BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003331
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 31/305 (10%)
Query: 47 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKP--DE 103
++N YG TE + T LP ++ S+PIG PISN + +L E ++P
Sbjct: 749 LINCYGPTEGTVFATAHVVHDLPD-----SISSLPIGKPISNASVYILNEQSQLQPFGAV 803
Query: 104 GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 163
GE+ G+ +S GY + + ++++ + +T +RTGD AR + G +
Sbjct: 804 GELCISGMGVSKGYVNRADLTKEKFIE---------NPFKPGETLYRTGDLARWLPDGTI 854
Query: 164 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT 223
+ GR D +KI G R+ LEEIE L+ +P V D VV+ +H+ + A++V
Sbjct: 855 EYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV-----N 909
Query: 224 SSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDAD 283
+++ +K+ + +LP M+P F F+D LP+T++GKV+ L ++ +
Sbjct: 910 RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGP 969
Query: 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSI----AAAHVAHNLGIDM--RLI 337
+++ + I + + L +++ HD+FF +GG+++ AA+ + LGID+ +L+
Sbjct: 970 R---NEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLL 1026
Query: 338 YNFPT 342
+ PT
Sbjct: 1027 FEAPT 1031
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 21/254 (8%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
++K + GEVLP + + + FP +I+N YG TE + T +L+ K
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTE--EVLDQ--YK 317
Query: 79 SVPIGLPISNCDIVLVESD-TVKPD--EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
S+P+G S+C +++++ D T+ PD +GEI G +S GY + +
Sbjct: 318 SLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMID--- 374
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
G + Y +TGD A +++G L + GR D IK++G RM LEEIEH LR V
Sbjct: 375 --------GERAY-KTGD-AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDS 254
+V K + L+A +V E E L+S IK ++ +LP MIP +F++ S
Sbjct: 425 EGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSS 484
Query: 255 LPMTSSGKVDYASL 268
+PMT +GKVD L
Sbjct: 485 IPMTPNGKVDRKKL 498
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 21/254 (8%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
++K + GEVLP + + + FP +I+N YG TE + T +L+ K
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTE--EVLDQ--YK 317
Query: 79 SVPIGLPISNCDIVLVESD-TVKPD--EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
S+P+G S+C +++++ D T+ PD +GEI G +S GY + +
Sbjct: 318 SLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMID--- 374
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
G + Y +TGD A +++G L + GR D IK++G RM LEEIEH LR V
Sbjct: 375 --------GERAY-KTGD-AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDS 254
+V K + L+A +V E E L+S IK ++ +LP MIP +F++ S
Sbjct: 425 EGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSS 484
Query: 255 LPMTSSGKVDYASL 268
+PMT +GKVD L
Sbjct: 485 IPMTPNGKVDRKKL 498
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 27/280 (9%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
S++ L+ +G S+ ++K ++ +N YG TE + T + + +
Sbjct: 294 SIQTLITAGSATSPSL---VNKWKEKVTYINAYGPTETTICATTWVATK------ETIGH 344
Query: 79 SVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
SVPIG PI N I +V+ + +K + GE+ GG L+ GY+ ++V
Sbjct: 345 SVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFV------ 398
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
+ G + Y +TGD AR + G++ +LGR D +KI G R+ LEE+E L H +
Sbjct: 399 --DNPFVPGEKLY-KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 455
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+TAV HK E L A+ V + I L ++ + S +LP MIP+ F+ +D +
Sbjct: 456 SETAVSVHKDHQEQPYLCAYFV-----SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKM 510
Query: 256 PMTSSGKVDYASL-SASTSFTISAQHDADETKASDLLQVI 294
P+TS+GK+D L +F + ++A + + L I
Sbjct: 511 PLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTI 550
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)
Query: 27 GEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI 86
GEVLP+S+ + + FP I N YG TE + T + ++ S +S+P+G
Sbjct: 269 GEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN--DVISRS--ESLPVGFAK 324
Query: 87 SNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSC 143
+ +I +++ + + ++GEI G +S GY E + S
Sbjct: 325 PDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFF------------SH 372
Query: 144 GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSH 203
Q +RTGD A IQ G + GR D IK++G RM LEEIE +R V V+ +
Sbjct: 373 EGQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPY 431
Query: 204 KHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
+ G + L+A IV +E + E L+S IK +++ LP MIP +F++ D + MT++GK
Sbjct: 432 QPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGK 491
Query: 263 VD 264
+D
Sbjct: 492 ID 493
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 43 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 102
P + + N YG E G T+ + + ++PIG+P++ +++ D +KP
Sbjct: 351 PALRLGNGYGPAESMGFTTHHAV-----VAGDLSGTALPIGVPLAGKRAYVLDDD-LKPA 404
Query: 103 E----GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158
GE+Y G L++GY S +V + G + +RTGD ARR
Sbjct: 405 ANGALGELYVAGAGLAHGYVSRPALTAERFV-------ADPFAGPGGERMYRTGDLARRR 457
Query: 159 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVL 218
G L ++GR D +KI G R+ E+E L GHP V AV++ + LVA++V
Sbjct: 458 ADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA 517
Query: 219 KEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273
+ + + ++ V+ LP M+P V +D LP T +GK+D +L+ S S
Sbjct: 518 ERADAPPDA--AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSGS 570
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 39/314 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
L+ L+ G++L + P + ++N YG TE T F C + + ++
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN----TTFTCCHVVTDDDLEE- 330
Query: 78 KSVPIGLPISNCDIVLVE---SDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL-H 132
+PIG I+ ++L++ + +PD GEI A G L+ GY +++ + +V+L +
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+ +RTGD AR + G L F+GR D +K+NG R+ L +E R
Sbjct: 391 RGRLLRA---------YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQ 441
Query: 193 PDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
P ++D A++ + G +L A+ + S + L + +W P+ V +
Sbjct: 442 PGILDCALLVRERNGVKQLLCAWT--GKADASPQALLRQLPTWQR--------PHACVRV 491
Query: 253 DSLPMTSSGKVDYASLSASTSFTI---SAQHDADETKASDLLQVIRKAFGHALMVEEVLH 309
++LP+T+ GK+D A+L + ++ D D+ + L + L E
Sbjct: 492 EALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQL-------WSELLGCEVGAA 544
Query: 310 HDNFFTMGGNSIAA 323
+FF GGNS+ A
Sbjct: 545 DQDFFLCGGNSLLA 558
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 26/259 (10%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM-STL 77
+L GE L +S + + FP+ I+N YG TE + + + R EM
Sbjct: 265 ALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITR-----EMVDNY 319
Query: 78 KSVPIGLPISNCDIVLVESDTVK---PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
+PIG P + +++ D + ++GEI G +S GY + +
Sbjct: 320 TRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLN------------NPE 367
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ Q + TGD + L++ GR D IK G R+ LE++ L P
Sbjct: 368 KTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPM 427
Query: 195 VVDT-AVVSHKHQGELVILVAFIVLKE---KKTSSEIFLS-SIKSWVSSKLPLAMIPNRF 249
V AV + + ++ L+A+IV+K+ ++ E+ L+ +IK+ V + M+P++F
Sbjct: 428 VASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKF 487
Query: 250 VFMDSLPMTSSGKVDYASL 268
++ DSLP+T +GK+D +L
Sbjct: 488 LYRDSLPLTPNGKIDIKTL 506
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 28/247 (11%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
++++ +GE LP + + + F IL+ GSTE+ F R ++ +T +
Sbjct: 301 AIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM---LHIFLSNRAGAVEYGTTGR 356
Query: 79 SVPIGLPISNCDIVLVESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
VP G I D E+ PD G++Y G PS V NN
Sbjct: 357 PVP-GYEIELRD----EAGHAVPDGEVGDLYIKG--------------PSAAVMYWNNRE 397
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 196
+ + G + R+GD R+ +G V+ GR D +K++GQ ++ E+E L H V+
Sbjct: 398 KSRATFLGE--WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVL 455
Query: 197 DTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLP 256
+ AVV H G LV AF+VLK + SEI +K++V +L P VF+D LP
Sbjct: 456 EAAVVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLP 514
Query: 257 MTSSGKV 263
T++GK+
Sbjct: 515 KTATGKI 521
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L +GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV+ ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SGK+
Sbjct: 596 LHWTDSLPKTRSGKI 610
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL++L GE + W+ K +++ + TE G F LP +E
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----FMITPLPGAIE-- 431
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
LK+ P LV+++ P EG G L +++ + ++ + ++ +
Sbjct: 432 -LKAGSATRPFFGVQPALVDNEG-HPQEGAT-EGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 136 ICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
QTYF T GD ARR + G GR D + ++G R+ EIE
Sbjct: 486 ----------QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP + + AVV H + + A++ L + S + +++WV ++ P+
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 249 FVFMDSLPMTSSGKV 263
+ DSLP T SG +
Sbjct: 596 LHWTDSLPKTRSGAI 610
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Query: 84 LPISNCDIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVS 142
LP +V + V P E GE++ G L+ GY ++ ++ +
Sbjct: 357 LPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGE---- 412
Query: 143 CGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS 202
S Y+RTGD + G + GR D IK+ G R+ L +IE +R H DVVD V
Sbjct: 413 --SVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTV 470
Query: 203 HKHQ-GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSG 261
+ + G+L ++ A++ + T++ + IK+ LP M P R++ + LP T +G
Sbjct: 471 REFKPGDLRLVCAYVAREGSATTARELRNHIKTL----LPAYMHPARYLPLPGLPRTVNG 526
Query: 262 KVDYASLSAS 271
KVD A+++ S
Sbjct: 527 KVDRAAVARS 536
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
Q +H P +L+ ++L G L +M I + L N+ I N +G TE C+ F L +
Sbjct: 267 QQGLHEPYNLQKILLGGAKLSATM--IETALQYNLPIYNSFGMTET---CSQF----LTA 317
Query: 71 ILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVK 130
EM + +G+P +N D+ + + K GE+ G + NGY P++
Sbjct: 318 TPEMLHARPDTVGMPSANVDVKIKNPN--KEGHGELMIKGANVMNGYL-----YPTDLTG 370
Query: 131 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR 190
N YF TGD A G ++ R+ I G+ + +IE +
Sbjct: 371 TFENG------------YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK 418
Query: 191 GHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250
P + D V H + + V + S+I + + +++S L +P F
Sbjct: 419 QFPGISDAVCVGHPDDTWGQVPKLYFV-----SESDISKAQLIAYLSKHLAKYKVPKHFE 473
Query: 251 FMDSLPMTSSGKVDYASL 268
+D+LP TS+GK+ L
Sbjct: 474 KVDTLPYTSTGKLQRNKL 491
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 34/261 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS-- 75
SS++++ L + D ++ FPN + YG TE +L MS
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG------------PVLAMSLG 391
Query: 76 ------TLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYV 129
+KS G + N ++ +V+ DT G LS E + +
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVDPDT-----------GDSLSRNQPGEICIRGHQIM 440
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
K + N+ + + + TGD +L + R IK G ++A E+E L
Sbjct: 441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 500
Query: 190 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
GHPD+ D AVV+ K + + VAF+V K SE+ +K +VS ++ N+
Sbjct: 501 IGHPDITDVAVVAMKEEAAGEVPVAFVV---KSKDSELSEDDVKQFVSKQVVFYKRINKV 557
Query: 250 VFMDSLPMTSSGKVDYASLSA 270
F +S+P SGK+ L A
Sbjct: 558 FFTESIPKAPSGKILRKDLRA 578
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 28/198 (14%)
Query: 83 GLPISNCDIVLVESD---TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 138
G P+S D V D VKP E G + G GY+ + HN
Sbjct: 354 GKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK---------AEEHN----- 399
Query: 139 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+ S ++RTGD R + G +V GR I G+++A EE+E+ L HP V D
Sbjct: 400 -AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA 458
Query: 199 AVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSL 255
A+VS Q GE + FI+ +++ + + +K+++ + L IP+R F++S
Sbjct: 459 AMVSMPDQFLGERSCV--FIIPRDEAPKA----AELKAFLRERGLAAYKIPDRVEFVESF 512
Query: 256 PMTSSGKVDYASLSASTS 273
P T GKV +L + S
Sbjct: 513 PQTGVGKVSKKALREAIS 530
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 23/253 (9%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SLKLL + G P S+ + ++ N + ++G E + T D S ++ T
Sbjct: 307 QSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLD----DSDEQIFTT 361
Query: 78 KSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 137
+ PI S+ +I +V+ + EGEI G+ + G ++ + S HN+ +
Sbjct: 362 QGRPIS---SDDEIKIVDEQYREVPEGEI---GMLATRGPYTFCGYYQSPE---HNSQVF 412
Query: 138 NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 197
+ Y+ +GD +R G+L +GR I G+++A EEIE + HP+V+
Sbjct: 413 D------EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMH 466
Query: 198 TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257
A+V+ + AFIV + + + + + ++ L P++ ++SLP+
Sbjct: 467 AALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKL---PDQIKLIESLPL 523
Query: 258 TSSGKVDYASLSA 270
T+ GKVD L +
Sbjct: 524 TAVGKVDKKQLRS 536
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 83 GLPISNCDIVLVESD---TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 138
G P S D V D VKP E G + G GY+ + HN
Sbjct: 354 GKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK---------AEEHN----- 399
Query: 139 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+ S ++RTGD R + G +V GR I G+++A EE+E+ L HP V D
Sbjct: 400 -AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA 458
Query: 199 AVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSL 255
A VS Q GE + FI+ +++ + + +K+++ + L IP+R F++S
Sbjct: 459 AXVSXPDQFLGERSCV--FIIPRDEAPKA----AELKAFLRERGLAAYKIPDRVEFVESF 512
Query: 256 PMTSSGKVDYASLSASTS 273
P T GKV +L + S
Sbjct: 513 PQTGVGKVSKKALREAIS 530
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 24/254 (9%)
Query: 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE---VSGDCTYFDCKRLP 69
+ H SSL+++ G L + D + FP + YG TE V C F
Sbjct: 292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF------ 345
Query: 70 SILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYV 129
E +K G + N ++ +V+ +T G L E + +
Sbjct: 346 -AKEPFDIKPGACGTVVRNAEMKIVDPET-----------GASLPRNQPGEICIRGDQIM 393
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
K + N S + + + TGD +L + R IK G ++A E+E L
Sbjct: 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 453
Query: 190 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
HP++ D AVV K + + VAF+V EK ++E IK ++S ++ R
Sbjct: 454 IAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATE---DEIKQYISKQVIFYKRIKRV 510
Query: 250 VFMDSLPMTSSGKV 263
F++++P SGK+
Sbjct: 511 FFIEAIPKAPSGKI 524
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 34/238 (14%)
Query: 45 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV--PIGLPISNCDIVLVESDTVKPD 102
++++N+YG TEV+ C+ IL S + + P+G +++ K
Sbjct: 320 VALVNVYGPTEVTIGCS------AGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGX 373
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
GE+ G ++NGY + + C+ + + +RTGD R
Sbjct: 374 AGELVIEGSLVANGYLN----------RPDAKGFCDIN----GRKXYRTGDIVRXDADSS 419
Query: 163 LVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQG-ELVILVAFIVLKE 220
++FLGRKD +K+ GQR+ L E+ +R P +D + H G LV+F+
Sbjct: 420 ILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479
Query: 221 KKTSSEI---------FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT-SSGKVDYASL 268
E+ +S++ LP +P+ + + +P+ +S K D +L
Sbjct: 480 AAVRGELRWINENYKEINNSLRQACEQTLPAYXVPDFIIPISFIPLRDTSAKTDAKAL 537
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY-FDCKRLPSILE 73
H +L+ LV+ G P S+ ++ + + YG TE S F L S+ E
Sbjct: 290 HRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347
Query: 74 MSTLK-SVPIGLPISNCDIVLV--ESDTVKPDE---GEIYAGGLCLSNGYFSESTFMPSE 127
L GLPI + + E V D GE+ G ++ GY+
Sbjct: 348 EEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG-------- 399
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
N +++ +FRTGD A + G + R IK G+ ++ ++E+
Sbjct: 400 -----NEEATRSALT--PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 188 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLK-EKKTSSEIFLSSIKSWVSSKLPLAMIP 246
L GHP V + AVV+ H +A +V + EK T E+ +K+ + +P
Sbjct: 453 ALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAK----WQLP 508
Query: 247 NRFVFMDSLPMTSSGK 262
+ +VF + +P TS+GK
Sbjct: 509 DAYVFAEEIPRTSAGK 524
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
++ GD + + G F+GR D I +G R+ E+E+ L HP VV+TAV+S
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 208 ELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 265
++ AF+VL + S E ++ V S P + F+ +LP T +GK+
Sbjct: 494 RGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQR 553
Query: 266 ASL 268
A L
Sbjct: 554 AKL 556
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 26/250 (10%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
S+LK V++GE L +++ + F I ++ +G TE + +I +
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTET-----------VVTIATFPWM 388
Query: 78 KSVP--IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL--HN 133
+ P IG P I L++ D + GE G + ++ M + V L H
Sbjct: 389 EPKPGSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINT--------MEGKPVGLFVHY 438
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
+ Y+ TGD A + G L F+GR D IK +G ++ E+E L HP
Sbjct: 439 GKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498
Query: 194 DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
V++ A+ ++ A IVL + T S+ + ++ V + P F+
Sbjct: 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVP 558
Query: 254 SLPMTSSGKV 263
LP T SGK+
Sbjct: 559 ELPKTISGKI 568
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
++ GD + + G F+GR D I +G R+ E+E+ L HP VV+TAV+S
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 208 ELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 265
++ AF+VL + S E ++ V S P + F+ +LP T +GK+
Sbjct: 494 RGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQR 553
Query: 266 ASL 268
A L
Sbjct: 554 AKL 556
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 46 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 102
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 220
+ LGR + G + EIE + P VV++AV V H GE V AF+VL
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAFVVLXR 449
Query: 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+ SEI + ++V +L +P +F+D LP + G V
Sbjct: 450 EFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAV 492
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 27/275 (9%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIIS-KLFPN-ISILNLYGSTEVSG 58
+R++ A S H SL+ L GE + +W+ S K+ N I I++ Y TE
Sbjct: 367 LRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 426
Query: 59 DCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGY- 117
P ++ +K P D V+++ +T + G L + +
Sbjct: 427 HLV------TPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP 480
Query: 118 -FSESTFMPSE-YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175
F+ + + + Y+ + N Y+ TGD A + + G + LGR D + +
Sbjct: 481 SFARTIWKNHDRYLDTYLNPYPG---------YYFTGDGAAKDKDGYIWILGRVDDVVNV 531
Query: 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK---KTSSEIFLSSI 232
+G R++ EIE + P V + AVV + AF+VLK K T+++ L I
Sbjct: 532 SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDI 591
Query: 233 KS----WVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
K V + P + +D LP T SGK+
Sbjct: 592 KKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKI 626
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 111/273 (40%), Gaps = 30/273 (10%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF------PNISILNLYGST 54
+ V++ L+S + + S LK+ + ++ + + KL P + ++G T
Sbjct: 279 LNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXT 338
Query: 55 EVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGG 110
E C + + + KS G+P S+ ++ ++ + + + GEI G
Sbjct: 339 EA--------CPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRG 390
Query: 111 LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170
+ GY+ + N C G + +FRTGD + G L F R
Sbjct: 391 PNIFKGYWK----------REKENQECWWYDEKGRK-FFRTGDVGFIDEEGFLHFQDRVK 439
Query: 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLS 230
IK G +A E+E L H V D AV+ + + AFIVLK + ++
Sbjct: 440 EVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLK-PEYRGKVDEE 498
Query: 231 SIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
I WV ++ F++ LP T+SGK+
Sbjct: 499 DIIEWVRERISGYKRVREVEFVEELPRTASGKL 531
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 83 GLPISNCDIVLVESDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 141
G P+ D V V P +GE+ G ++ G ++ + S HN S + +
Sbjct: 358 GYPMCPDDEVWVADAEGNPLPQGEV---GRLMTRGPYTFRGYYKSPQ---HNASAFDAN- 410
Query: 142 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 201
++ +GD G + GR+ I G+++A EEIE+ L HP V+ A+V
Sbjct: 411 -----GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465
Query: 202 SHKHQGELVILVAFIVLKEKKTSSEI--FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTS 259
S + + A++V+KE + ++ FL + KL P+R +DSLP+T+
Sbjct: 466 SMEDELMGEKSCAYLVVKEPLRAVQVRRFLRE-QGIAEFKL-----PDRVECVDSLPLTA 519
Query: 260 SGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGN 319
GKVD L + SA + + L +VI + +E DN G +
Sbjct: 520 VGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLDES---DEPFDDDNLIDYGLD 576
Query: 320 SI 321
S+
Sbjct: 577 SV 578
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 40/237 (16%)
Query: 43 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 102
PN + +G +E SG T+ + P KS L +V E + P
Sbjct: 294 PNATFWATFGQSETSGLSTFAPYRDRP--------KSAGRPLFWRTVAVVDAEDRPLPPG 345
Query: 103 E-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR-----TGDFAR 156
E GEI G + GY+ NN+ +Q FR TGD R
Sbjct: 346 EVGEIVLRGPTVFKGYW--------------NNA-------AATQHAFRNGWHHTGDMGR 384
Query: 157 RIQSGDLVFLGR--KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 214
G L + GR + IK G+ + E+E L+ HP + D V+ + A
Sbjct: 385 FDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444
Query: 215 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 271
V K ++ I ++ +V+S + P VF+++LP + G +D A++ +
Sbjct: 445 VCVCKPGES---IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTA 498
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 43 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 102
P + + N YG E G T+ + + ++PIG+P++ +++ D +KP
Sbjct: 351 PALRLGNGYGPAESMGFTTHHAV-----VAGDLSGTALPIGVPLAGKRAYVLDDD-LKPA 404
Query: 103 E----GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158
GE+Y G L++GY S +V + G + +RTGD ARR
Sbjct: 405 ANGALGELYVAGAGLAHGYVSRPALTAERFV-------ADPFAGPGGERMYRTGDLARRR 457
Query: 159 QSGDLVFLGRKD 170
G L ++GR D
Sbjct: 458 ADGVLEYVGRAD 469
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 82 IGLPISNCDIVLVESDTVK------PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
+G+P+ ++ LVE D GEI G L Y N
Sbjct: 326 VGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYL---------------NR 370
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT-IKINGQRMALEEIEHTLRGHPD 194
+ + +FRTGD A R G + +GRK IK G ++ EIE+ L HP+
Sbjct: 371 PDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430
Query: 195 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
V + AV +VA+IV + L ++ V+++L P ++D+
Sbjct: 431 VREAAVTGEPDPDLGERIVAWIVPADPAAPP--ALGTLADHVAARLAPHKRPRVVRYLDA 488
Query: 255 LPMTSSGKV 263
+P GK+
Sbjct: 489 VPRNDMGKI 497
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 124/310 (40%), Gaps = 53/310 (17%)
Query: 466 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC----- 520
W+ + + +D+SP++ K+ IYL S+K + A SV W K IEC
Sbjct: 13 WEFLIGNSIDSSPILA-KNGTIYL---GSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG 68
Query: 521 ---------------------------SAAVLADFSQ----VVVGCYKGKIYFLDYLTGD 549
A+++DF+ + V G +Y ++ G
Sbjct: 69 KDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSXDGHLYAIN-TDGT 127
Query: 550 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 609
W F+T + P+V + I+ GS+D+ LYA++ + ++ +I + +I
Sbjct: 128 EKWRFKTKKAIYATPIV-SEDGTIYVGSNDNYLYAIN-PDGTEKWRFKTNDAITSAASIG 185
Query: 610 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 669
+ + + + + + F+ + + PA S + + +DGH+
Sbjct: 186 KDGTIYFGSDKVYAINPDGTEKWNFYAGYW-TVTRPAI------SEDGTIYVTSLDGHLY 238
Query: 670 ALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729
A++ G+ WR +TG I + P + S +G +Y+ + G W + G
Sbjct: 239 AINPDGTEKWRFKTGKRIESSPV--IGNTDTIYFGSYDGHLYAINPD-GTEKWNFETGSW 295
Query: 730 ITASAYIDEH 739
I A+ IDE+
Sbjct: 296 IIATPVIDEN 305
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 13/197 (6%)
Query: 550 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 609
I W F + P++ A I+ GS + NLYA++ + + G I P+I
Sbjct: 11 IKWEFLIGNSIDSSPIL-AKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG 68
Query: 610 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 669
+ + + S ++ AI+ W + + + I +V DGH+
Sbjct: 69 KDGTIYF---GSDKVYAINPDGTE---KWRFDTKKAIVSDFTIFEDILYVTSX--DGHLY 120
Query: 670 ALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729
A+++ G+ WR +T I+A P S + + S + +Y+ + G W + D
Sbjct: 121 AINTDGTEKWRFKTKKAIYATPIVS--EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDA 177
Query: 730 ITASAYIDEHLQLKLES 746
IT++A I + + S
Sbjct: 178 ITSAASIGKDGTIYFGS 194
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/349 (19%), Positives = 129/349 (36%), Gaps = 76/349 (21%)
Query: 508 VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 567
+ WE + I+ S+ +LA + +G +Y ++ G + W F++ ++C+P +
Sbjct: 11 IKWEFLIGNSID-SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI- 67
Query: 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAI 627
I+ GS +YA++ + ++ +I I E D+LYV S G L AI
Sbjct: 68 GKDGTIYFGSD--KVYAIN-PDGTEKWRFDTKKAIVSDFTIFE--DILYVTSXDGHLYAI 122
Query: 628 SVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTG--- 684
+ W + + +A+ I S + + D ++ A++ G+ WR +T
Sbjct: 123 NTDGTE---KWRFKTKKAIYAT-PIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAI 178
Query: 685 ---------GPIFAGPCTSFAL------------------------PSQVLICSRNGSIY 711
G I+ G +A+ + + S +G +Y
Sbjct: 179 TSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238
Query: 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771
+ + G W + G ++ES I I S H+ +N D
Sbjct: 239 AINPD-GTEKWRFKTGK--------------RIESSPVIGNTDTIYFGSYDGHLYAINPD 283
Query: 772 VTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCI 819
T K N E I ++PV+ G ++ G R+ Y +
Sbjct: 284 GTEKWN------------FETGSWIIATPVIDENGTIYFGTRNGKFYAL 320
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 33/223 (14%)
Query: 46 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 102
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGXTETNXNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGKELPRGD 346
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
G I G + GY+ SE+ +F TGD + + G
Sbjct: 347 IGXIEVKGPNVFKGYWRXPEKTKSEFR---------------DDGFFITGDLGKIDERGY 391
Query: 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 220
+ LGR + G + +EIE + P VV++AV V H GE V V V+++
Sbjct: 392 VHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV---VVRD 448
Query: 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
K + I + + + +L P + +F+D LP + GKV
Sbjct: 449 K--GATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKV 489
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 33/223 (14%)
Query: 46 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 102
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 220
+ LGR + G + EIE + P VV++AV V H GE V AF+VL
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAFVVLXR 449
Query: 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+ SE + + + +L +P +F+D LP + G V
Sbjct: 450 EFAPSE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+FRTGD G L R I G+ + EIE + G P V + AV+ +
Sbjct: 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYAS 267
I A +V + + S + I + ++L +P + +F +++P +GK+
Sbjct: 451 WGEIAAAIVVADQNEVSEQ----QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTV 506
Query: 268 LSASTSFTI 276
L S T+
Sbjct: 507 LREQYSATV 515
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 33/223 (14%)
Query: 46 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 102
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 220
+ LGR + G + EIE + P VV++AV V H GE V A +V
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAVVVRDX 449
Query: 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
T E + + + +L +P +F+D LP + G V
Sbjct: 450 GATIDE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+ +GD A + + R IK G ++A E+E L HP++ D V
Sbjct: 417 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 476
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 264
+ A +VL+ KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 477 AGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 531
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+ +GD A + + R IK G ++A E+E L HP++ D V
Sbjct: 422 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 481
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 264
+ A +VL+ KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 482 AGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 536
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+ +GD A + + R IK G ++A E+E L HP++ D V
Sbjct: 417 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 476
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 264
+ A +VL+ KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 477 AGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 531
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 96 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 153
Query: 580 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 154 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ--GQ 210
Query: 636 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 211 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 268
Query: 686 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744
G F + +++ + +N + + + G LW S + L L
Sbjct: 269 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 312
Query: 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 804
S + + + + S G +H + V +D K++ G + PV
Sbjct: 313 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 360
Query: 805 GRVFVGCRDDYIYCI 819
G++ + +D +Y I
Sbjct: 361 GKLLIQAKDGTVYSI 375
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 112 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 169
Query: 580 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 170 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 226
Query: 636 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 227 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 284
Query: 686 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744
G F + +++ + +N + + + G LW S + L L
Sbjct: 285 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 328
Query: 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 804
S + + + + S G +H + V +D K++ G + PV
Sbjct: 329 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 376
Query: 805 GRVFVGCRDDYIYCI 819
G++ + +D +Y I
Sbjct: 377 GKLLIQAKDGTVYSI 391
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 87 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 144
Query: 580 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 145 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 201
Query: 636 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 202 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 259
Query: 686 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744
G F + +++ + +N + + + G LW S + L L
Sbjct: 260 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 303
Query: 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 804
S + + + + S G +H + V +D K++ G + PV
Sbjct: 304 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 351
Query: 805 GRVFVGCRDDYIYCI 819
G++ + +D +Y I
Sbjct: 352 GKLLIQAKDGTVYSI 366
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 90 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 147
Query: 580 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 148 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 204
Query: 636 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 205 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 262
Query: 686 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744
G F + +++ + +N + + + G LW S + L L
Sbjct: 263 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 306
Query: 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 804
S + + + + S G +H + V +D K++ G + PV
Sbjct: 307 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 354
Query: 805 GRVFVGCRDDYIYCI 819
G++ + +D +Y I
Sbjct: 355 GKLLIQAKDGTVYSI 369
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 95 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 152
Query: 580 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 153 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 209
Query: 636 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 267
Query: 686 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744
G F + +++ + +N + + + G LW S + L L
Sbjct: 268 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 311
Query: 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 804
S + + + + S G +H + V +D K++ G + PV
Sbjct: 312 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 359
Query: 805 GRVFVGCRDDYIYCI 819
G++ + +D +Y I
Sbjct: 360 GKLLIQAKDGTVYSI 374
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+ +GD A + + R IK G ++A E+E L HP++ D V
Sbjct: 422 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDD 481
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 264
+ A +VL+ KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 482 AGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 536
>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup I222
pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P212121
Length = 376
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 115/314 (36%), Gaps = 48/314 (15%)
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 95 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 152
Query: 580 HNLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636
L AL+ + + + S+ G A V +GR++A+ +
Sbjct: 153 GQLQALNEADGAVKWTVNLDXPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLXE--QGQX 210
Query: 637 LWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 686
+W + E+ + + T N V +G++ ALD SG I W+
Sbjct: 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIXWKREL--- 267
Query: 687 IFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745
G F + +++ + +N + + + G LW S + L L
Sbjct: 268 ---GSVNDFIVDGNRIYLVDQNDRVXALTIDGGVTLWTQS------------DLLHRLLT 312
Query: 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGG 805
S + + + + S G +H + V +D K++ G + PV G
Sbjct: 313 SPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAADG 360
Query: 806 RVFVGCRDDYIYCI 819
++ + +D +Y I
Sbjct: 361 KLLIQAKDGTVYSI 374
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKH 205
+ +GD A + G + R IK G ++ E+E L HP + D V +
Sbjct: 452 WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPD 511
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 264
GEL A +VL+E KT +E + +V+ ++ + + F+D +P +GK+D
Sbjct: 512 AGELP--AAVVVLEEGKTMTE---QEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKID 566
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 76
SL+ + +G +P ++ + + + P + N+YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG- 379
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++RT D A G + LGR D I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 256 PMTSSGKV 263
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 474 VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE-----IKLEGRIECSAAVLADF 528
++A+PL D ++ + I DA LW K++ R C AV
Sbjct: 58 LEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGV 113
Query: 529 S----QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI----------- 573
+ +V VG G++ LD TG W+ QT K + APR +
Sbjct: 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE 173
Query: 574 -----WCGSHDHNLYALDFRNYRC------------------------VYKLPCGGSIFG 604
+ ++D + L +R Y +KL GG+++
Sbjct: 174 YGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWD 233
Query: 605 SPAIDEVHDVLYVASTSG 622
S A D D+LYV + +G
Sbjct: 234 SMAYDPELDLLYVGTGNG 251
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 76
SL+ + +G +P ++ + + + P + N+YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPE---ATAEKLQDG- 379
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++RT D A G + LGR D I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 256 PMTSSGKV 263
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 34/250 (13%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCK----RLPSILEM 74
SL+ + +G P ++ + + + P + N+YG+TE K P
Sbjct: 273 SLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFF-- 329
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHN 133
S ++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 330 SEVRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQD 378
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
++RT D A G + LGR D I G+ + EIE L P
Sbjct: 379 G-------------WYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP 425
Query: 194 DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
V + V+ Q + A +V + +T S L + SS+L P R+ +D
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILD 483
Query: 254 SLPMTSSGKV 263
LP + KV
Sbjct: 484 QLPKNALNKV 493
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 76
SL+ + +G +P ++ + + + P + N YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG- 379
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++RT D A G + LGR D I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 256 PMTSSGKV 263
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 76
SL+ + +G +P ++ + + + P + N YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG- 379
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++RT D A G + LGR D I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 256 PMTSSGKV 263
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 76
SL+ + +G +P ++ + + + P + N+YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG- 379
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++RT D A G + LGR I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGV 427
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 256 PMTSSGKV 263
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 203
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 204 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 262
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 263 VD 264
+D
Sbjct: 532 ID 533
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCT 693
+W H+ +P +A + T+ N V DG+ A D+ SG +W+ +TG I + P T
Sbjct: 479 VWEHKEHLPLWAGVLATAGNL-VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPIT 535
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 660 ICCLVDGHVVALDS----SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715
I + D HV +L + SG ++W + P++AG + + V + +G +F+
Sbjct: 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG--NLVFTGTGDGYFKAFDA 514
Query: 716 ESGNLLWEYSVGDPITA 732
+SG LW++ G I +
Sbjct: 515 KSGKELWKFQTGSGIVS 531
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 203
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 204 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 262
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 263 VD 264
+D
Sbjct: 532 ID 533
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 203
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 204 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 262
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 263 VD 264
+D
Sbjct: 532 ID 533
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 287 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLG-----IDMRLIYNFP 341
++++ Q FG L +V D+FF +GGNS+ A V +L I M+ +Y +
Sbjct: 43 SNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYK 102
Query: 342 TPSKL 346
T ++
Sbjct: 103 TVRQI 107
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 677 IIWRCRTGGPIFAG-PCTSFAL--------PSQVLICSRNGSIYSFE 714
IIWR GPI AG P +S + P+Q+++ RNG+I F+
Sbjct: 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 677 IIWRCRTGGPIFAG-PCTSFAL--------PSQVLICSRNGSIYSFE 714
IIWR GPI AG P +S + P+Q+++ RNG+I F+
Sbjct: 170 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 30 LPLSMWDIISKLFPNIS---ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI 86
+P ++ +I F N S I+N+ S + G CT+ C L SIL LKS+ +
Sbjct: 78 IPSTVREIGEFAFENCSKLEIINIPDSVKXIGRCTFSGCYALKSILLPLXLKSIGVE-AF 136
Query: 87 SNCD---IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC 139
CD I + E TV DE A C S Y S +P LHN C
Sbjct: 137 KGCDFKEITIPEGVTVIGDE----AFATCESLEYVS----LPDSXETLHNGLFSGC 184
>pdb|3AMN|A Chain A, E134c-Cellobiose Complex Of Cellulase 12a From Thermotoga
Maritima
pdb|3AMN|B Chain B, E134c-Cellobiose Complex Of Cellulase 12a From Thermotoga
Maritima
pdb|3AMP|A Chain A, E134c-Cellotetraose Complex Of Cellulase 12a From
Thermotoga Maritima
pdb|3AMP|B Chain B, E134c-Cellotetraose Complex Of Cellulase 12a From
Thermotoga Maritima
pdb|3AMQ|A Chain A, E134c-Cellobiose Co-Crystal Of Cellulase 12a From
Thermotoga Maritima
pdb|3AMQ|B Chain B, E134c-Cellobiose Co-Crystal Of Cellulase 12a From
Thermotoga Maritima
pdb|3AMQ|C Chain C, E134c-Cellobiose Co-Crystal Of Cellulase 12a From
Thermotoga Maritima
pdb|3AMQ|D Chain D, E134c-Cellobiose Co-Crystal Of Cellulase 12a From
Thermotoga Maritima
Length = 265
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 378 QFHSGYSRTENHAVVSKRL--KVNSTKYFKPELH---HHKDGLPWNLSSVPMSCSFSRCN 432
+F+ GY ENH +L V+S K F E+ HH+ LP N + M +R
Sbjct: 75 EFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFA---METWLTR-E 130
Query: 433 KVMHEEKIRGNDLCGVNW 450
K E I D+C + W
Sbjct: 131 KYQTEASI--GDVCIMVW 146
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 545 YLTGDIYWTFQTCGEVKCQPVVDAPR-QLIWCGSH---DHNLYALDFR-NYRCVYKLPCG 599
+ G I WT+Q+C + KC+ VV A + S+ DH R ++ V KL C
Sbjct: 150 HTEGGITWTWQSCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLSCD 209
Query: 600 GSIFGSPAIDEV 611
+I P ++++
Sbjct: 210 IAIAAHPEVNDM 221
>pdb|3VHO|A Chain A, Y61-Gg Insertion Mutant Of Tm-Cellulase 12a
pdb|3VHO|B Chain B, Y61-Gg Insertion Mutant Of Tm-Cellulase 12a
pdb|3VHP|A Chain A, The Insertion Mutant Y61gg Of Tm Cel12a
pdb|3VHP|B Chain B, The Insertion Mutant Y61gg Of Tm Cel12a
Length = 266
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 378 QFHSGYSRTENHAVVSKRL--KVNSTKYFKPELH---HHKDGLPWNLS 420
+F+ GY ENH +L V+S K F E+ HH+ LP N +
Sbjct: 76 EFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFA 123
>pdb|3VHN|A Chain A, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|B Chain B, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|C Chain C, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|D Chain D, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|E Chain E, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|F Chain F, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|G Chain G, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
pdb|3VHN|H Chain H, Y61g Mutant Of Cellulase 12a From Thermotoga Maritima
Length = 265
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 378 QFHSGYSRTENHAVVSKRL--KVNSTKYFKPELH---HHKDGLPWNLS 420
+F+ GY ENH +L V+S K F E+ HH+ LP N +
Sbjct: 75 EFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFA 122
>pdb|3AMH|A Chain A, Crystal Structure Of Cellulase 12a From Thermotoga
Maritima
pdb|3AMH|B Chain B, Crystal Structure Of Cellulase 12a From Thermotoga
Maritima
pdb|3AMM|A Chain A, Cellotetraose Complex Of Cellulase 12a From Thermotoga
Maritima
pdb|3AMM|B Chain B, Cellotetraose Complex Of Cellulase 12a From Thermotoga
Maritima
Length = 265
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 378 QFHSGYSRTENHAVVSKRL--KVNSTKYFKPELH---HHKDGLPWNLS 420
+F+ GY ENH +L V+S K F E+ HH+ LP N +
Sbjct: 75 EFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFA 122
>pdb|3O7O|A Chain A, Use Of Synthetic Symmetrization In The Crystallization And
Structure Determination Of Cela From Thermotoga Maritima
pdb|3O7O|B Chain B, Use Of Synthetic Symmetrization In The Crystallization And
Structure Determination Of Cela From Thermotoga Maritima
Length = 264
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 378 QFHSGYSRTENHAVVSKRL--KVNSTKYFKPELH---HHKDGLPWNLS 420
+F+ GY ENH +L V+S K F E+ HH+ LP N +
Sbjct: 68 EFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,403,161
Number of Sequences: 62578
Number of extensions: 1073280
Number of successful extensions: 2415
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2253
Number of HSP's gapped (non-prelim): 108
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)