
T Consensus 104 ~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 104 KLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp EEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred EEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 6666655544322111 2345566666666554322 2455556666666666665543333333444444443
Q ss_pred -EEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccc-cCCCccccEeeccccc
Q 003330 720 -ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECS 775 (829)
Q Consensus 720 -~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 775 (829)
.|++++|. +..+|.......+|++|++++|. +..+|.. +..+++|+.|++++|+
T Consensus 180 l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 180 LSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 55555533 33333333334456666666543 3344433 3555666666666655
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=7e-17 Score=194.79 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=192.1
Q ss_pred cceEEEeeeCC-cccc-ccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003330 543 NAQIVSIHTGD-MREM-DWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 543 ~~~~lsi~~~~-~~~~-~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
..+.+.+.... ...+ +..-..+++|++|.|..+.. ....|..|.++++|++|++.+|......... ..+.++++|+
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~ 126 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALT 126 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCC
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCC
Confidence 35566665442 2222 11124578888888876654 3445888999999999999988755422111 2377889999
Q ss_pred eeeecccccCCCC--CCccccCCCceEEeeecccccccccccc----------------------ccCCccc------cc
Q 003330 621 SLWLEKVSISQLP--KSSIPLKKMQKISFVLCKINNSLDQSVV----------------------DLPKTLP------CL 670 (829)
Q Consensus 621 ~L~l~~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~~~~~~~~----------------------~~~~~~~------~L 670 (829)
+|++++|.+..++ ..+.++++|++|++++|.+....+..+. .....++ +|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 9999999988664 3588899999999998877543322211 0011122 38
Q ss_pred cccccccccccccCCcccc------------------------------------C--cCCCcEEEeccccccccchhhc
Q 003330 671 TELTFDHCDDLMKLPPSIC------------------------------------G--LQSLKNLSVTNCHSLQELPADI 712 (829)
Q Consensus 671 ~~L~L~~~~~~~~lp~~i~------------------------------------~--l~~L~~L~l~~~~~~~~lp~~l 712 (829)
+.|++++|......|..+. . .++|+.|++++|......|..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 9999999854433333222 1 2689999999988766667889
Q ss_pred cCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCc
Q 003330 713 GKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQ 792 (829)
Q Consensus 713 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 792 (829)
..+++|+.|++++|......|..+..+++|++|++++|......|..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 99999999999998877777888999999999999998665555778999999999999999854444456888999999
Q ss_pred eeccchhhhhhhhhhhhCCCceEEec
Q 003330 793 VICEEDVSWAWKDLEKTLPNLHVQVP 818 (829)
Q Consensus 793 L~~~~~~~~~~~~l~~~lp~L~~~~~ 818 (829)
|++++|...... .+|+|+....
T Consensus 367 L~Ls~N~l~~i~----~~~~L~~L~l 388 (844)
T 3j0a_A 367 LDLRDNALTTIH----FIPSIPDIFL 388 (844)
T ss_dssp EEEETCCSCCCS----SCCSCSEEEE
T ss_pred EECCCCCCCccc----CCCCcchhcc
Confidence 999988554322 2555655443
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=5.3e-17 Score=168.23 Aligned_cols=194 Identities=15% Similarity=0.056 Sum_probs=152.2
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCC
Q 003330 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 665 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 665 (829)
+..+++|+.|++.++... .+..+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+ ..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-----~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~----~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-----SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPN----GVFD 106 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-----CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCT----TTTT
T ss_pred cccccceeeeeeCCCCcc-----cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccCh----hHhc
Confidence 678899999999887643 3455788999999999999999875 78899999999999998764332 2335
Q ss_pred ccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 666 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
.+++|++|++++|......|..++.+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 68999999999996554445557899999999999987544444557899999999999987655445557899999999
Q ss_pred eccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceecc
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICE 796 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~ 796 (829)
++++|......|..+..+++|+.|++++|+..+. +++|+.++..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~ 230 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEW 230 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHH
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHH
Confidence 9999865544445579999999999999985443 4456666543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.3e-17 Score=187.62 Aligned_cols=223 Identities=13% Similarity=0.034 Sum_probs=177.5
Q ss_pred cccChhhhcCC----CCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeecccccc
Q 003330 580 YFLPPFIENME----KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNS 655 (829)
Q Consensus 580 ~~lp~~~~~l~----~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~ 655 (829)
..+|..+..+. +|++|++.+|...... ...+.++++|++|+|++|.++..++ +..+++|++|+|++|.+...
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC
Confidence 34555555554 8999999998765432 2357899999999999999987665 88999999999999986532
Q ss_pred ccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccccc
Q 003330 656 LDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR 735 (829)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~ 735 (829)
. ..++|++|++++|... .+|. ..+++|+.|++++|......|..++++++|+.|++++|......|..
T Consensus 96 ~---------~~~~L~~L~L~~N~l~-~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 96 L---------VGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp E---------ECTTCCEEECCSSCCC-CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred C---------CCCCcCEEECcCCcCC-CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 1 2489999999998644 4443 35789999999999877667778999999999999998877777777
Q ss_pred cc-CCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhhhhhhhhhCCCce
Q 003330 736 IC-ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLH 814 (829)
Q Consensus 736 ~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~ 814 (829)
+. .+++|++|+|++|. +..+|. ...+++|+.|++++|. +..+|..+..+++|+.|++++|.....+.....+|+|.
T Consensus 164 l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 76 79999999999975 555554 4569999999999999 66777789999999999999987666555556778887
Q ss_pred EEecccc
Q 003330 815 VQVPAKC 821 (829)
Q Consensus 815 ~~~~~~~ 821 (829)
.....++
T Consensus 241 ~L~l~~N 247 (487)
T 3oja_A 241 HFDLRGN 247 (487)
T ss_dssp EEECTTC
T ss_pred EEEcCCC
Confidence 7665544
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=2.3e-17 Score=189.73 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=103.3
Q ss_pred CcceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003330 542 FNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
...+.+.++...+..... .-..++++++|.|..+.. ....|..|.++++|++|++++|...... ...++++++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCSCC---HHHHTTCTTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCccCccC---HHHhccCCCCc
Confidence 356777777666554432 224578888888776654 3344567889999999999888654322 12367888999
Q ss_pred eeeecccccCC--CCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEE
Q 003330 621 SLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLS 698 (829)
Q Consensus 621 ~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 698 (829)
+|++++|.++. .|..+..+++|++|++++|......+ ...+..+++|++|++++|...+..|..++.+++|+.|+
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccC---HhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999998884 46678889999999999887433222 12235578888888888876666676666555444444
Q ss_pred ecc
Q 003330 699 VTN 701 (829)
Q Consensus 699 l~~ 701 (829)
+++
T Consensus 179 l~~ 181 (549)
T 2z81_A 179 LHL 181 (549)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-16 Score=176.39 Aligned_cols=220 Identities=18% Similarity=0.187 Sum_probs=154.9
Q ss_pred cceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 543 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
..+.+.+....+...+. -..+++++.|.|..+.. ..+| ++.+++|++|++.+|..... + ++++++|++|
T Consensus 43 ~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l--~~~~--~~~l~~L~~L~Ls~N~l~~~-----~-~~~l~~L~~L 111 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLTNL-----D-VTPLTKLTYL 111 (457)
T ss_dssp TCCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCC--SCCC--CTTCTTCSEEECCSSCCSCC-----C-CTTCTTCCEE
T ss_pred CCCEEEccCCCcccChh-hcccCCCCEEEccCCcC--CeEc--cccCCCCCEEECcCCCCcee-----e-cCCCCcCCEE
Confidence 35667776666555542 23567778777766543 3344 77888888888887765432 1 6678888888
Q ss_pred eecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccc
Q 003330 623 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 623 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 702 (829)
++++|.++.+| +..+++|++|++++|.+... + ...+++|+.|++++|..++.+ .++.+++|+.|++++|
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCcccee-c------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 88888888775 77788888888888876642 1 245788888888888766666 3778888888888887
Q ss_pred cccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCc
Q 003330 703 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 782 (829)
Q Consensus 703 ~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 782 (829)
. +..+| ++.+++|+.|++++|.... + .++.+++|++|++++|. +..+| +..+++|+.|++++|. +..+|
T Consensus 181 ~-l~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~-l~~~~- 249 (457)
T 3bz5_A 181 K-ITELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP-LTELD- 249 (457)
T ss_dssp C-CCCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC-
T ss_pred c-cceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCc-CCCcC-
Confidence 5 45565 7788888888888865433 3 37788888888888864 45576 7788888899988888 44454
Q ss_pred ccccccccCceecc
Q 003330 783 SVNSLKSLRQVICE 796 (829)
Q Consensus 783 ~l~~l~~L~~L~~~ 796 (829)
+..+++|+.|++.
T Consensus 250 -~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 250 -VSTLSKLTTLHCI 262 (457)
T ss_dssp -CTTCTTCCEEECT
T ss_pred -HHHCCCCCEEecc
Confidence 3345555544443
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.5e-16 Score=163.03 Aligned_cols=191 Identities=25% Similarity=0.264 Sum_probs=141.7
Q ss_pred cCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCceEEeeecccc
Q 003330 575 SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKIN 653 (829)
Q Consensus 575 ~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~ 653 (829)
+.+....+|..+. ++|+.|++.+|....... ..+.++++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 24 ~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPS---KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCSCCCT---TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred cCCCCCccCCCCC--CCCCEEECcCCCCCeeCH---HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC
Confidence 3333556665443 579999998886543321 2477889999999999999988877 467899999999988765
Q ss_pred ccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcc
Q 003330 654 NSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTL 732 (829)
Q Consensus 654 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~l 732 (829)
.... ..+..+++|++|++++|......|..+..+++|++|++++|.. ..+| ..+..+++|++|++++|......
T Consensus 99 ~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 99 ALPI----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCT----TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCH----hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEeC
Confidence 4322 2335688899999998865444455678899999999999864 4444 45788999999999987655444
Q ss_pred cccccCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeecccccc
Q 003330 733 PARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 733 p~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 776 (829)
+..+..+++|++|++++| .+..+|. .+..+++|+.|++++|+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 445788899999999987 4455655 478889999999999884
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=187.42 Aligned_cols=241 Identities=18% Similarity=0.203 Sum_probs=178.4
Q ss_pred ceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceee
Q 003330 544 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 623 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 623 (829)
.+.+.+....+..++.....+ +++.|.+..+.. ..+|. ..+++|+.|++.+|...... ....+++|++|+
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~~-----~~~~~~~L~~L~ 353 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLD 353 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCBC-----CCCBCTTCCEEE
T ss_pred ccEEEecCccchhhhhhhccC-CccEEeeccCcc--cccCc--ccccccCEEeCcCCcccccc-----ccccCCCCCEEe
Confidence 445555544444333222333 666666655543 35554 46777888877776543221 125788999999
Q ss_pred ecccccCCC---CCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEEEe
Q 003330 624 LEKVSISQL---PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSV 699 (829)
Q Consensus 624 l~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l 699 (829)
+++|.++.+ |..+..+++|++|++++|.+...... ...+++|+.|++++|......| ..+..+++|++|++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 999988765 55677889999999998876543222 3458899999999986555444 46889999999999
Q ss_pred ccccccccchhhccCCCCCCEEecccCCcC-CcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCc
Q 003330 700 TNCHSLQELPADIGKMKSLQILRLYACPHL-RTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW 778 (829)
Q Consensus 700 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 778 (829)
++|......|..+..+++|++|++++|... ..+|..+..+++|++|++++|......|..+..+++|++|++++|.+.+
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 999877778888899999999999998765 4688889999999999999986655558889999999999999998555
Q ss_pred cCCcccccccccCceeccchh
Q 003330 779 SLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 779 ~lp~~l~~l~~L~~L~~~~~~ 799 (829)
..|..+..+++|+.|++.+|.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhhcccCCcEEEecCCc
Confidence 555668889999999987763
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=2.1e-16 Score=176.03 Aligned_cols=251 Identities=15% Similarity=0.150 Sum_probs=173.0
Q ss_pred cceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 543 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
..+++.+....+...+ -..+++|+.|.+..+.. ..+| ++++++|++|++.+|..... + ++.+++|++|
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l--~~~~--~~~l~~L~~L~L~~N~l~~l-----~-~~~l~~L~~L 132 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLTKL-----D-VSQNPLLTYL 132 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC--SCCC--CTTCTTCCEEECCSSCCSCC-----C-CTTCTTCCEE
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC--ceee--cCCCCcCCEEECCCCcCCee-----c-CCCCCcCCEE
Confidence 4677777777666654 23567888888766553 3344 78899999999988865432 2 6788899999
Q ss_pred eecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccc
Q 003330 623 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 623 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 702 (829)
++++|.++.++ +..+++|++|++++|......+ ...+++|+.|++++|. +..+| ++.+++|+.|++++|
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSS
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCC
Confidence 99999988875 7788899999998885443331 2457889999999884 55566 788899999999987
Q ss_pred cccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCc-cccCCCc-------cccEeecccc
Q 003330 703 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP-QGIGNLI-------RLEKIDMREC 774 (829)
Q Consensus 703 ~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~-------~L~~L~l~~~ 774 (829)
.. ..+ .++.+++|+.|++++|... .+| +..+++|++|++++|. +..+| ..+..+. +|+.|++++|
T Consensus 202 ~l-~~~--~l~~l~~L~~L~Ls~N~l~-~ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 202 NI-TKL--DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp CC-SCC--CCTTCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred cC-Cee--ccccCCCCCEEECcCCccc-ccC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 64 444 3788899999999986544 466 7788999999999864 44444 2233333 4556666777
Q ss_pred ccCccCCcccccccccCceeccchhhhhhhhhhhhCCCceEEecccccccccc
Q 003330 775 SQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFSLDWL 827 (829)
Q Consensus 775 ~~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~l~~l 827 (829)
..++.+| +..+++|+.|++++|..... +....++|+......|.+|..|
T Consensus 275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 275 TQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp TTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCCCCTTCTTCCEE
T ss_pred ccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEechhhcccCCEE
Confidence 6666666 45778888888887753321 1112344444444455554443
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.1e-16 Score=167.23 Aligned_cols=197 Identities=19% Similarity=0.153 Sum_probs=115.1
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
+++++.+.+.. +....+|..+. ++++.|++.+|....... ..+.++++|++|++++|.++.++.. ..+++|+
T Consensus 9 l~~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cCCccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 44555555433 33445565443 567777777665543321 2355667777777777777766554 5666777
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEec
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRL 723 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 723 (829)
+|++++|.+.. ++.....+++|++|++++|......|..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 81 ~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 81 TLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp EEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 77777666542 2222345666777777766433322345666777777777766533333344566677777777
Q ss_pred ccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccc
Q 003330 724 YACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 724 ~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 775 (829)
++|. +..+|.. +..+++|++|++++| .+..+|..+..+++|+.|++++|+
T Consensus 156 ~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 156 ANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 6644 3344443 456667777777664 445666666666667777777666
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=2.9e-16 Score=185.42 Aligned_cols=273 Identities=16% Similarity=0.112 Sum_probs=147.4
Q ss_pred ceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccc-cCCC-----cccCCc
Q 003330 544 AQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAA-LGNF-----SVCSNL 616 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~-~~~~-----~~l~~l 616 (829)
.+.+.+....+..... .-..+++++.|.+..+.. ....|..|..+++|++|++.++...... ...+ ..+..+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4555555444433221 123567888888776654 3445667888888888888765432110 0011 146678
Q ss_pred cccceeeecccccCCCCCC-ccccCCCceEEeeeccccccc------------------------cccccccCCcccccc
Q 003330 617 TNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSL------------------------DQSVVDLPKTLPCLT 671 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~------------------------~~~~~~~~~~~~~L~ 671 (829)
++|++|++++|.+..+++. +..+++|++|++++|.+.... ....+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 8888888888888876554 777888888888876532110 001111223344455
Q ss_pred ccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcC--CcccccccCCCCCCEEecc
Q 003330 672 ELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHL--RTLPARICELVCLKYLNIS 748 (829)
Q Consensus 672 ~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l--~~lp~~~~~l~~L~~L~l~ 748 (829)
.|++++|.....+| ..+.++++|++|++++|......+..+..+++|+.|++++|... +.+|..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 55555544333333 33445555555555554433333344455555555555554322 3455566666666666666
Q ss_pred CCcCCCCCccccCCCccccEeeccccccCccC-----C----cccccccccCceeccchhhhhhhh-hhhhCCCceEEec
Q 003330 749 QCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL-----P----KSVNSLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVP 818 (829)
Q Consensus 749 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~l-----p----~~l~~l~~L~~L~~~~~~~~~~~~-l~~~lp~L~~~~~ 818 (829)
+|......|..+..+++|+.|++++|.+ ..+ | ..+..+++|+.|++++|.....+. ..+.+++|+....
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 6543322223356666677777776663 222 1 125566667777766664433322 2235566655443
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=2.6e-17 Score=189.37 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=120.2
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCc
Q 003330 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQ 643 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 643 (829)
+.++.|.|..+.. ....|..|.++++|++|++.+|....... ..+.++++|++|++++|.+..+++. +..+++|+
T Consensus 26 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCcc-CccChhhhhcCCcccEEECCCCCcCccCh---hhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 6788888877654 33446789999999999999987654332 3478899999999999999988876 88999999
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 722 (829)
+|++++|.+.... .+.....+++|++|++++|..++.+| ..+.++++|++|++++|......|..++.+++|++|+
T Consensus 102 ~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 102 YLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EEECCCCcccccc---hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999876421 12234678999999999998677776 5799999999999999987666777766655544444
Q ss_pred ccc
Q 003330 723 LYA 725 (829)
Q Consensus 723 l~~ 725 (829)
+++
T Consensus 179 l~~ 181 (549)
T 2z81_A 179 LHL 181 (549)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.5e-17 Score=176.48 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=185.0
Q ss_pred cceEEEeeeCCcccccc-ccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 543 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~-~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
+.+.+.++...+..... .-..+++|+.|.|..+.. ...++ +..+++|++|++.+|.... +..+++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~Ls~n~l~~--------l~~~~~L~~ 103 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD-LESLSTLRTLDLNNNYVQE--------LLVGPSIET 103 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--EEEEE-ETTCTTCCEEECCSSEEEE--------EEECTTCCE
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--Ccchh-hhhcCCCCEEECcCCcccc--------ccCCCCcCE
Confidence 46677776666555432 224678899888876653 33444 8999999999999886443 224589999
Q ss_pred eeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccc-cCcCCCcEEEec
Q 003330 622 LWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI-CGLQSLKNLSVT 700 (829)
Q Consensus 622 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~l~ 700 (829)
|++++|.++.++.. .+++|++|++++|.+....+.. +..+++|++|++++|......|..+ ..+++|++|+++
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 99999999987754 3689999999999876543322 3558999999999996655555555 478999999999
Q ss_pred cccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccC-cc
Q 003330 701 NCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQI-WS 779 (829)
Q Consensus 701 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~-~~ 779 (829)
+|. +..+|. ...+++|++|++++|. +..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|++. ..
T Consensus 178 ~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 178 YNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCc-Cccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 987 555553 4469999999999965 5567777999999999999997 56688999999999999999999966 57
Q ss_pred CCcccccccccCceeccchhhh
Q 003330 780 LPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 780 lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
+|..+..+++|+.+++.++...
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccceEEECCCchhc
Confidence 8888899999999998755433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.2e-17 Score=176.89 Aligned_cols=231 Identities=15% Similarity=0.116 Sum_probs=172.9
Q ss_pred ccChhhhcCCCCceEEEccccCCccccCCCcccC-------CccccceeeecccccC-CCCCCc--cccCCCceEEeeec
Q 003330 581 FLPPFIENMEKLRALIVINYSTSNAALGNFSVCS-------NLTNLRSLWLEKVSIS-QLPKSS--IPLKKMQKISFVLC 650 (829)
Q Consensus 581 ~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~L~~~ 650 (829)
.+|..+... |+.|++.+|........ ..+. ++++|++|++++|.++ .+|..+ ..+++|++|++++|
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIP--SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECB--HHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcC--HHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC
Confidence 668766665 88888888765332111 1122 5889999999999998 688876 88999999999999
Q ss_pred cccccccccccccC-CccccccccccccccccccCCccccCcCCCcEEEecccccccc--chhhc--cCCCCCCEEeccc
Q 003330 651 KINNSLDQSVVDLP-KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE--LPADI--GKMKSLQILRLYA 725 (829)
Q Consensus 651 ~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~~l--~~l~~L~~L~l~~ 725 (829)
.+... +..+..+. ..+++|++|++++|......|..++++++|++|++++|..... +|..+ ..+++|++|++++
T Consensus 132 ~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 132 SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 88764 32221110 1138999999999976555568899999999999999986554 34455 8999999999999
Q ss_pred CCcCC--cccc-cccCCCCCCEEeccCCcCCCCCc-cccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003330 726 CPHLR--TLPA-RICELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 726 ~~~l~--~lp~-~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
|.... .++. .+..+++|++|++++|......| ..+..+++|++|++++|. +..+|..+. ++|+.|++++|...
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC
Confidence 76442 3332 34678999999999986555443 346778999999999999 569998776 89999999999766
Q ss_pred hhhhhhhhCCCceEEeccc
Q 003330 802 AWKDLEKTLPNLHVQVPAK 820 (829)
Q Consensus 802 ~~~~l~~~lp~L~~~~~~~ 820 (829)
..+. ...+|+|+.....+
T Consensus 288 ~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCC-TTTSCEEEEEECTT
T ss_pred CChh-HhhCCCCCEEeccC
Confidence 6655 45788887765544
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2e-16 Score=166.97 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=151.6
Q ss_pred cCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKM 642 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 642 (829)
.+++++.|.+..+. ...+| .+..+++|++|++.+|..... ..+.++++|++|++++|.++.++ .+..+++|
T Consensus 39 ~l~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 39 DLDGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDL-----APLKNLTKITELELSGNPLKNVS-AIAGLQSI 109 (308)
T ss_dssp HHHTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCC-----GGGTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred HcCCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCC-----hhHccCCCCCEEEccCCcCCCch-hhcCCCCC
Confidence 45677877776554 44555 588899999999988865432 23778899999999999998876 58889999
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEe
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 722 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 722 (829)
++|++++|.+.... . ...+++|+.|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|+.|+
T Consensus 110 ~~L~l~~n~l~~~~-----~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 110 KTLDLTSTQITDVT-----P-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp CEEECTTSCCCCCG-----G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred CEEECCCCCCCCch-----h-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEE
Confidence 99999998876521 1 3568899999999984 555655 8889999999999986 455665 88999999999
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcc
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 783 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 783 (829)
+++|.. ..++. +..+++|++|++++|. +..++ .+..+++|+.|++++|+ +...|..
T Consensus 180 l~~n~l-~~~~~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~~ 235 (308)
T 1h6u_A 180 ADDNKI-SDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQT-ITNQPVF 235 (308)
T ss_dssp CCSSCC-CCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEE-EECCCEE
T ss_pred CCCCcc-CcChh-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCe-eecCCee
Confidence 998654 44554 7888999999999864 55565 38889999999999998 5555543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=6.4e-16 Score=159.88 Aligned_cols=195 Identities=19% Similarity=0.223 Sum_probs=152.4
Q ss_pred CCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCC-CccccCCCceEEeeeccccccccccccccCCcccc
Q 003330 591 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 669 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 669 (829)
+++.+++.++...... .. + .++|+.|++++|.++.++. .+..+++|++|++++|.+..... ..+..+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~---~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~----~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SN---I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA----GIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCC-SC---C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT----TTTSSCTT
T ss_pred CCCEEEccCCCCCccC-CC---C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh----hhhcCCCC
Confidence 5778888776544321 11 1 2579999999999998886 58899999999999988764322 23356899
Q ss_pred ccccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEec
Q 003330 670 LTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNI 747 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l 747 (829)
|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|++|++++|... .+|. .+..+++|++|++
T Consensus 87 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEe
Confidence 9999999986 44454 55789999999999998765555667899999999999997644 4554 4789999999999
Q ss_pred cCCcCCCCCcc-ccCCCccccEeeccccccCccCCc-ccccccccCceeccchh
Q 003330 748 SQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDV 799 (829)
Q Consensus 748 ~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~ 799 (829)
++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++.+|.
T Consensus 165 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 165 YNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCc-CcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 9975 445554 58899999999999998 556665 57789999999987764
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3.7e-16 Score=163.16 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=118.3
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCC-CCccccCCCceEEeeeccccccccccccccC
Q 003330 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLDQSVVDLP 664 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 664 (829)
+.++++++.+++.++...... . .+ .++|+.|++++|.++.++ ..+..+++|++|++++|.+..... .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~---~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-P---DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------D 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-S---CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC------C
T ss_pred ccccCCccEEECCCCCCCcCC-C---CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC------C
Confidence 455666777766655433211 1 11 246677777777776554 346667777777777666543211 1
Q ss_pred CccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCE
Q 003330 665 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 744 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 744 (829)
..+++|+.|++++| .+..+|..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 34667777777766 34566666667777777777766543333355667777777777765443333333566677777
Q ss_pred EeccCCcCCCCCccc-cCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003330 745 LNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 745 L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
|++++| .+..+|.. +..+++|+.|++++|. +..+|..+..+.+|+.+++.+|
T Consensus 153 L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred EECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 777765 34455543 4567777777777776 5566766666666776665544
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.8e-16 Score=163.28 Aligned_cols=210 Identities=17% Similarity=0.151 Sum_probs=164.2
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCC-CccccCCCceEEeeecccccccc
Q 003330 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLD 657 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~~ 657 (829)
...+|..+. ++|++|++.+|....... ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+.....
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 445665443 589999999987655432 247789999999999999998776 58889999999999988764332
Q ss_pred ccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccc-cchhhccCCCCCCEEecccCCcCCcccccc
Q 003330 658 QSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ-ELPADIGKMKSLQILRLYACPHLRTLPARI 736 (829)
Q Consensus 658 ~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 736 (829)
..+..+++|++|++++|......+..++++++|++|++++|.... .+|..+.++++|++|++++|......+..+
T Consensus 94 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 94 ----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp ----TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ----hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 334568999999999986544444478999999999999987544 368899999999999999987665555666
Q ss_pred cCCCCCC----EEeccCCcCCCCCccccCCCccccEeeccccccCccCCc-ccccccccCceeccchh
Q 003330 737 CELVCLK----YLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDV 799 (829)
Q Consensus 737 ~~l~~L~----~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~ 799 (829)
..+++|+ +|++++| .+..+|.......+|+.|++++|. +..+|. .+..+++|+.|++++|.
T Consensus 170 ~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 6666666 8999996 455666666666799999999999 566665 46789999999988663
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.1e-16 Score=159.16 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=145.2
Q ss_pred CCCceEEEccccCCccccCCCcccCCccccceeeecccc-cCCCCC-CccccCCCceEEeee-ccccccccccccccCCc
Q 003330 590 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQLPK-SSIPLKKMQKISFVL-CKINNSLDQSVVDLPKT 666 (829)
Q Consensus 590 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~ 666 (829)
++|++|++.+|....... ..+.++++|++|++++|. ++.++. .+..+++|++|++++ |.+....+ ..+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~----~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP----DALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT----TSEEC
T ss_pred CcccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH----HHhCC
Confidence 378888888876554332 246678888888888886 887776 477888888888887 66543222 22345
Q ss_pred cccccccccccccccccCCccccCcCCCc---EEEeccccccccch-hhccCCCCCC-EEecccCCcCCcccccccCCCC
Q 003330 667 LPCLTELTFDHCDDLMKLPPSICGLQSLK---NLSVTNCHSLQELP-ADIGKMKSLQ-ILRLYACPHLRTLPARICELVC 741 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~lp-~~l~~l~~L~-~L~l~~~~~l~~lp~~~~~l~~ 741 (829)
+++|++|++++|. +..+|. +..+++|+ +|++++|..+..+| ..+.++++|+ .|++++|. +..+|......++
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTK 180 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCE
T ss_pred CCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCC
Confidence 7888999998885 555776 88888888 99999984566666 4588899999 99998865 4477766555588
Q ss_pred CCEEeccCCcCCCCCcc-ccCCC-ccccEeeccccccCccCCcccccccccCceeccch
Q 003330 742 LKYLNISQCVSLSCLPQ-GIGNL-IRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~-~l~~l-~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
|+.|++++|..+..+|. .+..+ ++|+.|++++|. +..+|.. .+++|+.|++.++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCc
Confidence 99999999765667654 47888 899999999988 6677765 5777888876654
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.7e-17 Score=176.41 Aligned_cols=225 Identities=16% Similarity=0.206 Sum_probs=137.1
Q ss_pred ChhhhcC--CCCceEEEccccCCccccCCCcccCCccccceeeecccccCC--CCCCccccCCCceEEeeeccccccccc
Q 003330 583 PPFIENM--EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKINNSLDQ 658 (829)
Q Consensus 583 p~~~~~l--~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~~~~ 658 (829)
|..+..+ ++++.|++.++...... ..+.++++|++|++++|.+.. +|..+..+++|++|++++|.+......
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 3445555 67777777666543322 224466777777777777653 555566777777777777764432222
Q ss_pred cccccCCccccccccccccccccc--cCCccccCcCCCcEEEecccccccc--chhhccCCC-CCCEEecccCC-cC--C
Q 003330 659 SVVDLPKTLPCLTELTFDHCDDLM--KLPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMK-SLQILRLYACP-HL--R 730 (829)
Q Consensus 659 ~~~~~~~~~~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--lp~~l~~l~-~L~~L~l~~~~-~l--~ 730 (829)
. ...+++|++|++++|..++ .+|..+.++++|++|++++|..+.. ++..+..++ +|++|++++|. .+ .
T Consensus 137 ~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 T----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp H----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred H----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 2 2346777777777774444 2555566777777777777733332 556666777 77777777763 22 3
Q ss_pred cccccccCCCCCCEEeccCCcCCC-CCccccCCCccccEeeccccccCc-cCCcccccccccCceeccchhhh-hhhhhh
Q 003330 731 TLPARICELVCLKYLNISQCVSLS-CLPQGIGNLIRLEKIDMRECSQIW-SLPKSVNSLKSLRQVICEEDVSW-AWKDLE 807 (829)
Q Consensus 731 ~lp~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~~~~~~~~-~~~~l~ 807 (829)
.+|..+..+++|++|++++|..++ ..+..+..+++|++|++++|..+. .....+.++++|+.|++.++... .+..+.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~ 292 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHH
Confidence 455666677777777777776333 455566777777777777775111 11124566777777777666222 234444
Q ss_pred hhCCCceE
Q 003330 808 KTLPNLHV 815 (829)
Q Consensus 808 ~~lp~L~~ 815 (829)
..+|+|++
T Consensus 293 ~~l~~L~l 300 (336)
T 2ast_B 293 EALPHLQI 300 (336)
T ss_dssp HHSTTSEE
T ss_pred hhCcceEE
Confidence 55777765
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=2.9e-18 Score=187.68 Aligned_cols=239 Identities=10% Similarity=0.062 Sum_probs=164.0
Q ss_pred cCCceEEEEEeccCCCc---cccChhhhcCCCCceEEEccccCCccccCCC-------cccCCccccceeeecccccCC-
Q 003330 563 EFPKAEVLILNFSSTEE---YFLPPFIENMEKLRALIVINYSTSNAALGNF-------SVCSNLTNLRSLWLEKVSISQ- 631 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~---~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~i~~- 631 (829)
.+++++.|.|..+.... ..++..+.++++|++|++.+|.........+ ..+..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45667777766554311 1234457788899999988875432211111 123677889999999998875
Q ss_pred ----CCCCccccCCCceEEeeeccccccccccccccCCcc---------cccccccccccccc-ccCC---ccccCcCCC
Q 003330 632 ----LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL---------PCLTELTFDHCDDL-MKLP---PSICGLQSL 694 (829)
Q Consensus 632 ----lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~---------~~L~~L~L~~~~~~-~~lp---~~i~~l~~L 694 (829)
+|..+..+++|++|+|++|.+.......+......+ ++|++|++++|... ..+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 666778888999999998887533222222222223 78999999988643 2344 456778899
Q ss_pred cEEEeccccccc-----cchhhccCCCCCCEEecccCCcC----CcccccccCCCCCCEEeccCCcCCCC----Ccccc-
Q 003330 695 KNLSVTNCHSLQ-----ELPADIGKMKSLQILRLYACPHL----RTLPARICELVCLKYLNISQCVSLSC----LPQGI- 760 (829)
Q Consensus 695 ~~L~l~~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l~~----lp~~l- 760 (829)
++|++++|.... ..|..+..+++|++|+|++|... ..+|..+..+++|++|+|++|..... +|..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999886432 23337788899999999987753 66777888889999999998764332 46666
Q ss_pred -CCCccccEeeccccccCc----cCCccc-ccccccCceeccchhhh
Q 003330 761 -GNLIRLEKIDMRECSQIW----SLPKSV-NSLKSLRQVICEEDVSW 801 (829)
Q Consensus 761 -~~l~~L~~L~l~~~~~~~----~lp~~l-~~l~~L~~L~~~~~~~~ 801 (829)
+.+++|++|+|++|.+.. .+|..+ .++++|+.|++.+|...
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 448889999999998444 377777 56788999998877433
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=169.23 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=134.3
Q ss_pred cCCCCceEEEccccCCccccCCCccc-CCccccceeeecccccCCCCC-----CccccCCCceEEeeecccccccccccc
Q 003330 588 NMEKLRALIVINYSTSNAALGNFSVC-SNLTNLRSLWLEKVSISQLPK-----SSIPLKKMQKISFVLCKINNSLDQSVV 661 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~i~~lp~-----~~~~l~~L~~L~L~~~~~~~~~~~~~~ 661 (829)
.+++|++|++.+|.........+ + ..+++|++|++++|.+..... .+..+++|++|++++|.+....+.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--- 163 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLP--LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE--- 163 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCS--SSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT---
T ss_pred ccCceeEEEeeCCEeccchhhhh--hhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH---
Confidence 45678888888776544332221 1 677888888888888775322 234577888888888776543322
Q ss_pred ccCCcccccccccccccccccc--C--CccccCcCCCcEEEeccccccccchh----hccCCCCCCEEecccCCcCCccc
Q 003330 662 DLPKTLPCLTELTFDHCDDLMK--L--PPSICGLQSLKNLSVTNCHSLQELPA----DIGKMKSLQILRLYACPHLRTLP 733 (829)
Q Consensus 662 ~~~~~~~~L~~L~L~~~~~~~~--l--p~~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~~~~~l~~lp 733 (829)
.+..+++|++|+|++|...+. + +..+..+++|++|++++|. ++.+|. .+..+++|++|++++|......|
T Consensus 164 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 164 -QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp -SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred -HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 234578888888888764431 2 2234678888888888875 344443 24677888888888877666557
Q ss_pred ccccCC---CCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 734 ARICEL---VCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 734 ~~~~~l---~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
..+..+ ++|++|++++| .++.+|..+. ++|++|++++|. +..+|. +..+++|+.|++++|.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred hhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 666665 58888888875 4457777664 788888888887 556554 5677888888877764
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=166.94 Aligned_cols=206 Identities=12% Similarity=0.082 Sum_probs=156.8
Q ss_pred CCceEEEEEeccCCCccccChhh--hcCCCCceEEEccccCCccccCC-CcccCCccccceeeecccccCCCCC-Ccccc
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFI--ENMEKLRALIVINYSTSNAALGN-FSVCSNLTNLRSLWLEKVSISQLPK-SSIPL 639 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~--~~l~~Lr~L~l~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l 639 (829)
+++++.|.+..+.. ....|..+ .++++|++|++.+|......... ...+..+++|++|++++|.+..++. .+..+
T Consensus 90 ~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 46688888877765 44566666 89999999999998765421100 0123478999999999999997764 58899
Q ss_pred CCCceEEeeeccccccccccccccCCccccccccccccccccccCCc----cccCcCCCcEEEeccccccccchhhccCC
Q 003330 640 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP----SICGLQSLKNLSVTNCHSLQELPADIGKM 715 (829)
Q Consensus 640 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~----~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 715 (829)
++|++|++++|++..............+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999986532111112223568999999999985 444443 24788999999999998666668777776
Q ss_pred ---CCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecccccc
Q 003330 716 ---KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 716 ---~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
++|++|++++|.. ..+|..+. ++|++|++++| .+..+|. +..+++|+.|++++|++
T Consensus 248 ~~~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 248 MWSSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred cCcCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 6999999999654 47888774 89999999996 4556665 78899999999999984
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.4e-15 Score=160.32 Aligned_cols=192 Identities=16% Similarity=0.259 Sum_probs=121.2
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCC
Q 003330 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 665 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 665 (829)
+.++++|+.|++.++.... ++.+..+++|++|++++|.+..++. +..+++|++|++++|.+... + ...
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~-----~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-----IEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-S-----AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-----CTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-G-----GGT
T ss_pred HHHcCCcCEEEeeCCCccC-----chhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-h-----hhc
Confidence 4456677777776664332 2345666777777777777776666 66777777777777765432 1 124
Q ss_pred ccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 666 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
.+++|+.|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|+.|++++|. +..++. +..+++|+.|
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTL 178 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEE
Confidence 46777777777764 444543 6777777777777765 344443 6677777777777754 334444 6677777777
Q ss_pred eccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchh
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
++++| .+..++. +..+++|++|++++|. +..++ .+..+++|+.|++++|.
T Consensus 179 ~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCe
Confidence 77775 3444543 6667777777777776 45555 26667777777766654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=1.3e-17 Score=182.41 Aligned_cols=243 Identities=9% Similarity=0.108 Sum_probs=180.8
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCC-cccCCccccceeeecccccCC----CCCCc-------cccCCCceEE
Q 003330 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQ----LPKSS-------IPLKKMQKIS 646 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~----lp~~~-------~~l~~L~~L~ 646 (829)
...++..+..+++|++|++.+|.........+ ..+.++++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 45677889999999999999987654332222 236789999999999986653 34433 6789999999
Q ss_pred eeeccccccccccccccCCcccccccccccccccccc----CCccccCc---------CCCcEEEecccccc-ccch---
Q 003330 647 FVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMK----LPPSICGL---------QSLKNLSVTNCHSL-QELP--- 709 (829)
Q Consensus 647 L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----lp~~i~~l---------~~L~~L~l~~~~~~-~~lp--- 709 (829)
|++|.+.......++.....+++|++|+|++|..... ++..+..+ ++|++|++++|... ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999887643333333445689999999999975332 33344445 89999999998754 3445
Q ss_pred hhccCCCCCCEEecccCCcCC-----cccccccCCCCCCEEeccCCcCC----CCCccccCCCccccEeeccccccCcc-
Q 003330 710 ADIGKMKSLQILRLYACPHLR-----TLPARICELVCLKYLNISQCVSL----SCLPQGIGNLIRLEKIDMRECSQIWS- 779 (829)
Q Consensus 710 ~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~l~~~~~~~~- 779 (829)
..+..+++|++|++++|.... .+|..+..+++|++|+|++|... ..+|..+..+++|++|+|++|.+...
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 567789999999999986542 34447889999999999998653 56788899999999999999995443
Q ss_pred ---CCcccc--cccccCceeccchhhhh-----hhh-hhhhCCCceEEecccc
Q 003330 780 ---LPKSVN--SLKSLRQVICEEDVSWA-----WKD-LEKTLPNLHVQVPAKC 821 (829)
Q Consensus 780 ---lp~~l~--~l~~L~~L~~~~~~~~~-----~~~-l~~~lp~L~~~~~~~~ 821 (829)
+|..+. .+++|+.|++++|.... ... +...+|+|+.....+|
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 566663 38999999999885554 333 3356899988776654
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=4.2e-15 Score=170.50 Aligned_cols=224 Identities=22% Similarity=0.189 Sum_probs=152.4
Q ss_pred CcceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccce
Q 003330 542 FNAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 621 (829)
Q Consensus 542 ~~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 621 (829)
.+.+.+.+....+..++. .+++|+.|.|+.+. ...+|. .+++|++|++.+|..... +. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l-----~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTHL-----PA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCCC-----CC--CCTTCCE
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCCC-----CC--CCCCcCE
Confidence 457888888777766554 56888888877665 456776 678999999988765432 11 5678888
Q ss_pred eeecccccCCCCCCccccCCCceEEeeecccccccccccc-------------ccCCccccccccccccccccccCCccc
Q 003330 622 LWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVV-------------DLPKTLPCLTELTFDHCDDLMKLPPSI 688 (829)
Q Consensus 622 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~-------------~~~~~~~~L~~L~L~~~~~~~~lp~~i 688 (829)
|++++|.++.+|.. +++|++|++++|.+... +.... .++..+++|+.|++++|. +..+|..
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~~- 199 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTL- 199 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCC-
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCCc-
Confidence 88888888888864 37888888888876541 11100 011123555666665553 3344432
Q ss_pred cCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccE
Q 003330 689 CGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEK 768 (829)
Q Consensus 689 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 768 (829)
+++|+.|++++|. +..+|. .+++|+.|++++| .+..+| ..+++|++|++++| .+..+|. .+++|+.
T Consensus 200 --~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 --PSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLS 265 (622)
T ss_dssp --CTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred --cchhhEEECcCCc-ccccCC---CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcE
Confidence 3556666666654 344443 2477888888886 445566 45688999999886 5667776 6788999
Q ss_pred eeccccccCccCCcccccccccCceeccchhhh
Q 003330 769 IDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 769 L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
|++++|. +..+|..+.++++|+.|++++|...
T Consensus 266 L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 266 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSSC-CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred EeCCCCC-CCcCCHHHhhccccCEEEecCCCCC
Confidence 9999998 5688988999999999998887443
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=2.9e-15 Score=153.10 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=113.0
Q ss_pred CCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCC-CccccCCCceEEeeeccccccccccccccCCcccc
Q 003330 591 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 669 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 669 (829)
+.+.+++.++....... .+ .++|+.|++++|.+..++. .+..+++|++|+|++|.+....+. .+..+++
T Consensus 15 ~~~~l~~~~~~l~~~p~----~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS----GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTE 84 (251)
T ss_dssp GGTEEECTTCCCSSCCS----CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTT
T ss_pred CCeEEecCCCCccccCC----CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh----HhccCCc
Confidence 45667766654332211 11 2577888888888876665 377788888888887776543322 2345777
Q ss_pred ccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEecc
Q 003330 670 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNIS 748 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~ 748 (829)
|++|+|++|......+..+..+++|++|++++|.. ..+| ..+..+++|++|++++|......+..+..+++|++|+|+
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 88888888754433345567788888888887754 3444 445778888888888764433333357777888888888
Q ss_pred CCcCCCCCccccCCCccccEeecccccc
Q 003330 749 QCVSLSCLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 749 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
+|......|..+..+++|+.|++++|+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 7644333333577778888888888774
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=9.1e-15 Score=167.74 Aligned_cols=103 Identities=22% Similarity=0.199 Sum_probs=46.8
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEec
Q 003330 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 747 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 747 (829)
++|+.|++++| .+..+|.. +++|+.|++++|. ++.+| ..+++|+.|++++| .+..+|. .+++|+.|+|
T Consensus 201 ~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred chhhEEECcCC-cccccCCC---CCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeC
Confidence 44555555554 23334421 2445555555443 33344 23345555555553 2333443 3445555555
Q ss_pred cCCcCCCCCccccCCCccccEeeccccccCccCCcc
Q 003330 748 SQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 783 (829)
Q Consensus 748 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 783 (829)
++| .+..+|..+..+++|+.|+|++|++.+..|..
T Consensus 269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 269 YRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 553 23344555555555555555555544333333
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.5e-16 Score=170.60 Aligned_cols=222 Identities=13% Similarity=0.114 Sum_probs=174.7
Q ss_pred CCceEEEccccCCccccCCCcccCCc--cccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccc
Q 003330 591 KLRALIVINYSTSNAALGNFSVCSNL--TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP 668 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 668 (829)
.++.|++.++.... ..+..+ ++++.|++++|.+...+..+..+++|++|++++|.+... .++.....++
T Consensus 48 ~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBC
T ss_pred hheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCC
Confidence 46778887765432 224455 789999999999998888888899999999999876532 1223345689
Q ss_pred cccccccccccccccCCccccCcCCCcEEEeccccccc--cchhhccCCCCCCEEecccCCcCCc--ccccccCCC-CCC
Q 003330 669 CLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRT--LPARICELV-CLK 743 (829)
Q Consensus 669 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~l~~--lp~~~~~l~-~L~ 743 (829)
+|++|++++|......|..++.+++|++|++++|..+. .++..+.++++|++|++++|..+.. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 99999999997666778889999999999999996555 3777788999999999999844543 677788999 999
Q ss_pred EEeccCCc-CC--CCCccccCCCccccEeeccccc-cCccCCcccccccccCceeccchhhhhhhh--hhhhCCCceEEe
Q 003330 744 YLNISQCV-SL--SCLPQGIGNLIRLEKIDMRECS-QIWSLPKSVNSLKSLRQVICEEDVSWAWKD--LEKTLPNLHVQV 817 (829)
Q Consensus 744 ~L~l~~~~-~l--~~lp~~l~~l~~L~~L~l~~~~-~~~~lp~~l~~l~~L~~L~~~~~~~~~~~~--l~~~lp~L~~~~ 817 (829)
+|++++|. .+ ..+|..+..+++|++|++++|. .....+..+..+++|+.|++++|....... ..+.+|+|+...
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 99999985 33 3567778889999999999999 445777788999999999998885333221 234689998887
Q ss_pred cccc
Q 003330 818 PAKC 821 (829)
Q Consensus 818 ~~~~ 821 (829)
..+|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 7766
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.7e-15 Score=153.57 Aligned_cols=198 Identities=14% Similarity=0.167 Sum_probs=153.7
Q ss_pred cccceeeecccccCCCCC-CccccCCCceEEeeecc-ccccccccccccCCccccccccccccccccccCC-ccccCcCC
Q 003330 617 TNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCK-INNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQS 693 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~ 693 (829)
++|++|++++|.++.+|. .+..+++|++|++++|. +....+. .+..+++|++|++++|..+..+| ..+.++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 489999999999999887 58899999999999986 5432222 23568999999999944566665 56889999
Q ss_pred CcEEEeccccccccchhhccCCCCCC---EEecccCCcCCcccc-cccCCCCCC-EEeccCCcCCCCCccccCCCccccE
Q 003330 694 LKNLSVTNCHSLQELPADIGKMKSLQ---ILRLYACPHLRTLPA-RICELVCLK-YLNISQCVSLSCLPQGIGNLIRLEK 768 (829)
Q Consensus 694 L~~L~l~~~~~~~~lp~~l~~l~~L~---~L~l~~~~~l~~lp~-~~~~l~~L~-~L~l~~~~~l~~lp~~l~~l~~L~~ 768 (829)
|++|++++|. +..+|. +..+++|+ .|++++|..+..+|. .+..+++|+ +|++++|. +..+|......++|+.
T Consensus 107 L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEE
T ss_pred CCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCE
Confidence 9999999987 556886 88888998 999999856666765 488999999 99999964 5578776555589999
Q ss_pred eeccccccCccCC-cccccc-cccCceeccchhhhhhhhhhhhCCCceEEecccccc
Q 003330 769 IDMRECSQIWSLP-KSVNSL-KSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFS 823 (829)
Q Consensus 769 L~l~~~~~~~~lp-~~l~~l-~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~ 823 (829)
|++++|..+..+| ..+..+ ++|+.|++++|.....+.. .+++++.....++.+
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 9999995355654 567888 9999999998865544332 567776666655543
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.2e-15 Score=145.74 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=99.6
Q ss_pred CCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCC
Q 003330 614 SNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 693 (829)
Q Consensus 614 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~ 693 (829)
..+++|++|++++|.++.+| .+..+++|++|++++|.+... .....+++|++|++++|......|..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 45667777777777777776 567777777777776643211 11234666666777666544445666777777
Q ss_pred CcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccc
Q 003330 694 LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRE 773 (829)
Q Consensus 694 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 773 (829)
|++|++++|......|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECB
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeC
Confidence 7777777776555566667777777777777766566665 46677777777777753 44454 566677777777777
Q ss_pred cc
Q 003330 774 CS 775 (829)
Q Consensus 774 ~~ 775 (829)
|+
T Consensus 191 N~ 192 (197)
T 4ezg_A 191 QT 192 (197)
T ss_dssp C-
T ss_pred cc
Confidence 76
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=1.4e-14 Score=169.57 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=56.4
Q ss_pred CCcceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccC----------
Q 003330 541 PFNAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALG---------- 608 (829)
Q Consensus 541 ~~~~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~---------- 608 (829)
|..++++.++...+..++-. -..+++|++|.|..+. ...+| .+|.++++|++|++++|........
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 34556666655555444321 1344555555554433 23332 3455556666666555543221110
Q ss_pred ---------CC--cccCCccccceeeecccccCC--CCCCccccCCCceEEeeeccc
Q 003330 609 ---------NF--SVCSNLTNLRSLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 609 ---------~~--~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~ 652 (829)
.+ ..++++++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 01 124566666666776666653 344566677777777776654
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.1e-14 Score=152.23 Aligned_cols=175 Identities=17% Similarity=0.259 Sum_probs=130.8
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCC
Q 003330 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 665 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 665 (829)
+..+++|+.|++.+|.... ++.+..+++|++|++++|.++.++. +..+++|++|++++|.+... + ...
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~-----~l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-----VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-S-----SLK 109 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-----CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG-G-----GGT
T ss_pred hhhcCcccEEEccCCCccc-----ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC-h-----hhc
Confidence 4567788888887775432 3446778888888888888888776 77888888888888876541 1 135
Q ss_pred ccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 666 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
.+++|++|++++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|+.|++++|.. ..++. +..+++|++|
T Consensus 110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEE
T ss_pred cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEE
Confidence 57888888888884 44453 58888999999999876 4444 4788889999999988654 44544 8888999999
Q ss_pred eccCCcCCCCCccccCCCccccEeeccccccCccCC
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
++++| .++.+|. +..+++|+.|++++|++ ...|
T Consensus 184 ~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i-~~~~ 216 (291)
T 1h6t_A 184 YLSKN-HISDLRA-LAGLKNLDVLELFSQEC-LNKP 216 (291)
T ss_dssp ECCSS-CCCBCGG-GTTCTTCSEEEEEEEEE-ECCC
T ss_pred ECCCC-cCCCChh-hccCCCCCEEECcCCcc-cCCc
Confidence 99886 5566764 88899999999999883 3344
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3e-14 Score=145.50 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=110.7
Q ss_pred cCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCceEEeeecccc
Q 003330 575 SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKIN 653 (829)
Q Consensus 575 ~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~ 653 (829)
+.+....+|..+. ++|+.|++.+|....... ..+.++++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCccccCCCCC--CCCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 3444556665554 578888887776544322 2366777888888888888766654 677788888888877765
Q ss_pred ccccccccccCCccccccccccccccccccCCc-cccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCc
Q 003330 654 NSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRT 731 (829)
Q Consensus 654 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~ 731 (829)
.... ..+..+++|++|+|++|. +..+|. .+..+++|++|++++|.. ..+| ..+..+++|++|++++|.....
T Consensus 97 ~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 97 SLPL----GVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCT----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccCh----hHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 3222 223457788888888874 444444 357788888888887754 4444 4677788888888887655544
Q ss_pred ccccccCCCCCCEEeccCCcC
Q 003330 732 LPARICELVCLKYLNISQCVS 752 (829)
Q Consensus 732 lp~~~~~l~~L~~L~l~~~~~ 752 (829)
.+..+..+++|++|++++|+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 444677778888888887654
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=3e-14 Score=157.31 Aligned_cols=283 Identities=12% Similarity=-0.006 Sum_probs=174.2
Q ss_pred cccccccchhhHHHHHHh-hc---C--CCceEEEE--EcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCCCCCH
Q 003330 182 NLMGIGMALGKNKVKEMV-IG---R--DDLSVLGI--CGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L-~~---~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~ 250 (829)
+..++||+.+++++.+++ .. + ...+.+.| +|++|+||||||+.+++..... ..|...++|++.....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 356899999999999988 42 2 34566777 9999999999999999642211 123344568887677788
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCCh--------HhHHHhh---hcCC--C--c--
Q 003330 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSL--------AVLEQLI---FRVP--G--C-- 311 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~--------~~~~~l~---~~~~--g--s-- 311 (829)
..++..++.+++....................+ .+++++|||||++.. +.+..+. ...+ + +
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 899999998885432111111111122222222 378999999999863 3333222 1222 3 4
Q ss_pred eEEEEeeccccc------------cccceEEccCCCHHHHHHHHHHhh---cCCCCCCCchhHHHHHHHHHHcC------
Q 003330 312 KTLVVSRFKFST------------VLNDTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCK------ 370 (829)
Q Consensus 312 ~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~Lf~~~a---~~~~~~~~~~~~~~~~~i~~~~~------ 370 (829)
.||+||+..... .....+++++++.++++++|...+ +.. ....++....|++.++
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD----TVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT----TSCCHHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC----CCCChHHHHHHHHHHHHhccCC
Confidence 477788754311 112239999999999999997653 321 1223457889999999
Q ss_pred CchhHHHHHHHHh-c-----CC---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCC--C
Q 003330 371 GLPLALKVIGASL-R-----EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFP--E 439 (829)
Q Consensus 371 g~PLai~~~~~~l-~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~ 439 (829)
|.|..+..+.... . +. +...+..+...... ...+.-++..||++.+.++..++.+. .
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 9997655544321 1 11 12223333322110 22344567889999999999888764 3
Q ss_pred CCccCHHHHHHHHHHh----cC---CCHHHHHHHHHHHhhcchhhhhh
Q 003330 440 DKKIPLEVLINMWVEI----HD---LDEEEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 440 ~~~i~~~~l~~~w~a~----~~---~~~~~~~~~l~~L~~~sli~~~~ 480 (829)
+..+....+...+... .+ +.......++++|.+.++|....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3456666655544321 12 34567788999999999997553
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.6e-14 Score=150.93 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=143.7
Q ss_pred ccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCc
Q 003330 612 VCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 691 (829)
Q Consensus 612 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l 691 (829)
.+..+++|+.|++++|.+..++ .+..+++|++|++++|.+....+ ...+++|+.|++++|. +..+|. +..+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 3567899999999999999886 48889999999999998765322 3568999999999985 555654 9999
Q ss_pred CCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeec
Q 003330 692 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 771 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 771 (829)
++|++|++++|. +..++ .+..+++|+.|++++|.. ..+ ..+..+++|++|++++| .+..++. +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEEC
Confidence 999999999986 45554 688999999999999764 444 56889999999999997 4556665 999999999999
Q ss_pred cccccCccCCcccccccccCceeccchhh
Q 003330 772 RECSQIWSLPKSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 772 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~ 800 (829)
++|. +..+|. +..+++|+.|++.+|..
T Consensus 186 ~~N~-i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 186 SKNH-ISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSC-CCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred CCCc-CCCChh-hccCCCCCEEECcCCcc
Confidence 9998 677774 88999999999988743
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=2e-16 Score=177.57 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=124.9
Q ss_pred ceEEEeeeCCccccccc--cccCCceEEEEEeccCCCcc---ccChhhhcCCCCceEEEccccCCccccCCCcccCCcc-
Q 003330 544 AQIVSIHTGDMREMDWF--RMEFPKAEVLILNFSSTEEY---FLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLT- 617 (829)
Q Consensus 544 ~~~lsi~~~~~~~~~~~--~~~~~~l~~l~L~~~~~~~~---~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~- 617 (829)
.+.+.+....+....+. ...+++++.|.|..+..... .+|..+..+++|++|++++|.........+ +..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--LQGLQT 82 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH--HHTTCS
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH--HHHHhh
Confidence 34444544444443332 23456777777766553211 445666777777777777765433211111 11222
Q ss_pred ---ccceeeecccccC-----CCCCCccccCCCceEEeeeccccccccccccc-cCCccccccccccccccccc----cC
Q 003330 618 ---NLRSLWLEKVSIS-----QLPKSSIPLKKMQKISFVLCKINNSLDQSVVD-LPKTLPCLTELTFDHCDDLM----KL 684 (829)
Q Consensus 618 ---~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~----~l 684 (829)
+|++|++++|.++ .+|..+..+++|++|++++|.+.......+.. .....++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 5777777777766 34555666777777777776654322211111 11223456666666664332 23
Q ss_pred CccccCcCCCcEEEeccccccccchhhcc-----CCCCCCEEecccCCcCCc----ccccccCCCCCCEEeccCCcCCCC
Q 003330 685 PPSICGLQSLKNLSVTNCHSLQELPADIG-----KMKSLQILRLYACPHLRT----LPARICELVCLKYLNISQCVSLSC 755 (829)
Q Consensus 685 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~-----~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~l~~~~~l~~ 755 (829)
+..+..+++|++|++++|......+..+. .+++|++|++++|..... ++..+..+++|++|++++|.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44445556666666666553222222221 244566666666543331 344455555666666655432111
Q ss_pred ----Cccc-cCCCccccEeeccccccCcc----CCcccccccccCceeccch
Q 003330 756 ----LPQG-IGNLIRLEKIDMRECSQIWS----LPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 756 ----lp~~-l~~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~~~~~ 798 (829)
++.. ...+++|++|++++|.+... ++..+..+++|+.|++++|
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1111 22355555555555542211 4444444555555555544
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=2.4e-14 Score=164.03 Aligned_cols=171 Identities=18% Similarity=0.253 Sum_probs=116.7
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCC
Q 003330 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 665 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 665 (829)
+..+++|+.|++.+|... .++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+... ....
T Consensus 39 ~~~L~~L~~L~l~~n~i~-----~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l------~~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL------SSLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-----CCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC------TTST
T ss_pred hhcCCCCCEEECcCCCCC-----CChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC------hhhc
Confidence 456677777777766532 23346677777777777777777765 67777778888777766531 1234
Q ss_pred ccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 666 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
.+++|+.|+|++|. +..+| .+..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|.... +++ +..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEE
Confidence 57778888887774 44443 47778888888888775 3444 467778888888888765444 333 7778888888
Q ss_pred eccCCcCCCCCccccCCCccccEeecccccc
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
+|++| .+..+| .+..+++|+.|+|++|++
T Consensus 181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 181 YLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 88876 445554 477788888888888874
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=7.6e-14 Score=155.21 Aligned_cols=219 Identities=24% Similarity=0.232 Sum_probs=111.1
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCce
Q 003330 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQK 644 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 644 (829)
++++.|.+..+. ...+| .++++++|+.|++.+|..... +. ..++|++|++++|.+..+| .+..+++|++
T Consensus 173 ~~L~~L~L~~n~--l~~l~-~~~~l~~L~~L~l~~N~l~~l-----~~--~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 173 PSLEFIAAGNNQ--LEELP-ELQNLPFLTAIYADNNSLKKL-----PD--LPLSLESIVAGNNILEELP-ELQNLPFLTT 241 (454)
T ss_dssp TTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCSSCCSSC-----CC--CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred ccccEEECcCCc--CCcCc-cccCCCCCCEEECCCCcCCcC-----CC--CcCcccEEECcCCcCCccc-ccCCCCCCCE
Confidence 355555554433 23345 466667777777666654321 11 1236666666666666666 3666677777
Q ss_pred EEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccc--cchhh-----------
Q 003330 645 ISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPAD----------- 711 (829)
Q Consensus 645 L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~----------- 711 (829)
|++++|++.. ++ ..+++|+.|++++|. +..+|.. +++|++|++++|.... .+|..
T Consensus 242 L~l~~N~l~~-l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 242 IYADNNLLKT-LP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp EECCSSCCSS-CC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred EECCCCcCCc-cc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 7777665543 11 113455556655553 3334432 2445555555543221 11111
Q ss_pred --ccCC-CCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCc--cCCccccc
Q 003330 712 --IGKM-KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW--SLPKSVNS 786 (829)
Q Consensus 712 --l~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~--~lp~~l~~ 786 (829)
+..+ ++|++|++++|. +..+|.. +++|++|++++| .+..+|. .+++|++|++++|.+.+ .+|..+..
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp SEECCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred CcccCCcCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 1123 478888888755 3446653 578899999886 4557776 47889999999998666 67778877
Q ss_pred c-------------cccCceeccchhhhhhhhhhhhCCCce
Q 003330 787 L-------------KSLRQVICEEDVSWAWKDLEKTLPNLH 814 (829)
Q Consensus 787 l-------------~~L~~L~~~~~~~~~~~~l~~~lp~L~ 814 (829)
+ ++|+.|++++|.......+-..+.+|.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp EECCC------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 7 788999988876554333333333443
No 95
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1e-13 Score=154.17 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=96.2
Q ss_pred cceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003330 543 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
..+.+.+....+..++. ..++++.|.+..+.. ..+| .|+++++|++|++.+|..... + ....+|++|
T Consensus 112 ~L~~L~l~~n~l~~l~~---~~~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~l-----p--~~~~~L~~L 178 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSD---LPPLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKL-----P--DLPPSLEFI 178 (454)
T ss_dssp TCCEEECCSSCCSCCCS---CCTTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCC-----C--CCCTTCCEE
T ss_pred CCcEEECCCCccCcccC---CCCCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCccc-----C--CCcccccEE
Confidence 45566665554443321 125777777766543 4577 588889999999888765431 1 123478888
Q ss_pred eecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccc
Q 003330 623 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 623 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 702 (829)
++++|.++.+| .+..+++|++|++++|.+.. ++ ...++|+.|++++|. +..+|. ++.+++|++|++++|
T Consensus 179 ~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~-------~~~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 179 AAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LP-------DLPLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp ECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC-------CCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred ECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CC-------CCcCcccEEECcCCc-CCcccc-cCCCCCCCEEECCCC
Confidence 88888888877 57778888888888777653 11 113467777777763 446663 667777777777766
Q ss_pred cccccchhhccCCCCCCEEecccC
Q 003330 703 HSLQELPADIGKMKSLQILRLYAC 726 (829)
Q Consensus 703 ~~~~~lp~~l~~l~~L~~L~l~~~ 726 (829)
. +..+|.. +++|+.|++++|
T Consensus 248 ~-l~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 248 L-LKTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp C-CSSCCSC---CTTCCEEECCSS
T ss_pred c-CCccccc---ccccCEEECCCC
Confidence 4 3334432 244455554443
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.54 E-value=2.4e-13 Score=146.47 Aligned_cols=283 Identities=13% Similarity=0.047 Sum_probs=172.6
Q ss_pred CcccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC------CHHHHH
Q 003330 181 GNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP------NVEQLR 254 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~------~~~~l~ 254 (829)
.+..++||+.+.+++.+++..+ +++.|+|++|+|||||++++++.. . ++|+++.... +...+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHH
Confidence 3457899999999999988642 799999999999999999999542 1 4577765432 455666
Q ss_pred HHHHHhhcCC----------C---CCCCCCCcchhhHHHHhh----c-CCcEEEEEcCCCChHh---------HHHhh--
Q 003330 255 AKVWGFVSGC----------D---SMEPNYVIPHWNLQIQSK----L-GSRCLVVLDDVWSLAV---------LEQLI-- 305 (829)
Q Consensus 255 ~~i~~~l~~~----------~---~~~~~~~~~~~~~~~~~~----~-~~~~LlVlDdv~~~~~---------~~~l~-- 305 (829)
..+...+... . ..........+....+.+ . .++++|||||++.... +..+.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6555544320 0 000000011112222211 1 2389999999986432 22222
Q ss_pred -hcCCCceEEEEeecccc--------c------cc-cceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHc
Q 003330 306 -FRVPGCKTLVVSRFKFS--------T------VL-NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKC 369 (829)
Q Consensus 306 -~~~~gs~iivTtR~~~~--------~------~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~ 369 (829)
...++.++|+|++.... . +. ...+++.+|+.+|+.+++....-.... ...++.+.++++.+
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHh
Confidence 23468899999876421 1 11 247899999999999999875322111 12245788999999
Q ss_pred CCchhHHHHHHHHhcC-CChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCC---ChhHHHHHHhhCCCCCCCccCH
Q 003330 370 KGLPLALKVIGASLRE-QPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYL---PKKVKECFLDLGSFPEDKKIPL 445 (829)
Q Consensus 370 ~g~PLai~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~fp~~~~i~~ 445 (829)
+|+|+++..++..+.. .+...+ ...+. +.+...+.-.+..+ ++..+..+..+|+ + .++.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRA---MKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHH---HHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHH---HHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCH
Confidence 9999999999876432 222221 11110 11111111122222 7889999999987 2 2455
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHhhcchhhhhhhcccCccccccccccc-hhhHHHHHHHH
Q 003330 446 EVLINMWVEIH-DLDEEEAFAILVELSDRNLLKIVKDARAGDMYSSYYEISV-TQHDVLRDLAL 507 (829)
Q Consensus 446 ~~l~~~w~a~~-~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~-~mHdlv~~~~~ 507 (829)
..+.....+.. +++......+++.|.+.+++.... + .| --|++++++.+
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~----~---------~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED----N---------TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET----T---------EEEESSHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecC----C---------EEEEecHHHHHHHc
Confidence 55554432222 567777889999999999986531 1 13 34888887653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.2e-13 Score=148.66 Aligned_cols=221 Identities=17% Similarity=0.131 Sum_probs=162.8
Q ss_pred CceEEEEEeccCCCccccCh-hhhcCCCCceEEEccccCCccccCCCcccCCccccce-eeecccccCCCCC-CccccCC
Q 003330 565 PKAEVLILNFSSTEEYFLPP-FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS-LWLEKVSISQLPK-SSIPLKK 641 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~-L~l~~~~i~~lp~-~~~~l~~ 641 (829)
++++.|.|..+. ...+|+ +|.++++|++|++++|........ ..|.++++|.. +.+.+|.+..+++ .+..+++
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 467777776554 566764 689999999999998875432221 34677777765 5666788888865 4788999
Q ss_pred CceEEeeeccccccccccccccCCccccccccccccccccccCCc-cccCcC-CCcEEEeccccccccchhhccCCCCCC
Q 003330 642 MQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQ-SLKNLSVTNCHSLQELPADIGKMKSLQ 719 (829)
Q Consensus 642 L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~ 719 (829)
|++|++++|.+....+... ....++..|++.++..+..+|. .+..+. .|+.|++++|. ++.+|.......+|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~----~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHK----IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCEEEEEEECCSSCCCCTT----CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEE
T ss_pred cccccccccccccCCchhh----cccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchh
Confidence 9999999998765433222 2355677888887777777764 455554 68899999876 667777776778899
Q ss_pred EEecccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003330 720 ILRLYACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 720 ~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
.|.+++++.++.+|.. +..+++|++|++++| .++.+|.. .+.+|+.|.+.+|..++.+| .+.++++|+.+++.++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 9999988888888864 688999999999986 67788763 36677777777777788888 4778888888886543
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.5e-14 Score=140.17 Aligned_cols=153 Identities=13% Similarity=0.230 Sum_probs=130.4
Q ss_pred ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCC
Q 003330 636 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKM 715 (829)
Q Consensus 636 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 715 (829)
...+++|++|++++|.+.. ++. ...+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LTG-----IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CTT-----GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhhcCCccEEeccCCCccC-hHH-----HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 4678899999999988763 221 356899999999999 455454 68999999999999988766678889999
Q ss_pred CCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceec
Q 003330 716 KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVIC 795 (829)
Q Consensus 716 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 795 (829)
++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEe
Confidence 999999999988777788889999999999999987688887 68999999999999998 66777 7889999999999
Q ss_pred cchh
Q 003330 796 EEDV 799 (829)
Q Consensus 796 ~~~~ 799 (829)
.+|.
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 8874
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=2.3e-14 Score=162.34 Aligned_cols=189 Identities=20% Similarity=0.189 Sum_probs=138.4
Q ss_pred ceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceE
Q 003330 566 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKI 645 (829)
Q Consensus 566 ~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 645 (829)
+++.|.|..+. ...+|..+ +++|++|++++|.... ++ ..+++|++|++++|.++.+|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~--L~~lp~~l--~~~L~~L~Ls~N~l~~-----ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLN--LSSLPDNL--PPQITVLEITQNALIS-----LP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSC--CSCCCSCC--CTTCSEEECCSSCCSC-----CC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCC--CCccCHhH--cCCCCEEECcCCCCcc-----cc--cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 44455544433 44577655 3789999998886542 22 356889999999999988887 554 89999
Q ss_pred EeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEeccc
Q 003330 646 SFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYA 725 (829)
Q Consensus 646 ~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 725 (829)
++++|.+.. ++. .+++|+.|++++|. +..+|. .+++|++|++++|. ++.+|. +. ++|+.|++++
T Consensus 126 ~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-------LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp ECCSSCCSC-CCC-------CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCS
T ss_pred ECCCCcCCC-CCC-------cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcC
Confidence 999887764 221 47889999999885 555776 57889999999876 455776 65 8899999998
Q ss_pred CCcCCcccccccCCCCC-------CEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccc
Q 003330 726 CPHLRTLPARICELVCL-------KYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKS 789 (829)
Q Consensus 726 ~~~l~~lp~~~~~l~~L-------~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 789 (829)
|. +..+|. +.. +| +.|+|++| .++.+|..+..+++|+.|+|++|++.+..|..+..++.
T Consensus 190 N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 190 NL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 64 557777 544 67 99999886 56678888888999999999999977777777666544
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.9e-14 Score=163.44 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=144.3
Q ss_pred ccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCc
Q 003330 612 VCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 691 (829)
Q Consensus 612 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l 691 (829)
.+..|++|+.|++++|.+..+| .+..+++|+.|+|++|.+....+ ...+++|+.|+|++|. +..+| .+..+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~-l~~l~-~l~~l 108 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENK-IKDLS-SLKDL 108 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSC-CCCCT-TSTTC
T ss_pred chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCC-CCCCh-hhccC
Confidence 3567899999999999999987 58899999999999998765332 3568999999999984 55565 69999
Q ss_pred CCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeec
Q 003330 692 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 771 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 771 (829)
++|+.|+|++|. +..++ .+..+++|+.|+|++|... .+ ..+..+++|+.|+|++|. +..++. +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEEC
Confidence 999999999987 44554 6889999999999997654 44 568899999999999975 455554 999999999999
Q ss_pred cccccCccCCcccccccccCceeccchhhh
Q 003330 772 RECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 772 ~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
++|. +..+| .+..+++|+.|++.+|...
T Consensus 183 s~N~-i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNH-ISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSC-CCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred cCCC-CCCCh-HHccCCCCCEEEccCCcCc
Confidence 9998 66676 5889999999999887543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=4.3e-14 Score=160.05 Aligned_cols=177 Identities=22% Similarity=0.262 Sum_probs=142.5
Q ss_pred CCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccc
Q 003330 591 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCL 670 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L 670 (829)
+|+.|++.+|...... .. + +++|++|++++|.++.+| ..+++|++|++++|.+.. ++. + ..+|
T Consensus 60 ~L~~L~Ls~n~L~~lp-~~---l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l------~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP-DN---L--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-L------PASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCC-SC---C--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-C------CTTC
T ss_pred CccEEEeCCCCCCccC-Hh---H--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-h------hcCC
Confidence 9999999998765421 11 2 378999999999999999 457999999999998765 332 2 2289
Q ss_pred cccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCC
Q 003330 671 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 750 (829)
Q Consensus 671 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 750 (829)
++|+|++|. +..+|. .+++|+.|++++|. ++.+|. .+++|++|++++|. +..+|. +. ++|+.|+|++|
T Consensus 123 ~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCC
Confidence 999999985 555887 78999999999987 556776 67899999999976 455887 65 99999999996
Q ss_pred cCCCCCccccCCCccc-------cEeeccccccCccCCcccccccccCceeccchhhh
Q 003330 751 VSLSCLPQGIGNLIRL-------EKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 751 ~~l~~lp~~l~~l~~L-------~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
.++.+|. +.. +| +.|++++|. +..+|..+..+++|+.|++++|...
T Consensus 191 -~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 191 -LLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred -CCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCC
Confidence 5668887 654 77 999999998 7789999999999999999988543
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=6.7e-13 Score=143.30 Aligned_cols=282 Identities=10% Similarity=0.041 Sum_probs=169.2
Q ss_pred CcccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-----CCHHHHHH
Q 003330 181 GNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-----PNVEQLRA 255 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-----~~~~~l~~ 255 (829)
.+..++||+.+.+++.+ +.. +++.|+|++|+|||||++++++. ... .++|++.... .+...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINE--LNL----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHH--HTC----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEchhhccccCCCHHHHHH
Confidence 34678999999999999 653 69999999999999999999964 221 2458887642 34444444
Q ss_pred HHHHhhc-------------CCC-C---CCCC-C------CcchhhHHHHhhc--C-CcEEEEEcCCCChH-----h---
Q 003330 256 KVWGFVS-------------GCD-S---MEPN-Y------VIPHWNLQIQSKL--G-SRCLVVLDDVWSLA-----V--- 300 (829)
Q Consensus 256 ~i~~~l~-------------~~~-~---~~~~-~------~~~~~~~~~~~~~--~-~~~LlVlDdv~~~~-----~--- 300 (829)
.+...+. ... . .... . ....+....+.+. . ++++|||||++..+ .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 4433321 000 0 0000 0 0112222333331 1 49999999998632 2
Q ss_pred -HHHhhhcCCCceEEEEeecccc--------c------cc-cceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 003330 301 -LEQLIFRVPGCKTLVVSRFKFS--------T------VL-NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQ 364 (829)
Q Consensus 301 -~~~l~~~~~gs~iivTtR~~~~--------~------~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~ 364 (829)
+..+....++.++|+|++.... . +. ...+++.+|+.+|+.+++............. . ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~-~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y-EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H-HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H-HH
Confidence 2223233467899999986531 1 11 2578999999999999998754211111111 2 78
Q ss_pred HHHHcCCchhHHHHHHHHhcC-CChhHHHH-HHHHhccCCCCccccchhHHHHHH-Hhh--cCCChhHHHHHHhhCCCCC
Q 003330 365 IVKKCKGLPLALKVIGASLRE-QPEMYWTS-AKKRLSKGEPICESHENNLLDRMA-ISI--QYLPKKVKECFLDLGSFPE 439 (829)
Q Consensus 365 i~~~~~g~PLai~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~fp~ 439 (829)
|++.|+|+|+++..++..+.. .+...|.. +.+.. ...+...+. +.+ ..|++..+..+..+|+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----------KKLILKEFENFLHGREIARKRYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----------HHHHHHHHHHHhhccccccHHHHHHHHHHHc---
Confidence 999999999999999887643 23323321 11110 011222222 111 1688999999999998
Q ss_pred CCccCHHHHHHHHHHhcC--CCHHHHHHHHHHHhhcchhhhhhhcccCccccccccccch-hhHHHHHHH
Q 003330 440 DKKIPLEVLINMWVEIHD--LDEEEAFAILVELSDRNLLKIVKDARAGDMYSSYYEISVT-QHDVLRDLA 506 (829)
Q Consensus 440 ~~~i~~~~l~~~w~a~~~--~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~-mHdlv~~~~ 506 (829)
+. +...+.....+..+ ++......+++.|.+.++|.... + .|. -|++++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~----~---------~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG----E---------KYCPSEPLISLAF 356 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS----S---------CEEESSHHHHHHT
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC----C---------EEEecCHHHHHhh
Confidence 22 44555432212223 66777888999999999986432 1 234 588888753
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=6.8e-16 Score=173.30 Aligned_cols=257 Identities=15% Similarity=0.075 Sum_probs=176.6
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCC-cccCCccccceeeecccccCCC-CCCc-cccC-
Q 003330 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQL-PKSS-IPLK- 640 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~l-p~~~-~~l~- 640 (829)
+.++.|+|..+.......+..+..+++|++|++.+|.........+ ..+..+++|++|++++|.+... +..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5677888866554333334458899999999999987654322122 3456789999999999988642 2122 2344
Q ss_pred ---CCceEEeeeccccccccccccccCCccccccccccccccccccCCccc-----cCcCCCcEEEeccccccc----cc
Q 003330 641 ---KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI-----CGLQSLKNLSVTNCHSLQ----EL 708 (829)
Q Consensus 641 ---~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i-----~~l~~L~~L~l~~~~~~~----~l 708 (829)
+|++|++++|.+.......++.....+++|++|++++|......+..+ ...++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 799999999987654333444455678999999999997433323222 235689999999997554 34
Q ss_pred hhhccCCCCCCEEecccCCcCCccccccc-----CCCCCCEEeccCCcCCCC----CccccCCCccccEeeccccccCcc
Q 003330 709 PADIGKMKSLQILRLYACPHLRTLPARIC-----ELVCLKYLNISQCVSLSC----LPQGIGNLIRLEKIDMRECSQIWS 779 (829)
Q Consensus 709 p~~l~~l~~L~~L~l~~~~~l~~lp~~~~-----~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~ 779 (829)
+..+..+++|++|++++|......+..+. .+++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 66777889999999999875443333332 367999999999855442 577788899999999999984322
Q ss_pred ----C-CcccccccccCceeccchhhhh-----hhhhhhhCCCceEEecccc
Q 003330 780 ----L-PKSVNSLKSLRQVICEEDVSWA-----WKDLEKTLPNLHVQVPAKC 821 (829)
Q Consensus 780 ----l-p~~l~~l~~L~~L~~~~~~~~~-----~~~l~~~lp~L~~~~~~~~ 821 (829)
+ +.....+++|+.|++++|.... .......+|+|+......+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 2222358899999998874443 3344446788877665543
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4.9e-14 Score=151.59 Aligned_cols=227 Identities=15% Similarity=0.077 Sum_probs=164.8
Q ss_pred CccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccC-CCCCC-ccccCCCceEE-eeeccccc
Q 003330 578 EEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKS-SIPLKKMQKIS-FVLCKINN 654 (829)
Q Consensus 578 ~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~-~~~l~~L~~L~-L~~~~~~~ 654 (829)
....+|..+ .++++.|++.+|....... ..|.++++|++|+|++|.+. .+|.. |..+++|..+. +..|++..
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 356777655 3689999999987654332 24788999999999999985 46654 67888887654 45555543
Q ss_pred cccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchh-hccCCC-CCCEEecccCCcCCcc
Q 003330 655 SLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPA-DIGKMK-SLQILRLYACPHLRTL 732 (829)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~-~L~~L~l~~~~~l~~l 732 (829)
.. +..+..+++|++|++++|......+..+....++..|++.++..+..+|. .+..+. .|+.|++++| .+..+
T Consensus 95 l~----~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i 169 (350)
T 4ay9_X 95 IN----PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI 169 (350)
T ss_dssp EC----TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE
T ss_pred cC----chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC
Confidence 22 23346789999999999854433344566778899999988877887774 455554 6899999985 56778
Q ss_pred cccccCCCCCCEEeccCCcCCCCCccc-cCCCccccEeeccccccCccCCc-ccccccccCceeccchhhhhhhhhhhhC
Q 003330 733 PARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDVSWAWKDLEKTL 810 (829)
Q Consensus 733 p~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~~l 810 (829)
|......++|+.|++++|+.++.+|.. +..+++|+.|++++|. +..+|. .+.+|++|+.+++.+.... +.+ ..+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~l--P~l-~~l 245 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKL--PTL-EKL 245 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCC--CCT-TTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcC--CCc-hhC
Confidence 887778889999999998999999875 7999999999999998 778875 4556666666665443222 222 356
Q ss_pred CCceEEec
Q 003330 811 PNLHVQVP 818 (829)
Q Consensus 811 p~L~~~~~ 818 (829)
++|+....
T Consensus 246 ~~L~~l~l 253 (350)
T 4ay9_X 246 VALMEASL 253 (350)
T ss_dssp CSCCEEEC
T ss_pred cChhhCcC
Confidence 67766543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.8e-15 Score=163.66 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=156.0
Q ss_pred CCceEEEEEeccCCCccccC-----hhhhcCC-CCceEEEccccCCccccCCCcccCCc-----cccceeeecccccCCC
Q 003330 564 FPKAEVLILNFSSTEEYFLP-----PFIENME-KLRALIVINYSTSNAALGNFSVCSNL-----TNLRSLWLEKVSISQL 632 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp-----~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~l 632 (829)
.++++.|.|..+. ....+ ..+.+++ +|++|++++|....... ..+..+ ++|++|++++|.++..
T Consensus 21 ~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhccCCCccEEECcCCcCChH
Confidence 3458877776654 33443 5678888 89999999886554322 223332 8899999999998854
Q ss_pred CCC-----cccc-CCCceEEeeeccccccccccccccCCc-cccccccccccccccc----cCCccccCcC-CCcEEEec
Q 003330 633 PKS-----SIPL-KKMQKISFVLCKINNSLDQSVVDLPKT-LPCLTELTFDHCDDLM----KLPPSICGLQ-SLKNLSVT 700 (829)
Q Consensus 633 p~~-----~~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~----~lp~~i~~l~-~L~~L~l~ 700 (829)
+.. +..+ ++|++|++++|.+.......+...... .++|++|+|++|.... .++..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 432 3344 789999999998765544333332233 3589999999986443 3444555665 89999999
Q ss_pred cccccccchh----hccCC-CCCCEEecccCCcCC----cccccccC-CCCCCEEeccCCcCCCCC----ccccCCCccc
Q 003330 701 NCHSLQELPA----DIGKM-KSLQILRLYACPHLR----TLPARICE-LVCLKYLNISQCVSLSCL----PQGIGNLIRL 766 (829)
Q Consensus 701 ~~~~~~~lp~----~l~~l-~~L~~L~l~~~~~l~----~lp~~~~~-l~~L~~L~l~~~~~l~~l----p~~l~~l~~L 766 (829)
+|......+. .+..+ ++|++|++++|.... .++..+.. .++|++|+|++|.....- +..+..+++|
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 9875554443 34455 599999999976443 25556655 458999999997543322 2345778899
Q ss_pred cEeeccccccC-------ccCCcccccccccCceeccchhh
Q 003330 767 EKIDMRECSQI-------WSLPKSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 767 ~~L~l~~~~~~-------~~lp~~l~~l~~L~~L~~~~~~~ 800 (829)
++|++++|... ..++..+..+++|+.|++++|..
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 99999999721 23344567788899999887743
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=1.9e-13 Score=159.88 Aligned_cols=228 Identities=16% Similarity=0.127 Sum_probs=161.0
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003330 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
++.++.+.+..+.. .. +.....+++|+.|++.+|........ ...+..+.+|++|++..+.+..++..+..+++|+
T Consensus 348 l~~L~~l~l~~n~~--~~-~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 348 LKSLKRLTFTSNKG--GN-AFSEVDLPSLEFLDLSRNGLSFKGCC-SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp CTTCCEEEEESCCS--CC-BCCCCBCTTCCEEECCSSCCBEEEEC-CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCC
T ss_pred chhhhhcccccccC--CC-Ccccccccccccchhhcccccccccc-ccchhhhhhhhhhhcccccccccccccccccccc
Confidence 44555555443322 11 22245677888888877754332211 1223456778888888888777777788888888
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecccccccc-chhhccCCCCCCEEe
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE-LPADIGKMKSLQILR 722 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~ 722 (829)
.+++..+......+. ..+..+++|+.+++++|......|..+..+++|+.|++++|..... .|..+..+++|++|+
T Consensus 424 ~l~l~~~~~~~~~~~---~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp EEECTTSEEESTTSS---CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred chhhhhccccccccc---cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 888887665443222 2235578888888888876666677788889999999998875543 567788899999999
Q ss_pred cccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccc-cccCceeccch
Q 003330 723 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSL-KSLRQVICEED 798 (829)
Q Consensus 723 l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l-~~L~~L~~~~~ 798 (829)
+++|......|..+..+++|++|+|++|......|..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99987666667778889999999999875443345568889999999999998666667777777 67888886655
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-13 Score=136.93 Aligned_cols=160 Identities=19% Similarity=0.135 Sum_probs=97.8
Q ss_pred ccceeeecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCc
Q 003330 618 NLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLK 695 (829)
Q Consensus 618 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~ 695 (829)
+|++|++++|.++.++.. +..+++|++|++++|.+.... ...+..+++|++|++++|. +..+| ..+..+++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 455555555555554443 345555555555555443211 1112345666666666664 33343 3457788888
Q ss_pred EEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccc
Q 003330 696 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 696 ~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 775 (829)
+|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.. .+.+++|+.|+++.|.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHh
Confidence 888887764433334467788888888888654433333467788888888888633 2455678888888888
Q ss_pred cCccCCcccccccc
Q 003330 776 QIWSLPKSVNSLKS 789 (829)
Q Consensus 776 ~~~~lp~~l~~l~~ 789 (829)
..+.+|..++.++.
T Consensus 177 ~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 177 HSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTBBCTTSSBCT
T ss_pred CCceeeccCccccC
Confidence 77788877776654
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=136.09 Aligned_cols=176 Identities=20% Similarity=0.241 Sum_probs=133.1
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCceEEeeecccccccc
Q 003330 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLD 657 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~ 657 (829)
...+|..+ .++|++|++.+|...... ...+.++++|++|++++|.++.+|.. +..+++|++|++++|.+.....
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLP---NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCC---TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCC---hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 44555433 458999999888765322 12367889999999999999988876 5789999999999988764322
Q ss_pred ccccccCCccccccccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccc
Q 003330 658 QSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI 736 (829)
Q Consensus 658 ~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 736 (829)
..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.|++++|...
T Consensus 94 ----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 94 ----GVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp ----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred ----hHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 223568899999999985 44554 45789999999999998754433445789999999999998543
Q ss_pred cCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccc
Q 003330 737 CELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 737 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 775 (829)
+.+++|+.|+++.|.....+|..++.++. ++..|.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCS 196 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBT
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccccC----Cccccc
Confidence 45678999999998888899988887765 455555
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=2.8e-15 Score=162.26 Aligned_cols=238 Identities=11% Similarity=0.045 Sum_probs=153.6
Q ss_pred CCcceEEEeeeCCcccccc-----ccccCC-ceEEEEEeccCCCccccChhhhcC-----CCCceEEEccccCCccccCC
Q 003330 541 PFNAQIVSIHTGDMREMDW-----FRMEFP-KAEVLILNFSSTEEYFLPPFIENM-----EKLRALIVINYSTSNAALGN 609 (829)
Q Consensus 541 ~~~~~~lsi~~~~~~~~~~-----~~~~~~-~l~~l~L~~~~~~~~~lp~~~~~l-----~~Lr~L~l~~~~~~~~~~~~ 609 (829)
+...+.+.+....+..... ....++ +++.|.|+.+.. ....+..+..+ ++|++|++.+|.........
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4457778877766655543 113456 788888776653 22334455554 89999999888754432221
Q ss_pred C-cccCCc-cccceeeecccccCCCCCC-----ccc-cCCCceEEeeeccccccccccccccCCccc-cccccccccccc
Q 003330 610 F-SVCSNL-TNLRSLWLEKVSISQLPKS-----SIP-LKKMQKISFVLCKINNSLDQSVVDLPKTLP-CLTELTFDHCDD 680 (829)
Q Consensus 610 ~-~~l~~l-~~L~~L~l~~~~i~~lp~~-----~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~ 680 (829)
+ ..+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+.......+......++ +|++|+|++|..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 1 123444 7899999999988865542 222 258999999988877544333333223344 899999999865
Q ss_pred cccCCcc----ccCc-CCCcEEEeccccccc----cchhhccCC-CCCCEEecccCCcCCcc----cccccCCCCCCEEe
Q 003330 681 LMKLPPS----ICGL-QSLKNLSVTNCHSLQ----ELPADIGKM-KSLQILRLYACPHLRTL----PARICELVCLKYLN 746 (829)
Q Consensus 681 ~~~lp~~----i~~l-~~L~~L~l~~~~~~~----~lp~~l~~l-~~L~~L~l~~~~~l~~l----p~~~~~l~~L~~L~ 746 (829)
....+.. +..+ ++|++|++++|.... .++..+..+ ++|++|++++|.....- ...+..+++|+.|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 4444433 3444 589999999887433 156666554 58999999987654432 23456778899999
Q ss_pred ccCCcC-------CCCCccccCCCccccEeeccccccCcc
Q 003330 747 ISQCVS-------LSCLPQGIGNLIRLEKIDMRECSQIWS 779 (829)
Q Consensus 747 l~~~~~-------l~~lp~~l~~l~~L~~L~l~~~~~~~~ 779 (829)
+++|.. +..++..+..+++|+.|++++|.+...
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 988751 223455677888899999999985444
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.9e-13 Score=134.93 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=102.6
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
+.++++++.++.+|..+. ++|+.|++++|.+..... ..+..+++|+.|+|++|......|..+.++++|++|+|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPP----GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECT----TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCH----hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 456677777777776554 567777777766543222 12345677777777777555555777888888888888
Q ss_pred ccccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecccccc
Q 003330 700 TNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 700 ~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
++|.. ..+| ..+..+++|+.|++++|......|..+..+++|++|+|++|......+..+..+++|++|++++|+.
T Consensus 88 s~N~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 88 YGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCcC-CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88764 4555 3457788888888888766555566778888888888888644333333477788888888888873
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=134.69 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=105.2
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
+.++++++.++.+|..+. ..+++|++++|.+....+. ..+..+++|++|+|++|......|..+.++++|++|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEAT---GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCC---CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCch---hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 467777777777776553 3456777777665432211 11245677777777777543334446788888888888
Q ss_pred ccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccC
Q 003330 700 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQI 777 (829)
Q Consensus 700 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 777 (829)
++|......|..+..+++|++|++++|......|..+..+++|++|+|++|......|..+..+++|+.|++++|++.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 887755555556788888888888887666666777888888888888886544444677888888888888888743
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=7.2e-13 Score=132.99 Aligned_cols=149 Identities=19% Similarity=0.136 Sum_probs=97.1
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEEE
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLS 698 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~ 698 (829)
+.++++++.+..+|..+. ++|++|+|++|.+....+. .+..+++|++|+|++|. +..+| ..+..+++|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPG----VFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHH----HhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEE
Confidence 456666666666665543 5666666666665543222 22446677777777764 34454 3457788888888
Q ss_pred eccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCc-cccCCCccccEeeccccccC
Q 003330 699 VTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQI 777 (829)
Q Consensus 699 l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~ 777 (829)
|++|......+..+..+++|+.|++++|. +..+|..+..+++|++|+|++| .+..+| ..+..+++|+.|++++|+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88775433333446778888888888754 4577777788888888888875 444555 34777888888888888743
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=4e-15 Score=169.54 Aligned_cols=197 Identities=18% Similarity=0.129 Sum_probs=136.6
Q ss_pred CCccccceeeecccccCCCCCCccccCCCceEEeeeccccc---------cccccccccCCccccccccc-ccccccccc
Q 003330 614 SNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINN---------SLDQSVVDLPKTLPCLTELT-FDHCDDLMK 683 (829)
Q Consensus 614 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~---------~~~~~~~~~~~~~~~L~~L~-L~~~~~~~~ 683 (829)
..+++|+.|+|++|.++.+|..+..+++|+.|+++.|.... ......+.....+++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 46778888888888888888888888888888886543100 01112222334567777777 4433 1221
Q ss_pred CCc------cccC--cCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCC
Q 003330 684 LPP------SICG--LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSC 755 (829)
Q Consensus 684 lp~------~i~~--l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 755 (829)
++. .+.. ...|+.|++++|. ++.+|. ++.+++|+.|++++|. +..+|..++.+++|+.|+|++| .++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-CCCC
Confidence 111 1111 1358899999875 566776 8889999999999865 4588888999999999999986 4556
Q ss_pred CccccCCCccccEeeccccccCccC-CcccccccccCceeccchhhhhhh----hhhhhCCCceEE
Q 003330 756 LPQGIGNLIRLEKIDMRECSQIWSL-PKSVNSLKSLRQVICEEDVSWAWK----DLEKTLPNLHVQ 816 (829)
Q Consensus 756 lp~~l~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~~~~~~~~~~~----~l~~~lp~L~~~ 816 (829)
+| .++.+++|+.|+|++|.+.+.. |..+..+++|+.|++++|.....+ .+...+|+|+..
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 87 7889999999999999843333 888899999999998888655432 233456776654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=4e-13 Score=145.04 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=67.8
Q ss_pred ccceeeecccccCCCCCC-cc-ccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCc
Q 003330 618 NLRSLWLEKVSISQLPKS-SI-PLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLK 695 (829)
Q Consensus 618 ~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 695 (829)
.++.|+|++|.++.++.. +. .+++|++|+|++|.+....+. .+..+++|++|+|++|......+..+.++++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh----hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 355556666555555444 22 455555555555544322111 123345555555555432222222344555555
Q ss_pred EEEeccccccccchhhccCCCCCCEEecccCCcCCcccccc----cCCCCCCEEeccCCcCCCCCc-cccCCCcc--ccE
Q 003330 696 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI----CELVCLKYLNISQCVSLSCLP-QGIGNLIR--LEK 768 (829)
Q Consensus 696 ~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~----~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~--L~~ 768 (829)
.|+|++|......|..+..+++|+.|+|++|. +..+|..+ ..+++|+.|+|++| .+..+| ..+..++. |+.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcce
Confidence 55555544333334445555555555555532 23333332 33455555555553 223333 22334443 244
Q ss_pred eeccccc
Q 003330 769 IDMRECS 775 (829)
Q Consensus 769 L~l~~~~ 775 (829)
|+|++|+
T Consensus 194 l~l~~N~ 200 (361)
T 2xot_A 194 LYLHNNP 200 (361)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 5555544
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=3e-11 Score=131.73 Aligned_cols=279 Identities=12% Similarity=0.046 Sum_probs=175.9
Q ss_pred ccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhcccc----cccc-CCeEEEEEeCCCC-CHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQV----TSYF-NNRILFLTVSQSP-NVEQL 253 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F-~~~~~wv~v~~~~-~~~~l 253 (829)
..++||+.+++++.+++.. ....+.+.|+|++|+||||||+.+++...- ...+ ...++|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999988753 345679999999999999999999963211 1122 3455688776666 78888
Q ss_pred HHHHHHhhcCCCCCCCCCCc-chhhHHHHhhcCCcEEEEEcCCCChH------h-HHHhhhcCCCceEEEEeecccc---
Q 003330 254 RAKVWGFVSGCDSMEPNYVI-PHWNLQIQSKLGSRCLVVLDDVWSLA------V-LEQLIFRVPGCKTLVVSRFKFS--- 322 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~LlVlDdv~~~~------~-~~~l~~~~~gs~iivTtR~~~~--- 322 (829)
+..++..+.+.......... .........+..++.+|||||++... . +..+....++..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 88888887543322211111 22333334445555599999998543 2 3344433367889999987632
Q ss_pred -c-----cccceEEccCCCHHHHHHHHHHhhc---CCCCCCCchhHHHHHHHHHHcC---Cchh-HHHHHHHHh--c-C-
Q 003330 323 -T-----VLNDTYEVELLREDESLSLFCYSAF---GQKTIPPSANENLVKQIVKKCK---GLPL-ALKVIGASL--R-E- 385 (829)
Q Consensus 323 -~-----~~~~~~~l~~L~~~e~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l--~-~- 385 (829)
. .....+++++++.++..+++...+. .... ..++....+++.++ |.|. |+.++-... . +
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT----YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS----CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC----cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 1 1134899999999999999998753 2221 22346778888888 8877 444443332 1 1
Q ss_pred --CChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHH-hc--CCCH
Q 003330 386 --QPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVE-IH--DLDE 460 (829)
Q Consensus 386 --~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a-~~--~~~~ 460 (829)
-+...+..++.... ...+.-++..|+++.+..+..++....+-.+ ......-.. .| ....
T Consensus 256 ~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIESEDVMSA--HKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp SCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHH--HHHHHHHHHHTTCCCCCH
T ss_pred CccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHhcccChH--HHHHHHHHHHcCCCCCCH
Confidence 13456666655431 2346677889999988888877761110111 111111111 12 2345
Q ss_pred HHHHHHHHHHhhcchhhhhh
Q 003330 461 EEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 461 ~~~~~~l~~L~~~sli~~~~ 480 (829)
.....++..|.+.++++...
T Consensus 321 ~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 67888999999999998654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=7.4e-13 Score=135.89 Aligned_cols=147 Identities=21% Similarity=0.321 Sum_probs=74.0
Q ss_pred hhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccC
Q 003330 585 FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLP 664 (829)
Q Consensus 585 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 664 (829)
.+..+++|+.|++.+|.... ++.+..+++|++|++++|.++.++. +..+++|++|++++|.+... + ...
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-----l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l-~----~~~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-----LAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL-N----GIP 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-----CTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCC-T----TCC
T ss_pred chhhcCcCcEEECcCCCccc-----chHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCc-C----ccc
Confidence 35666666666666654322 2235556666666666666666655 55666666666666554331 1 111
Q ss_pred CccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCE
Q 003330 665 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 744 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 744 (829)
. ++|+.|++++|. +..+| .+..+++|+.|++++|. +..++ .+..+++|+.|++++|.... + ..+..+++|+.
T Consensus 105 ~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~-~-~~l~~l~~L~~ 176 (263)
T 1xeu_A 105 S--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITN-T-GGLTRLKKVNW 176 (263)
T ss_dssp C--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCB-C-TTSTTCCCCCE
T ss_pred c--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcc-h-HHhccCCCCCE
Confidence 1 455555555552 33333 35555555555555543 33333 34455555555555543222 2 33444555555
Q ss_pred EeccCC
Q 003330 745 LNISQC 750 (829)
Q Consensus 745 L~l~~~ 750 (829)
|++++|
T Consensus 177 L~l~~N 182 (263)
T 1xeu_A 177 IDLTGQ 182 (263)
T ss_dssp EEEEEE
T ss_pred EeCCCC
Confidence 555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=3.7e-13 Score=138.14 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=135.7
Q ss_pred cCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCcc
Q 003330 588 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 667 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 667 (829)
++.++..+.+.++... .+..+..+++|++|++++|.++.+| .+..+++|++|++++|.+....+ ...+
T Consensus 17 ~l~~l~~l~l~~~~i~-----~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~------l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-----DLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP------LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTT-----SEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred HHHHHHHHHhcCCCcc-----cccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh------hccC
Confidence 4556666666665433 2334678899999999999999998 78899999999999998765332 3568
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEec
Q 003330 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 747 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 747 (829)
++|+.|++++|. +..+|.. .. ++|+.|++++|. +..++ .+..+++|+.|++++|. +..+| .+..+++|+.|++
T Consensus 85 ~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSC-CSCCTTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCc-cCCcCcc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEEC
Confidence 999999999984 5667653 33 999999999986 55565 68999999999999965 55565 6889999999999
Q ss_pred cCCcCCCCCccccCCCccccEeeccccccCccCC
Q 003330 748 SQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 748 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
++|. +..+ ..+..+++|+.|++++|+. ...|
T Consensus 158 ~~N~-i~~~-~~l~~l~~L~~L~l~~N~~-~~~~ 188 (263)
T 1xeu_A 158 HGNE-ITNT-GGLTRLKKVNWIDLTGQKC-VNEP 188 (263)
T ss_dssp TTSC-CCBC-TTSTTCCCCCEEEEEEEEE-ECCC
T ss_pred CCCc-Ccch-HHhccCCCCCEEeCCCCcc-cCCc
Confidence 9975 4455 5689999999999999984 4444
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.3e-14 Score=165.40 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=99.9
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEec
Q 003330 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 747 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 747 (829)
..|+.|+|++| .+..+|. ++.+++|+.|++++|. +..+|..++++++|+.|+|++|. +..+| .++.+++|+.|+|
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEEC
Confidence 35889999998 5666887 9999999999999986 55899999999999999999965 44588 8999999999999
Q ss_pred cCCcCCCCC--ccccCCCccccEeeccccccCccCCccc----ccccccCcee
Q 003330 748 SQCVSLSCL--PQGIGNLIRLEKIDMRECSQIWSLPKSV----NSLKSLRQVI 794 (829)
Q Consensus 748 ~~~~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~ 794 (829)
++|. +..+ |..++.+++|+.|++++|+ +..+|... ..+++|+.|+
T Consensus 516 s~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 9975 4555 8899999999999999999 55555443 3377887775
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=1.2e-11 Score=135.30 Aligned_cols=311 Identities=12% Similarity=0.029 Sum_probs=185.6
Q ss_pred cccccccchhhHHHHHHhhc---CCCce--EEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003330 182 NLMGIGMALGKNKVKEMVIG---RDDLS--VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~~~~~--vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+..++||+.+++++.+++.. +.... .+.|+|++|+||||||+.+++. ........+++++.+...+...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 35689999999999998864 23334 8999999999999999999953 32221234557887777788888888
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCCh--HhHHHhhhcC--------CCceEEEEeeccccc-
Q 003330 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSL--AVLEQLIFRV--------PGCKTLVVSRFKFST- 323 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~--~~~~~l~~~~--------~gs~iivTtR~~~~~- 323 (829)
++..++....................+ .+++.+||||+++.. +.+..+.... .+..||++|+.....
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 888875432111111111111222222 467899999999853 4444443321 366777777765321
Q ss_pred ---------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHc---------CCchhHHHHHHH-Hhc
Q 003330 324 ---------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKC---------KGLPLALKVIGA-SLR 384 (829)
Q Consensus 324 ---------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~-~l~ 384 (829)
.....+.+++++.++..+++...+..... .....++....+++.+ +|.|..+..+.. ...
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 12237999999999999999877532100 1123356788899999 788754443322 221
Q ss_pred -----CCC---hhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCC---CCCccCHHHHHHHHH
Q 003330 385 -----EQP---EMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFP---EDKKIPLEVLINMWV 453 (829)
Q Consensus 385 -----~~~---~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp---~~~~i~~~~l~~~w~ 453 (829)
+.. ......+...... ..+.-.+..|+.+.+.++..++.+. .+..+....+...+.
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 211 2223333332211 0122345678888888888777654 232456666666554
Q ss_pred Hh------cCCCHHHHHHHHHHHhhcchhhhhhh----cccCccccccccccchhhHHHHHHHHHhh
Q 003330 454 EI------HDLDEEEAFAILVELSDRNLLKIVKD----ARAGDMYSSYYEISVTQHDVLRDLALHLS 510 (829)
Q Consensus 454 a~------~~~~~~~~~~~l~~L~~~sli~~~~~----~~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 510 (829)
.. ..+.......++.+|.+.++|..... +..|... .+...+..|+++..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~--~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 320 IVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTT--LISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CE--EEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCcee--EEEeCCCHHHHHHHHHHHHH
Confidence 42 23356778889999999999987543 1112111 11223457788776665544
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=5.8e-14 Score=162.92 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=145.9
Q ss_pred cCCceEEEEEeccCCCccccChhhhc-CC-CCceEEEccccCCccccCCC-cccCCccccceeeecccccCCC-----CC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIEN-ME-KLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQL-----PK 634 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~-l~-~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~l-----p~ 634 (829)
.+++|+.|.|..+.. ....+..+.. ++ +|++|++.+|.. .....+ ....++++|++|++++|.+... +.
T Consensus 110 ~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIV-SDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBC-CHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred hCCCCCeEEeeccEe-cHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 467777777765533 2222333444 33 377777776641 111111 1123567777777777765432 22
Q ss_pred CccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEecccccc---ccchhh
Q 003330 635 SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSL---QELPAD 711 (829)
Q Consensus 635 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~---~~lp~~ 711 (829)
....+++|++|++++|.+.......+......+++|+.|++++|. +..+|..+..+++|+.|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 234567777777777665422222333333456777777777764 4446666777777887777754322 223345
Q ss_pred ccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCC--CCccccCCCccccEeeccccccCccCCcccccccc
Q 003330 712 IGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLS--CLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKS 789 (829)
Q Consensus 712 l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 789 (829)
+..+++|+.|.++++ ....+|..+..+++|++|++++|. +. .++..+..+++|++|++++|..-..++.....+++
T Consensus 266 l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 667777777777763 445567667777888888888776 32 12233577788888888754322344444456677
Q ss_pred cCceeccc----------h---hhhhhhhhhhhCCCceEEec
Q 003330 790 LRQVICEE----------D---VSWAWKDLEKTLPNLHVQVP 818 (829)
Q Consensus 790 L~~L~~~~----------~---~~~~~~~l~~~lp~L~~~~~ 818 (829)
|+.|++.+ + .......+...+|+|+....
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 77777763 2 22234444556777776655
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=1.8e-13 Score=158.65 Aligned_cols=258 Identities=13% Similarity=0.026 Sum_probs=135.7
Q ss_pred cCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKM 642 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 642 (829)
.+++|+.|.+..+. ...+|..+.++++|+.|.+.++.........+..+..+++|+.|+++++....+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE--ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCB--GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCcc--HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 34555555554432 2335555566666666665432211110111122333444444444443333344434444444
Q ss_pred ceEEeeeccccccc---------------------cccccccCCcccccccccccc----------cccccc--CCcccc
Q 003330 643 QKISFVLCKINNSL---------------------DQSVVDLPKTLPCLTELTFDH----------CDDLMK--LPPSIC 689 (829)
Q Consensus 643 ~~L~L~~~~~~~~~---------------------~~~~~~~~~~~~~L~~L~L~~----------~~~~~~--lp~~i~ 689 (829)
++|++++|.+.... ...+..+...+++|++|++++ |..++. ++....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 44444444321110 011111112356666666663 433331 222234
Q ss_pred CcCCCcEEEeccccccccchhhccC-CCCCCEEeccc---CCcCCcc------cccccCCCCCCEEeccCCcC-CC-CCc
Q 003330 690 GLQSLKNLSVTNCHSLQELPADIGK-MKSLQILRLYA---CPHLRTL------PARICELVCLKYLNISQCVS-LS-CLP 757 (829)
Q Consensus 690 ~l~~L~~L~l~~~~~~~~lp~~l~~-l~~L~~L~l~~---~~~l~~l------p~~~~~l~~L~~L~l~~~~~-l~-~lp 757 (829)
.+++|++|+++.+......+..+.. +++|++|++++ |+.+... +..+..+++|++|++++|.. +. ..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4677777777544433333444444 77888888863 4455543 23356688888888876553 22 122
Q ss_pred ccc-CCCccccEeeccccccCc-cCCcccccccccCceeccchhh--hhhhhhhhhCCCceEEeccccc
Q 003330 758 QGI-GNLIRLEKIDMRECSQIW-SLPKSVNSLKSLRQVICEEDVS--WAWKDLEKTLPNLHVQVPAKCF 822 (829)
Q Consensus 758 ~~l-~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~~~~~~~--~~~~~l~~~lp~L~~~~~~~~~ 822 (829)
..+ ..+++|++|++++|.+.. .++..+..+++|+.|++++|.. .....+...+|+|+.....+|.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 223 347889999999988443 4555667889999999988852 2244555678999887776664
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=3.5e-12 Score=127.06 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=119.6
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEE
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 721 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 721 (829)
+.++++++.+.. ++.. ..+.++.|+|++|......| ..+..+++|++|++++|......+..+.++++|++|
T Consensus 14 ~~l~~s~n~l~~-iP~~------~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEH------IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSS-CCSC------CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCccc-CccC------CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 578888776553 2222 14567899999986444334 347899999999999987554445689999999999
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhh
Q 003330 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~ 800 (829)
++++|......|..+..+++|++|+|++|......|..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|..
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999877666666799999999999999766555577899999999999999996555688899999999999887753
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=7.1e-14 Score=162.26 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=86.2
Q ss_pred cCCceEEEEEeccCCCccccChhhh-cCCCCceEEEcccc-CCccccCCCcccCCccccceeeecccccCC-----CCCC
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIE-NMEKLRALIVINYS-TSNAALGNFSVCSNLTNLRSLWLEKVSISQ-----LPKS 635 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~-~l~~Lr~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-----lp~~ 635 (829)
.+++++.|.|..+.. ....+..+. .+++|++|++.+|. ....... ..+.++++|++|++++|.++. ++..
T Consensus 103 ~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA--AIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH--HHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH--HHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 577888888877653 222333443 68888888888773 2111111 123467888889888887653 3333
Q ss_pred ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccc
Q 003330 636 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 636 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 702 (829)
...+++|++|++++|. .......+..+...+++|++|++++|..+..+|..+..+++|+.|+++.|
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3467788888888775 11111222222234688889998888666667777788888888886654
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=4.3e-12 Score=127.29 Aligned_cols=130 Identities=22% Similarity=0.208 Sum_probs=109.3
Q ss_pred cccccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 667 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
.++|+.|+|++|......|..+.++++|++|+|++|.. ..+| ..+..+++|+.|++++|......+..+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 48899999999976666688899999999999999875 5555 557899999999999976544444457899999999
Q ss_pred eccCCcCCCCCccccCCCccccEeeccccccCccCC-cccccccccCceeccchh
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~ 799 (829)
+|++| .+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++.+|.
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 99996 566899999999999999999998 55665 568889999999988774
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.5e-12 Score=138.84 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=108.8
Q ss_pred eccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccC-CccccceeeecccccCCCCC-CccccCCCceEEeeec
Q 003330 573 NFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCS-NLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLC 650 (829)
Q Consensus 573 ~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~ 650 (829)
+.+.+....+|..+. ++++.|++++|....... ..+. ++++|++|+|++|.++.++. .+..+++|++|+|++|
T Consensus 24 ~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 24 SCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp ECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCCCCcCccCccCC--CCCCEEECCCCCCCccCh---hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 344444556665443 457788887776554332 2244 67788888888888887765 3777888888888877
Q ss_pred cccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhc----cCCCCCCEEecccC
Q 003330 651 KINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADI----GKMKSLQILRLYAC 726 (829)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~l~~~ 726 (829)
.+..... ..+..+++|+.|+|++|......|..+.++++|+.|+|++|. +..+|..+ ..+++|+.|+|++|
T Consensus 99 ~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDE----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCcCCH----HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC
Confidence 7653222 223557788888888876555556677788888888888765 45555443 56788888888875
Q ss_pred CcCCccc-ccccCCCC--CCEEeccCCc
Q 003330 727 PHLRTLP-ARICELVC--LKYLNISQCV 751 (829)
Q Consensus 727 ~~l~~lp-~~~~~l~~--L~~L~l~~~~ 751 (829)
... .+| ..+..++. |+.|+|++|+
T Consensus 174 ~l~-~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 174 KLK-KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCC-CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCC-ccCHHHhhhccHhhcceEEecCCC
Confidence 543 444 45566665 3777887764
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4.5e-12 Score=126.22 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=108.7
Q ss_pred cccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccccc-ccCCCCCCEE
Q 003330 667 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYL 745 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L 745 (829)
.++|+.|++++|......+..+..+++|++|+|++|......|..+.++++|++|+|++|.. ..+|.. +..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence 36899999999864444455789999999999999986666688999999999999999654 456654 6889999999
Q ss_pred eccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhh
Q 003330 746 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 800 (829)
Q Consensus 746 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~ 800 (829)
+|++|......|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++.+|..
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999765555567799999999999999994444445688899999999887743
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.6e-12 Score=123.72 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=64.9
Q ss_pred CCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCC
Q 003330 640 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQ 719 (829)
Q Consensus 640 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 719 (829)
++|++|++++|.+.. ..++.....+++|+.|++++|. +..+ ..++.+++|++|++++|.....+|..+.++++|+
T Consensus 24 ~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 456666666555431 1111222345555555555553 3333 4455555555555555544333444444455555
Q ss_pred EEecccCCcCCccc--ccccCCCCCCEEeccCCcCCCCCcc----ccCCCccccEeeccccccCccCC
Q 003330 720 ILRLYACPHLRTLP--ARICELVCLKYLNISQCVSLSCLPQ----GIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 720 ~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
+|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. ..++|
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 55555543 23332 345555555555555542 233333 45555555555555554 34444
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.9e-12 Score=121.85 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=94.4
Q ss_pred ccccceeeecccccC--CCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCC
Q 003330 616 LTNLRSLWLEKVSIS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 693 (829)
Q Consensus 616 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~ 693 (829)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+... .....+++|++|++++|.....+|..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 356677777777766 6666666777777777777765532 22345777777777777544446766677889
Q ss_pred CcEEEeccccccccch--hhccCCCCCCEEecccCCcCCcccc----cccCCCCCCEEeccCCcCCCCCcc
Q 003330 694 LKNLSVTNCHSLQELP--ADIGKMKSLQILRLYACPHLRTLPA----RICELVCLKYLNISQCVSLSCLPQ 758 (829)
Q Consensus 694 L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~lp~ 758 (829)
|++|++++|. +..+| ..+..+++|+.|++++|... .+|. .+..+++|++|++++|. ...+|.
T Consensus 97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 9999998875 45554 67888899999999886544 4454 68888999999998864 445554
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=9.6e-11 Score=127.84 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=175.2
Q ss_pred cccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhccccccc-----cCCeEEEEEeCCCCCHHHH
Q 003330 182 NLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY-----FNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~~wv~v~~~~~~~~l 253 (829)
+..++||+.+++++.+++.. ....+.+.|+|++|+||||+|+.+++. .... ....++|++.....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36789999999999998853 356678999999999999999999953 2221 1334568888888888888
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChHh-------HHHhhh---c---CCCceEEEEee
Q 003330 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLAV-------LEQLIF---R---VPGCKTLVVSR 318 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~~-------~~~l~~---~---~~gs~iivTtR 318 (829)
...++..++...........+........+ .+++++|||||++.... +..+.. . ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999998885432211111111122333333 45689999999985431 222222 1 23567777877
Q ss_pred ccccc----------cccceEEccCCCHHHHHHHHHHhhc---CCCCCCCchhHHHHHHHHHHcC---Cchh-HHHHHHH
Q 003330 319 FKFST----------VLNDTYEVELLREDESLSLFCYSAF---GQKTIPPSANENLVKQIVKKCK---GLPL-ALKVIGA 381 (829)
Q Consensus 319 ~~~~~----------~~~~~~~l~~L~~~e~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~ 381 (829)
..... .....+.+++++.++..+++...+. .... ..++....+++.++ |.|. ++.++..
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV----LDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT----BCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC----CCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 65321 1124789999999999999987742 2221 12336777888888 9994 3333332
Q ss_pred Hhc-----CC---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCC-CccCHHHHHHHH
Q 003330 382 SLR-----EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPED-KKIPLEVLINMW 452 (829)
Q Consensus 382 ~l~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~-~~i~~~~l~~~w 452 (829)
... +. +...+..++.... ...+.-++..|+++.+..+..++....+ ..+....+.+..
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 221 11 2445555554431 2245667889999999888877743322 345555444443
Q ss_pred HHh----c--CCCHHHHHHHHHHHhhcchhhhhh
Q 003330 453 VEI----H--DLDEEEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 453 ~a~----~--~~~~~~~~~~l~~L~~~sli~~~~ 480 (829)
... + ......+..+++.|...++++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 319 KELTSTLGLEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 321 1 234567888999999999988643
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2.5e-12 Score=119.54 Aligned_cols=126 Identities=22% Similarity=0.206 Sum_probs=100.1
Q ss_pred ccccccccccccccc-ccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEE
Q 003330 667 LPCLTELTFDHCDDL-MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 745 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 745 (829)
+++|+.|++++|... +.+|..++.+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 577888888888654 4788888899999999999886 4444 678889999999999977666688877788999999
Q ss_pred eccCCcCCCCCc--cccCCCccccEeeccccccCccCCc----ccccccccCceecc
Q 003330 746 NISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK----SVNSLKSLRQVICE 796 (829)
Q Consensus 746 ~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~~ 796 (829)
++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999875 55554 678889999999999998 555554 67778888888764
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=3.4e-13 Score=158.61 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=53.2
Q ss_pred cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC
Q 003330 613 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 692 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~ 692 (829)
+..+++|+.|+|++|.+..+|..+..+++|++|+|++|.+. .++. .+..+++|++|+|++|. +..+|..|+.|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 34445555555555555555555445555555555544433 1111 11334445555555443 224454555555
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccc
Q 003330 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA 734 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 734 (829)
+|++|+|++|. +..+|..|++|++|+.|+|++|...+.+|.
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 55555555443 334444455555555555555444444433
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=5.2e-11 Score=129.88 Aligned_cols=282 Identities=14% Similarity=0.116 Sum_probs=169.7
Q ss_pred cccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhcccccccc--CCeEEEEEeCCCCCHHHHHHH
Q 003330 182 NLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF--NNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+..++||+.+++.+.+++.. ....+.+.|+|++|+||||||+.+++ .....+ ...++|++.....+...+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 45689999999999998864 35577899999999999999999995 333333 334567777666677777777
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCCh------HhHHHhhhc-----CCCceEEEEeeccccc
Q 003330 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSL------AVLEQLIFR-----VPGCKTLVVSRFKFST 323 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~------~~~~~l~~~-----~~gs~iivTtR~~~~~ 323 (829)
++..++....................+ .+++.+||||+++.. +.+..+... ..+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 777764322111111111122222223 355899999999753 233333221 2245667777755321
Q ss_pred ----------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcC---CchhHH-HHHHHHhc-----
Q 003330 324 ----------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCK---GLPLAL-KVIGASLR----- 384 (829)
Q Consensus 324 ----------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~---g~PLai-~~~~~~l~----- 384 (829)
.....+++++++.++..+++...+..... .....++....+++.++ |.|..+ .++.....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 11247999999999999999876421110 11223457777888887 998844 43332221
Q ss_pred CC---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCC-C-CccCHHHHHHHHHH----h
Q 003330 385 EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPE-D-KKIPLEVLINMWVE----I 455 (829)
Q Consensus 385 ~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~-~-~~i~~~~l~~~w~a----~ 455 (829)
+. +...+..++... ....+.-.+..+|...+..+..++.+.+ + ..+....+.+.... .
T Consensus 256 ~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI-------------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp TCSSCCHHHHHHHHHHH-------------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH-------------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 234444444432 1234666788899998888887775432 2 22334444333221 1
Q ss_pred c--CCCHHHHHHHHHHHhhcchhhhh
Q 003330 456 H--DLDEEEAFAILVELSDRNLLKIV 479 (829)
Q Consensus 456 ~--~~~~~~~~~~l~~L~~~sli~~~ 479 (829)
+ .+.......+++.|.+.++++..
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 12346677889999999998754
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=5.1e-13 Score=157.11 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCCceEEEccccCCccccCCCcccCCcc--ccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCcc
Q 003330 590 EKLRALIVINYSTSNAALGNFSVCSNLT--NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 667 (829)
Q Consensus 590 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 667 (829)
+.++.|.+.++.........+ ..-.|. ++..++++.|.+...|..+..+.+|+.|+|++|.+.. ++..+ ..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~----~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANI----FKY 246 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSC-CCGGG----GGC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhh----cCC
Confidence 457778776665433211111 011111 1223334445555556678889999999999988763 22222 358
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEec
Q 003330 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 747 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 747 (829)
++|++|+|++|. +..+|..|++|++|++|+|++|. +..+|..|++|++|++|+|++|. +..+|..++.+++|++|+|
T Consensus 247 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 899999999985 55899999999999999999987 45889999999999999999964 5688999999999999999
Q ss_pred cCCcCCCCCccccCCCc-cccEeeccccccCccCCcccc
Q 003330 748 SQCVSLSCLPQGIGNLI-RLEKIDMRECSQIWSLPKSVN 785 (829)
Q Consensus 748 ~~~~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~lp~~l~ 785 (829)
++|.....+|..+..+. .+..|++++|.+.+.+|..+.
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 99876666776665443 233478999987777776543
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=2.4e-13 Score=157.71 Aligned_cols=250 Identities=14% Similarity=0.054 Sum_probs=140.5
Q ss_pred cceEEEeeeCCcccccc--ccccCCceEEEEEeccCC-CccccChhhhcCCCCceEEEccccCCccccCCCcc-cCCccc
Q 003330 543 NAQIVSIHTGDMREMDW--FRMEFPKAEVLILNFSST-EEYFLPPFIENMEKLRALIVINYSTSNAALGNFSV-CSNLTN 618 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~--~~~~~~~l~~l~L~~~~~-~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~-l~~l~~ 618 (829)
..+.+.+....+..... +...+++|+.|.|..+.. ....++..+.++++|++|++.+|.........+.. ...+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 45677776554433222 222589999999987743 22235566678999999999988744333222322 346789
Q ss_pred cceeeecccc--cC--CCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccc--------------
Q 003330 619 LRSLWLEKVS--IS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDD-------------- 680 (829)
Q Consensus 619 L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-------------- 680 (829)
|+.|++++|. ++ .++.-+..+++|++|++++|..... ++.....+++|+.|++.+|..
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 9999999986 22 1222234579999999998843221 233334578888887654421
Q ss_pred -----c-----------ccCCccccCcCCCcEEEecccccccc-chhhccCCCCCCEEecccCCcCCcccccccCCCCCC
Q 003330 681 -----L-----------MKLPPSICGLQSLKNLSVTNCHSLQE-LPADIGKMKSLQILRLYACPHLRTLPARICELVCLK 743 (829)
Q Consensus 681 -----~-----------~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 743 (829)
+ ..+|..+..+++|++|++++|..... ++..+.++++|++|++++|.....++.....+++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 1 11222233566777777777662211 223345677777777776622122222233467777
Q ss_pred EEeccC--------CcCCCC--CccccCCCccccEeeccccccCccCCcccc-cccccCceecc
Q 003330 744 YLNISQ--------CVSLSC--LPQGIGNLIRLEKIDMRECSQIWSLPKSVN-SLKSLRQVICE 796 (829)
Q Consensus 744 ~L~l~~--------~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~~~ 796 (829)
+|++++ |+.++. +......+++|+.|.+..|......+..+. .+++|+.|++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 777733 222221 111112366777776655553332222332 46677777766
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.5e-12 Score=118.55 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=72.3
Q ss_pred CccccceeeecccccC--CCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC
Q 003330 615 NLTNLRSLWLEKVSIS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 692 (829)
Q Consensus 615 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~ 692 (829)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+.. + ..++.++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~-~~~~~l~ 64 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----------------------------I-ANLPKLN 64 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----------------------------C-TTCCCCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----------------------------c-hhhhcCC
Confidence 3467777888887777 677666666666666666554332 1 2345555
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccc--ccccCCCCCCEEeccCCcCCCCCcc----ccCCCccc
Q 003330 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICELVCLKYLNISQCVSLSCLPQ----GIGNLIRL 766 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~l~~l~~L 766 (829)
+|++|++++|.....+|..+..+++|++|++++|.. ..+| ..+..+++|++|++++|. +..+|. .+..+++|
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCc
Confidence 566666665554333555555566666666666443 3222 455666666666666653 333333 45666666
Q ss_pred cEeecc
Q 003330 767 EKIDMR 772 (829)
Q Consensus 767 ~~L~l~ 772 (829)
+.|+++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 666654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.8e-11 Score=119.02 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=79.0
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
++++++++.++.+|..+.. +|++|++++|.+...... ..+..+++|++|+|++|...+..|..+.++++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7889999999999876643 788888887765432221 01234666666666666544444556666666666666
Q ss_pred ccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCc
Q 003330 700 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCV 751 (829)
Q Consensus 700 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 751 (829)
++|......|..+.++++|++|++++|......|..+..+++|++|++++|+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6665443334446666666666666655555555556666666666666654
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=4.6e-11 Score=116.12 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
++++++++.++.+|..+. ++|++|++++|.+ ..+|..+.++++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-----------------------------~~ip~~~~~l~~L~~L~L 61 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-----------------------------TLVPKELSNYKHLTLIDL 61 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-----------------------------CSCCGGGGGCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-----------------------------chhHHHhhcccCCCEEEC
Confidence 577888888888886543 3555555554443 345555666666666666
Q ss_pred ccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeeccccc
Q 003330 700 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECS 775 (829)
Q Consensus 700 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 775 (829)
++|......+..|.++++|++|++++|......|..+..+++|++|+|++|. +..+|. .+..+++|+.|++++|+
T Consensus 62 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 6655443334456666666666666655444334456666666666666643 344444 35666677777777665
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=6e-10 Score=112.92 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=114.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCC------------------eEEEEEe
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN------------------RILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~------------------~~~wv~v 244 (829)
..++||+..++.+.+++......+.+.|+|++|+||||+|+.+++.......+.. ..+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecC
Confidence 4579999999999999976555678999999999999999999864221111100 0111111
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh----cCCCceEEEEee
Q 003330 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtR 318 (829)
... ........++..+... ...+++.+||+||++. .+.++.+.. ..++..+|+||+
T Consensus 103 ~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 103 ASR-TKVEDTRDLLDNVQYA-----------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp TCG-GGHHHHHHHHHSCCCS-----------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred ccc-ccHHHHHHHHHHhhhc-----------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 111 1111112222221100 0135689999999975 344554443 234678888887
Q ss_pred ccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHh
Q 003330 319 FKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (829)
Q Consensus 319 ~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 383 (829)
..... .....+++++++.++..+++...+..... ...++....|++.|+|.|..+..+...+
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65422 22457999999999999999887754321 2234578899999999999988776543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.8e-11 Score=114.95 Aligned_cols=130 Identities=11% Similarity=0.080 Sum_probs=83.2
Q ss_pred cccccccccccccccccCCccccCcC-CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccc-cCCCCCCE
Q 003330 667 LPCLTELTFDHCDDLMKLPPSICGLQ-SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI-CELVCLKY 744 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~ 744 (829)
+++|+.|++++|. +..+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|. +..+|..+ ..+++|++
T Consensus 18 ~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 4455566666553 334443 44443 77777777765 3344 466777777777777754 34455443 67777777
Q ss_pred EeccCCcCCCCCcc--ccCCCccccEeeccccccCccCCcc----cccccccCceeccchhhhhh
Q 003330 745 LNISQCVSLSCLPQ--GIGNLIRLEKIDMRECSQIWSLPKS----VNSLKSLRQVICEEDVSWAW 803 (829)
Q Consensus 745 L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~~~~~~~~~~ 803 (829)
|++++| .+..+|. .+..+++|+.|++++|+ +..+|.. +..+++|+.|++..+.....
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 777775 3456665 67777788888888887 4566664 67778888888777654443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=3.9e-11 Score=114.88 Aligned_cols=129 Identities=21% Similarity=0.186 Sum_probs=68.9
Q ss_pred cCCccccceeeecccccCCCCCCccccC-CCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCc
Q 003330 613 CSNLTNLRSLWLEKVSISQLPKSSIPLK-KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 691 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l 691 (829)
+.++++|+.|++++|.++.+|. +..+. +|++|++++|.+.. + ..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-----------------------------~-~~l~~l 63 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-----------------------------L-DGFPLL 63 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-----------------------------E-CCCCCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-----------------------------c-cccccC
Confidence 3455667777777777666643 33332 55555555544321 2 234455
Q ss_pred CCCcEEEeccccccccchhh-ccCCCCCCEEecccCCcCCcccc--cccCCCCCCEEeccCCcCCCCCccc----cCCCc
Q 003330 692 QSLKNLSVTNCHSLQELPAD-IGKMKSLQILRLYACPHLRTLPA--RICELVCLKYLNISQCVSLSCLPQG----IGNLI 764 (829)
Q Consensus 692 ~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~----l~~l~ 764 (829)
++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|+.|++++|+ +..+|.. +..++
T Consensus 64 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 64 RRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVP 140 (176)
T ss_dssp SSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCT
T ss_pred CCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCC
Confidence 555555555544 2333322 2555566666665543 344444 45556666666666643 2344443 56666
Q ss_pred cccEeeccccc
Q 003330 765 RLEKIDMRECS 775 (829)
Q Consensus 765 ~L~~L~l~~~~ 775 (829)
+|+.|++++|.
T Consensus 141 ~L~~Ld~~~n~ 151 (176)
T 1a9n_A 141 QVRVLDFQKVK 151 (176)
T ss_dssp TCSEETTEECC
T ss_pred ccceeCCCcCC
Confidence 66777666665
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=8.5e-11 Score=114.24 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=99.2
Q ss_pred ceEEeeeccccccccccccccCCccccccccccccccccccCCc--cccCcCCCcEEEeccccccccchhhccCCCCCCE
Q 003330 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP--SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQI 720 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 720 (829)
++++++++.+.. ++..+ .++|+.|++++|. +..+|. .+..+++|++|++++|......|..+.++++|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~------~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI------PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSS-CCSCC------CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCc-CccCC------CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 678888776532 22221 3489999999984 555554 3889999999999998766666788999999999
Q ss_pred EecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCcc
Q 003330 721 LRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWS 779 (829)
Q Consensus 721 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 779 (829)
|++++|......|..+..+++|++|+|++|......|..+..+++|++|++++|+....
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999776665566688899999999999766556677888999999999999985543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2e-10 Score=111.55 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=100.6
Q ss_pred cccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCC
Q 003330 671 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 750 (829)
Q Consensus 671 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 750 (829)
+.++++++ .+..+|..+. ++|+.|++++|. +..+|..+.++++|+.|++++|......+..+..+++|++|+|++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34666665 4677887553 689999999976 5688889999999999999997766655667999999999999997
Q ss_pred cCCCCCccccCCCccccEeeccccccCccCCc-ccccccccCceeccchh
Q 003330 751 VSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDV 799 (829)
Q Consensus 751 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~~~~~~ 799 (829)
......|..+..+++|++|+|++|. +..+|. .+..+++|+.|++.+|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 6444444569999999999999999 566665 57889999999988774
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2.7e-10 Score=109.10 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=75.6
Q ss_pred cceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCCcEE
Q 003330 619 LRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNL 697 (829)
Q Consensus 619 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L 697 (829)
.+.++++++.++.+|..+. ++|++|++++|.+. .+| ..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~-----------------------------~~~~~~~~~l~~L~~L 57 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-----------------------------SLPHGVFDKLTQLTKL 57 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCC-----------------------------CCCTTTTTTCTTCSEE
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCccc-----------------------------EeCHHHhcCcccccEE
Confidence 4677777877777775432 45555555544432 232 234566677777
Q ss_pred EeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccc-cCCCccccEeecccccc
Q 003330 698 SVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 698 ~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~ 776 (829)
++++|......+..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|.. +..+++|++|++++|+.
T Consensus 58 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 58 SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 77766533222334566777777777775443333334566777777777775 34455544 46677777777777764
Q ss_pred C
Q 003330 777 I 777 (829)
Q Consensus 777 ~ 777 (829)
.
T Consensus 137 ~ 137 (177)
T 2o6r_A 137 D 137 (177)
T ss_dssp C
T ss_pred e
Confidence 3
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=5e-12 Score=123.78 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=51.3
Q ss_pred cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC
Q 003330 613 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 692 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~ 692 (829)
+..+++|++|++++|.++.+| .+..+++|++|++++|.+.. + +.....+++|+.|++++|. +..+| .+..++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l----~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-I----ENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-C----SSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-c----cchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 445566666666666666665 55556666666666554431 1 1111223444444444442 22333 344555
Q ss_pred CCcEEEeccccccccch--hhccCCCCCCEEecccCC
Q 003330 693 SLKNLSVTNCHSLQELP--ADIGKMKSLQILRLYACP 727 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~ 727 (829)
+|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 55555555543 22222 234445555555555443
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=7.5e-09 Score=103.05 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=113.1
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++++.+++... ....+.|+|++|+|||++|+.+++.. ....+....+.++.+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhc
Confidence 45789999999999998754 33348999999999999999998531 12233333334444444444443333222211
Q ss_pred CCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhh---h-cCCCceEEEEeeccccc-----cccceEEc
Q 003330 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKFST-----VLNDTYEV 331 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtR~~~~~-----~~~~~~~l 331 (829)
... ...+++.+||+||++.. +.++.+. . ..++.++|+||+..... .....+++
T Consensus 95 ~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 95 TAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp SCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred ccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 100 01357889999999853 3333333 2 24567888888765422 22347899
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 003330 332 ELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (829)
Q Consensus 332 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 380 (829)
++++.++..+++...+..... ...++....+++.++|.|..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999887643221 1234577889999999999655443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.6e-09 Score=103.63 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=95.6
Q ss_pred ccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccC
Q 003330 670 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQ 749 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 749 (829)
.+.++++++ .+..+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566655 466677544 47999999999875443445678999999999999765443344578999999999999
Q ss_pred CcCCCCCcc-ccCCCccccEeeccccccCccCCcc-cccccccCceeccchhh
Q 003330 750 CVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKS-VNSLKSLRQVICEEDVS 800 (829)
Q Consensus 750 ~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~~~~~~~ 800 (829)
|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 75 455554 47899999999999998 5667655 57799999999988753
No 147
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.96 E-value=2.3e-10 Score=99.37 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHhhhhhHHHHHhhCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 003330 11 IAAELLKMLISICRRSS-LCKSSAEQLRTTIEQLLPTIHEIKYSGVELP--PIRQTQLDHLSETLKDGIELCRKVLASTR 87 (829)
Q Consensus 11 ~~~~~~~~l~s~~~~~~-~~~~~~~~~~~~l~~~l~~i~~~~~~~~e~~--~~~~~~~~~~~~~l~~~~~~~~d~ld~~~ 87 (829)
+++.++.++.+++.+++ ...|+.+++ ++|++.|.+|++++. +++.+ +..+++++.|++++|+++|++||++|+|.
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i-~~Lk~eL~~m~a~L~-da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNI-EDLGKELESMNAALI-KIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHHHHH-HHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999998888 778888888 999999999999999 66665 56889999999999999999999999987
Q ss_pred hhh
Q 003330 88 WNV 90 (829)
Q Consensus 88 ~~~ 90 (829)
++.
T Consensus 80 ~~~ 82 (115)
T 3qfl_A 80 VQV 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=4e-11 Score=117.31 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=76.3
Q ss_pred ccCCCceEEeeeccccccccc--cccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCC
Q 003330 638 PLKKMQKISFVLCKINNSLDQ--SVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKM 715 (829)
Q Consensus 638 ~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 715 (829)
...+++.+++..+.+....+. .++.....+++|++|++++|. +..+| .+.++++|++|++++|. +..+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcC
Confidence 345566666665555443221 011122345666777776663 44455 56666777777776654 34566555556
Q ss_pred CCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCcc--ccCCCccccEeeccccccCcc
Q 003330 716 KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ--GIGNLIRLEKIDMRECSQIWS 779 (829)
Q Consensus 716 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~ 779 (829)
++|+.|++++|. +..+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|++.+.
T Consensus 93 ~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 667777776653 33444 45666667777766643 344433 466666677777766664333
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=5e-10 Score=119.07 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=53.5
Q ss_pred cCCceEEEEEeccCCCccccChhhhc-CCCCceEEEccccCC--ccccCC---------------CcccCC--------c
Q 003330 563 EFPKAEVLILNFSSTEEYFLPPFIEN-MEKLRALIVINYSTS--NAALGN---------------FSVCSN--------L 616 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~~~-l~~Lr~L~l~~~~~~--~~~~~~---------------~~~l~~--------l 616 (829)
.+++++.|.+...-. ...+ ..+.. +++|+.|++++|... ...... -..|.+ +
T Consensus 23 ~~~~l~~L~l~g~i~-~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 23 EANSITHLTLTGKLN-AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHHCSEEEEEEEEC-HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hhCceeEEEEecccc-HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 355677777754321 1111 23444 788999999988654 110000 023456 7
Q ss_pred cccceeeecccccCCCCCC-ccccCCCceEEeeecccc
Q 003330 617 TNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKIN 653 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~ 653 (829)
++|+.|++.+ .++.+++. |..+++|+.|++..+.+.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 8888888887 77777665 677888888888776654
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=4.8e-09 Score=99.78 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=71.5
Q ss_pred cccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccccc-ccCCCCCCEEeccC
Q 003330 671 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNISQ 749 (829)
Q Consensus 671 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~ 749 (829)
+.++++++ .++.+|..+. ++|+.|++++|......|..+.++++|++|+|++|. +..+|.. +..+++|++|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 34555554 3566776553 778888888776554446677788888888888754 4445544 56788888888887
Q ss_pred CcCCCCCccc-cCCCccccEeeccccccCccCCc
Q 003330 750 CVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPK 782 (829)
Q Consensus 750 ~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~ 782 (829)
| .+..+|.. +..+++|++|+|++|+ +...+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 5 45556654 7778888888888887 444443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=6.1e-09 Score=98.73 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=69.5
Q ss_pred ccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEecc
Q 003330 670 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNIS 748 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~ 748 (829)
.+.|+++++ .+..+|..+ .++|++|++++|......|..+..+++|++|++++|.. ..+|. .+..+++|++|+|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 345666665 455677655 37788888887765544466777888888888887654 34444 45778888888888
Q ss_pred CCcCCCCCcc-ccCCCccccEeecccccc
Q 003330 749 QCVSLSCLPQ-GIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 749 ~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 776 (829)
+| .+..+|. .+..+++|+.|+|++|++
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 75 4455554 477788888888888873
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=3.1e-09 Score=112.83 Aligned_cols=201 Identities=13% Similarity=0.021 Sum_probs=112.6
Q ss_pred hhhhc--------CCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCceEEeeeccccc
Q 003330 584 PFIEN--------MEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINN 654 (829)
Q Consensus 584 ~~~~~--------l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~ 654 (829)
.+|.+ |++|+.|.+.+ ...... -..|.+|++|+.|++++|.+..+++. |..+.++..+.+.......
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~---~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIKNIE---DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCCEEC---TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred HHhcccccccccccCCCcEEECCc-cccchh---HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 45778 99999999976 333222 13578899999999999998877765 6666666655544311100
Q ss_pred cccccccccCCcccccc--------------------------ccccccccccccCCccccCcCCCcEEEeccccccccc
Q 003330 655 SLDQSVVDLPKTLPCLT--------------------------ELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQEL 708 (829)
Q Consensus 655 ~~~~~~~~~~~~~~~L~--------------------------~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l 708 (829)
.........+..+.+|+ .+.+.++-...........+++|+.|+|++|. +..+
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I 241 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTI 241 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEE
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-ccee
Confidence 00000000001122222 22222210000000000126777777777655 4445
Q ss_pred h-hhccCCCCCCEEecccCCcCCcccc-cccCCCCCC-EEeccCCcCCCCCc-cccCCCccccEeeccccccCccCCc-c
Q 003330 709 P-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLK-YLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQIWSLPK-S 783 (829)
Q Consensus 709 p-~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~-~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~lp~-~ 783 (829)
| ..|.++++|+.|++.++ +..++. .|..+++|+ .+.+.+ .+..++ ..|.+|++|+.|++++|. +..++. .
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~a 316 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDEL 316 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTT
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhh
Confidence 4 45677777777777764 444543 466777777 777765 344454 447777777777777766 444443 5
Q ss_pred cccccccCcee
Q 003330 784 VNSLKSLRQVI 794 (829)
Q Consensus 784 l~~l~~L~~L~ 794 (829)
+.++++|+.++
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 66677777664
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=4.9e-08 Score=103.32 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=112.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++.+.+++..+.... +.++|++|+||||+|+.+++.. ....+...+++++.+.......+ ++++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHEL-LGRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHH-HGGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHh-cCCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 457899999999999987543334 8999999999999999999531 12222223334444443343333 22222221
Q ss_pred CCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh--HhHHHhhh----cCCCceEEEEeeccccc-----cccceEE
Q 003330 263 GCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKFST-----VLNDTYE 330 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtR~~~~~-----~~~~~~~ 330 (829)
.... .. .+++.++|+||++.. +.++.+.. ..+++.+|+||+..... .....++
T Consensus 98 ~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 98 QKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 0000 01 345889999999853 33333332 23467888888665421 3345899
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHHH
Q 003330 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGAS 382 (829)
Q Consensus 331 l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 382 (829)
+++++.++..+++...+..... ...++....+++.++|.|. |+..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999887642221 1224578899999999995 45555443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1.6e-08 Score=95.77 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=64.3
Q ss_pred ccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEE
Q 003330 618 NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNL 697 (829)
Q Consensus 618 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 697 (829)
..+.++++++.++.+|..+. ++|++|+|++|.+. ...|..+.++++|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~----------------------------~~~~~~~~~l~~L~~L 59 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQIT----------------------------KLEPGVFDRLTQLTRL 59 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC----------------------------CCCTTTTTTCTTCSEE
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCC----------------------------ccChhhhcCcccCCEE
Confidence 35788888888888886553 55666666554433 2234556667777777
Q ss_pred Eeccccccccch-hhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEeccCCc
Q 003330 698 SVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCV 751 (829)
Q Consensus 698 ~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 751 (829)
+|++|.. ..+| ..+..+++|++|+|++|.. ..+|. .+..+++|++|+|++|+
T Consensus 60 ~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 60 DLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCc-CccChhhccCCCCCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777653 3443 3456777777777777543 33443 46677777777777754
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.79 E-value=3e-07 Score=97.30 Aligned_cols=242 Identities=17% Similarity=0.090 Sum_probs=142.1
Q ss_pred ccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++|++..+.++.+++.. ......+.|+|++|+|||++|+.+++. .. ..+.+++.+......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~----~~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LG----VNLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HT----CCEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hC----CCEEEEeccccCChHHHHH---
Confidence 4579999988888887752 234567899999999999999999953 22 2233554443333333222
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH--hHHHhhh----c------------------CCCceEE
Q 003330 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIF----R------------------VPGCKTL 314 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~~~~l~~----~------------------~~gs~ii 314 (829)
.+.. ...+..+|+||+++... ....+.. . .++..+|
T Consensus 83 -~l~~-------------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 83 -ILAN-------------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -HHTT-------------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -HHHH-------------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111 01345689999998642 2232221 1 0234566
Q ss_pred EEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCC--
Q 003330 315 VVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQ-- 386 (829)
Q Consensus 315 vTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-- 386 (829)
.||...... .....+.+++++.++..+++...+..... ...++....+++.++|.|..+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666544321 12357899999999999999887644322 2234578899999999998887665544211
Q ss_pred -------ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCC
Q 003330 387 -------PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLD 459 (829)
Q Consensus 387 -------~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~ 459 (829)
+......+... +...+..+++..+..+..+.....+..+....+.+. -++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~------------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~----lgi~ 277 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA------------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATA----LSED 277 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH------------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHH----TTSC
T ss_pred HhcCCCCCHHHHHHHHHH------------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHH----hCCC
Confidence 11222222222 222345566667777766554444444444444332 3455
Q ss_pred HHHHHHHHHH-Hhhcchhhh
Q 003330 460 EEEAFAILVE-LSDRNLLKI 478 (829)
Q Consensus 460 ~~~~~~~l~~-L~~~sli~~ 478 (829)
.......++. +++.++++.
T Consensus 278 ~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 278 PGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp HHHHHHHTHHHHHHTTSEEE
T ss_pred HHHHHHHHhHHHHHhcchhc
Confidence 5555555555 667777653
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=2.8e-08 Score=94.50 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=63.0
Q ss_pred ceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003330 620 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 620 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
+.++++++.++.+|..+. ++|++|+|++|.+. ...|..+.++++|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L 64 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQIT----------------------------KLEPGVFDHLVNLQQLYF 64 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcc----------------------------ccCHHHhcCCcCCCEEEC
Confidence 678888888888887653 55666666554433 223445666777777777
Q ss_pred ccccccccchh-hccCCCCCCEEecccCCcCCccccc-ccCCCCCCEEeccCCc
Q 003330 700 TNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNISQCV 751 (829)
Q Consensus 700 ~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 751 (829)
++|. +..+|. .+.++++|++|+|++|. +..+|.. +..+++|++|+|++|+
T Consensus 65 s~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 65 NSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 7664 444443 34667777777777744 3344443 6677777777777753
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=4.3e-07 Score=96.11 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=109.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++.+.+++..+ ....+.++|++|+||||+|+.+++.-. ...+...++.+..+...+...+. ..+..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 101 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVIR-EKVKEFA 101 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTTH-HHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHHH-HHHHHHH
Confidence 45799999999999888754 444489999999999999999995311 11221122233333211111111 1111110
Q ss_pred CCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh----cCCCceEEEEeeccccc-----cccceEEc
Q 003330 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKFST-----VLNDTYEV 331 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtR~~~~~-----~~~~~~~l 331 (829)
.... ...+++.++|+||++.. +.++.+.. ..+++++|+||...... .....+++
T Consensus 102 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 102 RTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred hhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 0000 01256889999999853 34444432 23467888887665421 23347899
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 003330 332 ELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGAS 382 (829)
Q Consensus 332 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 382 (829)
.+++.++..+++...+..... ...++....+++.++|.|..+..+...
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999887643322 233557888999999999866554443
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=1.4e-09 Score=116.93 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=85.1
Q ss_pred CCCCceEEEccccCCccccCCCc-ccC-CccccceeeecccccCC--CCCCccccCCCceEEeeeccccccccccccccC
Q 003330 589 MEKLRALIVINYSTSNAALGNFS-VCS-NLTNLRSLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLP 664 (829)
Q Consensus 589 l~~Lr~L~l~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 664 (829)
+++|+.|++.+|.........+. .+. ..++|+.|+|++|.++. +..-...+++|++|+|++|.+.......+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888765543222211 111 23678888888887752 222223456777777777765433222221111
Q ss_pred -Cccccccccccccccccc----cCCccccCcCCCcEEEeccccccc----cchhhccCCCCCCEEecccCCcCC----c
Q 003330 665 -KTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPHLR----T 731 (829)
Q Consensus 665 -~~~~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~l~----~ 731 (829)
...++|+.|+|++|.... .++..+..+++|++|+|++|.... .++..+...++|++|+|++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 124556666666664221 233444556666666666655321 123445555566666666654332 2
Q ss_pred ccccccCCCCCCEEeccCCc
Q 003330 732 LPARICELVCLKYLNISQCV 751 (829)
Q Consensus 732 lp~~~~~l~~L~~L~l~~~~ 751 (829)
++..+...++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 23334445566666666653
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=1.4e-09 Score=116.95 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=82.8
Q ss_pred ccccceeeecccccCCC-----CCCcc-ccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccc-
Q 003330 616 LTNLRSLWLEKVSISQL-----PKSSI-PLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI- 688 (829)
Q Consensus 616 l~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i- 688 (829)
+++|+.|++++|.++.. ...+. ..++|++|+|++|.+....... +...+++|+.|+|++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 34566777777766531 11111 1256777777766654321111 11234567777777764322211112
Q ss_pred ----cCcCCCcEEEeccccccc----cchhhccCCCCCCEEecccCCcCC----cccccccCCCCCCEEeccCCcCCC--
Q 003330 689 ----CGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPHLR----TLPARICELVCLKYLNISQCVSLS-- 754 (829)
Q Consensus 689 ----~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~l~-- 754 (829)
...++|++|+|++|.... .++..+..+++|++|+|++|.... .++..+...++|++|+|++|....
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 234567777777765322 244445566677777777655322 234445556667777777654322
Q ss_pred --CCccccCCCccccEeecccccc
Q 003330 755 --CLPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 755 --~lp~~l~~l~~L~~L~l~~~~~ 776 (829)
.++..+...++|++|+|++|.+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCC
Confidence 2333444556677777777763
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=1.9e-08 Score=107.28 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=33.9
Q ss_pred ChhhhcCCCCceEEEccccCCccc-----cCCC-cccCCccccceeeecccccCCCCCCccccCCCceEEeeeccc
Q 003330 583 PPFIENMEKLRALIVINYSTSNAA-----LGNF-SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 583 p~~~~~l~~Lr~L~l~~~~~~~~~-----~~~~-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 652 (829)
+.++.++++|+.|.+.+....... ...+ ..+..+|+|+.|++++|.-..++. + .+++|++|+|..|.+
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBC
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCC
Confidence 344667788888887553221100 0011 223445666666666653123333 2 255666666665543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.4e-07 Score=100.94 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=46.4
Q ss_pred ccccCCccccCcCCCcEEEecc-ccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCc
Q 003330 680 DLMKLPPSICGLQSLKNLSVTN-CHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP 757 (829)
Q Consensus 680 ~~~~lp~~i~~l~~L~~L~l~~-~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 757 (829)
.+..+|. +..+++|+.|+|++ |. +..+| ..|++|++|+.|+|++|......|..|..+++|++|+|++| .+..+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 3444555 55555566666654 33 33333 44555566666666554433333344555556666666553 334444
Q ss_pred cccCCCccccEeeccccc
Q 003330 758 QGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 758 ~~l~~l~~L~~L~l~~~~ 775 (829)
..+....+|+.|+|.+|+
T Consensus 97 ~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp STTTCSCCCCEEECCSSC
T ss_pred HHHcccCCceEEEeeCCC
Confidence 432222225566665555
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=1.2e-06 Score=95.06 Aligned_cols=195 Identities=12% Similarity=0.139 Sum_probs=91.0
Q ss_pred hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeecccccccccccccc
Q 003330 584 PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDL 663 (829)
Q Consensus 584 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 663 (829)
.+|.++ +|+.+.+.+. .... ....|.+|++|+.+++++|.++.++.......+|+.+.+..+ +. ......
T Consensus 152 ~aF~~~-~L~~i~lp~~-l~~I---~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~----~I~~~a 221 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPST-LEQL---KEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK----EIGSQA 221 (401)
T ss_dssp TTTTTC-CCCEEECCTT-CCEE---CSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC----EECTTT
T ss_pred HhcCCC-CceEEEeCCC-ccEe---hHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hh----eehhhH
Confidence 345553 5666666431 1111 112456667777777777777766666444566666666532 11 111122
Q ss_pred CCccccccccccccccccccCCc-cccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcC-----Ccccccc
Q 003330 664 PKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHL-----RTLPARI 736 (829)
Q Consensus 664 ~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l-----~~lp~~~ 736 (829)
+..+++|+.+++..+ +..++. .|.+ .+|+.+.+.++ +..++ ..|.++++|+.+.+.++... ..-+..|
T Consensus 222 F~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 344566666666542 333332 2333 45555555321 33332 34555555555555543221 1112234
Q ss_pred cCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeeccccccCccCC-cccccccccCceeccch
Q 003330 737 CELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 798 (829)
Q Consensus 737 ~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~ 798 (829)
..+++|+.+.|.+ .+..++. .|.++++|+.+.|..+ +..++ ..+..+ +|+.+.+.++
T Consensus 297 ~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 297 EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 4555555555542 2333332 2445555555555433 22222 234444 5555554443
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=3.5e-08 Score=105.15 Aligned_cols=14 Identities=7% Similarity=0.413 Sum_probs=8.9
Q ss_pred CCccccceeeeccc
Q 003330 614 SNLTNLRSLWLEKV 627 (829)
Q Consensus 614 ~~l~~L~~L~l~~~ 627 (829)
.++++|+.|.+.++
T Consensus 136 ~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 136 EKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHTTCSEEEECCC
T ss_pred hhcchhhheeecCc
Confidence 35667777776554
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=1.5e-06 Score=93.83 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=107.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++.+.+.+..+...+.+.|+|++|+||||+|+.+++.......+.. ...... .. ...+...-.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~----~~~~~~---~~-~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----TPCGVC---DN-CREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS----SCCSSS---HH-HHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC----CCCccc---HH-HHHHhccCC
Confidence 3579999999999999876555678899999999999999999853221111100 000000 00 001110000
Q ss_pred CCC---CCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEEeecccc-c----
Q 003330 263 GCD---SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSRFKFS-T---- 323 (829)
Q Consensus 263 ~~~---~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtR~~~~-~---- 323 (829)
... ........+......... .+++.++|+||++.. +.++.+.. ..+ +..+|++|..... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 000 000001111222222221 356789999999843 34444433 333 5566666654432 1
Q ss_pred cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 003330 324 VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (829)
Q Consensus 324 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 380 (829)
.....+++.+++.++..+++...+-.... ...++....+++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 33467899999999999999876532211 1234567889999999998776554
No 165
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.53 E-value=9.9e-07 Score=91.13 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=103.0
Q ss_pred ccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhcccccc------ccCCeEEEEEeCCCCCHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTS------YFNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~wv~v~~~~~~~~l 253 (829)
..+.||+.+.+++...|.. .+....+.|+|++|.|||++|+.|++.-.-.. .| .++.++.....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~--~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF--DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE--EEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce--EEEEEeccccCCHHHH
Confidence 3468999999999988854 36778889999999999999999996432111 23 2346666667788889
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHHhh---cCCcEEEEEcCCCCh---HhHHHhhh--cCCCceEE--EEeecc-cc
Q 003330 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVWSL---AVLEQLIF--RVPGCKTL--VVSRFK-FS 322 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~LlVlDdv~~~---~~~~~l~~--~~~gs~ii--vTtR~~-~~ 322 (829)
+..|+.++.+.... .....+.+....... .+++++++||+++.. +.+-.+.. ..+.++++ .++... ..
T Consensus 98 ~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 98 YEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999999654321 112223333333332 567899999999864 22222221 23444433 233322 11
Q ss_pred c----------cccceEEccCCCHHHHHHHHHHhh
Q 003330 323 T----------VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 323 ~----------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
. .....+.+++.+.+|-.+++...+
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1 112568999999999999988776
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=1.5e-06 Score=94.20 Aligned_cols=212 Identities=8% Similarity=0.082 Sum_probs=143.6
Q ss_pred ceEEEEEeccCCCcccc-ChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC-ccccCCCc
Q 003330 566 KAEVLILNFSSTEEYFL-PPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQ 643 (829)
Q Consensus 566 ~l~~l~L~~~~~~~~~l-p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 643 (829)
.|+.+.+. .. ...+ +.+|.+|++|+.+.+.++......... |. +.+|+.+.+..+ ++.++.. |..+.+|+
T Consensus 158 ~L~~i~lp--~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a---F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 158 TVQEIVFP--ST-LEQLKEDIFYYCYNLKKADLSKTKITKLPAST---FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCEEECC--TT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTT---TT-TCCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CceEEEeC--CC-ccEehHHHhhCcccCCeeecCCCcceEechhh---Ee-ecccCEEEeCCc-hheehhhHhhCCCCCC
Confidence 45555553 22 3344 367999999999999876654443333 33 478999999854 7777665 77899999
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccC-CccccCcCCCcEEEecccccc----ccc-hhhccCCCC
Q 003330 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKL-PPSICGLQSLKNLSVTNCHSL----QEL-PADIGKMKS 717 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~----~~l-p~~l~~l~~ 717 (829)
.+.+..+ +..... ..+.. .+|+.+.+.++ +..+ +..|.++++|+.+++.++... ..+ +..|.++++
T Consensus 230 ~l~l~~~-l~~I~~----~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 230 TIEIPEN-VSTIGQ----EAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CEECCTT-CCEECT----TTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred EEecCCC-ccCccc----ccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 9999753 211111 12233 67899988553 4555 457889999999999876432 123 367889999
Q ss_pred CCEEecccCCcCCccc-ccccCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeeccccccCccCCcccccc-cccCcee
Q 003330 718 LQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKSVNSL-KSLRQVI 794 (829)
Q Consensus 718 L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~l~~l-~~L~~L~ 794 (829)
|+.+.+.+ .+..++ ..|..+++|+.+.|..+ +..++. .|.++ +|+.+++.+|....-.+..+..+ .++..|.
T Consensus 302 L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 302 LARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp CCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred CCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 99999984 355554 45778899999999653 555543 57888 99999999987433333445555 3677777
Q ss_pred ccch
Q 003330 795 CEED 798 (829)
Q Consensus 795 ~~~~ 798 (829)
+..+
T Consensus 377 vp~~ 380 (401)
T 4fdw_A 377 VPAE 380 (401)
T ss_dssp ECGG
T ss_pred eCHH
Confidence 7655
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.49 E-value=4.1e-06 Score=89.02 Aligned_cols=243 Identities=16% Similarity=0.143 Sum_probs=139.8
Q ss_pred cccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003330 182 NLMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
...++|++..++++..++.. ......|.|+|++|+|||++|+.+++. ....| +.++.+.......+.. .
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~----~~~~~~~~~~~~~~~~-~ 100 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI----KTTAAPMIEKSGDLAA-I 100 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE----EEEEGGGCCSHHHHHH-H
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe----EEecchhccchhHHHH-H
Confidence 34679999999998888863 245567899999999999999999853 22222 2333332222222111 1
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---c-------------------CCCceE
Q 003330 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-------------------VPGCKT 313 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~-------------------~~gs~i 313 (829)
+ .. ..+..+|+||+++.. +....+.. . .|+..+
T Consensus 101 ~----------------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 101 L----------------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp H----------------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred H----------------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1 11 245678999999853 22222221 1 112355
Q ss_pred EEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhc---
Q 003330 314 LVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR--- 384 (829)
Q Consensus 314 ivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~--- 384 (829)
|.+|...... .....+++++++.++...++...+-... ....++....+++.+.|.|-.+..+...+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN---KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5555443221 2235799999999999999987764322 123356788899999999865554433221
Q ss_pred ---CC---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCC
Q 003330 385 ---EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDL 458 (829)
Q Consensus 385 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~ 458 (829)
+. +......++.. +..+...++...+..+..++-. .+..+....+... -++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~----lg~ 291 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA----LSE 291 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH----TTC
T ss_pred HhhcCCccCHHHHHHHHHH------------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH----hCC
Confidence 11 12222222222 2233344555556666655555 5555555554432 356
Q ss_pred CHHHHHHHHH-HHhhcchhhhhh
Q 003330 459 DEEEAFAILV-ELSDRNLLKIVK 480 (829)
Q Consensus 459 ~~~~~~~~l~-~L~~~sli~~~~ 480 (829)
+......+++ .|++.+++....
T Consensus 292 ~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 292 DENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp CHHHHHHTTHHHHHHTTSEEEET
T ss_pred CHHHHHHHHhHHHHHcCceecCC
Confidence 6666666666 677888876544
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=3.8e-07 Score=97.48 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=80.3
Q ss_pred EEEeccccccccchhhccCCCCCCEEecccCCcCCccc-ccccCCCCCCEEeccCCcCCCCC-ccccCCCccccEeeccc
Q 003330 696 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCL-PQGIGNLIRLEKIDMRE 773 (829)
Q Consensus 696 ~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~ 773 (829)
.++.++++.+..+|. +..+++|+.|+|++++.+..+| ..|..+++|+.|+|++|. +..+ |..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 467777646888998 9999999999999745566666 579999999999999975 5555 45689999999999999
Q ss_pred cccCccCCcccccccccCceeccchh
Q 003330 774 CSQIWSLPKSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 774 ~~~~~~lp~~l~~l~~L~~L~~~~~~ 799 (829)
|. +..+|..+.....|+.|++.+|.
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCC
Confidence 99 66777655444449999987764
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.42 E-value=2.5e-06 Score=89.78 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=105.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++.+.+++..+ ....+.++|++|+||||+|+.+++.- ....+...++.++.+.......+.. .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 88 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRH-K----- 88 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTSTTCTTTSSH-H-----
T ss_pred HHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCccccChHHHHH-H-----
Confidence 45789999988888888654 33348999999999999999998531 1122221222344332211111000 0
Q ss_pred CCCCCCCCCCcchhhHHHHh--h-cCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEEEEeeccccc-----cccce
Q 003330 263 GCDSMEPNYVIPHWNLQIQS--K-LGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVSRFKFST-----VLNDT 328 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTtR~~~~~-----~~~~~ 328 (829)
....... . .+++.++|+|+++.. +..+.+... . ++.++|+||...... .....
T Consensus 89 -------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 89 -------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp -------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred -------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0000000 1 256889999999853 334444432 2 356777777654421 33458
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+++.+++.++..+++...+..... ...++....+++.++|.+..+...
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999877643322 223457788999999998865443
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.9e-06 Score=96.89 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred ccccccchhhHHHHHHhhcC----------------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003330 183 LMGIGMALGKNKVKEMVIGR----------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~----------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
..++|++..++++.+++... ...+.+.|+|++|+||||+|+.+++. . ...++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l----~~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L----GYDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T----TCEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c----CCCEEEEeCCC
Confidence 45799999999999998641 13478999999999999999999953 2 22344555555
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH--HhhcCCcEEEEEcCCCCh--------HhHHHhhhcCCCceEEEE
Q 003330 247 SPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQI--QSKLGSRCLVVLDDVWSL--------AVLEQLIFRVPGCKTLVV 316 (829)
Q Consensus 247 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~LlVlDdv~~~--------~~~~~l~~~~~gs~iivT 316 (829)
......+ ...+......... ...+.... ....+++.+||+|+++.. ..+..+... .+..||++
T Consensus 113 ~~~~~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli 185 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNMSV-----VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILI 185 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBCCS-----TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEE
T ss_pred cchHHHH-HHHHHHHhccccH-----HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEE
Confidence 4443322 2222222111100 00000000 011467899999999743 222223222 24445655
Q ss_pred eecccc---c---cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHH
Q 003330 317 SRFKFS---T---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIGA 381 (829)
Q Consensus 317 tR~~~~---~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~ 381 (829)
+..... . .....+++++++.++..+.+...+...... ..++....|++.++|. +-++..+..
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~---i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK---LDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---CCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 544321 1 234578999999999999988776433221 1223677899999994 555555543
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=9.7e-06 Score=86.67 Aligned_cols=186 Identities=12% Similarity=0.132 Sum_probs=108.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|++..++.+..++.... ...+.++|++|+||||+|+.+++.......+...+..++.+.......+...+ ....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV-KNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH-HHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH-HHHh
Confidence 457999999999998886542 23389999999999999999995321111233333344444433333332222 1111
Q ss_pred CCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh--HhHHHhhh----cCCCceEEEEeeccccc-----cccceEE
Q 003330 263 GCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKFST-----VLNDTYE 330 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtR~~~~~-----~~~~~~~ 330 (829)
...... ... ...... .+++-+|++|+++.. +....+.. ..+..++|++|...... .....++
T Consensus 115 ~~~~~~---~~~---~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLTVSK---PSK---HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSCCCC---CCT---THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhcccc---cch---hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 110000 000 000111 245679999998743 33333332 23456777776544321 2234788
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 331 l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+.+++.++....+...+..... ...++....|++.++|.|..+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999887643221 123457889999999998865443
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=2.9e-06 Score=81.73 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=38.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++||+..++++.+.+.. ...+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999874 44567889999999999999999853
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=2.7e-05 Score=80.33 Aligned_cols=171 Identities=16% Similarity=0.089 Sum_probs=97.3
Q ss_pred cccccccchhhHHHHHHhhcC------------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCC
Q 003330 182 NLMGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (829)
...++|.+..++++.+.+... ...+.+.|+|++|+|||+||+.+++. .. ..++.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~----~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TN----ATFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TT----CEEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hC----CCEEEEehHHHHH
Confidence 345789999999988877431 45667999999999999999999953 22 2222333321100
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh----------------HhHHHhhh------
Q 003330 250 VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL----------------AVLEQLIF------ 306 (829)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~----------------~~~~~l~~------ 306 (829)
.. .............. ...++.+|+|||++.. ..+..+..
T Consensus 90 --------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 --------------KF---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp --------------CS---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred --------------hc---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 00 00000111111111 2456789999999743 11222221
Q ss_pred cCCCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHH
Q 003330 307 RVPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALK 377 (829)
Q Consensus 307 ~~~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 377 (829)
...+..||.||...... .....+.++..+.++..+++...+......... ....+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHH
Confidence 11245666677544321 112468899999999999998886443221111 24567777776 454554
Q ss_pred HH
Q 003330 378 VI 379 (829)
Q Consensus 378 ~~ 379 (829)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.17 E-value=1e-05 Score=81.08 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=92.6
Q ss_pred hhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCC
Q 003330 191 GKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPN 270 (829)
Q Consensus 191 ~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~ 270 (829)
..+.+..+.. ....+.+.|+|++|+||||+|+.+++. ..... ..+.|++.+..... +
T Consensus 39 ~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~-~~~~~~~~~~~~~~----------~--------- 95 (242)
T 3bos_A 39 LIGALKSAAS-GDGVQAIYLWGPVKSGRTHLIHAACAR--ANELE-RRSFYIPLGIHASI----------S--------- 95 (242)
T ss_dssp HHHHHHHHHH-TCSCSEEEEECSTTSSHHHHHHHHHHH--HHHTT-CCEEEEEGGGGGGS----------C---------
T ss_pred HHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcC-CeEEEEEHHHHHHH----------H---------
Confidence 3444444443 235678999999999999999999953 22221 23456665431100 0
Q ss_pred CCcchhhHHHHhhcCCcEEEEEcCCCChH--h--HHHhhhc----C-CCc-eEEEEeeccccc------------cccce
Q 003330 271 YVIPHWNLQIQSKLGSRCLVVLDDVWSLA--V--LEQLIFR----V-PGC-KTLVVSRFKFST------------VLNDT 328 (829)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~--~~~l~~~----~-~gs-~iivTtR~~~~~------------~~~~~ 328 (829)
......+ .++.+||+||++... . .+.+... . .+. ++|+||+..... .....
T Consensus 96 ------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~ 168 (242)
T 3bos_A 96 ------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLT 168 (242)
T ss_dssp ------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEE
T ss_pred ------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCce
Confidence 0000111 345689999997431 1 2222221 1 133 488887754321 11268
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+++++++.++..+++...+..... ...++....+++.++|.+-.+..+
T Consensus 169 i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999999887642221 223457788999999988766544
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=2.2e-05 Score=83.91 Aligned_cols=186 Identities=13% Similarity=0.029 Sum_probs=100.9
Q ss_pred ccccccchhhHHHHHHh-hcCCCceEEEEEcCCCCcHHHHHHHHhhcc-ccc-c--ccC-------------------Ce
Q 003330 183 LMGIGMALGKNKVKEMV-IGRDDLSVLGICGIGGSGKTTLALEVCRDH-QVT-S--YFN-------------------NR 238 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~-~--~F~-------------------~~ 238 (829)
..++|.+...+.+.+++ ..+.... +.|+|++|+||||+|+.++..- ... + .++ ..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 45689988888888887 4333344 9999999999999999988521 000 0 000 00
Q ss_pred EEEEEeCCCC-CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhh----hcCCCc
Q 003330 239 ILFLTVSQSP-NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI----FRVPGC 311 (829)
Q Consensus 239 ~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~----~~~~gs 311 (829)
.+.+..+... ......++++..+........ .. .+..+.+++-++|+|+++.. +..+.+. ...++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~-----~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQVDF--QD-----SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccccc--cc-----cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 1111111100 000012222222211110000 00 00001246779999999864 2222232 233467
Q ss_pred eEEEEeeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchh-HHHHHHHHHHcCCchhHHHHH
Q 003330 312 KTLVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSAN-ENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 312 ~iivTtR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~-~~~~~~i~~~~~g~PLai~~~ 379 (829)
.+|++|...... .....+++++++.++..+.+...+-.... ... ++....|++.++|.+-.+..+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 888887665422 33467899999999999999877633221 112 347788999999988765444
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=2e-06 Score=80.20 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcc-cccccCC----CCCCEEeccCCcCCCCC-c
Q 003330 684 LPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTL-PARICEL----VCLKYLNISQCVSLSCL-P 757 (829)
Q Consensus 684 lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~l----~~L~~L~l~~~~~l~~l-p 757 (829)
+|.....-.+|+.||+++|.....--..+..+++|++|+|++|..++.- -..+..+ ++|++|+|++|..++.- -
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 4443333346777777777633332345667778888888887755432 1234443 36888888888766531 1
Q ss_pred cccCCCccccEeecccccc
Q 003330 758 QGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 758 ~~l~~l~~L~~L~l~~~~~ 776 (829)
..+..+++|++|+|++|+.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHGGGCTTCCEEEEESCTT
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 2356678888888888763
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.11 E-value=4.8e-05 Score=80.08 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=101.0
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|.+..++.+.+++......+++.+.|++|+|||++|+.+++. .. ..++.++.+.. ....+. ..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~--l~----~~~~~i~~~~~-~~~~i~-~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD--VN----ADMMFVNGSDC-KIDFVR-GPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH--TT----EEEEEEETTTC-CHHHHH-THHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH--hC----CCEEEEccccc-CHHHHH-HHHHHHH
Confidence 4578999999999999986666678889999999999999999953 22 23345555442 233322 2222211
Q ss_pred CCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH---hHHHhhh---c-CCCceEEEEeeccccc-----cccceEE
Q 003330 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA---VLEQLIF---R-VPGCKTLVVSRFKFST-----VLNDTYE 330 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~---~~~~l~~---~-~~gs~iivTtR~~~~~-----~~~~~~~ 330 (829)
.... ..+++.+|++||++... ..+.+.. . .++.++|+||...... .....++
T Consensus 98 ~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 98 SAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred hhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 0000 12468899999999653 3344433 1 2356777777665421 2335789
Q ss_pred ccCCCHHHHHHHH-------HHhhcCCCCCCCchhH-HHHHHHHHHcCCchhHH
Q 003330 331 VELLREDESLSLF-------CYSAFGQKTIPPSANE-NLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 331 l~~L~~~e~~~Lf-------~~~a~~~~~~~~~~~~-~~~~~i~~~~~g~PLai 376 (829)
+++++.++-.+++ ...+..... ...+ +....+++.++|.+-.+
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEGI---AIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTC---CBSCHHHHHHHHHHTCSCTTHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHhCCCCHHHH
Confidence 9999988844332 222211111 1112 57778888888876643
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.11 E-value=2.8e-05 Score=79.58 Aligned_cols=186 Identities=19% Similarity=0.162 Sum_probs=97.6
Q ss_pred ccccchhhHHHHH-------Hhh--cCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHH
Q 003330 185 GIGMALGKNKVKE-------MVI--GRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 185 ~vgr~~~~~~l~~-------~L~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (829)
++|.....+++.. .+. .....+.+.|+|++|+|||++|+.+++. ... ..+.++.+..
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~----~~~~i~~~~~-------- 100 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNF----PFIKICSPDK-------- 100 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTC----SEEEEECGGG--------
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCC----CEEEEeCHHH--------
Confidence 4566655555554 232 1345678999999999999999999963 221 1222322210
Q ss_pred HHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh------------HhHHHhh---hcC--CCc--eEEE
Q 003330 256 KVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL------------AVLEQLI---FRV--PGC--KTLV 315 (829)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~------------~~~~~l~---~~~--~gs--~iiv 315 (829)
+.+.. .............. ...+..+|+|||++.. ..++.+. ... ++. .||.
T Consensus 101 -----~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -----MIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -----CTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -----hcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00000 00000011111111 1356889999998643 1222222 221 233 3555
Q ss_pred Eeecccc------c-cccceEEccCCCH-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC------chhHHHHHHH
Q 003330 316 VSRFKFS------T-VLNDTYEVELLRE-DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG------LPLALKVIGA 381 (829)
Q Consensus 316 TtR~~~~------~-~~~~~~~l~~L~~-~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g------~PLai~~~~~ 381 (829)
||..... . .....+++++++. ++...++.... ...++....+++.+.| +.-++.++-.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--------~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--------NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--------CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--------CCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 5655421 1 2245688888888 66666655431 1124467788888887 4445555444
Q ss_pred HhcCCChhHHHHHHHHhcc
Q 003330 382 SLREQPEMYWTSAKKRLSK 400 (829)
Q Consensus 382 ~l~~~~~~~w~~~l~~l~~ 400 (829)
.........+..+++.+..
T Consensus 245 a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHH
T ss_pred HhhhchHHHHHHHHHHHHH
Confidence 4333445667777766654
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.10 E-value=6e-05 Score=80.32 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=99.6
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++++.+.+.. ....+.|.|+|++|+|||+||+.+++. . ...++.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~----~~~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--S----GATFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--T----TCEEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--c----CCeEEEEehHHhhc--
Confidence 4578999999998887742 235678999999999999999999953 2 22233454432111
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------HhHHHhhh---cC-----C
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLIF---RV-----P 309 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~~~~~l~~---~~-----~ 309 (829)
.. .............. ...++.+|+||+++.. ..+..+.. +. .
T Consensus 156 ------------~~---~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 ------------KW---VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp ------------SS---TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred ------------cc---cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 00000011111111 1356789999999532 11222221 11 1
Q ss_pred CceEEEEeeccc-cc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHH
Q 003330 310 GCKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGA 381 (829)
Q Consensus 310 gs~iivTtR~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 381 (829)
+..||.||.... +. .....+.++..+.++..+++...+-.... ...++....+++.+.| .+-.+..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334444554432 21 22346788999999999998877643221 1224567888999988 5666666554
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.09 E-value=7.7e-05 Score=78.71 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=96.5
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc--------------------ccCCeEEEEEeC---CCC
Q 003330 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS--------------------YFNNRILFLTVS---QSP 248 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~wv~v~---~~~ 248 (829)
.+.+.+.+..+.-.+.+.++|+.|+||||+|+.+.+.-.-.. +++ +.++... ...
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d--~~~~~~~~~~~~~ 88 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD--YYTLAPEKGKNTL 88 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT--EEEECCCTTCSSB
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC--EEEEeccccCCCC
Confidence 345666665555567899999999999999999985311110 122 2233322 122
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-CCceEEEEeeccc-
Q 003330 249 NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSRFKF- 321 (829)
Q Consensus 249 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtR~~~- 321 (829)
.+..+ +++...+.... ..+++-++|+|+++.. +..+.+.. .. ++..+|++|....
T Consensus 89 ~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 89 GVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp CHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 33222 23333321110 1256778999999853 33444433 22 3567676666553
Q ss_pred cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 322 ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 322 ~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+. .....+++++++.++..+.+.... ...++.+..+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 344689999999999999988775 112346688999999999766543
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.06 E-value=0.00015 Score=75.91 Aligned_cols=174 Identities=17% Similarity=0.157 Sum_probs=97.6
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++.+.+.+.. ....+.|.++|++|+|||+||+++++. .. ...++.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~---~~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN---NSTFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT---SCEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC---CCcEEEEEhHHHHh--
Confidence 4567888888888776631 123478999999999999999999963 21 11222333321110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------HhHHHhhh---c----CCC
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLIF---R----VPG 310 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~~~~~l~~---~----~~g 310 (829)
.. .............. ...++.+|++|+++.. .....+.. + ..+
T Consensus 85 ------------~~---~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ------------KW---LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ------------SS---CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ------------hh---hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 00111111222221 1467889999999854 11122221 1 123
Q ss_pred ceEEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHH
Q 003330 311 CKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIGA 381 (829)
Q Consensus 311 s~iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~ 381 (829)
..||.||...... .....+.++..+.++-.+++..+.-.... ...+.....|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3444455433211 23356888999999999999887633221 11234678889999886 545665544
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.04 E-value=0.0001 Score=77.31 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=98.6
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++.+.+++.. ....+.|.++|++|+|||+||+++++. ... .++.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~----~~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANS----TFFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTC----EEEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCC----CEEEEchH------
Confidence 4578999888888887721 123567999999999999999999953 222 22233322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCChH-------------hHHHhhh-------cCCC
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA-------------VLEQLIF-------RVPG 310 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~~-------------~~~~l~~-------~~~g 310 (829)
++ ..... ............. ...++.+|+||+++... ....+.. ...+
T Consensus 86 ~l----~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 DL----VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp HH----HTTTG-------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred HH----hhccc-------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 10000 0001111111111 14567899999998431 1222221 1224
Q ss_pred ceEEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHH
Q 003330 311 CKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGA 381 (829)
Q Consensus 311 s~iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 381 (829)
..||.||...... .....+.++..+.++-.+++..++.+... ...+.....+++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455455543321 22356788999999999999988743221 1123467788888887 4555555443
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.01 E-value=6.5e-05 Score=82.14 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=99.1
Q ss_pred ccccccchhh---HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003330 183 LMGIGMALGK---NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 183 ~~~vgr~~~~---~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
..++|.+..+ ..+...+.. .....+.++|++|+||||+|+.+++. ....| .-++.. .....++.. ++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~-~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f----~~l~a~-~~~~~~ir~-~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA-GHLHSMILWGPPGTGKTTLAEVIARY--ANADV----ERISAV-TSGVKEIRE-AIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH-TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE----EEEETT-TCCHHHHHH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc-CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe----EEEEec-cCCHHHHHH-HHH
Confidence 3467877666 556666653 45578999999999999999999953 32222 122222 223333221 111
Q ss_pred hhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhcC-CC-ceEEE-Eeeccccc------cccce
Q 003330 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRV-PG-CKTLV-VSRFKFST------VLNDT 328 (829)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~~-~g-s~iiv-TtR~~~~~------~~~~~ 328 (829)
.. .. ....+++.+|+||+++.. .+.+.+.... .| ..+|. ||.+.... ....+
T Consensus 97 ~a---------------~~--~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 97 RA---------------RQ--NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HH---------------HH--HHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HH---------------HH--hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeE
Confidence 11 00 011467889999999854 3334443322 13 33333 44443211 33458
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCC----CCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 329 YEVELLREDESLSLFCYSAFGQKT----IPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~----~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+.+++++.++...++...+-.... ......++....+++.++|.+-.+..+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 899999999999999887643211 111234567888999999988755443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.99 E-value=4.5e-05 Score=83.58 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccccccc-CCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...+.|+|++|+||||||+.+++ .....+ ...+++++.. .+..++...+.... ........
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~----------~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK----------LNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC----------HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc----------HHHHHHHh
Confidence 67899999999999999999995 343333 2334455433 23344444432210 11122222
Q ss_pred cCCcEEEEEcCCCChH----hHHHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003330 284 LGSRCLVVLDDVWSLA----VLEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~~----~~~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
..+..+|+|||++... ..+.+.. ...|..||+||...... .....+.+++++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 3367799999997432 2222322 23477889988764321 1125788999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003330 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
+...+...... ..++....|++.++|.+-.+..
T Consensus 272 L~~~~~~~~~~---i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHGE---LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTCC---CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHH
Confidence 98876422111 1123577888888888765543
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=0.00016 Score=76.56 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=99.0
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|.+..++.+...+..+ ....+.++|++|+||||+|+.++..-. ...+...+.-++.+.......+.. ....+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVRN-QIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHHHT-HHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHHHH-HHHHHH
Confidence 34678777777777777643 333389999999999999999985311 112222222334333333333322 222211
Q ss_pred CCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhh---hcC-CCceEEEEeeccccc-----cccceEEc
Q 003330 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---FRV-PGCKTLVVSRFKFST-----VLNDTYEV 331 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~---~~~-~gs~iivTtR~~~~~-----~~~~~~~l 331 (829)
.... ...+.+-++|+|+++.. +..+.+. ... +..++|++|...... .....+++
T Consensus 102 ~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 102 STRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred hhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 0000 01234678999999742 3333333 223 356666666544311 23357889
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003330 332 ELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 332 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
.+++.++..+.+...+-.... ...++....+++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 999999988888776532221 123456788899999987643
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=0.00026 Score=73.40 Aligned_cols=173 Identities=17% Similarity=0.128 Sum_probs=96.8
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++.+.+++.. ....+.+.|+|++|+||||+|+.+++. .. ...+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~----~~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CS----ATFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TT----CEEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hC----CCeEEeeHHHHhh--
Confidence 4578999888888887632 124578999999999999999999953 22 2222344332110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------HhHHHhh---hcC------
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLI---FRV------ 308 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~~~~~l~---~~~------ 308 (829)
.. .............. ...++.+|++|+++.. .....+. ...
T Consensus 93 ------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 ------------KY---VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp ------------SS---CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred ------------cc---cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 00001111111111 1456789999999643 1111121 112
Q ss_pred CCceEEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHH
Q 003330 309 PGCKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGA 381 (829)
Q Consensus 309 ~gs~iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 381 (829)
.+..||.||...... .....+.++..+.++...++...+-.... ...++....+++.+.|.+- ++..+..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 123455555543211 22356778888888888888776533221 1223467788889988775 5555443
No 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.95 E-value=0.00026 Score=71.75 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=92.4
Q ss_pred cccccchhhHHHHHHhh---cC--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHH
Q 003330 184 MGIGMALGKNKVKEMVI---GR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~---~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (829)
.++|.+..++.+.+++. .. ...+.+.|+|++|+|||++|+.+++. .. ...+.+..+...+.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~----~~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQ----VPFLAMAGAEFVEV-- 78 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HT----CCEEEEETTTTSSS--
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hC----CCEEEechHHHHhh--
Confidence 46788877777766542 11 23466889999999999999999953 22 22234444322110
Q ss_pred HHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-----------------HhHHHhhh---c--C-
Q 003330 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-----------------AVLEQLIF---R--V- 308 (829)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-----------------~~~~~l~~---~--~- 308 (829)
. .............. ....+.+|+||+++.. ..+..+.. . .
T Consensus 79 ------------~---~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 ------------I---GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ------------S---TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ------------c---cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00000111111111 1345789999999854 11222221 1 1
Q ss_pred CCceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 003330 309 PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVI 379 (829)
Q Consensus 309 ~gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 379 (829)
.+..||.||..... + .....+.++..+.++..+++...+..... ..........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23455555544331 1 12256789999999999999887643221 11122235778888888654 45444
Q ss_pred H
Q 003330 380 G 380 (829)
Q Consensus 380 ~ 380 (829)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=5.2e-06 Score=77.41 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=31.6
Q ss_pred cCcCCCcEEEeccccccccch-hhccCC----CCCCEEecccCCcCCc-ccccccCCCCCCEEeccCCcCCC
Q 003330 689 CGLQSLKNLSVTNCHSLQELP-ADIGKM----KSLQILRLYACPHLRT-LPARICELVCLKYLNISQCVSLS 754 (829)
Q Consensus 689 ~~l~~L~~L~l~~~~~~~~lp-~~l~~l----~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~ 754 (829)
.++++|+.|+|++|..++.-- ..+..+ ++|++|+|++|..++. --..+..+++|++|++++|+.++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 445555555555554433311 223332 2456666666554432 11224455666666666665554
No 189
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.95 E-value=4.5e-05 Score=81.99 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=99.1
Q ss_pred ccccccchhhHHH---HHHhhcCC-CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe----CCCCCHHHHH
Q 003330 183 LMGIGMALGKNKV---KEMVIGRD-DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV----SQSPNVEQLR 254 (829)
Q Consensus 183 ~~~vgr~~~~~~l---~~~L~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v----~~~~~~~~l~ 254 (829)
..++|++..++.+ .+.+.... ..+.+.|+|++|+|||++|+.+++. .....+ .+.+.. +.........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~--~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP--FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC--EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC--cccccchhhhhcccchhHHH
Confidence 4578998887664 33443332 3468999999999999999999953 332221 112221 1122333333
Q ss_pred HHHHHhhcCCC----------------------------CCCCCCCcchhhHHH----Hh--hcCC----cEEEEEcCCC
Q 003330 255 AKVWGFVSGCD----------------------------SMEPNYVIPHWNLQI----QS--KLGS----RCLVVLDDVW 296 (829)
Q Consensus 255 ~~i~~~l~~~~----------------------------~~~~~~~~~~~~~~~----~~--~~~~----~~LlVlDdv~ 296 (829)
...+....+.. ..............+ .. ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33332211100 000000011111111 11 1233 3599999998
Q ss_pred Ch--HhHHHhhh---cCCCceEEEEeec------------c-cc--c--cccceEEccCCCHHHHHHHHHHhhcCCCCCC
Q 003330 297 SL--AVLEQLIF---RVPGCKTLVVSRF------------K-FS--T--VLNDTYEVELLREDESLSLFCYSAFGQKTIP 354 (829)
Q Consensus 297 ~~--~~~~~l~~---~~~gs~iivTtR~------------~-~~--~--~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~ 354 (829)
.. +....+.. ..+...++++|.. . .+ + .....+.+++++.++..+++...+-....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 54 33333333 2333344444431 1 11 1 22345899999999999999877643221
Q ss_pred CchhHHHHHHHHHHcC-CchhHHHHH
Q 003330 355 PSANENLVKQIVKKCK-GLPLALKVI 379 (829)
Q Consensus 355 ~~~~~~~~~~i~~~~~-g~PLai~~~ 379 (829)
...++....+++.+. |.|-.+..+
T Consensus 278 -~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 -EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 233457888888887 777655433
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.90 E-value=0.00013 Score=76.05 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=79.7
Q ss_pred ccccchhhHHHHHHhhc--------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003330 185 GIGMALGKNKVKEMVIG--------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~--------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
++|.+..++.+.+++.. ......+.|+|++|+|||++|+.+++............ ++.+...
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~--- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH-LVSVTRD--- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC-EEEECGG---
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc-EEEEcHH---
Confidence 57777777777665431 23455799999999999999998885321111111111 3333210
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC-----------hHhHHHhhh----cCCCceEEE
Q 003330 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS-----------LAVLEQLIF----RVPGCKTLV 315 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~-----------~~~~~~l~~----~~~gs~iiv 315 (829)
.+.... ...........+.. .+..+|+||+++. .+....+.. ...+..||.
T Consensus 109 ---------~l~~~~---~g~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY---IGHTAPKTKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS---TTCHHHHHHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc---ccccHHHHHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 110000 00001111111211 1345899999983 233333332 234567777
Q ss_pred Eeeccc--------cc---cccceEEccCCCHHHHHHHHHHhhc
Q 003330 316 VSRFKF--------ST---VLNDTYEVELLREDESLSLFCYSAF 348 (829)
Q Consensus 316 TtR~~~--------~~---~~~~~~~l~~L~~~e~~~Lf~~~a~ 348 (829)
||.... .+ .....+++++++.++-.+++...+-
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 775432 11 2236789999999999999987764
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.86 E-value=0.00019 Score=76.31 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=97.7
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++.+.+.+.. ....+-|.++|++|+|||+||+++++. .. ..++.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~----~~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--AN----STFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HT----CEEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hC----CCEEEeeHH------
Confidence 4578998888888887631 123456889999999999999999963 22 222233322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCChH-------------hHHHhhh---c----CCC
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA-------------VLEQLIF---R----VPG 310 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~~-------------~~~~l~~---~----~~g 310 (829)
++ ..... ............. ...++.+|+||+++... ....+.. . ..+
T Consensus 119 ~l----~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DL----VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HH----hhhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 11100 0011111222221 14578999999998431 1222221 1 123
Q ss_pred ceEEEEeecccc-c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHH
Q 003330 311 CKTLVVSRFKFS-T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGA 381 (829)
Q Consensus 311 s~iivTtR~~~~-~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 381 (829)
..||.||..... . .....+.++..+.++-.+++..+...... ...+.....|++.+.| .+-.|..+..
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445545544321 1 23356789999999999999887643221 1123467788888888 4555555543
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.86 E-value=0.00046 Score=75.65 Aligned_cols=174 Identities=19% Similarity=0.202 Sum_probs=98.4
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++.+.+.+.. ....+.|.++|++|+|||+||+.+++. .. ... ++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~---~~~--~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN---NST--FFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC---SSE--EEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC---CCC--EEEEeHHH---
Confidence 4578888888888877621 134578999999999999999999963 21 111 33333221
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-------------HhHHHhhhc-------CCC
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AVLEQLIFR-------VPG 310 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-------------~~~~~l~~~-------~~g 310 (829)
+. ....+. ............ ..++.+|+||+++.. .....+... ..+
T Consensus 204 -l~----~~~~g~-------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LV----SKWLGE-------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HH----hhhcch-------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11 110000 111122222222 457889999999854 112233221 123
Q ss_pred ceEEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHH
Q 003330 311 CKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGA 381 (829)
Q Consensus 311 s~iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 381 (829)
..||.||...... .....+.++..+.++...+|..++..... ...+.....|++.+.| .+-.|..+..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555443221 22346788888999999999887633221 1123467788888888 4555555543
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.84 E-value=0.00038 Score=75.14 Aligned_cols=174 Identities=17% Similarity=0.109 Sum_probs=97.2
Q ss_pred cccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003330 182 NLMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
...++|.+..++.+.+++.. ....+.|.|+|++|+|||+||+.+++. . ...++.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~----~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--S----NATFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--T----TCEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--h----cCcEEEeeHHHhhcc
Confidence 34679999999998888731 123578999999999999999999853 2 222223333321110
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-------------HhHHHhhh----c---CC
Q 003330 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AVLEQLIF----R---VP 309 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-------------~~~~~l~~----~---~~ 309 (829)
.. .............. ...+.+|+||+++.. .....+.. . .+
T Consensus 188 --~~---------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 188 --YV---------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred --cc---------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00001111111111 345689999999743 11112211 1 12
Q ss_pred -CceEEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHH
Q 003330 310 -GCKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGA 381 (829)
Q Consensus 310 -gs~iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 381 (829)
...||.||...... .....+.++..+.++..+++...+-.... ...++....+++.+.|..- ++..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23444455433211 22246888999999999999887643222 2234467889999888544 6655543
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.82 E-value=0.00021 Score=75.19 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=89.9
Q ss_pred HHHHHHhhcCC-CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCC
Q 003330 193 NKVKEMVIGRD-DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 193 ~~l~~~L~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
..+..++.... ....+.|+|++|+||||||+.+++. .... ...+++++.. .+...+...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~-~~~~~~i~~~------~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKR-GYRVIYSSAD------DFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHT-TCCEEEEEHH------HHHHHHHHHHHHT-------
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHC-CCEEEEEEHH------HHHHHHHHHHHcC-------
Confidence 34444444332 4578999999999999999999963 2111 2234455433 3333333333210
Q ss_pred CcchhhHHHHhhcCCcEEEEEcCCCChH---h-HHHhhh-----cCCCceEEEEeeccccc------------cccceEE
Q 003330 272 VIPHWNLQIQSKLGSRCLVVLDDVWSLA---V-LEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYE 330 (829)
Q Consensus 272 ~~~~~~~~~~~~~~~~~LlVlDdv~~~~---~-~~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~ 330 (829)
.. ....... .+..+|++||++... . .+.+.. ...|..||+||...... .....++
T Consensus 88 ~~---~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 88 TI---NEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp CH---HHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred cH---HHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 01 1111112 236699999997532 1 222221 12467888888654321 1125689
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhH
Q 003330 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (829)
Q Consensus 331 l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 375 (829)
+++ +.++..+++...+..... ...++....+++.+ |.+-.
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 999 999999999887743221 12245677888888 76543
No 195
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.79 E-value=0.0013 Score=69.22 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred cccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003330 184 MGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
.++|.+..++.+...+.. +.....+.++|++|+||||||+.+++. ....| ....-.-.....++. .+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~~~~~l~-~~~- 97 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLVKQGDMA-AIL- 97 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCCSHHHHH-HHH-
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhcCHHHHH-HHH-
Confidence 457776666665555532 234577999999999999999999953 22111 111111111111211 111
Q ss_pred hhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-------------------CCceEE-
Q 003330 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-------------------PGCKTL- 314 (829)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-------------------~gs~ii- 314 (829)
... .++.++++|+++.. ...+.+.. .. +...++
T Consensus 98 ---------------------~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 98 ---------------------TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ---------------------HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ---------------------HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111 23446778887642 22222221 10 111222
Q ss_pred EEeeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003330 315 VVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 315 vTtR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.|++..... .....+.+++.+.++-.+++.+.+-... ....++.+..|++.+.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 244433332 1123578999999999999988763211 1223557899999999999755433
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=0.00044 Score=71.64 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=92.9
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003330 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
..++|.+..++++.+++.. -...+.|.++|++|+|||+||+.+++. .. .. ++.+. .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~----~~--~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQ----AN--FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TT----CE--EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hC----CC--EEEEE----h
Confidence 4578888888888877642 145678999999999999999999953 22 22 22222 2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCChH----------------hHHHhhh---c-C-
Q 003330 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA----------------VLEQLIF---R-V- 308 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~~----------------~~~~l~~---~-~- 308 (829)
.++.... .+.. .......... ....+.+|++|+++... ....+.. + .
T Consensus 83 ~~l~~~~----~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW----FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH----HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh----cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222222 1111 1112222222 24568999999998421 1122221 1 1
Q ss_pred -CCceEEEEeeccc-c--c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhH
Q 003330 309 -PGCKTLVVSRFKF-S--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (829)
Q Consensus 309 -~gs~iivTtR~~~-~--~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 375 (829)
.+..||.||.... + + .....+.++..+.++-.+++....-........ ....++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~----~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc----hHHHHHHHcCCCCHH
Confidence 2445665665442 1 1 123568899999999999987776332211111 123455667666543
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.76 E-value=5e-05 Score=72.50 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=38.0
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++||+.+++++.+.+.. ...+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999998864 44566789999999999999999853
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=3.2e-06 Score=80.98 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=9.8
Q ss_pred hhhhcCCCCceEEEccc
Q 003330 584 PFIENMEKLRALIVINY 600 (829)
Q Consensus 584 ~~~~~l~~Lr~L~l~~~ 600 (829)
..+...++|++|++.+|
T Consensus 30 ~~l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNI 46 (185)
T ss_dssp HHHTTCTTCCEEECTTC
T ss_pred HHHhcCCCCCEEEecCC
Confidence 34555566666666655
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=2.6e-06 Score=81.55 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=72.9
Q ss_pred cCCccccceeeeccc-ccC-----CCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccc----
Q 003330 613 CSNLTNLRSLWLEKV-SIS-----QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM---- 682 (829)
Q Consensus 613 l~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---- 682 (829)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.......+.......++|++|+|++|..-.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445677788888777 665 2444455567788888887776543333333323345678888888775332
Q ss_pred cCCccccCcCCCcEEEe--cccccccc----chhhccCCCCCCEEecccCC
Q 003330 683 KLPPSICGLQSLKNLSV--TNCHSLQE----LPADIGKMKSLQILRLYACP 727 (829)
Q Consensus 683 ~lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~l~~l~~L~~L~l~~~~ 727 (829)
.+...+...++|++|+| ++|..... +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 24556667778888888 66654322 44556667888888888865
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=0.00026 Score=84.62 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=79.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc---ccccc-CCeEEEEEeCCCCCHHHHHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTSYF-NNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++||+.++.++.+.|... ..+.+.++|++|+||||+|+.+++.-. +.... ...+++++.+.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred cccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 45799999999999998743 344578999999999999999995311 11111 22344444321100
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH----------h---HHHhhhcCCCceEEEEeeccc--
Q 003330 259 GFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA----------V---LEQLIFRVPGCKTLVVSRFKF-- 321 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~----------~---~~~l~~~~~gs~iivTtR~~~-- 321 (829)
+.. ........+...+... .+++.+|++|+++... . +..+... .+..+|.+|....
T Consensus 240 ----g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ----GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEYR 312 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHHH
T ss_pred ----cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHHh
Confidence 000 0000111122222222 2468999999998542 1 1222222 2344555444321
Q ss_pred -----cc--cccceEEccCCCHHHHHHHHHHh
Q 003330 322 -----ST--VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 322 -----~~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
.+ .....+.++.++.++..+++...
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 11 22346899999999999998644
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0012 Score=70.01 Aligned_cols=160 Identities=12% Similarity=0.116 Sum_probs=93.7
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP- 248 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~- 248 (829)
...+.|.+..+++|.+.+.- -...+-|.++|++|.|||.||+++++. .... ++.+..+.-.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~----f~~v~~s~l~s 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK----FIRVSGAELVQ 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE----EEEEEGGGGSC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC----ceEEEhHHhhc
Confidence 34567888888888876531 145678999999999999999999953 2222 2344443211
Q ss_pred ----CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH----------------hHHHhhh--
Q 003330 249 ----NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA----------------VLEQLIF-- 306 (829)
Q Consensus 249 ----~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~----------------~~~~l~~-- 306 (829)
.....++.++... ....+++|++|+++... .+..+..
T Consensus 221 k~vGese~~vr~lF~~A---------------------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMA---------------------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp SSTTHHHHHHHHHHHHH---------------------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHH---------------------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 1122222222211 14568999999998420 1222221
Q ss_pred -cCC---CceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003330 307 -RVP---GCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 307 -~~~---gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
++. +..||.||..... | ..+..++++..+.++-.++|+.+.-+....... ....+++.+.|.
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~ 353 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI----NLRKVAEKMNGC 353 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSC
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCC
Confidence 222 3344445544432 1 234688999999999999998776332211111 145677777775
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00024 Score=78.48 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=77.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc------CCeEEEEEeCCCCCHHHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF------NNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..++||+.++.++.+.|... ...-+.++|++|+|||++|+.+++. +...+ ...++.++.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~---------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT---------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------------
T ss_pred CCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc----------
Confidence 35899999999999998753 3445679999999999999999853 21111 12222222220
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCChHhHHHhhhcCC-C-ceEEEEeecccc----c------
Q 003330 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFRVP-G-CKTLVVSRFKFS----T------ 323 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~~~~~~l~~~~~-g-s~iivTtR~~~~----~------ 323 (829)
... ......+...+... ..++.+|++| ...+....+.+... | .++|.+|..... .
T Consensus 247 ---~~~-------g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 ---KYR-------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ---ccc-------chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000 00111122222222 3567889999 33333333444332 3 455555554431 1
Q ss_pred cccceEEccCCCHHHHHHHHHHhh
Q 003330 324 VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 324 ~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.....+.++..+.++..+++...+
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 223468999999999999998765
No 203
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=97.56 E-value=2.9e-05 Score=71.92 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=65.9
Q ss_pred HHHhhcCCchhhhhcHHHHHHHHHHHHHHhhhhccccchhh-hccchhhhHhhhhHHhhhHHH--HHHHHHHhhcccccc
Q 003330 79 CRKVLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGS--ARRLEQRLGAMRIGV 155 (829)
Q Consensus 79 ~~d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 155 (829)
.+..|.++.||+ .|++++++|.+. .+....|++|.+ |+||+++++.++++|.+++.+ .+++++|+.|+....
T Consensus 70 ~S~ny~~S~WCl---~EL~~i~~~~~~--~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va 144 (176)
T 3jrn_A 70 VSENYAASSWCL---DELVTIMDFEKK--GSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFA 144 (176)
T ss_dssp ECTTTTTCHHHH---HHHHHHHHHHHT--TSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ecCCcCCChhHH---HHHHHHHhhhcc--CCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 457889999999 578888888643 345668999999 999999999999999998765 578999999998888
Q ss_pred CCCCcch
Q 003330 156 GGGGWVD 162 (829)
Q Consensus 156 ~~~~~~~ 162 (829)
+.+||..
T Consensus 145 ~~~G~~~ 151 (176)
T 3jrn_A 145 QLSGDCS 151 (176)
T ss_dssp TSCCEEC
T ss_pred cccceec
Confidence 8888754
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0013 Score=70.76 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=93.5
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP- 248 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~- 248 (829)
...+.|.+..+++|.+.+.- -...+-|.++|++|.|||+||+++++. ... .++.+..+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~----~~~~v~~s~l~s 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGA----NFIFSPASGIVD 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTC----EEEEEEGGGTCC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCC----CEEEEehhhhcc
Confidence 34567888888888776531 145688999999999999999999953 222 23344443211
Q ss_pred ---C-HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh----------------HhHHHhhh--
Q 003330 249 ---N-VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------------AVLEQLIF-- 306 (829)
Q Consensus 249 ---~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~----------------~~~~~l~~-- 306 (829)
. .....+.++.. .....+++|++|+++.. ..+..+..
T Consensus 254 k~~Gese~~ir~~F~~---------------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 254 KYIGESARIIREMFAY---------------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp SSSSHHHHHHHHHHHH---------------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH---------------------HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 1 11122222111 12467899999999832 01222222
Q ss_pred -cC---CCceEEEEeecccc---c---c--ccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003330 307 -RV---PGCKTLVVSRFKFS---T---V--LNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 307 -~~---~gs~iivTtR~~~~---~---~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
++ .+..||.||..... + . ....++++..+.++-.++|+.+.-+....... ....+++.+.|.
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~ 386 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGF 386 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSC
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCC
Confidence 22 23456666654432 2 1 34578888889999999998776443221111 135677777764
No 205
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=97.54 E-value=5.3e-06 Score=78.19 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHHHHHhhhhccccchhh-hccchhhhHhhhhHHhhhHHH--HHHHH
Q 003330 69 SETLKDGIELCRKVLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGS--ARRLE 145 (829)
Q Consensus 69 ~~~l~~~~~~~~d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~ 145 (829)
+++-|-++...+..|.++.||+ .|++++++|.++. .+....|++|.| |++|+++.+.++++|.+++.. -++++
T Consensus 87 Ie~Sri~IvV~S~nYa~S~WCl---~EL~~I~e~~~~~-~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~ 162 (204)
T 3ozi_A 87 IDQSKIYVPIISSGYADSKWCL---MELAEIVRRQEED-PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQ 162 (204)
T ss_dssp HHHCSEEEEEECTTGGGCHHHH---HHHHHHHHHHHHC-TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHH
T ss_pred HHhCcEeeEEEEcccccCcHHH---HHHHHHHHHHHhc-CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHH
Confidence 3444444444568899999999 5788898886432 234568999999 999999999999999998765 36799
Q ss_pred HHhhccccccCCCCcch
Q 003330 146 QRLGAMRIGVGGGGWVD 162 (829)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (829)
+|+.|+....+.+||..
T Consensus 163 ~Wr~AL~~va~lsG~~~ 179 (204)
T 3ozi_A 163 NWKDALKKVGDLKGWHI 179 (204)
T ss_dssp HHHHHHHHHHTSCBEEE
T ss_pred HHHHHHHHHhccCceec
Confidence 99999988888888754
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.001 Score=68.59 Aligned_cols=138 Identities=12% Similarity=0.039 Sum_probs=84.6
Q ss_pred chhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc-cccccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCC
Q 003330 189 ALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDS 266 (829)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~ 266 (829)
++.++.+.+.+..+. .....++|++|+||||+|+.+.+... ....++. +.++..+. ...+.++ +++...+....
T Consensus 3 ~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp -CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 344556677776544 77899999999999999999985311 1111222 23555443 3444443 33444442211
Q ss_pred CCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---cC-CCceEEEEeeccc-cc---cccceEEccCCCH
Q 003330 267 MEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RV-PGCKTLVVSRFKF-ST---VLNDTYEVELLRE 336 (829)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~~-~gs~iivTtR~~~-~~---~~~~~~~l~~L~~ 336 (829)
..+++-++|+|+++. .+..+.+.. .. +.+.+|++|.... +. ... .+++.++++
T Consensus 79 ----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 79 ----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp ----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred ----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 024567899999984 344555544 23 3567777665443 22 223 999999999
Q ss_pred HHHHHHHHHhh
Q 003330 337 DESLSLFCYSA 347 (829)
Q Consensus 337 ~e~~~Lf~~~a 347 (829)
++..+.+...+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 207
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.49 E-value=0.0013 Score=71.26 Aligned_cols=123 Identities=10% Similarity=0.078 Sum_probs=74.4
Q ss_pred ccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccc-ccccCCCCCCE
Q 003330 666 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKY 744 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~ 744 (829)
.+.+|+.+.+..+ ........+..+..|+.+...... .....+..+.+|+.+.+..+ +..++ ..|..+++|+.
T Consensus 251 ~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCCE
Confidence 3445555555443 111222344555666666554321 11134567778888887642 44444 34777888999
Q ss_pred EeccCCcCCCCCcc-ccCCCccccEeeccccccCccCC-cccccccccCceeccch
Q 003330 745 LNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 798 (829)
Q Consensus 745 L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~ 798 (829)
++|.. .+..++. .|.++++|+.+++..+ +..++ ..+..+++|+.+.+..+
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 98864 3555543 5788899999998765 44444 46778888998887654
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=0.00017 Score=68.47 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
....+.|+|++|+||||||+.+++.......+ .+.+++ ..++...+......... . .....+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~------~~~~~~~~~~~~~~~~~-------~---~~~~~~ 98 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFD------TKDLIFRLKHLMDEGKD-------T---KFLKTV 98 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEE------HHHHHHHHHHHHHHTCC-------S---HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEE------HHHHHHHHHHHhcCchH-------H---HHHHHh
Confidence 45789999999999999999999632212222 223443 34444444433321110 0 112222
Q ss_pred cCCcEEEEEcCCCC--hHhH-----HHhhhc--CCCceEEEEeeccc
Q 003330 284 LGSRCLVVLDDVWS--LAVL-----EQLIFR--VPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ~~~~~LlVlDdv~~--~~~~-----~~l~~~--~~gs~iivTtR~~~ 321 (829)
.+.-+|||||++. .+.| ..+... ..|..||+||....
T Consensus 99 -~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 -LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp -HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred -cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 2456899999983 2222 222221 25788888887653
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.46 E-value=0.00052 Score=71.53 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHhhc-------------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIG-------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.+..++.+...+.. ......+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468888888888777643 12356788999999999999999995
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=2e-05 Score=79.29 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=46.7
Q ss_pred cCCCCCCEEecccCCcCC--cccccccCCCCCCEEeccCCcCCCCCccccCCCc--cccEeeccccccCccCCc------
Q 003330 713 GKMKSLQILRLYACPHLR--TLPARICELVCLKYLNISQCVSLSCLPQGIGNLI--RLEKIDMRECSQIWSLPK------ 782 (829)
Q Consensus 713 ~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~lp~------ 782 (829)
.++++|+.|+|++|.... .+|..+..+++|+.|+|++|. +..+ ..+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356677777777755433 344555667777777777753 3333 2233333 788888888886555552
Q ss_pred -ccccccccCcee
Q 003330 783 -SVNSLKSLRQVI 794 (829)
Q Consensus 783 -~l~~l~~L~~L~ 794 (829)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234455555554
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.44 E-value=0.00019 Score=65.19 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=32.8
Q ss_pred cccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|++..+.++.+.+..- .....|.|+|++|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4688888888888877531 2334578999999999999999995
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.41 E-value=0.00038 Score=63.33 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 185 GIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|+...+.++.+.+.. ......|.|+|++|+|||++|+.+++
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 57888888888887743 12334578999999999999999995
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00021 Score=69.27 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=57.0
Q ss_pred hHHHHHHhhcCC---CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCC
Q 003330 192 KNKVKEMVIGRD---DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSME 268 (829)
Q Consensus 192 ~~~l~~~L~~~~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~ 268 (829)
.+.+.+++.... ..+.+.|+|++|+||||||+.+++. ..... ..+.+++.. .+...+.......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~-~~~~~~~~~------~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRN-VSSLIVYVP------ELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTT-CCEEEEEHH------HHHHHHHHC---C----
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcC-CeEEEEEhH------HHHHHHHHHhccc----
Confidence 344455554321 1278999999999999999999963 22222 234466543 3444443322110
Q ss_pred CCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhH------HHhhh-c-CCCceEEEEeecc
Q 003330 269 PNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVL------EQLIF-R-VPGCKTLVVSRFK 320 (829)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~------~~l~~-~-~~gs~iivTtR~~ 320 (829)
.. ......+.. .-+|||||++. ...| ..+.. . ..+.++|+||...
T Consensus 105 ---~~---~~~~~~~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ---TM---NEKLDYIKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CC---HHHHHHHHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---hH---HHHHHHhcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 112222222 23899999964 2222 22221 1 3467888888754
No 214
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0016 Score=69.91 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=91.8
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC---
Q 003330 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--- 247 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--- 247 (829)
..+.|.++.+++|.+.+.- -...+-|.++|++|.|||+||+++++. .... ++.+..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~----fi~vs~s~L~sk 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT----FIRVIGSELVQK 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE----EEEEEGGGGCCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC----eEEEEhHHhhcc
Confidence 3578888888888776421 146788999999999999999999953 3222 234443321
Q ss_pred -CC-HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH----------------h----HHHhh
Q 003330 248 -PN-VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA----------------V----LEQLI 305 (829)
Q Consensus 248 -~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~----------------~----~~~l~ 305 (829)
.+ .....+.++.. .....+++|++|+++... . +..+-
T Consensus 283 ~vGesek~ir~lF~~---------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 283 YVGEGARMVRELFEM---------------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp SSSHHHHHHHHHHHH---------------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH---------------------HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 11 11222222211 124678999999998420 1 12221
Q ss_pred hcCC--CceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003330 306 FRVP--GCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 306 ~~~~--gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
.... +..||.||...... .....++++..+.++-.++|+.+.-+....... ....|++.+.|.
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv----dl~~LA~~T~Gf 414 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI----RWELISRLCPNS 414 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHHCCSC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHCCCC
Confidence 1111 23444455433321 234678899999999999998776332211111 135677777775
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0023 Score=67.92 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC--
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-- 247 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-- 247 (829)
...+.|.++.+++|.+.+.- -...+-|.++|++|.|||.||+++++. .... ++.++.+.-
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~----fi~v~~s~l~s 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT----FLRIVGSELIQ 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE----EEEEESGGGCC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC----EEEEEHHHhhh
Confidence 34567888888888776531 145688999999999999999999953 2222 233443211
Q ss_pred --C-CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh----------------HhHHHhhh--
Q 003330 248 --P-NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------------AVLEQLIF-- 306 (829)
Q Consensus 248 --~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~----------------~~~~~l~~-- 306 (829)
. ......+.++... ....+++|++|+++.. ..+..+..
T Consensus 255 k~vGesek~ir~lF~~A---------------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVA---------------------GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp SSSSHHHHHHHHHHHHH---------------------HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHH---------------------HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 1 1122222222211 1456899999998732 01122221
Q ss_pred -cC---CCceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003330 307 -RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 307 -~~---~gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
+. .+..||.||..... | ..+..++++..+.++-.++|..+.-+....... ....+++.+.|.
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~Gf 387 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDL 387 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSC
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 11 23344445544332 2 123467888889999999998776332211111 135667777664
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0009 Score=71.98 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=91.5
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC--
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-- 247 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-- 247 (829)
...+.|.+..+++|.+.+.- -...+-|.++||+|.|||.||+++++. ... .++.++.+.-
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~----~f~~v~~s~l~~ 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNA----TFLKLAAPQLVQ 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTC----EEEEEEGGGGCS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCC----CEEEEehhhhhh
Confidence 45678888888888876421 145688999999999999999999953 222 2334444321
Q ss_pred --C-CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh------------H----hHHHhhh--
Q 003330 248 --P-NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL------------A----VLEQLIF-- 306 (829)
Q Consensus 248 --~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~------------~----~~~~l~~-- 306 (829)
. ......+.++... ....+++|++|+++.. . ....+..
T Consensus 254 ~~vGese~~ir~lF~~A---------------------~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALA---------------------KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp SCSSHHHHHHHHHHHHH---------------------HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHH---------------------HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 1 1122222222211 1346899999998731 0 1112222
Q ss_pred -cCC---CceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003330 307 -RVP---GCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 307 -~~~---gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
++. +-.||.||..... | .....++++..+.++-.++|+.+.-+......- ....+++.+.|.
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~ 386 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI----NWQELARSTDEF 386 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 222 2344445554432 2 123578889899998889988765332211111 135677777764
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0013 Score=70.67 Aligned_cols=46 Identities=26% Similarity=0.230 Sum_probs=36.9
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+.|.+..+++|.+.+.- -...+-|.++|++|.|||+||+++++
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34668888888888776531 14567899999999999999999995
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0013 Score=77.61 Aligned_cols=149 Identities=10% Similarity=0.093 Sum_probs=83.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc---ccc-ccCCeEEEEEeCCCCCHHHHHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTS-YFNNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++||+.++.++.+.|... ...-+.++|++|+||||+|+.+++.-. +.. .....++.+..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 35799999999999998743 455678999999999999999985311 111 12233322222110
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh----------Hh-HHHhhhcC--CCceEEEEeeccc---
Q 003330 259 GFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------AV-LEQLIFRV--PGCKTLVVSRFKF--- 321 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~----------~~-~~~l~~~~--~gs~iivTtR~~~--- 321 (829)
+.+.. ........+...+... ..++.+|++|+++.. .+ ...+.... .+..+|.+|....
T Consensus 254 --~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 --LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ---CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHC
T ss_pred --hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhh
Confidence 00000 0001111122222222 345789999999854 11 22333332 2455666555432
Q ss_pred -----cc--cccceEEccCCCHHHHHHHHHHhh
Q 003330 322 -----ST--VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 322 -----~~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.+ .....+.++..+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 222468899999999988887554
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.0044 Score=62.39 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=86.8
Q ss_pred ccccccchhhHHHHHHhh---cC--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVI---GR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~---~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++++.+++. .. ...+-+.|+|++|+||||||+.+++. .... ++.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~----~~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP----FFTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC----EEEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC----EEEEeHHHHHH--
Confidence 456787777776665532 11 22456889999999999999999953 2211 22332221100
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh----------------HhHHHhhh---c---C
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------------AVLEQLIF---R---V 308 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~----------------~~~~~l~~---~---~ 308 (829)
.. .......+....+.. ...+.++++|+++.. .....+.. . .
T Consensus 84 --------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 000111122222222 455789999998421 11222221 1 1
Q ss_pred CCceEEEEeeccc-cc-------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHH
Q 003330 309 PGCKTLVVSRFKF-ST-------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKV 378 (829)
Q Consensus 309 ~gs~iivTtR~~~-~~-------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 378 (829)
.+..||.||.... +. .....+.++..+.++-.+++..+.-... ..+.. ....++..+.| .+--+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~---~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI---DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC---CHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc---cHHHHHHHcCCCCHHHHHH
Confidence 2345555555443 11 1134677888888888888877653211 11111 23456677777 5654443
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00015 Score=72.85 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.3
Q ss_pred ccCcCCCcEEEecccc
Q 003330 688 ICGLQSLKNLSVTNCH 703 (829)
Q Consensus 688 i~~l~~L~~L~l~~~~ 703 (829)
+..+++|+.|+|++|.
T Consensus 192 ~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHHSTTCCEEECTTSC
T ss_pred HhhCCCCCEEECCCCc
Confidence 3344444444444443
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.0031 Score=74.41 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=78.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc---ccccc-cCCeEEEEEeCCCCCHHHHHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSY-FNNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~-F~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++.- .+-.. ....++.++.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g------------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc-------------
Confidence 35899999999999998753 34457899999999999999998531 01111 12222222220
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCChHhHHHhhhcCC--CceEEEEeecccc--------c--cc
Q 003330 259 GFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFRVP--GCKTLVVSRFKFS--------T--VL 325 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~~~~~~l~~~~~--gs~iivTtR~~~~--------~--~~ 325 (829)
... .......+....... ..++.+|++| ...+....+.+... ..++|.||..... + ..
T Consensus 246 ----~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 246 ----TKY---RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ----ccc---cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 000 000111222222222 4567899999 32233333444322 3566666654441 1 22
Q ss_pred cceEEccCCCHHHHHHHHHHhh
Q 003330 326 NDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 326 ~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
...+.++..+.++..+++....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHH
Confidence 2578999999999999998654
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.17 E-value=0.00049 Score=70.04 Aligned_cols=46 Identities=28% Similarity=0.164 Sum_probs=34.6
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++|.+..++.+.+++.. ....+-+.++|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3578888888887776541 122345789999999999999999963
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.16 E-value=0.0064 Score=62.82 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=35.4
Q ss_pred cccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|+...+.++.+.+..- .....|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4688888888888877532 3445678999999999999999996
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.13 E-value=0.009 Score=65.32 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=89.2
Q ss_pred ccccccchhhHHHHHHhhc---C--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 183 LMGIGMALGKNKVKEMVIG---R--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++++.+++.. . ...+-|.++|++|.||||||+.+++. ... .++.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~----~f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANV----PFFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTC----CEEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCC----CeeeCCHHHHHHH-
Confidence 4568888877777766421 1 22356889999999999999999963 221 2234443321110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHH-hhcCCcEEEEEcCCCCh----------------HhHHHhhh---cC---
Q 003330 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ-SKLGSRCLVVLDDVWSL----------------AVLEQLIF---RV--- 308 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~LlVlDdv~~~----------------~~~~~l~~---~~--- 308 (829)
. ...........+. .....+.+|+||+++.. ..+..+.. ++
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 0000011111121 12467899999999642 12233322 11
Q ss_pred CCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003330 309 PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 309 ~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
.+..||.||...... .....+.++..+.++-.+++..++-...-. ... ....+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chh---hHHHHHHhcCCCc
Confidence 244555555544321 112378888888888888887766332211 111 1345788888876
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.0024 Score=66.46 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 185 GIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|.+..++.+...+... .....+.++|++|+||||+|+.+++
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 467777777776666431 1245899999999999999999995
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.07 E-value=0.0056 Score=67.53 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=93.9
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003330 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
..++|.+..++++.+++.. ....+-|.|+|++|+|||++|+++++. .. ..++.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~----~~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TG----AFFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CS----SEEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hC----CCEEEEEch-----
Confidence 4578999999999888742 244567999999999999999999853 22 222234321
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------HhHHHhh---hc--CC-C
Q 003330 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLI---FR--VP-G 310 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~~~~~l~---~~--~~-g 310 (829)
. +...+. ..........+.. ..+++.+|+||+++.. .....+. .. .+ +
T Consensus 273 -~----l~~~~~-------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -E----IMSKLA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -H----HHTSCT-------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -H----hhhhhc-------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 111100 0001111111211 2466789999999421 1112222 21 12 3
Q ss_pred ceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc-hhHHHHH
Q 003330 311 CKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVI 379 (829)
Q Consensus 311 s~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 379 (829)
..||.||..... + .....+.++..+.++-.+++..++-........ ...++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCcHHHHHHH
Confidence 344445544421 1 122468899999999999998876332211111 235566677664 4444444
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.05 E-value=0.007 Score=70.27 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=92.3
Q ss_pred cccccccchhhHHHHHHhhc----C--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC----
Q 003330 182 NLMGIGMALGKNKVKEMVIG----R--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS---- 245 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~----~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~---- 245 (829)
...+.|.+..+++|.+++.- . ...+-|.++|++|.|||+||+++++ .... ..+.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~----~~~~v~~~~l~s 276 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGA----FFFLINGPEIMS 276 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTC----EEEEEEHHHHHS
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCC----eEEEEEhHHhhc
Confidence 34567888888888887521 1 3567899999999999999999995 3332 23344432
Q ss_pred CCC-CHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh-------------HhHHHhh---hcC
Q 003330 246 QSP-NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL-------------AVLEQLI---FRV 308 (829)
Q Consensus 246 ~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~-------------~~~~~l~---~~~ 308 (829)
... ..+..++.++.. .....+++|++|+++.. .....+. .+.
T Consensus 277 k~~gese~~lr~lF~~---------------------A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 277 KLAGESESNLRKAFEE---------------------AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp SCTTHHHHHHHHHHHH---------------------HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred ccchHHHHHHHHHHHH---------------------HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence 111 111222222221 12467899999998742 0112222 222
Q ss_pred C---CceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003330 309 P---GCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 309 ~---gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
. +..||.||..... + .....++++..+.++-.++|..+.-+....... ....+++++.|.-
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 1 2334444443321 1 123578889999999999998776332211111 2456788887764
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00072 Score=61.67 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.6
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....|..- .-..++|+|+.|+|||||++.+++.
T Consensus 27 ~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 27 LVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp HHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred HHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34444332 5578999999999999999999964
No 229
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.02 E-value=0.018 Score=62.09 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=52.4
Q ss_pred hccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeeccccccCccCC-cccccc
Q 003330 711 DIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLP-KSVNSL 787 (829)
Q Consensus 711 ~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l 787 (829)
.+.++++|+.+.+.. .+..++. .|..+++|+.+.|.. .+..+.. .|..+++|+.+.|..+ +..++ ..+.++
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C 356 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNC 356 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTC
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCC
Confidence 345556666666542 2334443 456677888888764 2444433 4778888888888654 45554 356778
Q ss_pred cccCceeccchh
Q 003330 788 KSLRQVICEEDV 799 (829)
Q Consensus 788 ~~L~~L~~~~~~ 799 (829)
++|+.+.+.++.
T Consensus 357 ~~L~~i~~~~~~ 368 (394)
T 4gt6_A 357 TALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEESSCH
T ss_pred CCCCEEEECCce
Confidence 888888877653
No 230
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.91 E-value=0.012 Score=63.39 Aligned_cols=142 Identities=12% Similarity=0.115 Sum_probs=92.1
Q ss_pred ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccC
Q 003330 636 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGK 714 (829)
Q Consensus 636 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~ 714 (829)
+..+.+|+.+.+..+... .....+..++.|+.+...... .....+..+.+|+.+.+..+ +..++ ..+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~-----i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~ 318 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-----IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFES 318 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-----ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTT
T ss_pred ccccccceeEEcCCCcce-----eeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcC
Confidence 445566666666543211 111223345666666554431 11235678899999999763 55554 56888
Q ss_pred CCCCCEEecccCCcCCccc-ccccCCCCCCEEeccCCcCCCCCcc-ccCCCccccEeeccccccCccCCcccccccccCc
Q 003330 715 MKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQ 792 (829)
Q Consensus 715 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 792 (829)
+.+|+.+.+.. .+..++ ..|..+++|+.+.+..+ +..++. .|.++++|+.+++..+ +..+...+.++++|+.
T Consensus 319 c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 319 CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 99999999964 255554 45788999999999763 555544 5889999999999765 3444556777777765
Q ss_pred e
Q 003330 793 V 793 (829)
Q Consensus 793 L 793 (829)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 231
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.82 E-value=0.011 Score=63.78 Aligned_cols=100 Identities=15% Similarity=0.308 Sum_probs=66.6
Q ss_pred cccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCccc-ccccCCCCCCEEeccCCcCCCCCcc-ccCCC
Q 003330 687 SICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNL 763 (829)
Q Consensus 687 ~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l 763 (829)
.+.++++|+.+.+.. .+..++ ..|.++.+|+.+.|..+ +..+. ..|..+++|+.+.|.. .+..+.. .|.++
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C 356 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNC 356 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTC
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCC
Confidence 355667777777753 245554 56788999999999753 44454 4578899999999965 3556644 58999
Q ss_pred ccccEeeccccccCccCCcccccccccCceec
Q 003330 764 IRLEKIDMRECSQIWSLPKSVNSLKSLRQVIC 795 (829)
Q Consensus 764 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~ 795 (829)
++|+.+++.++.... ..+..+.+|+.+.+
T Consensus 357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 357 TALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp TTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 999999999875221 24455666766654
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.82 E-value=0.0038 Score=63.19 Aligned_cols=44 Identities=25% Similarity=0.082 Sum_probs=32.6
Q ss_pred cccccchhhHHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.+..+.++.+.+.. ......|.|+|++|+|||++|+.+++
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 357888888887776643 12345678999999999999999995
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.82 E-value=0.0073 Score=62.05 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999995
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0073 Score=59.00 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=38.4
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHH
Q 003330 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (829)
.+-+++.+. ..-.++.|+|++|+||||||..++. . -...++|++.....+...+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEESSCCCCHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEECCCCCCHHHHH
Confidence 344455322 4567999999999999999999985 1 12456788877655655544
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.099 Score=52.83 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-+.++|++|.||||||+.++.
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999995
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.31 E-value=0.0092 Score=67.00 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=31.4
Q ss_pred cccccchhhHHHHHHhh-----cCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVI-----GRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|.+.-++.+.+.+. .......+.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35666665555544332 113456899999999999999999995
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.23 E-value=0.049 Score=54.45 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=31.0
Q ss_pred ccccccchhhHHHHHHhhc--C---------CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++|.+..+.++.++... . .-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456766666655554321 0 11234899999999999999999953
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.19 E-value=0.0039 Score=64.54 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=26.6
Q ss_pred hHHHHHHhhcCC--CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 192 KNKVKEMVIGRD--DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 192 ~~~l~~~L~~~~--~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.+.+++.... ....+.++|++|+|||+||.++++
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 334445554321 257889999999999999999996
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.18 E-value=0.007 Score=71.36 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=78.5
Q ss_pred ccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHH
Q 003330 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (829)
..++|.+..++.+.+.+... .....+.++|++|+|||++|+.+++.- ..... .++.++.+...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l-~~~~~--~~i~i~~s~~~~~---- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI-FGDEE--SMIRIDMSEYMEK---- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH-HSCTT--CEEEEEGGGGCSS----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCc--ceEEEechhcccc----
Confidence 35789998888888877531 123479999999999999999999531 11111 2234554422110
Q ss_pred HHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---c------------CCCceEEEEe
Q 003330 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R------------VPGCKTLVVS 317 (829)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~------------~~gs~iivTt 317 (829)
.... ...+....+ ......|+||+++.. +....+.. . ....+||+||
T Consensus 564 ----------~~~~----~~~l~~~~~--~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 564 ----------HSTS----GGQLTEKVR--RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----------CCCC-------CHHHHH--HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ----------cccc----cchhhHHHH--hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0000 001111111 233458999999843 33333321 1 2256788888
Q ss_pred eccc-------------c--c---cccceEEccCCCHHHHHHHHHHhh
Q 003330 318 RFKF-------------S--T---VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 318 R~~~-------------~--~---~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.... . . .....+.+++++.++-.+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 7311 0 0 223578899999998888876554
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.17 E-value=0.036 Score=65.30 Aligned_cols=46 Identities=26% Similarity=0.124 Sum_probs=38.0
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|.+..++++.+++.. -.....|.|+|++|+||||||+.+++
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34679999999999988742 13456799999999999999999985
No 241
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.14 E-value=0.054 Score=59.54 Aligned_cols=46 Identities=28% Similarity=0.229 Sum_probs=33.7
Q ss_pred ccccccchhhHHHHHHhh---cC--------CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVI---GR--------DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~---~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++|.+..+.++.++.. .. .-.+-+.|+|++|+||||||+.++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457888887777766542 11 11345899999999999999999953
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.11 E-value=0.0047 Score=63.09 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (829)
.-+++.|+|++|+||||||.+++.. ... .+.|+++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~----~G~--~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA----LGG--KDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH----HHT--TSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh----CCC--CEEEEEe
Confidence 3467789999999999999999853 222 3347776
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.74 E-value=0.092 Score=61.82 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=34.8
Q ss_pred ccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..++.+...+... .....+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 34688888888777766421 2334799999999999999999995
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.72 E-value=0.032 Score=58.57 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=44.0
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCeEEEEEeCCCCCHHHHHHH
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..+-.+|.++ ..-.++.|+|++|+||||||..++........ -...++|++....++...+...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555556433 56679999999999999999998853222111 2346779998887777766543
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.65 E-value=0.025 Score=57.46 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHHHhh----cCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc-CCeEEEEEeCCCCCHH
Q 003330 193 NKVKEMVI----GRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. ++=...++-|.|++|+||||||.+++. .....+ ...++|++....++..
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH
Confidence 34555565 331223789999999999999999884 333332 4567799988887764
No 246
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.58 E-value=0.19 Score=53.55 Aligned_cols=101 Identities=13% Similarity=0.280 Sum_probs=53.2
Q ss_pred cCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEeccCCcCCCCCcc-ccCCCcc
Q 003330 689 CGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQ-GIGNLIR 765 (829)
Q Consensus 689 ~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~ 765 (829)
.++.+|+.+.+..+ +..+. ..+.++.+|+.+.+.. .+..++. .+..+++|+.+.+.++ .+..++. .|.++++
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence 34455555555432 22222 3344555666666543 2333332 3556677777777552 3444433 4667777
Q ss_pred ccEeeccccccCccCC-cccccccccCceecc
Q 003330 766 LEKIDMRECSQIWSLP-KSVNSLKSLRQVICE 796 (829)
Q Consensus 766 L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~ 796 (829)
|+.+.|..+ +..++ ..+.++++|+.+.+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 777777543 34443 245566777766653
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.57 E-value=0.022 Score=59.31 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=43.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCeEEEEEeCCCCCHHHHHHH
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..+-.+|.++ ..-.++.|+|++|+||||||..++........ ....++|++....++..++...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~ 161 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM 161 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4455555332 45679999999999999999998853221111 1456779999888777766543
No 248
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.026 Score=58.87 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCCCC
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSP 248 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~ 248 (829)
++++.+..-..-..++|+|++|+|||||++.+.+. +.. +=+..++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCCh
Confidence 45666665456779999999999999999998852 222 212234456666543
No 249
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.40 E-value=0.019 Score=61.97 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHH
Q 003330 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVW 258 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~ 258 (829)
.++.|..-..-+.++|+|.+|+|||||+..+..+ ....+...+.++-+++.. +..++..++.
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4555543233456899999999999999999853 333333333356666543 3445555443
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.25 E-value=0.013 Score=56.81 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=26.6
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|.+.+... ....+|+|+|+.|.|||||++.+..
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 4667999999999999999999985
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.25 E-value=0.029 Score=58.41 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=43.8
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccc---------ccC----CeEEEEEeCCCCCHHHHHHH
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTS---------YFN----NRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F~----~~~~wv~v~~~~~~~~l~~~ 256 (829)
..+-.+|.+. ..-.++.|.|++|+||||||..++....... ... ..++|++....++..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 4455555432 4567999999999999999999885322211 111 46779999888777776644
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.24 E-value=0.024 Score=59.31 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. +. ..-+++.|.|++|+||||||..++.. ... -...++|++....++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~-~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQK-MGGVAAFIDAEHALDPV 104 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHH-TTCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHh-cCCeEEEEecccccchH
Confidence 45555554 22 45679999999999999999999853 221 12356688887776654
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.23 E-value=0.083 Score=62.97 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.+..+..+...+... .....+.|+|++|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689988888887777421 1236899999999999999999985
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.20 E-value=0.016 Score=55.80 Aligned_cols=38 Identities=32% Similarity=0.352 Sum_probs=29.1
Q ss_pred hhhHHHHHHhhcC--CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 190 LGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 190 ~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++++.+.+... ....+|+|.|++|+||||+++.+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445566666532 4567999999999999999999884
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.87 E-value=0.013 Score=54.79 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 003330 206 SVLGICGIGGSGKTTLALEV 225 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v 225 (829)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.84 E-value=0.013 Score=55.08 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999984
No 257
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.79 E-value=0.17 Score=54.32 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999998884
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.017 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999984
No 259
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.75 E-value=0.18 Score=54.18 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
...+|.++|++|+||||++..++.. .... ..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~-G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKR-GYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHT-TCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEecC
Confidence 4689999999999999999988843 2222 2345455543
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.015 Score=54.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999985
No 261
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.69 E-value=0.0032 Score=59.74 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=34.7
Q ss_pred hhcCCCCceEEEccc-cCCccccCC-CcccCCccccceeeecccccC-----CCCCCccccCCCceEEeeeccccc
Q 003330 586 IENMEKLRALIVINY-STSNAALGN-FSVCSNLTNLRSLWLEKVSIS-----QLPKSSIPLKKMQKISFVLCKINN 654 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~ 654 (829)
+.+-+.|+.|++.++ ......... ...+..-..|+.|+|++|.+. .+...+..-+.|++|+|++|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 444566777777654 332211111 122334456677777777665 222233334556666666655543
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.65 E-value=0.016 Score=53.93 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 263
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.59 E-value=0.018 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|+|++|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.51 E-value=0.019 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999984
No 265
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.49 E-value=0.074 Score=52.59 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=39.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCeEEEEEeCCCCCHHHH
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l 253 (829)
..+-++|.+. ..-.++.|+|++|+||||||+.++........ -...++|++....+....+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 3455555332 45679999999999999999999853122110 1346668887765555544
No 266
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.46 E-value=0.0062 Score=57.73 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=56.9
Q ss_pred CCccccceeeeccc-ccC-----CCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCcc
Q 003330 614 SNLTNLRSLWLEKV-SIS-----QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPS 687 (829)
Q Consensus 614 ~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~ 687 (829)
.+-+.|+.|+|+++ .+. .+.+.+..-..|+.|+|++|.+.......+. ..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA------------------------~a 93 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI------------------------EL 93 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH------------------------HH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH------------------------HH
Confidence 34467788888775 554 2333344445666666666665433222222 22
Q ss_pred ccCcCCCcEEEeccccccc----cchhhccCCCCCCEEecccCC--cCC-----cccccccCCCCCCEEeccCC
Q 003330 688 ICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACP--HLR-----TLPARICELVCLKYLNISQC 750 (829)
Q Consensus 688 i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~--~l~-----~lp~~~~~l~~L~~L~l~~~ 750 (829)
+..-+.|+.|+|++|.... .+...+..-+.|+.|+|++|. .++ .+...+..-++|+.|+++.|
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2233455555555554321 233344455556677666432 222 12333444566777777653
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.43 E-value=0.064 Score=57.22 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=40.4
Q ss_pred hHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccc---ccCCeEEEEEeCCCCCHHHHH
Q 003330 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTS---YFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~~wv~v~~~~~~~~l~ 254 (829)
...+-++|... ..-.++.|+|++|+|||||+..++-.-.... .-...++|++....+....+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~ 230 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV 230 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH
Confidence 34566666433 4567999999999999999997652111111 123456688877766655543
No 268
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.37 E-value=0.024 Score=54.44 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|++|.||||+|+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999985
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.37 E-value=0.016 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
|.|.|+||+|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999984
No 270
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.35 E-value=0.37 Score=50.41 Aligned_cols=159 Identities=11% Similarity=-0.034 Sum_probs=96.4
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCC
Q 003330 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYV 272 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 272 (829)
+++.+.+. +.-.++..++|+.|.||++.|..+... -....|+.. ..+.+....++.++...+...
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~------------ 71 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQV-AAAQGFEEH-HTFSIDPNTDWNAIFSLCQAM------------ 71 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHH-HHHHTCCEE-EEEECCTTCCHHHHHHHHHHH------------
T ss_pred HHHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHH-HHhCCCCee-EEEEecCCCCHHHHHHHhcCc------------
Confidence 34555555 456678999999999999999998852 122334321 123344444555544332111
Q ss_pred cchhhHHHHhhcCCcEEEEEcCCCC---hHhHHHhhh---cC-CCceEEEEeecc-------ccc----cccceEEccCC
Q 003330 273 IPHWNLQIQSKLGSRCLVVLDDVWS---LAVLEQLIF---RV-PGCKTLVVSRFK-------FST----VLNDTYEVELL 334 (829)
Q Consensus 273 ~~~~~~~~~~~~~~~~LlVlDdv~~---~~~~~~l~~---~~-~gs~iivTtR~~-------~~~----~~~~~~~l~~L 334 (829)
.+-+++-++|+|+++. .+.++.+.. .. +++.+|++|... .+. .....++..++
T Consensus 72 ---------plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 72 ---------SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp ---------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred ---------CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 1235566888999865 344555543 22 366777666431 111 34467889999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003330 335 REDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 335 ~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
+.++........+-..+. ...++.+..+++.++|.+..+..
T Consensus 143 ~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CTTHHHHHHHHHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 999988887776532221 22356788899999998877654
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.34 E-value=0.022 Score=54.63 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|+.|+|||||++.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.34 E-value=0.018 Score=53.80 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.31 E-value=0.04 Score=57.85 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=39.1
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. .. ..-+++.|.|++|+||||||.+++.. .... ...++|++....++..
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAA-GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCCCcCHH
Confidence 44555554 22 45679999999999999999999843 2211 2356799988776653
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.28 E-value=0.024 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999985
No 275
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.26 E-value=0.52 Score=50.01 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=68.4
Q ss_pred CccccccccccccccccccC-CccccCcCCCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCccc-ccccCCCC
Q 003330 665 KTLPCLTELTFDHCDDLMKL-PPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVC 741 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~ 741 (829)
..+.+|+.+.+..+ +..+ ...+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++ .+..++ ..|..+++
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence 34666777777553 3333 345667888888888653 44554 45678888999888763 344443 45778888
Q ss_pred CCEEeccCCcCCCCCcc-ccCCCccccEeecccc
Q 003330 742 LKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMREC 774 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 774 (829)
|+.+.|.. .+..++. .|.++++|+.+.+..+
T Consensus 312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 99998864 3555543 4778888888887644
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.24 E-value=0.023 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.16 E-value=0.024 Score=52.79 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999765
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.13 E-value=0.036 Score=52.44 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=27.2
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+..++.+-...+.+.|+|++|.||||+|..+++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 345666665323345799999999999999999985
No 279
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.11 E-value=0.033 Score=54.12 Aligned_cols=109 Identities=10% Similarity=-0.091 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
.-.++.|.|+.|+||||++..+.... ..+-. +++.+...... . -...+.+.++.... ..........++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~-kVli~~~~~d~--r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADV-KYLVFKPKIDT--R-SIRNIQSRTGTSLP---SVEVESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTC-CEEEEEECCCG--G-GCSSCCCCCCCSSC---CEEESSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCC-EEEEEEeccCc--h-HHHHHHHhcCCCcc---ccccCCHHHHHHHH
Confidence 45788999999999999998888533 22211 34344332211 1 11122222221110 00011112222222
Q ss_pred ----c-CCcEEEEEcCCCC--hHhHHHhhh-cCCCceEEEEeeccc
Q 003330 284 ----L-GSRCLVVLDDVWS--LAVLEQLIF-RVPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ----~-~~~~LlVlDdv~~--~~~~~~l~~-~~~gs~iivTtR~~~ 321 (829)
. ++.-+||+|.+.. .++++.+.. .-.|..||+|.+...
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 2 2345999999874 344333322 113788999988543
No 280
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.11 E-value=0.028 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999985
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.021 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.09 E-value=0.039 Score=56.22 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|+.|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998874
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.05 E-value=0.035 Score=58.95 Aligned_cols=43 Identities=33% Similarity=0.278 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHhhc------------C--CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 185 GIGMALGKNKVKEMVIG------------R--DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~------------~--~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|.+..++.+...+.. . ...+.|.++|++|+|||++|+.+++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 57777777777766620 1 1346789999999999999999995
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.04 E-value=0.028 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.01 E-value=0.027 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.01 E-value=0.028 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999984
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.94 E-value=0.023 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.90 E-value=0.033 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.87 E-value=0.03 Score=56.02 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999984
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.86 E-value=0.03 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 291
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.85 E-value=0.03 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.82 E-value=0.025 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999985
No 293
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.81 E-value=0.033 Score=53.88 Aligned_cols=24 Identities=50% Similarity=0.598 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.80 E-value=0.035 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|+.|+||||+++.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.78 E-value=0.028 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|+|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.75 E-value=0.033 Score=52.91 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999985
No 297
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.72 E-value=0.2 Score=54.55 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=46.5
Q ss_pred ccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
|.......+-+++.+-..-.++.|.|.+|+||||+|..++.+... .....++|++.. .+..++...++....
T Consensus 182 ~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 182 GVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp -CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred cccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 334444566666632256679999999999999999999853222 223356677665 455677777665543
No 298
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.71 E-value=0.057 Score=56.69 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. +. ..-+++.|.|.+|+||||||.+++.. .... ...++|++....++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPI 106 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEeCCCCccHH
Confidence 45555553 22 45679999999999999999998843 2221 2356799988777644
No 299
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.68 E-value=0.04 Score=60.70 Aligned_cols=41 Identities=10% Similarity=-0.088 Sum_probs=32.9
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.+..++.+...+..+ ..|.++|++|+|||+||+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHH
Confidence 4578887777777666532 4788999999999999999995
No 300
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.65 E-value=0.069 Score=56.26 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. ++ ..-+++.|.|.+|+||||||..++.. .... ...++|++....++..
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~-g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKA-GGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHC-CCeEEEEECCCChhHH
Confidence 45555564 22 45678999999999999999998843 2211 2356799998776654
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.63 E-value=0.029 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.|.|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999984
No 302
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.61 E-value=0.21 Score=51.87 Aligned_cols=105 Identities=14% Similarity=0.034 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003330 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
-.+++|+|+.|.|||||++.+..- .. .-.+.+ .+.-......... + ..+.. . ..............+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i-~i~~~~e~~~~~~-~---~~i~~---~-~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF--IP-KEERII-SIEDTEEIVFKHH-K---NYTQL---F-FGGNITSADCLKSCLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEE-EEESSCCCCCSSC-S---SEEEE---E-CBTTBCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEE-EECCeeccccccc-h---hEEEE---E-eCCChhHHHHHHHHhh
Confidence 458999999999999999999853 22 122233 3321111000000 0 00000 0 0011111122233345
Q ss_pred CCcEEEEEcCCCChHhHHHhhhcCCCc-eEEEEeeccc
Q 003330 285 GSRCLVVLDDVWSLAVLEQLIFRVPGC-KTLVVSRFKF 321 (829)
Q Consensus 285 ~~~~LlVlDdv~~~~~~~~l~~~~~gs-~iivTtR~~~ 321 (829)
.++=++++|++.+.+.++.+.....|. -+|+||....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence 667788999998876666555433444 3677766543
No 303
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.61 E-value=0.22 Score=53.53 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHh
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGF 260 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~ 260 (829)
++++.|..-..-.-++|.|.+|+|||+|+..+.+.. .+.+-+ .++++-+++. .++.++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~-v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGG-YSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSS-EEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCC-EEEEEECCCcchHHHHHHHHhhhc
Confidence 567777644566789999999999999999998532 122223 3346666654 3456676766653
No 304
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.61 E-value=0.036 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.60 E-value=0.039 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.58 E-value=0.03 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 307
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.57 E-value=0.037 Score=57.95 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=33.4
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|++..++.+...+..+ ..+.++|++|+|||+||+.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHH
Confidence 4688888877777777642 4688999999999999999985
No 308
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.55 E-value=0.16 Score=52.47 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhh
Q 003330 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (829)
..+-+++.+-..-.++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...+....
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHHH
Confidence 44555553225668999999999999999999885332222 356677765 56667777766554
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.55 E-value=0.036 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999984
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.55 E-value=0.039 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++++|.|+.|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.55 E-value=0.041 Score=53.02 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 312
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.54 E-value=0.048 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999995
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.51 E-value=0.056 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 314
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.51 E-value=0.064 Score=55.85 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
++++.+..-..-.-++|+|.+|+|||+|+..+.+.-. .++=+..++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~-~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA-ENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH-HHCTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh-hcCCCeEEEEEEeccC
Confidence 5677776545667889999999999999999886321 1122223445666544
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.45 E-value=0.043 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999999885
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.43 E-value=0.042 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|++|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 317
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.43 E-value=0.048 Score=55.42 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=32.4
Q ss_pred ccccccchhhHHHHHHhhc--C---------CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++|.+..++++.++... . .-.+-+.|+|++|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 4567877776666655421 0 11233899999999999999999953
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.39 E-value=0.045 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.39 E-value=0.041 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|++|+|||||++.++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999984
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.38 E-value=0.039 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.37 E-value=0.043 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999884
No 322
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.37 E-value=0.08 Score=55.57 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=60.1
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcc
Q 003330 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIP 274 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 274 (829)
+.+++.. .-.+++|+|+.|+||||+.+.+..- +.......+ +++.+..... .......+. .. .......
T Consensus 115 l~~l~~~--~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i--~t~ed~~e~~--~~~~~~~v~-q~--~~~~~~~ 183 (356)
T 3jvv_A 115 FKRVSDV--PRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI--LTIEDPIEFV--HESKKCLVN-QR--EVHRDTL 183 (356)
T ss_dssp HHHHHHC--SSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE--EEEESSCCSC--CCCSSSEEE-EE--EBTTTBS
T ss_pred HHHHHhC--CCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE--EEccCcHHhh--hhcccccee-ee--eeccccC
Confidence 4444432 3449999999999999999998742 222212233 2332221100 000000000 00 0000011
Q ss_pred hhh-HHHHhhcCCcEEEEEcCCCChHhHHHhhh-cCCCceEEEEeeccc
Q 003330 275 HWN-LQIQSKLGSRCLVVLDDVWSLAVLEQLIF-RVPGCKTLVVSRFKF 321 (829)
Q Consensus 275 ~~~-~~~~~~~~~~~LlVlDdv~~~~~~~~l~~-~~~gs~iivTtR~~~ 321 (829)
.+. .....+...+=+|++|.+.+.+.++.+.. ...|..|++||....
T Consensus 184 ~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 184 GFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred CHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccCh
Confidence 112 23334467778899999998877766443 334777888887654
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.36 E-value=0.047 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.34 E-value=0.039 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999984
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.30 E-value=0.045 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||++.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999985
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.25 E-value=0.049 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.22 E-value=0.047 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|++.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.052 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.21 E-value=0.064 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3566999999999999999999874
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.20 E-value=0.047 Score=52.59 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.18 E-value=0.049 Score=54.72 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 332
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.17 E-value=0.21 Score=53.91 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHHh
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGF 260 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~ 260 (829)
++++.|..-..-.-++|.|.+|+|||+|+..+.+.. .+.+-+. ++++-+++.. ++.++.+++...
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v-~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGV-SVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSC-EEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCE-EEEEEcccCcHHHHHHHHhhhcc
Confidence 456777654566789999999999999999998531 2223343 4477776654 566777777653
No 333
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.16 E-value=0.04 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.16 E-value=0.035 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999984
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.14 E-value=0.044 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 336
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.13 E-value=0.057 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||.+.++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.12 E-value=0.057 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.08 E-value=0.04 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 339
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.05 E-value=0.073 Score=58.37 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.4
Q ss_pred ccccccchhhHHHHHHh---hcC-CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 183 LMGIGMALGKNKVKEMV---IGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L---~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++|.+..++.+..++ ..+ ...+-+.++|++|+|||++|+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 45789888877655544 222 23467899999999999999999953
No 340
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.05 E-value=0.073 Score=55.17 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+....|.|+|++|+||||+++.++.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4566799999999999999999884
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.02 E-value=0.056 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+|||||++.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999875
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.02 E-value=0.06 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.|+|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999984
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.98 E-value=0.065 Score=52.52 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCC
Q 003330 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQ 246 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~ 246 (829)
.+-++|... ..-.+++|+|++|+|||||++.++...... ......++|+.-..
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 344444322 456799999999999999999997421211 11334455666544
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.97 E-value=0.052 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 205 LSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
No 345
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.96 E-value=0.054 Score=52.64 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999853
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.86 E-value=0.055 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.85 E-value=0.043 Score=51.69 Aligned_cols=115 Identities=16% Similarity=0.035 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC---CCHHHHHHHHHHhh--cCCCCCCCCCC----cc--
Q 003330 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS---PNVEQLRAKVWGFV--SGCDSMEPNYV----IP-- 274 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~---~~~~~l~~~i~~~l--~~~~~~~~~~~----~~-- 274 (829)
..|-|++..|.||||.|-...-. .....+ ++.++...+. .+...++..+--.+ .+......... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR-A~g~G~--rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR-AVGHGK--NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH-HHHTTC--CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHHCCC--eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 45666666779999999888731 223333 4555644332 23334443331000 00000000000 01
Q ss_pred --hhhHHHHhh-cCCcEEEEEcCCCC--------hH-hHHHhhhcCCCceEEEEeeccccc
Q 003330 275 --HWNLQIQSK-LGSRCLVVLDDVWS--------LA-VLEQLIFRVPGCKTLVVSRFKFST 323 (829)
Q Consensus 275 --~~~~~~~~~-~~~~~LlVlDdv~~--------~~-~~~~l~~~~~gs~iivTtR~~~~~ 323 (829)
.+....+.+ .++-=|||||++.. .+ .++.+....+...||+|+|.....
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 122222333 35566999999842 23 344455556688999999998754
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.82 E-value=0.06 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.81 E-value=0.054 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.77 E-value=0.058 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999984
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.74 E-value=0.06 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999983
No 352
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.72 E-value=0.21 Score=52.87 Aligned_cols=105 Identities=11% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC--CC--CCCCcchhh-
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS--ME--PNYVIPHWN- 277 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~--~~--~~~~~~~~~- 277 (829)
..-.+++|+|+.|+||||+++.+..- ........+.++. +.... .+..... .+ .......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHH
Confidence 35578999999999999999999852 2211134443332 11110 0000000 00 000011112
Q ss_pred HHHHhhcCCcEEEEEcCCCChHhHHH-hhhcCCCceEEEEeecc
Q 003330 278 LQIQSKLGSRCLVVLDDVWSLAVLEQ-LIFRVPGCKTLVVSRFK 320 (829)
Q Consensus 278 ~~~~~~~~~~~LlVlDdv~~~~~~~~-l~~~~~gs~iivTtR~~ 320 (829)
.....+...+-+|++|.+.+.+.+.. +.....|..|+.|+...
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTN 244 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCC
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcc
Confidence 22233444566899999987665543 33344566777666554
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.70 E-value=0.061 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.68 E-value=0.043 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 355
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.68 E-value=0.2 Score=52.46 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=37.1
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCeEEEEEeCCCCCHH
Q 003330 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVE 251 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~ 251 (829)
.+-.+|... ..-+++.|+|++|+|||||+..++......... ...++|++....+...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 444555332 466899999999999999999998532111111 2455688776554333
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.68 E-value=0.059 Score=51.18 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 357
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.65 E-value=0.19 Score=51.38 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (829)
..-.+++|.|++|+|||||++.++...... -...++|+.... ...++...+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 566799999999999999999998532222 122455665543 344555554443
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.59 E-value=0.041 Score=51.10 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.53 E-value=0.083 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....+|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999854
No 360
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.48 E-value=0.061 Score=57.89 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=31.5
Q ss_pred cccccchhhHHHHHHhhc-------------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIG-------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.+..++.+...+.. ....+-|.++|++|+||||+|+.++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 456766666666555421 01346689999999999999999995
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.47 E-value=0.07 Score=51.63 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 362
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.45 E-value=0.07 Score=55.01 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
++.+||+|.|=|||||||.|..+.- .... ...++.-++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~-~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSI-LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHH-TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHH-CCCeEEEEecCC
Confidence 5789999999999999999987773 2222 233566777653
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.44 E-value=0.038 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|+.|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999984
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.39 E-value=0.065 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 365
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.36 E-value=0.058 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998853
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.34 E-value=0.089 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.....|+|.|++|+||||+|+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 367
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.31 E-value=0.066 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|++|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4567999999999999999998883
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.30 E-value=0.082 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.29 E-value=0.072 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.24 E-value=0.078 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999985
No 371
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.23 E-value=0.074 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++++|++|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.22 E-value=0.073 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.20 E-value=0.12 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.20 E-value=0.084 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999994
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.20 E-value=0.072 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.19 E-value=0.074 Score=54.99 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999984
No 377
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.19 E-value=0.34 Score=50.16 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..+-+++.+-..-.++.|.|.+|+||||+|..++.+... ....++|++.. -+..++...++....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 445555533356679999999999999999999854322 23356566654 556777777766543
No 378
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.19 E-value=0.049 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=16.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
.-.+++|+|+.|+|||||++.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 379
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.19 E-value=0.077 Score=52.37 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.. .+++|+|+.|+|||||.+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 46 8999999999999999999984
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.14 E-value=0.068 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.13 E-value=0.075 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.09 E-value=0.088 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.04 E-value=0.089 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.|.|+.|+||||+|+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.01 E-value=0.085 Score=53.56 Aligned_cols=24 Identities=46% Similarity=0.744 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999998
No 385
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.00 E-value=0.074 Score=56.02 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=30.3
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..+..+...+.. ....-+.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~-~~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD-PGIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC-GGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhC-CCCceEEEECCCCccHHHHHHHHHH
Confidence 3468887654443333322 2233488999999999999999996
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.00 E-value=0.078 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|++|+||||.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.98 E-value=0.088 Score=51.20 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....+|+|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998853
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.96 E-value=0.08 Score=51.35 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 389
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.94 E-value=0.077 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|+|||||.+.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.94 E-value=0.088 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.+..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4567999999999999999999984
No 391
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.91 E-value=0.13 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||++.+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3557899999999999999999984
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.90 E-value=0.089 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++++|+|+.|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999999999985
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.89 E-value=0.12 Score=51.28 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=35.3
Q ss_pred HHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003330 195 VKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 195 l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+-++|... ..-.++.|.|++|+||||||..++... ... ...++|++.... ..++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~-~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG--LKM-GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH--HHT-TCCEEEEESSSC--HHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH--Hhc-CCeEEEEEccCC--HHHHHHH
Confidence 44444332 355789999999999999998887422 111 335667776543 3444433
No 394
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.85 E-value=0.17 Score=54.56 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
...++|.++|.+|+||||+|..++. ........++..++...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCC
Confidence 3578999999999999999999884 33322123565666653
No 395
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.80 E-value=0.14 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|++|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999984
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.80 E-value=0.1 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 003330 205 LSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
..+|+|.|+.|+||||+|+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 397
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.78 E-value=0.09 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999984
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.78 E-value=0.12 Score=65.46 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=56.5
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC---C
Q 003330 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS---M 267 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---~ 267 (829)
..+.++|. .. ...++|.|+|++|+|||+||.++... ...+ ..++.|+++.+.++... ++.++.... .
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e--a~~~-G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEEcccccCHHH-----HHHcCCCchhcee
Confidence 34555554 22 46789999999999999999999852 2222 33566888888777665 223221100 0
Q ss_pred CCCCCcchhhHHHHhh--cCCcEEEEEcCCC
Q 003330 268 EPNYVIPHWNLQIQSK--LGSRCLVVLDDVW 296 (829)
Q Consensus 268 ~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~ 296 (829)
...+..+......+.+ ..+.-+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 0111112222222222 4677899999995
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.71 E-value=0.074 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-.+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.66 E-value=0.14 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 202 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.....+++|+|+.|+||||+++.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999985
No 401
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.66 E-value=0.39 Score=55.77 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=32.0
Q ss_pred cccccchhhHHHHHHhhcC------------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.|.++.++++.+.+.-. ...+-|.++|++|.|||.+|+++++
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 4456666666666654311 2345688999999999999999995
No 402
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.66 E-value=0.075 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 403
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.65 E-value=0.1 Score=53.55 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
...+|+|+|++|+||||++..++.. .... ..++.++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~-g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDE-GKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHT-TCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhc-CCEEEEEccc
Confidence 5679999999999999999999843 2222 3356555543
No 404
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.62 E-value=0.15 Score=47.44 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003330 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
+.|+|.+|+||||+|.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999999984
No 405
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.60 E-value=0.11 Score=50.85 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003330 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
.+.+++.+. ..-.+++|.|++|+|||||++.++.... . -...++|+...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~-~~~~v~~~~~~ 60 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--R-DGDPCIYVTTE 60 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--H-HTCCEEEEESS
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--H-CCCeEEEEEcc
Confidence 344444322 3457899999999999999999984322 1 12345566554
No 406
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.59 E-value=0.1 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3557999999999999999999985
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.55 E-value=0.09 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|+|||||.+.++.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999984
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.54 E-value=0.097 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.54 E-value=0.095 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 410
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.45 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|.|.|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999999984
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.43 E-value=0.11 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999985
No 412
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.42 E-value=0.11 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999984
No 413
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.34 E-value=0.1 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999984
No 414
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.31 E-value=0.48 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.+.|.|.+|.||||++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3899999999999999999885
No 415
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.29 E-value=0.1 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999984
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.25 E-value=0.087 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 417
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.22 E-value=0.11 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4567999999999999999999984
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.19 E-value=0.11 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 419
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.17 E-value=1.1 Score=47.94 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC-CCCCCCcchhhHHHH
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS-MEPNYVIPHWNLQIQ 281 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~-~~~~~~~~~~~~~~~ 281 (829)
...++..|.|.+|.||||+.++.++. . ....+ .... ....++-+.+..... .........+...+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~-~~lVl-TpT~----~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------E-EDLIL-VPGR----QAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------T-TCEEE-ESCH----HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------C-CeEEE-eCCH----HHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 56789999999999999999998841 1 22122 2222 223344444432111 111223333443332
Q ss_pred hhcCC----cEEEEEcCCC--ChHhHHHhhhcCCCceEEEEeeccc
Q 003330 282 SKLGS----RCLVVLDDVW--SLAVLEQLIFRVPGCKTLVVSRFKF 321 (829)
Q Consensus 282 ~~~~~----~~LlVlDdv~--~~~~~~~l~~~~~gs~iivTtR~~~ 321 (829)
.-... --+||+|++. +...+..+....+..++|+..-...
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTS
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCccc
Confidence 21111 3479999986 4456666655555567666554443
No 420
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.16 E-value=0.13 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.14 E-value=0.11 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 422
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.14 E-value=0.11 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999984
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.12 E-value=0.11 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.12 E-value=0.11 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999995
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.10 E-value=0.13 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||.+.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999984
No 426
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.09 E-value=0.11 Score=51.57 Aligned_cols=24 Identities=46% Similarity=0.637 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 427
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.08 E-value=0.11 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.06 E-value=0.12 Score=55.85 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|+|.+|+||||+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999885
No 429
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.04 E-value=0.31 Score=53.28 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=44.0
Q ss_pred ccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003330 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
|.......+.+++.+-..-.++.|.|.+|+||||||..++.+.... -...++|++... +..++...++.
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHHH
Confidence 3333445566666322566799999999999999999998532222 122466776553 44566666554
No 430
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.02 E-value=0.17 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 5678999999999999999999984
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.94 E-value=0.22 Score=48.73 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999953
No 432
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.93 E-value=0.15 Score=50.48 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..-.++.|.|.+|+||||+|..++.+...+ ....+++++.. .....+...+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS--SCHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc--CCHHHHHHHH
Confidence 456799999999999999999876322222 22245566655 3455555444
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.91 E-value=0.13 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....|.|.|+.|+||||+|+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 434
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.89 E-value=0.13 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4557999999999999999999984
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.83 E-value=0.13 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3557999999999999999999984
No 436
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.81 E-value=0.12 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 205 LSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 437
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.81 E-value=0.14 Score=52.98 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
...++|+|+|++|+||||++..++.- ... -..++.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~-~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY--YAE-LGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH--HHH-TTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHH-CCCeEEEEeCC
Confidence 35689999999999999999998842 222 23456555543
No 438
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.79 E-value=0.13 Score=51.57 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999995
No 439
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.76 E-value=0.13 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999984
No 440
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.72 E-value=0.12 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|.|||||.+.++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999984
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.66 E-value=0.13 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-+.|.|.|++|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999984
No 442
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.61 E-value=1.1 Score=47.17 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=30.5
Q ss_pred cccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|....+.++.+.+..- ..-..|.|.|.+|.||+++|+.+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 3567666666666655321 2233466999999999999999985
No 443
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.61 E-value=0.21 Score=49.61 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-+..++... .....|.++|++|.|||.+|.++++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3466666644 3456799999999999999999995
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.58 E-value=0.12 Score=48.47 Aligned_cols=21 Identities=48% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-|+|+|.+|+|||||...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999985
No 445
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.57 E-value=0.13 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|+.|+|||||.+.++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999984
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.56 E-value=0.16 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..|+++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.56 E-value=0.085 Score=53.77 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999884
No 448
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.54 E-value=0.15 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4567999999999999999999884
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.54 E-value=0.13 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999984
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.53 E-value=0.14 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||.+.++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4557999999999999999999984
No 451
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.52 E-value=0.13 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|+|||||.+.++.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999999984
No 452
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.50 E-value=0.31 Score=52.92 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=45.2
Q ss_pred ccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhh
Q 003330 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (829)
|.......+-+++.+-..-.++.|.|.+|+||||+|..++.+.... ...++|++... +..++...++...
T Consensus 179 gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 179 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp SBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred CcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC--CHHHHHHHHHHHH
Confidence 4444456666666422566799999999999999999998543222 34566666553 4445555555443
No 453
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.47 E-value=0.21 Score=51.42 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
...++|+|+|-||+||||+|..++. ..... ..++..++....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~-G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSIL-GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHT-TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHC-CCeEEEEeCCCC
Confidence 4678999999999999999998884 33322 336667777643
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.39 E-value=0.22 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 202 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.....+|+|+|.+|+|||||+..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999999999874
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.33 E-value=0.15 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.29 E-value=0.23 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++++|+|++|.|||||++.++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5667999999999999999999995
No 457
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.28 E-value=0.13 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.++.|+|++|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.27 E-value=0.48 Score=45.19 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
.-.+..++|.-|.||||.|.....+...++ . +++.+..... .+.-...+.+.++........... ...++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~--kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAK-Q--HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C--CEEEEECC-------------------CCEEECSSG---GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-C--EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCH---HHHHHHH
Confidence 446889999999999999988875433322 2 3333332211 111112233333211110000111 1222222
Q ss_pred cCCcEEEEEcCCCC--hHhHHHhhh-cCCCceEEEEeeccc
Q 003330 284 LGSRCLVVLDDVWS--LAVLEQLIF-RVPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ~~~~~LlVlDdv~~--~~~~~~l~~-~~~gs~iivTtR~~~ 321 (829)
.++--+|++|.+.- .++++.+.. .-.|..||+|.++..
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccc
Confidence 33334999999873 455544433 224889999998654
No 459
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.24 E-value=0.15 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.18 E-value=0.17 Score=50.60 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999984
No 461
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.15 E-value=0.18 Score=57.46 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=33.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhc
Confidence 35688877777766666532 5889999999999999999985
No 462
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.09 E-value=0.14 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999984
No 463
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.07 E-value=0.87 Score=44.54 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHh
Q 003330 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
++++..+.. -+.+.|.|+.|.||||+.....
T Consensus 67 ~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 344454542 3688999999999998766554
No 464
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.82 E-value=0.18 Score=51.50 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
..++++|+|.+|+||||++..++.- .... ..++.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~-~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGK-GRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHT-TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEecCC
Confidence 4578999999999999999999853 2222 3456565543
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.77 E-value=0.26 Score=45.63 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 466
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.72 E-value=0.19 Score=47.18 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 467
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.71 E-value=0.81 Score=49.46 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHH-HHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHHhhcCCCC---CC
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLAL-EVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDS---ME 268 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~-~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~---~~ 268 (829)
+.++.+..-..-.-++|.|.+|+|||+||. .+.|.. .-+..++++-+++.. ++.++.+.+...=..... ..
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 456666544556778999999999999964 677532 223334567777654 455666666542110000 00
Q ss_pred CCCCcchhh--------HHHHhh--cCCcEEEEEcCCCC
Q 003330 269 PNYVIPHWN--------LQIQSK--LGSRCLVVLDDVWS 297 (829)
Q Consensus 269 ~~~~~~~~~--------~~~~~~--~~~~~LlVlDdv~~ 297 (829)
..+.....+ ..-+.. .++.+||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111111111 111112 68999999999863
No 468
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.71 E-value=0.26 Score=51.12 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=33.8
Q ss_pred HhhcCCC-ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHH
Q 003330 198 MVIGRDD-LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (829)
Q Consensus 198 ~L~~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (829)
++...++ ..++...|-||+||||+|..++. ..... ..++..++....++...
T Consensus 6 ~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~--~lA~~-G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 6 LFKFNKGKTTFVFIGGKGGVGKTTISAATAL--WMARS-GKKTLVISTDPAHSLSD 58 (324)
T ss_dssp GCCCBTTBCEEEEEEESTTSSHHHHHHHHHH--HHHHT-TCCEEEEECCSSCCHHH
T ss_pred hhcCCCCCeEEEEEeCCCCchHHHHHHHHHH--HHHHC-CCcEEEEeCCCCcCHHH
Confidence 3433344 45667779999999999998884 33333 34666777765555544
No 469
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.67 E-value=0.5 Score=45.04 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=29.3
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003330 206 SVLGIC-GIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 206 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
++|+|+ +-||+||||+|..+.. .... -..++..++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~-~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSR-SGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHH-TTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHH-CCCeEEEEECCCCCCHH
Confidence 578888 6788999999999884 2322 23356677776554443
No 470
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.65 E-value=0.17 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003330 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999984
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.64 E-value=0.17 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999995
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.62 E-value=0.15 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4567999999999999999999984
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.60 E-value=0.2 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999884
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.59 E-value=0.17 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 475
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.56 E-value=1 Score=48.54 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHH-HHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHHhhcCCCC---CC
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLA-LEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDS---ME 268 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~---~~ 268 (829)
+.++.|..-..-.-++|.|..|+|||+|| ..+.|. .+-+..++++-+++.. ++.++.+.+.+.=..... ..
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 45666654455667899999999999997 466652 2233345577777654 455666665442100000 00
Q ss_pred CCCCcchhh-----------HHHHhhcCCcEEEEEcCCCC
Q 003330 269 PNYVIPHWN-----------LQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 269 ~~~~~~~~~-----------~~~~~~~~~~~LlVlDdv~~ 297 (829)
..+.....+ ..++ -+++.+||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfr-d~G~dVLli~Dsltr 265 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFR-DRGEDALIIYDDLSK 265 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH-HTTCEEEEEEETHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHH-hcCCCEEEEecChHH
Confidence 111111111 1111 278999999999864
No 476
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.55 E-value=0.17 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 56899999999999999999994
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.35 E-value=0.19 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 478
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.35 E-value=0.4 Score=50.07 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=33.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCCCCCHH
Q 003330 202 RDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 202 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~ 251 (829)
....+++.+.|-||+||||+|..++. .... .-..++..++.....+..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCChH
Confidence 45668999999999999999999884 3331 234467677776444433
No 479
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.29 E-value=0.28 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....|+++|.+|+|||||...+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 334588999999999999999985
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.25 E-value=0.19 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999864
No 481
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.19 E-value=0.29 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....|.|-|+.|+||||+++.+++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999995
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.14 E-value=0.21 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|+.|.|||||.+.++.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4567999999999999999999985
No 483
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.14 E-value=0.54 Score=52.12 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003330 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..+-+++.+-..-.++.|.|.+|+||||||..++.+ +.......+.|++... +..++...++....
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 345555532256679999999999999999999853 3222233566776654 45677777665543
No 484
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.12 E-value=0.24 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 485
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.12 E-value=0.3 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003330 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999884
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.07 E-value=0.22 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003330 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|+|.|+.|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999985
No 487
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.07 E-value=0.53 Score=41.20 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=27.2
Q ss_pred EEEeccccccc--cchhhccCCCCCCEEecccCCcCCcccc-cccCCCCCCEEeccCCc
Q 003330 696 NLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCV 751 (829)
Q Consensus 696 ~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 751 (829)
.++.+++. ++ .+|..+. ++|++|+|++|. +..+|. .|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555532 44 5554332 356666666643 334443 34556666666666653
No 488
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.00 E-value=0.2 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|+++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.90 E-value=0.21 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 003330 206 SVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~ 226 (829)
.+.+|+|+.|.|||||+.+++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999987
No 490
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.87 E-value=0.29 Score=52.24 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc--------cccCCeEEEEEeCCC-CCHHHHHHHHHH
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------SYFNNRILFLTVSQS-PNVEQLRAKVWG 259 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~~~~~wv~v~~~-~~~~~l~~~i~~ 259 (829)
+.++.|..-..-.-++|.|.+|+|||+|+..+++..... ++=+..++++-+++. .++.++.+++..
T Consensus 136 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 456666543445667899999999999999999754431 111113446666654 445566666543
No 491
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.82 E-value=0.22 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003330 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
--|+++|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 492
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.75 E-value=0.36 Score=48.45 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003330 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
++|+|.|-||+||||+|..+.. ..... ..++..++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~-G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAM-GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTT-TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHC-CCcEEEEcCCC
Confidence 5788899999999999998884 33222 33566777653
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.73 E-value=0.35 Score=49.17 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003330 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
.++|+|.|-||+||||+|..+.. ..... ..++..++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~-G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEM-GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHC-CCeEEEEecCCC
Confidence 46888899999999999998884 33222 335667777543
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.72 E-value=0.2 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003330 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-|+++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999875
No 495
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.68 E-value=0.28 Score=52.39 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCCC-CCHHHHHHHHHH
Q 003330 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQS-PNVEQLRAKVWG 259 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~-~~~~~l~~~i~~ 259 (829)
+.++.|..-..-.-++|.|.+|+|||+|+..+.+.....+ +=+..++++-+++. .++.++.+++..
T Consensus 140 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 140 SAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 4566665334445578999999999999999997544321 11123445666644 455666666544
No 496
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.68 E-value=0.27 Score=46.36 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003330 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999864
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.52 E-value=0.24 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 498
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.50 E-value=0.24 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 003330 207 VLGICGIGGSGKTTLALEVCRDH 229 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~ 229 (829)
-|+++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.48 E-value=0.24 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
-|+|+|.+|+|||||...+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 500
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.45 E-value=0.29 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003330 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
Done!