Query 003331
Match_columns 829
No_of_seqs 775 out of 4389
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 21:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12467 peptide synthase; Pro 100.0 2.3E-51 5E-56 547.5 30.2 414 13-449 3346-3789(3956)
2 PRK10252 entF enterobactin syn 100.0 2.1E-49 4.5E-54 496.5 31.1 400 16-435 715-1149(1296)
3 KOG4649 PQQ (pyrrolo-quinoline 100.0 3.7E-45 8.1E-50 332.1 32.9 352 465-825 2-354 (354)
4 PRK05691 peptide synthase; Val 100.0 1.8E-46 4E-51 505.7 30.7 334 4-353 3966-4311(4334)
5 PRK12467 peptide synthase; Pro 100.0 1.1E-45 2.3E-50 493.4 28.2 324 15-354 1831-2167(3956)
6 TIGR03443 alpha_am_amid L-amin 100.0 7.9E-45 1.7E-49 456.2 29.9 351 4-354 512-921 (1389)
7 PRK06060 acyl-CoA synthetase; 100.0 1.8E-44 3.8E-49 421.2 29.2 314 14-354 256-619 (705)
8 PRK12316 peptide synthase; Pro 100.0 1.9E-44 4.1E-49 489.3 31.3 316 13-354 765-1088(5163)
9 PRK12316 peptide synthase; Pro 100.0 1.4E-44 3E-49 490.7 29.1 311 14-353 3307-3625(5163)
10 PRK05691 peptide synthase; Val 100.0 8.7E-44 1.9E-48 479.8 31.5 326 4-353 1370-1708(4334)
11 KOG1176 Acyl-CoA synthetase [L 100.0 9.1E-40 2E-44 351.5 20.1 235 13-273 294-531 (537)
12 COG0365 Acs Acyl-coenzyme A sy 100.0 4.2E-38 9.1E-43 336.5 19.6 232 13-273 285-521 (528)
13 PLN02654 acetate-CoA ligase 100.0 5.2E-35 1.1E-39 337.4 25.4 240 15-274 394-640 (666)
14 KOG1177 Long chain fatty acid 100.0 1.5E-35 3.2E-40 294.5 17.4 238 14-273 346-586 (596)
15 TIGR03300 assembly_YfgL outer 100.0 4.9E-33 1.1E-37 299.6 38.2 318 459-819 37-376 (377)
16 PTZ00237 acetyl-CoA synthetase 100.0 7.5E-35 1.6E-39 334.9 24.9 236 15-273 377-622 (647)
17 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 9.6E-35 2.1E-39 335.4 25.0 240 15-274 355-602 (625)
18 PRK00174 acetyl-CoA synthetase 100.0 1.3E-34 2.9E-39 334.7 25.6 240 15-274 364-610 (637)
19 COG0318 CaiC Acyl-CoA syntheta 100.0 3.9E-35 8.5E-40 329.3 19.7 232 19-273 292-526 (534)
20 PRK11138 outer membrane biogen 100.0 1.3E-32 2.9E-37 296.7 35.8 320 459-821 41-393 (394)
21 PLN02860 o-succinylbenzoate-Co 100.0 2.6E-34 5.6E-39 327.5 22.1 242 15-273 285-553 (563)
22 TIGR02316 propion_prpE propion 100.0 5.5E-34 1.2E-38 328.4 25.0 242 15-274 351-604 (628)
23 PRK03584 acetoacetyl-CoA synth 100.0 2.2E-33 4.8E-38 325.3 26.5 241 15-274 380-625 (655)
24 PRK07788 acyl-CoA synthetase; 100.0 1.4E-33 3E-38 321.2 22.4 226 15-271 320-548 (549)
25 PRK06334 long chain fatty acid 100.0 1.6E-33 3.4E-38 318.5 22.6 226 15-271 296-532 (539)
26 PLN03051 acyl-activating enzym 100.0 4.7E-33 1E-37 311.9 24.5 242 15-272 233-489 (499)
27 KOG1175 Acyl-CoA synthetase [L 100.0 1.8E-33 3.8E-38 300.7 19.7 241 15-275 356-603 (626)
28 TIGR01217 ac_ac_CoA_syn acetoa 100.0 5E-33 1.1E-37 320.5 24.9 238 15-273 381-625 (652)
29 PRK04319 acetyl-CoA synthetase 100.0 2.1E-33 4.6E-38 320.8 21.2 233 15-272 320-557 (570)
30 PRK07529 AMP-binding domain pr 100.0 4.9E-33 1.1E-37 320.1 24.2 230 15-272 330-568 (632)
31 PLN02574 4-coumarate--CoA liga 100.0 3E-33 6.5E-38 318.6 21.9 234 15-273 316-553 (560)
32 PRK10524 prpE propionyl-CoA sy 100.0 7.8E-33 1.7E-37 319.8 24.2 242 15-274 352-605 (629)
33 PRK07445 O-succinylbenzoic aci 100.0 6.6E-33 1.4E-37 305.2 22.1 221 15-274 227-447 (452)
34 COG1021 EntE Peptide arylation 100.0 7.9E-34 1.7E-38 275.4 12.2 233 13-273 300-537 (542)
35 PRK05677 long-chain-fatty-acid 100.0 8.5E-33 1.8E-37 315.3 21.7 229 16-272 324-555 (562)
36 cd00216 PQQ_DH Dehydrogenases 100.0 1.8E-30 3.8E-35 285.3 35.3 327 459-815 36-459 (488)
37 PRK05851 long-chain-fatty-acid 100.0 1.3E-32 2.9E-37 310.7 18.9 236 14-272 268-520 (525)
38 PRK13382 acyl-CoA synthetase; 100.0 4.1E-32 8.9E-37 307.6 22.2 224 16-270 310-536 (537)
39 PRK06145 acyl-CoA synthetase; 100.0 4.4E-32 9.5E-37 305.7 22.3 232 15-272 261-495 (497)
40 PRK09274 peptide synthase; Pro 100.0 4.5E-32 9.8E-37 309.3 21.6 246 15-273 285-547 (552)
41 PRK13390 acyl-CoA synthetase; 100.0 6.1E-32 1.3E-36 304.4 22.0 232 15-269 267-501 (501)
42 PRK13295 cyclohexanecarboxylat 100.0 1.5E-31 3.2E-36 304.3 24.8 231 15-273 309-543 (547)
43 PLN02246 4-coumarate--CoA liga 100.0 9.3E-32 2E-36 305.4 22.7 236 15-272 295-534 (537)
44 PRK08314 long-chain-fatty-acid 100.0 6.6E-32 1.4E-36 307.9 21.4 234 15-271 302-539 (546)
45 PRK07824 O-succinylbenzoic aci 100.0 1.5E-31 3.3E-36 286.9 22.7 209 15-273 148-356 (358)
46 TIGR01734 D-ala-DACP-lig D-ala 100.0 2.1E-31 4.6E-36 300.6 24.7 242 14-272 254-500 (502)
47 PRK06839 acyl-CoA synthetase; 100.0 1.5E-31 3.3E-36 301.4 22.7 230 15-272 261-493 (496)
48 PRK05857 acyl-CoA synthetase; 100.0 1.6E-31 3.4E-36 303.0 22.7 237 15-273 283-530 (540)
49 PLN02736 long-chain acyl-CoA s 100.0 4.6E-32 9.9E-37 313.5 18.3 231 18-276 376-643 (651)
50 PRK08043 bifunctional acyl-[ac 100.0 1.4E-31 3E-36 312.8 22.4 234 15-273 476-712 (718)
51 PRK12492 long-chain-fatty-acid 100.0 2.2E-31 4.7E-36 303.7 23.4 229 15-271 330-561 (562)
52 PRK05852 acyl-CoA synthetase; 100.0 1.1E-31 2.5E-36 304.4 20.9 234 16-273 293-531 (534)
53 PRK07787 acyl-CoA synthetase; 100.0 2.2E-31 4.9E-36 297.0 22.5 226 15-270 238-469 (471)
54 PLN02330 4-coumarate--CoA liga 100.0 2.1E-31 4.5E-36 302.9 20.9 233 19-273 304-540 (546)
55 PRK10946 entE enterobactin syn 100.0 3.5E-31 7.6E-36 300.1 22.0 231 14-273 296-531 (536)
56 PRK07769 long-chain-fatty-acid 100.0 6.8E-32 1.5E-36 311.8 16.3 256 15-273 303-613 (631)
57 PLN03052 acetate--CoA ligase; 100.0 5.1E-31 1.1E-35 304.6 23.3 241 15-273 468-720 (728)
58 PRK07638 acyl-CoA synthetase; 100.0 3.1E-31 6.7E-36 297.6 20.8 226 17-273 252-480 (487)
59 PRK07470 acyl-CoA synthetase; 100.0 2.1E-31 4.5E-36 302.3 19.5 238 15-273 277-517 (528)
60 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 6.4E-31 1.4E-35 297.8 23.3 227 15-269 296-527 (527)
61 PRK08315 AMP-binding domain pr 100.0 4.5E-31 9.8E-36 301.9 22.1 235 15-273 312-550 (559)
62 PRK09088 acyl-CoA synthetase; 100.0 6.5E-31 1.4E-35 295.2 22.7 232 15-273 249-484 (488)
63 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 9.7E-31 2.1E-35 297.1 24.3 227 15-269 307-537 (538)
64 PRK12583 acyl-CoA synthetase; 100.0 6.7E-31 1.5E-35 300.6 22.6 235 15-273 314-551 (558)
65 PRK07514 malonyl-CoA synthase; 100.0 7.9E-31 1.7E-35 296.1 22.8 232 14-273 265-500 (504)
66 PRK08316 acyl-CoA synthetase; 100.0 5.8E-31 1.2E-35 299.0 21.6 234 15-274 283-519 (523)
67 PRK05605 long-chain-fatty-acid 100.0 7.9E-31 1.7E-35 300.3 21.5 231 15-273 333-568 (573)
68 PRK08633 2-acyl-glycerophospho 100.0 5.9E-31 1.3E-35 327.0 21.5 240 14-272 894-1141(1146)
69 PRK07786 long-chain-fatty-acid 100.0 1.1E-30 2.4E-35 296.6 21.5 233 18-275 290-525 (542)
70 PRK04813 D-alanine--poly(phosp 100.0 3E-30 6.5E-35 291.6 24.5 242 14-272 256-501 (503)
71 PRK05620 long-chain-fatty-acid 100.0 1.4E-30 2.9E-35 298.1 21.9 253 17-274 297-557 (576)
72 PRK07656 long-chain-fatty-acid 100.0 2E-30 4.4E-35 293.8 22.9 232 15-270 278-512 (513)
73 PRK08276 long-chain-fatty-acid 100.0 8.9E-31 1.9E-35 295.2 19.4 233 16-273 260-495 (502)
74 PRK13391 acyl-CoA synthetase; 100.0 1.9E-30 4.1E-35 292.9 22.0 233 16-273 273-508 (511)
75 PRK03640 O-succinylbenzoic aci 100.0 1.3E-30 2.9E-35 292.6 20.4 228 16-273 252-481 (483)
76 PRK06710 long-chain-fatty-acid 100.0 1.7E-30 3.7E-35 296.9 20.3 230 16-273 321-554 (563)
77 PRK06188 acyl-CoA synthetase; 100.0 2.7E-30 5.9E-35 292.8 21.1 235 15-272 278-515 (524)
78 PRK08751 putative long-chain f 100.0 2.7E-30 5.8E-35 295.2 21.1 229 15-271 326-557 (560)
79 PRK07059 Long-chain-fatty-acid 100.0 3.5E-30 7.5E-35 293.9 21.8 229 15-271 324-555 (557)
80 TIGR03098 ligase_PEP_1 acyl-Co 100.0 5.8E-30 1.3E-34 290.1 23.2 241 15-270 271-514 (515)
81 PRK06155 crotonobetaine/carnit 100.0 6.9E-30 1.5E-34 289.5 22.9 225 16-272 292-522 (542)
82 PRK07008 long-chain-fatty-acid 100.0 4.3E-30 9.3E-35 291.5 21.1 236 15-273 290-532 (539)
83 PLN02614 long-chain acyl-CoA s 100.0 1.1E-30 2.4E-35 300.7 16.6 235 18-280 386-655 (666)
84 PRK12406 long-chain-fatty-acid 100.0 9.3E-30 2E-34 287.3 23.3 231 15-273 268-502 (509)
85 PRK12476 putative fatty-acid-- 100.0 2E-30 4.3E-35 298.2 17.8 253 16-273 316-605 (612)
86 PLN02387 long-chain-fatty-acid 100.0 3.8E-30 8.3E-35 297.8 18.8 236 18-277 420-692 (696)
87 PRK09029 O-succinylbenzoic aci 100.0 7E-30 1.5E-34 284.1 19.9 214 17-273 239-452 (458)
88 TIGR02262 benz_CoA_lig benzoat 100.0 1E-29 2.3E-34 286.8 21.3 230 16-271 276-508 (508)
89 PRK08974 long-chain-fatty-acid 100.0 1.6E-29 3.6E-34 288.5 22.6 229 15-272 322-553 (560)
90 PRK08008 caiC putative crotono 100.0 1.8E-29 3.8E-34 285.9 22.5 225 17-269 287-517 (517)
91 PRK13383 acyl-CoA synthetase; 100.0 1.8E-29 3.8E-34 285.2 22.4 223 16-269 290-515 (516)
92 PLN03102 acyl-activating enzym 100.0 1.3E-29 2.9E-34 289.1 21.3 238 16-273 298-553 (579)
93 PRK06087 short chain acyl-CoA 100.0 8.1E-30 1.7E-34 290.4 19.4 234 15-274 299-536 (547)
94 PRK06814 acylglycerophosphoeth 100.0 1.3E-29 2.8E-34 313.3 22.5 229 14-274 903-1132(1140)
95 PLN02861 long-chain-fatty-acid 100.0 4.2E-30 9E-35 296.4 16.7 235 18-280 383-652 (660)
96 PRK06187 long-chain-fatty-acid 100.0 1E-29 2.2E-34 288.9 19.3 237 14-273 277-518 (521)
97 PRK07867 acyl-CoA synthetase; 100.0 2.8E-29 6.1E-34 283.3 22.5 222 17-273 266-506 (529)
98 TIGR03205 pimA dicarboxylate-- 100.0 2.4E-29 5.2E-34 285.9 21.8 228 15-269 309-541 (541)
99 TIGR03300 assembly_YfgL outer 100.0 1E-27 2.2E-32 258.2 33.0 286 504-828 38-344 (377)
100 TIGR01923 menE O-succinylbenzo 100.0 2.5E-29 5.5E-34 278.4 20.3 218 18-268 219-436 (436)
101 PRK11138 outer membrane biogen 100.0 1.2E-27 2.6E-32 258.2 32.0 284 504-828 42-359 (394)
102 PRK06018 putative acyl-CoA syn 100.0 8.3E-29 1.8E-33 281.3 23.7 235 16-273 292-533 (542)
103 PRK13388 acyl-CoA synthetase; 100.0 6.5E-29 1.4E-33 281.4 22.6 223 18-273 265-505 (540)
104 PRK06164 acyl-CoA synthetase; 100.0 9.2E-29 2E-33 281.4 22.1 234 13-273 289-531 (540)
105 PRK07868 acyl-CoA synthetase; 100.0 5.9E-29 1.3E-33 297.2 21.3 222 15-273 717-957 (994)
106 PTZ00216 acyl-CoA synthetase; 100.0 1.7E-29 3.7E-34 293.3 16.0 232 18-278 428-695 (700)
107 PRK08279 long-chain-acyl-CoA s 100.0 1.6E-28 3.5E-33 282.4 23.4 232 17-275 313-565 (600)
108 PTZ00342 acyl-CoA synthetase; 100.0 8.1E-29 1.7E-33 283.9 19.4 229 18-274 461-734 (746)
109 PRK06178 acyl-CoA synthetase; 100.0 1.5E-28 3.3E-33 281.1 21.4 237 15-273 322-564 (567)
110 PRK07798 acyl-CoA synthetase; 100.0 3.5E-28 7.5E-33 277.0 23.6 233 14-273 292-531 (533)
111 PLN02479 acetate-CoA ligase 100.0 1.5E-28 3.3E-33 280.4 20.6 239 16-273 308-557 (567)
112 PRK09192 acyl-CoA synthetase; 100.0 2E-28 4.2E-33 280.2 18.3 239 15-274 296-566 (579)
113 PLN02430 long-chain-fatty-acid 100.0 2E-28 4.4E-33 281.7 17.1 233 18-278 383-650 (660)
114 KOG1178 Non-ribosomal peptide 100.0 1.5E-27 3.4E-32 268.0 21.8 327 17-355 326-670 (1032)
115 PRK08180 feruloyl-CoA synthase 100.0 1.4E-28 3.1E-33 282.7 13.6 234 16-281 332-603 (614)
116 COG1022 FAA1 Long-chain acyl-C 100.0 5.5E-28 1.2E-32 262.5 15.6 166 18-220 353-519 (613)
117 PRK05850 acyl-CoA synthetase; 100.0 1E-27 2.2E-32 274.9 17.8 250 16-273 286-567 (578)
118 PRK08308 acyl-CoA synthetase; 99.9 5.2E-27 1.1E-31 257.0 21.1 197 18-269 212-408 (414)
119 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.9 7.1E-25 1.5E-29 240.5 35.4 323 457-812 42-522 (527)
120 PRK12582 acyl-CoA synthetase; 99.9 3.9E-27 8.4E-32 271.4 17.7 235 16-282 344-615 (624)
121 PRK08162 acyl-CoA synthetase; 99.9 1.6E-26 3.6E-31 263.3 22.0 234 17-272 295-537 (545)
122 KOG1180 Acyl-CoA synthetase [L 99.9 2.1E-27 4.5E-32 240.9 12.2 234 18-276 402-671 (678)
123 cd00216 PQQ_DH Dehydrogenases 99.9 6.6E-25 1.4E-29 241.3 31.4 292 501-828 34-430 (488)
124 KOG1256 Long-chain acyl-CoA sy 99.9 1.1E-26 2.3E-31 247.8 15.8 234 18-279 419-685 (691)
125 PRK07768 long-chain-fatty-acid 99.9 3.1E-26 6.7E-31 260.9 20.3 241 15-273 273-544 (545)
126 TIGR03074 PQQ_membr_DH membran 99.9 1.5E-21 3.2E-26 219.3 37.7 218 456-681 158-485 (764)
127 KOG4649 PQQ (pyrrolo-quinoline 99.9 5.2E-22 1.1E-26 181.7 24.9 288 461-770 42-352 (354)
128 TIGR02372 4_coum_CoA_lig 4-cou 99.9 1.1E-22 2.3E-27 216.2 19.3 195 4-264 190-386 (386)
129 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.9 2.8E-20 6E-25 204.4 32.8 307 501-828 42-496 (527)
130 TIGR01733 AA-adenyl-dom amino 99.9 3.1E-22 6.8E-27 219.7 15.8 175 15-200 231-408 (408)
131 PF13360 PQQ_2: PQQ-like domai 99.9 5.5E-20 1.2E-24 185.2 29.0 220 495-724 2-238 (238)
132 TIGR02155 PA_CoA_ligase phenyl 99.9 8.4E-21 1.8E-25 207.8 19.1 207 17-266 194-418 (422)
133 TIGR03074 PQQ_membr_DH membran 99.8 2.9E-18 6.3E-23 192.9 33.2 222 498-725 156-486 (764)
134 COG1520 FOG: WD40-like repeat 99.8 7.5E-18 1.6E-22 180.2 32.4 286 459-767 40-362 (370)
135 COG1520 FOG: WD40-like repeat 99.8 1.2E-17 2.5E-22 178.7 33.0 311 486-821 22-363 (370)
136 PF13360 PQQ_2: PQQ-like domai 99.8 8.3E-18 1.8E-22 169.3 28.9 217 537-771 2-232 (238)
137 PF00501 AMP-binding: AMP-bind 99.8 1.6E-20 3.5E-25 206.6 8.7 140 15-176 274-417 (417)
138 PRK09188 serine/threonine prot 99.8 6.7E-19 1.5E-23 182.2 15.0 117 145-273 207-327 (365)
139 COG1020 EntF Non-ribosomal pep 99.8 2.3E-18 5E-23 200.1 12.8 153 19-193 486-642 (642)
140 KOG0296 Angio-associated migra 99.7 3.8E-15 8.3E-20 143.5 30.6 307 485-821 75-397 (399)
141 KOG0296 Angio-associated migra 99.7 1.6E-15 3.4E-20 146.1 25.7 289 521-827 69-361 (399)
142 KOG1179 Very long-chain acyl-C 99.7 7.5E-17 1.6E-21 165.6 15.6 243 5-271 342-610 (649)
143 KOG0271 Notchless-like WD40 re 99.7 2.1E-14 4.6E-19 139.0 25.0 272 483-771 124-441 (480)
144 cd00200 WD40 WD40 domain, foun 99.7 1.3E-13 2.8E-18 142.7 31.4 267 485-767 20-289 (289)
145 KOG0316 Conserved WD40 repeat- 99.7 3.7E-14 7.9E-19 128.6 22.4 243 482-730 25-271 (307)
146 KOG0279 G protein beta subunit 99.6 3.6E-13 7.8E-18 125.5 27.2 276 486-769 28-313 (315)
147 TIGR03335 F390_ftsA coenzyme F 99.6 1.5E-14 3.3E-19 158.2 18.8 141 17-196 203-359 (445)
148 KOG0286 G-protein beta subunit 99.6 9.2E-13 2E-17 123.6 27.3 268 485-766 66-342 (343)
149 cd00200 WD40 WD40 domain, foun 99.6 1E-12 2.2E-17 135.9 30.7 272 519-820 12-289 (289)
150 KOG0315 G-protein beta subunit 99.6 8.6E-13 1.9E-17 120.9 25.6 265 489-771 13-290 (311)
151 COG1541 PaaK Coenzyme F390 syn 99.6 3.6E-14 7.7E-19 146.2 18.7 216 5-264 197-429 (438)
152 KOG0316 Conserved WD40 repeat- 99.6 5.1E-13 1.1E-17 121.3 22.3 234 521-771 22-259 (307)
153 KOG0291 WD40-repeat-containing 99.6 3.6E-12 7.7E-17 134.3 29.9 286 483-772 316-615 (893)
154 COG4993 Gcd Glucose dehydrogen 99.6 1E-12 2.2E-17 135.9 25.0 219 454-679 176-494 (773)
155 KOG0285 Pleiotropic regulator 99.6 1.2E-12 2.7E-17 125.8 22.7 278 485-770 162-440 (460)
156 KOG0271 Notchless-like WD40 re 99.5 6.3E-13 1.4E-17 129.0 20.0 287 512-827 111-444 (480)
157 KOG0275 Conserved WD40 repeat- 99.5 9.6E-14 2.1E-18 131.3 12.5 270 483-766 222-506 (508)
158 KOG0274 Cdc4 and related F-box 99.5 8.1E-12 1.8E-16 136.1 28.8 267 485-776 217-489 (537)
159 KOG0282 mRNA splicing factor [ 99.5 3E-13 6.5E-18 135.4 15.1 270 485-767 226-503 (503)
160 KOG0318 WD40 repeat stress pro 99.5 5.7E-11 1.2E-15 120.4 31.0 307 487-828 161-479 (603)
161 KOG0266 WD40 repeat-containing 99.5 1.1E-11 2.3E-16 135.7 28.3 274 480-767 165-452 (456)
162 KOG0291 WD40-repeat-containing 99.5 1.8E-10 3.9E-15 121.7 35.4 276 522-825 271-553 (893)
163 KOG0272 U4/U6 small nuclear ri 99.5 1.3E-12 2.8E-17 128.7 18.1 270 485-767 186-458 (459)
164 KOG0285 Pleiotropic regulator 99.5 4.9E-12 1.1E-16 121.8 21.4 276 521-822 156-439 (460)
165 KOG0286 G-protein beta subunit 99.5 9E-11 2E-15 110.4 28.8 272 521-819 60-342 (343)
166 KOG1446 Histone H3 (Lys4) meth 99.5 1.4E-10 3E-15 110.8 29.9 243 482-727 22-273 (311)
167 KOG0315 G-protein beta subunit 99.4 5E-11 1.1E-15 109.5 23.6 261 464-726 23-298 (311)
168 KOG0282 mRNA splicing factor [ 99.4 1.8E-12 3.9E-17 129.9 15.3 270 527-820 226-503 (503)
169 KOG0279 G protein beta subunit 99.4 2.2E-10 4.7E-15 107.3 27.5 273 527-822 27-313 (315)
170 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 6.6E-10 1.4E-14 116.2 35.1 265 489-771 4-281 (300)
171 PTZ00297 pantothenate kinase; 99.4 5.8E-13 1.3E-17 160.1 12.4 206 18-281 757-1002(1452)
172 KOG0318 WD40 repeat stress pro 99.4 9.1E-10 2E-14 111.9 32.6 306 485-826 201-521 (603)
173 PLN00181 protein SPA1-RELATED; 99.4 3E-10 6.5E-15 134.4 34.6 281 482-768 491-792 (793)
174 KOG0274 Cdc4 and related F-box 99.4 6.8E-11 1.5E-15 128.9 25.7 265 528-827 218-487 (537)
175 KOG0273 Beta-transducin family 99.4 1.2E-10 2.6E-15 116.6 25.0 274 520-822 239-523 (524)
176 KOG0273 Beta-transducin family 99.4 1.2E-10 2.5E-15 116.6 24.8 267 485-769 246-523 (524)
177 KOG2048 WD40 repeat protein [G 99.4 5.4E-10 1.2E-14 117.0 29.5 184 485-672 79-273 (691)
178 KOG0275 Conserved WD40 repeat- 99.4 6E-12 1.3E-16 119.3 12.6 202 480-684 269-478 (508)
179 PLN00181 protein SPA1-RELATED; 99.4 9.6E-10 2.1E-14 130.1 33.8 286 516-821 483-792 (793)
180 KOG0281 Beta-TrCP (transducin 99.3 7.5E-12 1.6E-16 119.9 11.2 275 524-824 203-479 (499)
181 KOG0293 WD40 repeat-containing 99.3 1.1E-10 2.3E-15 114.8 18.7 269 485-769 235-513 (519)
182 KOG1539 WD repeat protein [Gen 99.3 2.4E-09 5.1E-14 114.9 30.1 314 486-826 172-610 (910)
183 KOG0272 U4/U6 small nuclear ri 99.3 1.6E-10 3.4E-15 114.2 19.3 273 520-820 179-458 (459)
184 KOG2106 Uncharacterized conser 99.3 4.4E-09 9.5E-14 106.4 29.5 291 496-823 180-478 (626)
185 KOG1036 Mitotic spindle checkp 99.3 5.6E-10 1.2E-14 106.2 22.0 234 484-725 23-271 (323)
186 KOG1446 Histone H3 (Lys4) meth 99.3 7.6E-09 1.7E-13 99.1 29.5 237 520-771 18-264 (311)
187 KOG0266 WD40 repeat-containing 99.3 9.6E-10 2.1E-14 120.4 27.2 241 521-771 164-411 (456)
188 KOG0647 mRNA export protein (c 99.3 9.6E-10 2.1E-14 104.1 22.3 240 471-721 30-286 (347)
189 KOG0265 U5 snRNP-specific prot 99.3 1.4E-09 3.1E-14 103.0 23.1 266 484-765 57-334 (338)
190 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 6.3E-09 1.4E-13 108.8 31.4 271 530-827 3-284 (300)
191 KOG0319 WD40-repeat-containing 99.3 6.1E-10 1.3E-14 117.7 22.9 309 485-822 73-395 (775)
192 PF13193 AMP-binding_C: AMP-bi 99.2 3.8E-11 8.3E-16 94.3 8.9 70 184-262 1-73 (73)
193 KOG0278 Serine/threonine kinas 99.2 1.6E-10 3.4E-15 106.2 14.0 268 485-772 28-300 (334)
194 COG3292 Predicted periplasmic 99.2 5.6E-10 1.2E-14 115.1 19.0 309 482-826 171-495 (671)
195 KOG0295 WD40 repeat-containing 99.2 8.8E-10 1.9E-14 107.0 18.9 239 522-773 114-368 (406)
196 KOG0281 Beta-TrCP (transducin 99.2 1E-10 2.2E-15 112.3 12.4 273 484-771 205-479 (499)
197 KOG0299 U3 snoRNP-associated p 99.2 1.2E-09 2.7E-14 109.3 20.2 278 519-811 145-444 (479)
198 KOG0319 WD40-repeat-containing 99.2 2.6E-09 5.7E-14 113.0 23.3 315 482-823 27-355 (775)
199 KOG2106 Uncharacterized conser 99.2 5.8E-08 1.2E-12 98.5 31.4 265 484-771 210-479 (626)
200 KOG0293 WD40 repeat-containing 99.2 9E-10 2E-14 108.4 18.0 270 522-822 230-513 (519)
201 KOG0278 Serine/threonine kinas 99.2 1.9E-10 4.1E-15 105.7 12.1 270 526-825 27-300 (334)
202 KOG2048 WD40 repeat protein [G 99.2 1.3E-08 2.9E-13 106.9 27.0 276 519-820 28-317 (691)
203 KOG0646 WD40 repeat protein [G 99.2 1.6E-09 3.4E-14 108.8 19.0 274 538-826 18-311 (476)
204 KOG0276 Vesicle coat complex C 99.2 3.7E-09 8E-14 109.6 21.9 241 472-722 17-263 (794)
205 KOG0295 WD40 repeat-containing 99.2 1.9E-09 4E-14 104.8 18.5 269 485-766 119-403 (406)
206 KOG0292 Vesicle coat complex C 99.2 7.1E-09 1.5E-13 111.7 24.7 269 484-769 19-321 (1202)
207 KOG0299 U3 snoRNP-associated p 99.2 3E-09 6.6E-14 106.5 20.3 232 482-718 150-412 (479)
208 KOG0294 WD40 repeat-containing 99.2 1.3E-08 2.8E-13 97.2 23.1 265 488-771 3-283 (362)
209 PTZ00421 coronin; Provisional 99.2 3.7E-08 8E-13 107.6 30.2 208 515-725 74-299 (493)
210 KOG0310 Conserved WD40 repeat- 99.2 2.7E-09 5.8E-14 107.8 19.2 259 495-769 47-309 (487)
211 PF02239 Cytochrom_D1: Cytochr 99.2 7.4E-08 1.6E-12 101.6 31.2 313 487-828 6-353 (369)
212 KOG0265 U5 snRNP-specific prot 99.2 1.6E-08 3.6E-13 95.9 23.1 244 516-770 47-297 (338)
213 KOG1036 Mitotic spindle checkp 99.1 1.7E-08 3.8E-13 96.2 23.1 241 519-771 16-264 (323)
214 PTZ00420 coronin; Provisional 99.1 3.9E-08 8.4E-13 108.0 29.0 224 493-720 51-297 (568)
215 KOG0301 Phospholipase A2-activ 99.1 6.1E-09 1.3E-13 109.5 20.4 263 525-823 22-289 (745)
216 KOG0643 Translation initiation 99.1 5E-08 1.1E-12 91.1 24.1 204 485-691 21-238 (327)
217 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.4E-07 9.4E-12 93.3 33.5 267 486-771 12-332 (352)
218 KOG0313 Microtubule binding pr 99.1 5.9E-08 1.3E-12 95.1 24.7 265 485-767 114-416 (423)
219 KOG0646 WD40 repeat protein [G 99.1 8.6E-09 1.9E-13 103.6 19.1 275 496-773 18-311 (476)
220 KOG0310 Conserved WD40 repeat- 99.1 8.9E-09 1.9E-13 104.1 19.2 227 485-716 79-309 (487)
221 PTZ00421 coronin; Provisional 99.1 4.6E-08 1E-12 106.8 26.6 196 485-681 87-298 (493)
222 KOG0639 Transducin-like enhanc 99.1 5.9E-09 1.3E-13 105.2 16.9 265 483-766 428-701 (705)
223 COG4993 Gcd Glucose dehydrogen 99.1 2.5E-08 5.5E-13 104.0 21.9 95 504-600 182-302 (773)
224 KOG0276 Vesicle coat complex C 99.1 2.7E-08 5.9E-13 103.4 21.9 236 522-771 19-259 (794)
225 KOG0284 Polyadenylation factor 99.1 2.1E-09 4.6E-14 105.9 13.0 271 484-768 106-379 (464)
226 KOG0308 Conserved WD40 repeat- 99.0 5.8E-09 1.3E-13 108.8 16.1 268 486-769 37-327 (735)
227 KOG0294 WD40 repeat-containing 99.0 9.2E-08 2E-12 91.5 22.6 250 459-718 30-283 (362)
228 PTZ00420 coronin; Provisional 99.0 2.9E-07 6.4E-12 101.2 29.6 222 537-771 53-295 (568)
229 KOG1539 WD repeat protein [Gen 99.0 2.6E-07 5.7E-12 99.6 28.1 278 471-771 205-608 (910)
230 KOG0639 Transducin-like enhanc 99.0 3.3E-09 7.2E-14 107.0 13.0 220 485-710 476-698 (705)
231 KOG2055 WD40 repeat protein [G 99.0 5.5E-08 1.2E-12 97.7 20.8 186 485-672 224-415 (514)
232 KOG0647 mRNA export protein (c 99.0 6.6E-08 1.4E-12 92.0 20.2 240 520-771 31-283 (347)
233 KOG0308 Conserved WD40 repeat- 99.0 3.1E-08 6.6E-13 103.6 19.3 281 486-771 85-395 (735)
234 KOG0301 Phospholipase A2-activ 98.9 2.3E-07 4.9E-12 98.0 23.5 219 485-717 70-289 (745)
235 COG3292 Predicted periplasmic 98.9 2.6E-08 5.7E-13 103.1 16.2 268 521-826 168-450 (671)
236 KOG0288 WD40 repeat protein Ti 98.9 1.3E-08 2.8E-13 100.6 13.5 237 485-727 186-428 (459)
237 KOG1273 WD40 repeat protein [G 98.9 4.2E-07 9E-12 87.0 22.6 238 484-725 33-289 (405)
238 KOG0305 Anaphase promoting com 98.9 1.6E-07 3.6E-12 98.9 21.6 267 486-770 188-462 (484)
239 KOG0306 WD40-repeat-containing 98.9 2.6E-07 5.7E-12 98.3 22.9 259 494-770 392-665 (888)
240 KOG0263 Transcription initiati 98.9 3.5E-08 7.6E-13 105.8 16.4 187 484-672 461-647 (707)
241 KOG2055 WD40 repeat protein [G 98.9 2.2E-07 4.7E-12 93.5 20.4 195 520-717 217-418 (514)
242 KOG0263 Transcription initiati 98.9 5.9E-08 1.3E-12 104.1 17.5 199 514-717 449-650 (707)
243 KOG0306 WD40-repeat-containing 98.9 1.7E-06 3.7E-11 92.3 27.8 144 484-629 75-218 (888)
244 PF02239 Cytochrom_D1: Cytochr 98.9 2.6E-06 5.7E-11 90.0 28.6 290 462-771 26-349 (369)
245 KOG0283 WD40 repeat-containing 98.8 1.5E-07 3.2E-12 102.0 19.0 183 570-769 380-576 (712)
246 KOG0313 Microtubule binding pr 98.8 2E-06 4.4E-11 84.6 24.6 268 528-820 115-416 (423)
247 KOG1407 WD40 repeat protein [F 98.8 1.4E-06 3E-11 81.4 22.1 247 485-738 31-283 (313)
248 TIGR02658 TTQ_MADH_Hv methylam 98.8 8.7E-06 1.9E-10 83.9 30.2 276 528-827 12-335 (352)
249 TIGR02304 aden_form_hyp probab 98.8 1.9E-07 4.2E-12 99.8 18.7 137 18-202 212-365 (430)
250 KOG0305 Anaphase promoting com 98.8 1E-06 2.2E-11 93.0 23.2 263 530-823 190-462 (484)
251 KOG0289 mRNA splicing factor [ 98.8 1.2E-06 2.6E-11 87.6 21.2 232 486-724 231-468 (506)
252 KOG0268 Sof1-like rRNA process 98.8 1.3E-07 2.9E-12 92.1 13.4 261 487-770 80-346 (433)
253 KOG1273 WD40 repeat protein [G 98.8 8.7E-07 1.9E-11 84.9 18.4 193 520-716 27-226 (405)
254 KOG1407 WD40 repeat protein [F 98.7 2.2E-06 4.8E-11 80.1 20.4 202 486-691 77-279 (313)
255 PF06433 Me-amine-dh_H: Methyl 98.7 7.5E-05 1.6E-09 75.0 31.8 255 496-771 17-322 (342)
256 KOG0772 Uncharacterized conser 98.7 2.5E-06 5.5E-11 87.1 21.6 270 483-766 176-484 (641)
257 KOG0270 WD40 repeat-containing 98.7 1.1E-06 2.4E-11 88.2 18.7 233 485-720 191-453 (463)
258 KOG0645 WD40 repeat protein [G 98.7 6.2E-05 1.3E-09 71.1 28.5 262 488-768 29-310 (312)
259 KOG0288 WD40 repeat protein Ti 98.7 3.3E-07 7.2E-12 90.9 14.3 218 460-683 196-427 (459)
260 KOG0643 Translation initiation 98.7 7.1E-06 1.5E-10 77.0 22.2 215 517-734 11-238 (327)
261 KOG2110 Uncharacterized conser 98.7 2.8E-05 6.1E-10 76.6 27.0 224 485-717 16-249 (391)
262 KOG1274 WD40 repeat protein [G 98.7 4.4E-06 9.6E-11 91.5 23.4 228 483-717 22-263 (933)
263 KOG0284 Polyadenylation factor 98.7 2.9E-07 6.3E-12 91.1 12.8 235 520-769 100-337 (464)
264 KOG0289 mRNA splicing factor [ 98.7 5.3E-06 1.1E-10 83.1 21.6 225 529-769 232-462 (506)
265 KOG0292 Vesicle coat complex C 98.7 2.5E-06 5.3E-11 92.8 20.6 235 522-771 15-282 (1202)
266 KOG0283 WD40 repeat-containing 98.6 1.5E-06 3.2E-11 94.5 18.4 184 485-672 379-574 (712)
267 PF00550 PP-binding: Phosphopa 98.6 3.8E-08 8.3E-13 75.9 4.7 59 292-350 1-67 (67)
268 KOG0270 WD40 repeat-containing 98.6 2E-06 4.3E-11 86.4 17.3 145 485-631 255-405 (463)
269 KOG1274 WD40 repeat protein [G 98.6 4.1E-06 8.8E-11 91.8 20.8 236 519-770 16-263 (933)
270 KOG3628 Predicted AMP-binding 98.6 3.5E-07 7.7E-12 101.9 12.7 177 83-272 1156-1349(1363)
271 PRK11028 6-phosphogluconolacto 98.6 0.00012 2.5E-09 77.5 31.6 267 488-769 3-304 (330)
272 KOG1188 WD40 repeat protein [G 98.6 4.6E-06 1E-10 81.1 18.3 188 529-721 41-247 (376)
273 KOG0268 Sof1-like rRNA process 98.6 1.2E-06 2.6E-11 85.6 13.9 257 530-822 81-345 (433)
274 KOG0649 WD40 repeat protein [G 98.6 2.7E-05 5.8E-10 72.2 21.6 226 486-722 22-279 (325)
275 KOG0645 WD40 repeat protein [G 98.5 0.00028 6.1E-09 66.8 27.9 264 528-822 27-311 (312)
276 KOG4328 WD40 protein [Function 98.5 8.9E-06 1.9E-10 82.2 19.3 271 486-768 200-494 (498)
277 KOG0649 WD40 repeat protein [G 98.5 2.4E-05 5.1E-10 72.5 19.9 188 486-680 72-280 (325)
278 KOG0277 Peroxisomal targeting 98.5 1.1E-05 2.4E-10 75.2 17.8 277 473-768 13-308 (311)
279 PF08450 SGL: SMP-30/Gluconola 98.5 0.00016 3.5E-09 72.8 28.3 214 486-706 11-245 (246)
280 KOG2321 WD40 repeat protein [G 98.4 3.3E-05 7.1E-10 80.4 20.9 234 521-771 56-304 (703)
281 PF06433 Me-amine-dh_H: Methyl 98.4 0.00044 9.5E-09 69.6 28.2 239 483-725 44-329 (342)
282 KOG1538 Uncharacterized conser 98.4 2E-05 4.3E-10 83.1 18.6 270 520-825 16-296 (1081)
283 KOG2321 WD40 repeat protein [G 98.4 4.8E-05 1E-09 79.2 21.0 268 482-767 59-341 (703)
284 KOG1408 WD40 repeat protein [F 98.4 6.3E-05 1.4E-09 80.2 21.8 320 485-826 269-675 (1080)
285 PF08450 SGL: SMP-30/Gluconola 98.4 0.00033 7.1E-09 70.5 26.6 197 521-727 4-223 (246)
286 PF10282 Lactonase: Lactonase, 98.4 0.0011 2.5E-08 70.2 31.5 282 530-827 1-329 (345)
287 PRK02889 tolB translocation pr 98.4 0.00025 5.4E-09 77.6 27.2 220 497-726 177-412 (427)
288 KOG4283 Transcription-coupled 98.3 0.00014 3.1E-09 69.4 21.3 269 485-768 55-364 (397)
289 COG4946 Uncharacterized protei 98.3 0.00055 1.2E-08 69.8 26.4 308 485-827 49-436 (668)
290 KOG0640 mRNA cleavage stimulat 98.3 5E-05 1.1E-09 72.9 17.9 268 485-767 123-424 (430)
291 KOG4328 WD40 protein [Function 98.3 0.00012 2.6E-09 74.3 21.2 232 529-771 201-452 (498)
292 PRK11028 6-phosphogluconolacto 98.3 0.00054 1.2E-08 72.4 27.8 232 483-720 43-310 (330)
293 PRK05137 tolB translocation pr 98.3 0.0004 8.8E-09 76.3 27.3 215 497-720 183-416 (435)
294 KOG0277 Peroxisomal targeting 98.3 4.3E-05 9.3E-10 71.4 15.7 229 485-715 72-308 (311)
295 PF10282 Lactonase: Lactonase, 98.3 0.0048 1E-07 65.4 33.8 271 488-769 1-322 (345)
296 KOG1538 Uncharacterized conser 98.2 5.5E-05 1.2E-09 79.9 17.7 279 464-769 5-293 (1081)
297 KOG1188 WD40 repeat protein [G 98.2 0.00013 2.8E-09 71.4 19.0 190 487-677 41-246 (376)
298 KOG0640 mRNA cleavage stimulat 98.2 0.00011 2.4E-09 70.6 17.5 236 521-771 117-385 (430)
299 KOG0321 WD40 repeat-containing 98.2 0.00013 2.9E-09 77.0 19.6 273 485-772 63-394 (720)
300 KOG1408 WD40 repeat protein [F 98.2 0.00042 9.2E-09 74.1 23.0 311 485-823 335-714 (1080)
301 KOG4378 Nuclear protein COP1 [ 98.2 0.0001 2.2E-09 75.3 17.6 187 571-771 92-282 (673)
302 KOG0772 Uncharacterized conser 98.2 4.4E-05 9.5E-10 78.4 14.8 185 486-672 281-485 (641)
303 PRK03629 tolB translocation pr 98.2 0.0018 3.9E-08 70.8 28.8 218 497-724 180-413 (429)
304 KOG1240 Protein kinase contain 98.2 0.00019 4.1E-09 81.6 20.9 249 521-771 1053-1336(1431)
305 KOG0642 Cell-cycle nuclear pro 98.2 2E-05 4.4E-10 81.8 12.4 261 461-769 279-561 (577)
306 COG3386 Gluconolactonase [Carb 98.2 0.00094 2E-08 68.1 24.3 215 487-706 38-275 (307)
307 COG3319 Thioesterase domains o 98.1 4.8E-07 1E-11 88.6 0.3 83 374-456 1-104 (257)
308 PRK04922 tolB translocation pr 98.1 0.001 2.2E-08 73.0 26.2 218 497-724 185-418 (433)
309 KOG0650 WD40 repeat nucleolar 98.1 0.0002 4.3E-09 75.1 17.9 224 523-771 407-639 (733)
310 COG4257 Vgb Streptogramin lyas 98.1 0.0014 2.9E-08 62.7 21.7 232 481-721 67-310 (353)
311 KOG3881 Uncharacterized conser 98.1 0.00018 3.8E-09 71.7 16.6 191 484-678 113-325 (412)
312 PRK01742 tolB translocation pr 98.1 0.002 4.3E-08 70.7 26.8 217 496-725 184-412 (429)
313 PRK04792 tolB translocation pr 98.1 0.0036 7.8E-08 68.8 28.7 219 497-725 199-433 (448)
314 KOG0973 Histone transcription 98.1 0.0011 2.3E-08 75.0 24.2 242 519-775 72-361 (942)
315 COG4257 Vgb Streptogramin lyas 98.1 0.0012 2.5E-08 63.1 20.8 226 523-770 68-306 (353)
316 PRK04922 tolB translocation pr 98.1 0.00091 2E-08 73.4 23.9 179 496-681 228-418 (433)
317 KOG2919 Guanine nucleotide-bin 98.0 0.00033 7.2E-09 68.0 17.2 189 486-676 122-331 (406)
318 TIGR02800 propeller_TolB tol-p 98.0 0.0026 5.6E-08 69.9 27.2 175 497-677 171-358 (417)
319 KOG2919 Guanine nucleotide-bin 98.0 0.0019 4.1E-08 62.9 21.9 183 530-719 125-331 (406)
320 PRK02889 tolB translocation pr 98.0 0.0015 3.4E-08 71.4 24.6 190 486-682 207-411 (427)
321 KOG0321 WD40 repeat-containing 98.0 0.00065 1.4E-08 72.0 19.6 235 529-771 65-349 (720)
322 PRK05137 tolB translocation pr 98.0 0.0037 8E-08 68.8 26.7 175 539-720 183-370 (435)
323 KOG0300 WD40 repeat-containing 98.0 0.00095 2.1E-08 64.5 18.7 263 491-769 165-476 (481)
324 KOG3881 Uncharacterized conser 98.0 0.0008 1.7E-08 67.2 18.7 194 528-725 115-329 (412)
325 PRK04792 tolB translocation pr 98.0 0.0021 4.5E-08 70.7 24.1 179 497-682 243-433 (448)
326 KOG1272 WD40-repeat-containing 97.9 4.5E-05 9.8E-10 77.4 9.7 192 485-682 140-332 (545)
327 PRK00178 tolB translocation pr 97.9 0.0071 1.5E-07 66.6 27.7 211 497-716 180-406 (430)
328 COG2319 FOG: WD40 repeat [Gene 97.9 0.042 9.1E-07 59.9 34.2 263 493-771 131-402 (466)
329 KOG0650 WD40 repeat nucleolar 97.9 0.00063 1.4E-08 71.5 17.3 259 484-768 410-679 (733)
330 PRK03629 tolB translocation pr 97.9 0.007 1.5E-07 66.2 26.8 211 539-769 180-406 (429)
331 KOG4378 Nuclear protein COP1 [ 97.9 0.0003 6.6E-09 72.0 14.5 183 487-672 92-278 (673)
332 KOG0300 WD40 repeat-containing 97.9 0.0012 2.5E-08 63.9 17.5 266 534-824 166-478 (481)
333 KOG0973 Histone transcription 97.9 0.004 8.6E-08 70.6 24.2 151 520-672 17-199 (942)
334 KOG0269 WD40 repeat-containing 97.9 0.00012 2.6E-09 79.0 11.8 147 485-631 99-251 (839)
335 TIGR02800 propeller_TolB tol-p 97.8 0.0041 8.9E-08 68.3 24.4 179 496-681 214-404 (417)
336 PRK01742 tolB translocation pr 97.8 0.0083 1.8E-07 65.8 26.2 207 538-768 184-400 (429)
337 KOG1587 Cytoplasmic dynein int 97.8 0.0043 9.3E-08 68.1 22.9 261 497-770 223-517 (555)
338 COG3386 Gluconolactonase [Carb 97.8 0.007 1.5E-07 61.8 23.0 203 521-733 29-259 (307)
339 KOG1240 Protein kinase contain 97.8 0.0026 5.7E-08 72.8 21.4 235 484-720 1059-1338(1431)
340 PLN02919 haloacid dehalogenase 97.8 0.026 5.6E-07 68.5 31.5 231 485-720 578-892 (1057)
341 COG2319 FOG: WD40 repeat [Gene 97.8 0.046 9.9E-07 59.7 32.0 267 485-769 166-442 (466)
342 PF13570 PQQ_3: PQQ-like domai 97.8 2.9E-05 6.2E-10 52.2 3.8 39 463-505 2-40 (40)
343 PRK00178 tolB translocation pr 97.8 0.0056 1.2E-07 67.4 23.8 175 496-677 223-409 (430)
344 KOG4283 Transcription-coupled 97.8 0.003 6.5E-08 60.7 17.8 226 485-715 113-364 (397)
345 KOG1034 Transcriptional repres 97.7 0.0084 1.8E-07 58.7 20.9 102 530-631 107-212 (385)
346 PF13570 PQQ_3: PQQ-like domai 97.7 7.6E-05 1.6E-09 50.2 5.1 40 548-589 1-40 (40)
347 KOG4547 WD40 repeat-containing 97.7 0.0034 7.3E-08 66.4 19.2 161 488-652 7-192 (541)
348 PF01011 PQQ: PQQ enzyme repea 97.7 6.3E-05 1.4E-09 49.8 4.2 36 529-564 1-36 (38)
349 KOG0303 Actin-binding protein 97.7 0.0073 1.6E-07 60.6 19.7 185 485-672 93-292 (472)
350 KOG0641 WD40 repeat protein [G 97.7 0.028 6.2E-07 51.9 21.9 189 486-678 101-307 (350)
351 KOG1963 WD40 repeat protein [G 97.7 0.023 5E-07 63.2 25.3 271 476-770 19-323 (792)
352 KOG1272 WD40-repeat-containing 97.6 0.00022 4.8E-09 72.5 9.1 186 567-770 138-324 (545)
353 KOG1332 Vesicle coat complex C 97.6 0.0074 1.6E-07 56.7 17.7 221 485-714 22-284 (299)
354 PF14583 Pectate_lyase22: Olig 97.6 0.12 2.5E-06 53.6 28.3 228 486-721 48-333 (386)
355 PF14535 AMP-binding_C_2: AMP- 97.6 0.00038 8.2E-09 57.7 8.6 87 177-265 1-91 (96)
356 PF14727 PHTB1_N: PTHB1 N-term 97.6 0.046 9.9E-07 58.1 25.9 290 464-769 8-360 (418)
357 PF01011 PQQ: PQQ enzyme repea 97.6 0.0002 4.3E-09 47.4 5.4 37 571-607 1-37 (38)
358 KOG1587 Cytoplasmic dynein int 97.6 0.0079 1.7E-07 66.1 20.6 260 539-822 223-516 (555)
359 COG4946 Uncharacterized protei 97.6 0.023 5.1E-07 58.4 21.9 189 475-678 228-436 (668)
360 PLN02919 haloacid dehalogenase 97.6 0.066 1.4E-06 65.1 30.1 247 523-772 574-891 (1057)
361 PRK01029 tolB translocation pr 97.6 0.052 1.1E-06 59.2 26.9 220 497-721 166-408 (428)
362 KOG1332 Vesicle coat complex C 97.5 0.0099 2.1E-07 55.8 17.6 234 523-769 18-286 (299)
363 KOG0267 Microtubule severing p 97.5 0.00021 4.5E-09 76.7 7.7 178 483-662 79-256 (825)
364 KOG1963 WD40 repeat protein [G 97.5 0.14 3E-06 57.2 29.2 190 487-682 172-384 (792)
365 PRK04043 tolB translocation pr 97.5 0.16 3.4E-06 55.2 29.4 153 518-677 189-361 (419)
366 KOG0303 Actin-binding protein 97.5 0.0014 2.9E-08 65.6 11.9 143 486-631 144-295 (472)
367 PRK04043 tolB translocation pr 97.5 0.045 9.7E-07 59.3 24.8 177 496-681 213-407 (419)
368 KOG2110 Uncharacterized conser 97.5 0.034 7.5E-07 55.6 21.3 170 497-672 69-246 (391)
369 KOG1524 WD40 repeat-containing 97.5 0.027 5.8E-07 58.9 21.2 110 486-597 75-185 (737)
370 PF03321 GH3: GH3 auxin-respon 97.4 0.00022 4.7E-09 79.4 6.0 88 149-240 371-467 (528)
371 PRK01029 tolB translocation pr 97.4 0.08 1.7E-06 57.8 25.3 181 538-721 165-364 (428)
372 PF14583 Pectate_lyase22: Olig 97.3 0.052 1.1E-06 56.1 21.7 222 500-726 14-282 (386)
373 KOG2096 WD40 repeat protein [G 97.3 0.066 1.4E-06 52.4 20.8 197 515-716 85-308 (420)
374 KOG0269 WD40 repeat-containing 97.3 0.007 1.5E-07 66.0 15.5 202 466-672 34-248 (839)
375 COG3391 Uncharacterized conser 97.3 0.32 6.9E-06 52.2 28.5 200 521-727 78-294 (381)
376 KOG0307 Vesicle coat complex C 97.3 0.00094 2E-08 75.8 9.2 231 486-719 80-330 (1049)
377 PRK00982 acpP acyl carrier pro 97.3 0.0005 1.1E-08 54.6 5.1 65 289-353 3-76 (78)
378 PF14269 Arylsulfotran_2: Aryl 97.2 0.098 2.1E-06 53.6 22.8 145 537-682 95-297 (299)
379 PF05096 Glu_cyclase_2: Glutam 97.2 0.091 2E-06 51.5 21.1 150 569-726 54-213 (264)
380 KOG0322 G-protein beta subunit 97.2 0.0054 1.2E-07 58.2 12.2 141 573-715 168-322 (323)
381 CHL00124 acpP acyl carrier pro 97.2 0.00052 1.1E-08 55.0 5.0 67 288-354 4-79 (82)
382 PF05096 Glu_cyclase_2: Glutam 97.2 0.069 1.5E-06 52.3 20.3 149 485-641 54-212 (264)
383 COG2706 3-carboxymuconate cycl 97.2 0.29 6.2E-06 49.3 27.0 239 482-721 47-328 (346)
384 KOG1517 Guanine nucleotide bin 97.2 0.077 1.7E-06 60.4 22.9 287 484-826 1074-1385(1387)
385 smart00823 PKS_PP Phosphopante 97.2 0.00071 1.5E-08 54.9 5.9 65 289-353 12-85 (86)
386 KOG1202 Animal-type fatty acid 97.2 0.00015 3.3E-09 81.8 2.2 139 295-435 2010-2198(2376)
387 KOG3628 Predicted AMP-binding 97.2 0.0022 4.7E-08 72.9 11.1 175 88-273 511-703 (1363)
388 PF00975 Thioesterase: Thioest 97.2 5E-05 1.1E-09 75.6 -1.4 76 375-451 2-100 (229)
389 KOG1034 Transcriptional repres 97.2 0.062 1.3E-06 52.9 19.2 100 571-672 106-209 (385)
390 COG3391 Uncharacterized conser 97.2 0.16 3.4E-06 54.5 24.8 194 484-683 83-293 (381)
391 KOG0302 Ribosome Assembly prot 97.2 0.0059 1.3E-07 60.9 12.2 153 471-631 214-379 (440)
392 COG2706 3-carboxymuconate cycl 97.2 0.34 7.4E-06 48.8 27.4 279 530-827 4-328 (346)
393 COG5276 Uncharacterized conser 97.1 0.26 5.6E-06 48.2 22.6 183 569-771 95-287 (370)
394 KOG0267 Microtubule severing p 97.1 0.00062 1.4E-08 73.2 5.7 188 487-676 41-229 (825)
395 PRK09184 acyl carrier protein; 97.1 0.0012 2.5E-08 53.2 5.5 67 288-354 5-87 (89)
396 PHA02713 hypothetical protein; 97.0 0.049 1.1E-06 61.6 20.1 207 497-719 273-536 (557)
397 smart00564 PQQ beta-propeller 97.0 0.0012 2.6E-08 42.1 4.3 28 485-512 5-32 (33)
398 KOG4547 WD40 repeat-containing 97.0 0.02 4.2E-07 60.8 15.4 120 486-607 70-191 (541)
399 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.64 1.4E-05 49.6 29.2 181 612-818 145-356 (418)
400 COG3433 Aryl carrier domain [S 96.9 0.0016 3.4E-08 47.9 4.4 51 304-354 15-70 (74)
401 KOG1912 WD40 repeat protein [G 96.9 0.19 4.1E-06 55.4 21.6 184 486-672 79-302 (1062)
402 TIGR00517 acyl_carrier acyl ca 96.9 0.0018 3.9E-08 51.2 5.1 65 289-353 3-76 (77)
403 KOG2096 WD40 repeat protein [G 96.9 0.2 4.3E-06 49.2 19.5 238 482-722 94-366 (420)
404 PRK05883 acyl carrier protein; 96.9 0.0027 5.8E-08 51.6 6.0 69 286-354 11-88 (91)
405 PRK12449 acyl carrier protein; 96.9 0.0021 4.6E-08 51.2 5.4 66 288-353 4-78 (80)
406 PF05935 Arylsulfotrans: Aryls 96.7 0.18 3.8E-06 55.8 20.8 144 579-728 127-313 (477)
407 KOG0302 Ribosome Assembly prot 96.7 0.084 1.8E-06 53.0 16.0 104 698-823 270-379 (440)
408 PF05935 Arylsulfotrans: Aryls 96.7 0.072 1.6E-06 58.9 17.6 142 495-643 127-312 (477)
409 KOG0642 Cell-cycle nuclear pro 96.7 0.013 2.9E-07 61.6 10.8 209 458-672 330-559 (577)
410 smart00564 PQQ beta-propeller 96.7 0.0036 7.8E-08 39.9 4.4 27 528-554 6-32 (33)
411 PHA02713 hypothetical protein; 96.7 0.12 2.5E-06 58.6 19.2 29 799-827 507-538 (557)
412 COG0823 TolB Periplasmic compo 96.6 0.4 8.7E-06 51.7 22.1 141 538-684 218-368 (425)
413 KOG1524 WD40 repeat-containing 96.6 0.062 1.3E-06 56.3 14.8 150 529-684 76-226 (737)
414 KOG2114 Vacuolar assembly/sort 96.6 0.12 2.7E-06 57.6 17.9 203 522-729 29-256 (933)
415 KOG1009 Chromatin assembly com 96.6 0.94 2E-05 46.3 22.4 114 486-599 26-164 (434)
416 KOG0264 Nucleosome remodeling 96.6 0.29 6.2E-06 50.5 19.2 144 528-672 190-345 (422)
417 KOG0641 WD40 repeat protein [G 96.6 0.1 2.2E-06 48.3 14.5 136 494-630 161-303 (350)
418 KOG1645 RING-finger-containing 96.5 0.24 5.3E-06 50.3 17.9 69 521-589 198-267 (463)
419 PRK05828 acyl carrier protein; 96.5 0.0057 1.2E-07 48.6 5.4 67 288-354 4-79 (84)
420 PRK07081 acyl carrier protein; 96.5 0.0045 9.7E-08 49.4 4.8 64 292-355 3-78 (83)
421 KOG0264 Nucleosome remodeling 96.5 0.052 1.1E-06 55.7 13.4 147 485-631 189-348 (422)
422 PF00780 CNH: CNH domain; Int 96.5 1.2 2.6E-05 45.5 25.0 222 485-727 6-266 (275)
423 KOG3621 WD40 repeat-containing 96.5 0.19 4.2E-06 54.9 18.1 105 485-589 44-155 (726)
424 PRK07117 acyl carrier protein; 96.5 0.0071 1.5E-07 47.5 5.7 66 288-353 4-78 (79)
425 KOG2103 Uncharacterized conser 96.5 0.082 1.8E-06 58.6 15.3 119 466-598 28-147 (910)
426 KOG0280 Uncharacterized conser 96.4 0.051 1.1E-06 52.7 12.1 115 486-600 133-254 (339)
427 KOG2111 Uncharacterized conser 96.4 0.63 1.4E-05 46.0 19.4 171 496-672 75-254 (346)
428 COG3823 Glutamine cyclotransfe 96.4 0.16 3.5E-06 46.9 14.4 152 485-642 54-214 (262)
429 KOG0307 Vesicle coat complex C 96.4 0.02 4.4E-07 65.5 10.5 227 529-771 81-329 (1049)
430 COG3823 Glutamine cyclotransfe 96.3 0.34 7.4E-06 44.9 16.1 140 580-726 68-214 (262)
431 PRK05350 acyl carrier protein; 96.3 0.0078 1.7E-07 48.1 5.2 67 288-354 5-80 (82)
432 KOG1445 Tumor-specific antigen 96.3 0.031 6.8E-07 59.6 10.6 188 485-672 639-842 (1012)
433 KOG4227 WD40 repeat protein [G 96.3 0.34 7.3E-06 48.9 17.1 150 521-672 61-223 (609)
434 KOG4441 Proteins containing BT 96.2 0.46 1E-05 53.7 20.2 213 496-725 301-553 (571)
435 KOG1517 Guanine nucleotide bin 96.2 0.17 3.7E-06 57.8 16.0 211 458-672 1146-1379(1387)
436 KOG0771 Prolactin regulatory e 96.1 0.11 2.5E-06 52.9 13.2 153 482-638 152-317 (398)
437 PF08662 eIF2A: Eukaryotic tra 96.1 0.96 2.1E-05 43.2 19.2 124 530-664 33-163 (194)
438 KOG2111 Uncharacterized conser 96.1 1.8 3.8E-05 43.0 26.1 176 538-717 75-257 (346)
439 PF03178 CPSF_A: CPSF A subuni 96.0 2.4 5.3E-05 44.4 28.2 213 497-715 3-264 (321)
440 KOG0644 Uncharacterized conser 96.0 0.029 6.3E-07 61.9 8.9 105 480-588 196-300 (1113)
441 PF07433 DUF1513: Protein of u 95.9 2.3 4.9E-05 43.0 25.0 225 486-720 17-289 (305)
442 PF14269 Arylsulfotran_2: Aryl 95.9 0.46 1E-05 48.7 16.9 62 495-556 95-183 (299)
443 KOG0974 WD-repeat protein WDR6 95.9 0.53 1.1E-05 53.9 18.2 181 485-672 98-286 (967)
444 PRK07639 acyl carrier protein; 95.8 0.023 5.1E-07 45.6 5.8 67 288-354 4-82 (86)
445 PRK05087 D-alanine--poly(phosp 95.8 0.018 3.9E-07 45.1 4.9 63 290-352 3-76 (78)
446 KOG4714 Nucleoporin [Nuclear s 95.8 0.46 1E-05 45.5 14.7 113 697-820 191-316 (319)
447 COG0236 AcpP Acyl carrier prot 95.8 0.017 3.8E-07 45.8 4.8 65 289-353 5-78 (80)
448 KOG0280 Uncharacterized conser 95.7 0.36 7.8E-06 47.1 14.1 107 651-770 128-242 (339)
449 KOG3621 WD40 repeat-containing 95.7 0.59 1.3E-05 51.3 17.2 110 522-631 39-155 (726)
450 KOG0771 Prolactin regulatory e 95.7 0.15 3.3E-06 52.1 12.0 157 521-679 149-317 (398)
451 PF07433 DUF1513: Protein of u 95.6 3 6.4E-05 42.2 21.1 134 572-706 19-181 (305)
452 KOG1445 Tumor-specific antigen 95.6 0.1 2.2E-06 55.8 10.8 146 485-631 140-294 (1012)
453 KOG4227 WD40 repeat protein [G 95.5 1.2 2.7E-05 45.0 17.4 156 472-631 57-226 (609)
454 PF03178 CPSF_A: CPSF A subuni 95.5 3.9 8.5E-05 42.8 22.9 220 539-768 3-264 (321)
455 PF08662 eIF2A: Eukaryotic tra 95.5 0.84 1.8E-05 43.6 16.1 143 485-640 30-178 (194)
456 PLN02249 indole-3-acetic acid- 95.5 0.2 4.4E-06 56.2 13.4 43 149-191 410-456 (597)
457 PF04443 LuxE: Acyl-protein sy 95.4 0.093 2E-06 55.3 10.1 114 19-179 222-357 (365)
458 PF14870 PSII_BNR: Photosynthe 95.4 3.7 7.9E-05 42.0 21.5 260 521-819 21-301 (302)
459 PF08553 VID27: VID27 cytoplas 95.4 0.27 5.8E-06 56.5 14.2 143 484-630 490-647 (794)
460 KOG2445 Nuclear pore complex c 95.3 2 4.3E-05 42.4 17.6 231 515-769 12-318 (361)
461 KOG1027 Serine/threonine prote 95.3 0.078 1.7E-06 59.4 9.3 188 485-689 26-217 (903)
462 KOG3914 WD repeat protein WDR4 95.3 0.33 7.1E-06 49.5 12.7 155 482-641 70-232 (390)
463 PTZ00171 acyl carrier protein; 95.2 0.035 7.5E-07 49.5 5.3 68 287-354 68-144 (148)
464 PF04841 Vps16_N: Vps16, N-ter 95.2 5.6 0.00012 43.1 27.2 198 475-684 39-257 (410)
465 KOG2103 Uncharacterized conser 95.2 1.1 2.3E-05 50.3 17.1 196 548-771 24-229 (910)
466 KOG1275 PAB-dependent poly(A) 95.2 0.59 1.3E-05 52.8 15.3 181 485-672 146-340 (1118)
467 KOG0322 G-protein beta subunit 95.1 0.13 2.9E-06 49.1 8.9 141 530-672 167-321 (323)
468 PRK08172 putative acyl carrier 95.1 0.043 9.3E-07 43.6 4.8 66 289-354 4-78 (82)
469 KOG3914 WD repeat protein WDR4 95.0 0.33 7.2E-06 49.4 11.8 156 567-727 71-234 (390)
470 PRK02888 nitrous-oxide reducta 95.0 7.8 0.00017 43.3 23.1 222 485-717 140-405 (635)
471 KOG4441 Proteins containing BT 94.9 2 4.3E-05 48.6 19.4 215 580-827 301-551 (571)
472 COG0823 TolB Periplasmic compo 94.9 3.1 6.7E-05 45.1 19.9 139 580-724 218-365 (425)
473 PF14783 BBS2_Mid: Ciliary BBS 94.7 1.2 2.5E-05 37.3 12.4 90 529-624 16-108 (111)
474 PHA03098 kelch-like protein; P 94.7 1.7 3.7E-05 49.4 18.7 168 539-724 312-517 (534)
475 KOG2114 Vacuolar assembly/sort 94.7 2.9 6.3E-05 47.3 19.0 197 483-685 32-255 (933)
476 PHA03098 kelch-like protein; P 94.6 1.7 3.7E-05 49.4 18.4 129 497-640 312-470 (534)
477 PLN02620 indole-3-acetic acid- 94.6 0.74 1.6E-05 51.4 14.4 43 149-191 423-469 (612)
478 PLN02247 indole-3-acetic acid- 94.6 0.27 5.9E-06 54.8 11.2 44 149-192 417-464 (606)
479 KOG1409 Uncharacterized conser 94.5 4.8 0.0001 40.5 18.1 228 485-718 35-272 (404)
480 KOG1645 RING-finger-containing 94.5 1.7 3.6E-05 44.6 15.1 64 569-632 205-268 (463)
481 KOG2139 WD40 repeat protein [G 94.4 2.5 5.5E-05 42.7 15.9 109 562-672 199-309 (445)
482 KOG1027 Serine/threonine prote 94.3 0.24 5.1E-06 55.7 9.8 185 528-731 27-216 (903)
483 PF14783 BBS2_Mid: Ciliary BBS 94.3 2.5 5.4E-05 35.4 13.4 92 485-582 14-108 (111)
484 KOG1334 WD40 repeat protein [G 94.3 0.46 9.9E-06 49.7 11.0 277 481-768 149-465 (559)
485 KOG2695 WD40 repeat protein [G 94.1 0.47 1E-05 47.4 10.2 146 491-641 230-385 (425)
486 KOG1912 WD40 repeat protein [G 93.8 7.3 0.00016 43.7 19.5 231 485-717 25-305 (1062)
487 KOG4532 WD40-like repeat conta 93.8 7 0.00015 38.0 18.9 194 529-723 85-289 (344)
488 KOG1009 Chromatin assembly com 93.8 9.4 0.0002 39.4 20.6 80 479-558 70-165 (434)
489 COG5276 Uncharacterized conser 93.8 7.7 0.00017 38.4 29.3 181 527-717 95-286 (370)
490 KOG2394 WD40 protein DMR-N9 [G 93.7 0.55 1.2E-05 49.7 10.4 75 602-678 292-367 (636)
491 COG4880 Secreted protein conta 93.5 11 0.00024 39.3 26.6 73 484-561 109-182 (603)
492 KOG2695 WD40 repeat protein [G 93.5 0.49 1.1E-05 47.2 9.2 114 485-598 263-386 (425)
493 PF00930 DPPIV_N: Dipeptidyl p 93.5 7.2 0.00016 41.4 19.2 160 498-660 160-343 (353)
494 KOG4190 Uncharacterized conser 93.3 0.29 6.3E-06 51.5 7.8 147 485-637 746-911 (1034)
495 KOG4499 Ca2+-binding protein R 93.3 7.8 0.00017 37.0 19.6 39 695-733 219-258 (310)
496 PF05567 Neisseria_PilC: Neiss 93.2 1.1 2.3E-05 46.9 12.0 52 580-631 181-240 (335)
497 KOG1275 PAB-dependent poly(A) 93.1 1.1 2.5E-05 50.7 12.3 280 462-767 45-340 (1118)
498 PF02897 Peptidase_S9_N: Proly 93.0 16 0.00035 39.8 25.5 221 497-721 151-409 (414)
499 PF00400 WD40: WD domain, G-be 93.0 0.35 7.6E-06 31.8 5.4 39 506-544 1-39 (39)
500 KOG0974 WD-repeat protein WDR6 92.8 2.3 4.9E-05 49.1 14.3 149 524-677 95-249 (967)
No 1
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=2.3e-51 Score=547.54 Aligned_cols=414 Identities=23% Similarity=0.319 Sum_probs=337.7
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||+++++++++|.+.+++++++|.||+||+++.++...+... ........++|+|+++++++
T Consensus 3346 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~ 3421 (3956)
T PRK12467 3346 GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGD----AVCEAPYAPIGRPVAGRSIY 3421 (3956)
T ss_pred cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccc----cccCCCCCCCccccCCCEEE
Confidence 45578899999999999999999999998888999999999999987776544211 01122457899999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.|+.|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||||||+|++++||.|+|+||+
T Consensus 3422 v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~--------~~g~r~yrTGDl~~~~~dG~l~~~GR~ 3493 (3956)
T PRK12467 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFS--------GSGGRLYRTGDLARYRADGVIEYLGRI 3493 (3956)
T ss_pred EECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCC--------CCCceeeccchhheecCCCcEEEeccc
Confidence 998766 457789999999999999999999999999886652 135789999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+|||++|+||+|.|||++|.++|+|.+|+|+..... .+..+++++++..... ...+++++++++.||.||+|..+
T Consensus 3494 d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~-~~~~lva~v~~~~~~~---~~~~~l~~~l~~~Lp~y~vP~~~ 3569 (3956)
T PRK12467 3494 DHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGA-GGKQLVAYVVPADPQG---DWRETLRDHLAASLPDYMVPAQL 3569 (3956)
T ss_pred cceEeeceEeecHHHHHHHHhhCcccceEEEEEecCC-CCcEEEEEEeCCCCCc---ccHHHHHHHHhccCChhhCCCee
Confidence 9999999999999999999999999999999987543 4568999998765422 23468999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHH
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHN 329 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 329 (829)
+.+++||+|++|||||++|++..... ......+.+++|+.++++|+++|+++.|+.+||||++|||||+||+|+.+
T Consensus 3570 ~~l~~lP~t~~GKidR~~L~~~~~~~----~~~~~~p~~~~e~~l~~i~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~ 3645 (3956)
T PRK12467 3570 LVLAAMPLGPNGKVDRKALPDPDAKG----SREYVAPRSEVEQQLAAIWADVLGVEQVGVTDNFFELGGDSLLALQVLSR 3645 (3956)
T ss_pred eeeccCCCCCCCccchhhcCCCCccc----cccccCCCCHHHHHHHHHHHHHhCCCCCCCCcchhcccchHHHHHHHHHH
Confidence 99999999999999999999865432 22334577899999999999999999999999999999999999999876
Q ss_pred c------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhhhhhcccccCCccc
Q 003331 330 L------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKY 403 (829)
Q Consensus 330 l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y 403 (829)
+ .+++..+|++||+++||.++........... ....+....+.+++.|++.+..+.+..+++.+..++++|
T Consensus 3646 l~~~~g~~l~~~~lf~~pti~~la~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~h~~~r~~~~~~~l~~~l~~~~~~~ 3722 (3956)
T PRK12467 3646 IRQSLGLKLSLRDLMSAPTIAELAGYSPLGDVPVNLLL---DLNRLETGFPALFCRHEGLGTVFDYEPLAVILEGDRHVL 3722 (3956)
T ss_pred HHHHhCCCCCHHHHHhCCCHHHHHHHHhhcccccccch---hhhhhhhcccceeeechhhcchhhhHHHHHHhCCCCcEE
Confidence 5 4889999999999999999975332221111 111222222449999999999999999999999999999
Q ss_pred cCCcccccCCCCCc------------------cCCCCCC-eeeecccccee--eccccccccccccc
Q 003331 404 FKPELHHHKDGLPW------------------NLSSVPM-SCSFSRCNKVM--HEEKIRGNDLCGVN 449 (829)
Q Consensus 404 ~~~~~~~~~~~~~~------------------~~~~~~~-~~s~~~~~~~~--~~~~~~~~~~~~~~ 449 (829)
+++..+...++.+. +..||.+ |||+|+..+++ .+++..++.+....
T Consensus 3723 ~l~~~~~~~d~~~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~~~~ 3789 (3956)
T PRK12467 3723 GLTCRHLLDDGWQDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGGTLARLVAELLEREGESEAFLG 3789 (3956)
T ss_pred EEeccccccccCCccchHHHHHHHHHHHHHhccCCCeeeeeeecchHHHHHHHHHHHHcCCceeEEE
Confidence 99887654444321 1228999 99999988866 44555555554433
No 2
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=2.1e-49 Score=496.47 Aligned_cols=400 Identities=23% Similarity=0.332 Sum_probs=320.0
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.|.+.+ +++++|.||+||++..++.+...... ........+++|+|++++.++|+|
T Consensus 715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~--~~~~~~~~~~iG~p~~~~~~~i~d 791 (1296)
T PRK10252 715 SCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEE--LAAVRGSSVPIGYPVWNTGLRILD 791 (1296)
T ss_pred cCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeeccccc--ccccCCCCCCcccccCCCEEEEEC
Confidence 458999999999999999999998876 78999999999998877654432210 000122457899999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.|..|||+|+|+++++||+++|+.|.++|...+.. .+.+||+|||+|+++++|.++|+||.|++
T Consensus 792 ~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ 862 (1296)
T PRK10252 792 ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFA---------PGERMYRTGDVARWLDDGAVEYLGRSDDQ 862 (1296)
T ss_pred CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCC---------CCCEEEecCceEEEcCCCcEEEecccCCe
Confidence 766 456789999999999999999999999999876542 25689999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEee------cCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHK------HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||++|+||+|.|||++|.++|.|.+++|+... .......++++++....... ..++|+++++++||.||+|
T Consensus 863 ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~---~~~~l~~~l~~~Lp~~~~P 939 (1296)
T PRK10252 863 LKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPL---DTSALQAQLRERLPPHMVP 939 (1296)
T ss_pred EEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCC---CHHHHHHHHHhhCchhcCC
Confidence 99999999999999999999999999876542 11222468889887654321 2467999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHH
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l 326 (829)
..++.+++||+|++|||||++|++..... ......+.+++|+.+.++|+++|+.+.++.+++||++|||||+|++|
T Consensus 940 ~~~~~~~~lP~t~~GKidr~~L~~~~~~~----~~~~~~~~~~~e~~l~~~~~~~l~~~~~~~~~~ff~lGg~Sl~a~~l 1015 (1296)
T PRK10252 940 VVLLQLDQLPLSANGKLDRKALPLPELKA----QVPGRAPKTGTETIIAAAFSSLLGCDVVDADADFFALGGHSLLAMKL 1015 (1296)
T ss_pred cEEEEecCCCCCCCcChhHHhcCCCcccc----cccCCCCCCHHHHHHHHHHHHHhCCCCCCCCcCHHHcCCChHHHHHH
Confidence 99999999999999999999998643211 11233566789999999999999999999999999999999999999
Q ss_pred HHHc------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccc-cCcccccccccccCccccchhhhhhcccccC
Q 003331 327 AHNL------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWK-LNLEEDKEHQFHSGYSRTENHAVVSKRLKVN 399 (829)
Q Consensus 327 ~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 399 (829)
..+| .+++.++|++||+++|+++|.+...... ......... ....+++++++|+..|....|..++++|..+
T Consensus 1016 ~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lh~~~g~~~~~~~l~~~l~~~ 1094 (1296)
T PRK10252 1016 AAQLSRQFARQVTPGQVMVASTVAKLATLLDAEEDESR-RLGFGTILPLREGDGPTLFCFHPASGFAWQFSVLSRYLDPQ 1094 (1296)
T ss_pred HHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhccccccc-cccccceeecccCCCCCeEEecCCCCchHHHHHHHHhcCCC
Confidence 8876 3789999999999999999987543211 000000001 1123467999999999999999999999999
Q ss_pred CccccCCcccccCCCCC------------------ccCCCCCC-eeeecccccee
Q 003331 400 STKYFKPELHHHKDGLP------------------WNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 400 ~~~y~~~~~~~~~~~~~------------------~~~~~~~~-~~s~~~~~~~~ 435 (829)
.++|+++.+++.....+ .+..||++ |||+||.++++
T Consensus 1095 ~~v~~~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e 1149 (1296)
T PRK10252 1095 WSIYGIQSPRPDGPMQTATSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQG 1149 (1296)
T ss_pred CcEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHH
Confidence 99999887775321100 01228999 99999998877
No 3
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-45 Score=332.07 Aligned_cols=352 Identities=39% Similarity=0.681 Sum_probs=299.5
Q ss_pred cccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 465 LWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 465 ~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+|++++++|+|++|+|+++|....|++|||++.+.++|+++|+.+|+..++.++++++++..| .+++|++.|.||.++
T Consensus 2 rW~vd~~kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 2 RWAVDLRKCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLC 79 (354)
T ss_pred ceeccchhhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999998654 799999999999999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
.+||...|.+.+.+.++..+.++.+++.||+|++|+++|++|+++...+|+.++++..+.+|+++..++.+|+++..|.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
.+.++++.+...+|......|+|.++... +..+.+++.+|.+.+++..|+++|++.+.++++..|+...-..+.|.++
T Consensus 160 lavt~~~~~~~~~w~~~~~~PiF~splcv--~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 160 LAVTKNPYSSTEFWAATRFGPIFASPLCV--GSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred EEEccCCCCcceehhhhcCCccccCceec--cceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 99999985558999999999999886654 4578888999999999988999999999999999998764334577777
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC-CcEEEEEccCCcEEEEEeecCcccccccccccc
Q 003331 705 SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI-DRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 783 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~ 783 (829)
.++- +++.-+..|.++|..+.+ .....+.++++.+....+..+ +.++...+.||+++++-...... .....+..
T Consensus 238 ~~~C-f~~~~p~~ghL~w~~~~g--~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~--~~~s~~g~ 312 (354)
T KOG4649|consen 238 NENC-FCAPLPIAGHLLWATQSG--TTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLA--EISSNGGE 312 (354)
T ss_pred cCCe-EEEeccccceEEEEecCC--cEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccccc--ccccCCCc
Confidence 7665 555555669999998865 344455555555555555444 66777888999999984432210 01111222
Q ss_pred ceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccccc
Q 003331 784 VQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.+.+...++++++|++|++.+++|++||+|++++|||+++++
T Consensus 313 lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~~ 354 (354)
T KOG4649|consen 313 LQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTWH 354 (354)
T ss_pred cceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccccC
Confidence 355666789999999999999999999999999999998763
No 4
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=1.8e-46 Score=505.69 Aligned_cols=334 Identities=27% Similarity=0.450 Sum_probs=282.4
Q ss_pred cchhhhhcc---CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcc
Q 003331 4 VLPALQSQH---NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV 80 (829)
Q Consensus 4 l~~~l~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (829)
++|++.... ....+++||.+++|||+++++++++|.+.+|+++++|.||+|||+.+++++...... ......
T Consensus 3966 ~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~-----~~~~~~ 4040 (4334)
T PRK05691 3966 SVPSLIQGMLAEDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS-----TRGSYL 4040 (4334)
T ss_pred eCHHHHHHHHhhccccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc-----ccCCcC
Confidence 456554322 234578999999999999999999999998899999999999999888765433211 122457
Q ss_pred ccccccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE
Q 003331 81 PIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 157 (829)
Q Consensus 81 ~~G~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 157 (829)
++|+|++++.++|+|+.. +.|..|||+|+|+++++||+++|+.|+++|+..|.. ..+.+||||||++++
T Consensus 4041 ~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~--------~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691 4041 PIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFG--------APGERLYRTGDLARR 4112 (4334)
T ss_pred CCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCC--------CCCceeeccCcceee
Confidence 899999999999998766 467789999999999999999999999999986653 125789999999999
Q ss_pred ccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHH
Q 003331 158 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS 237 (829)
Q Consensus 158 ~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~ 237 (829)
++||.|+|+||.|+|||++|+||+|.|||++|.++|+|.+|+|+.... ..+..++++++............++|+++++
T Consensus 4113 ~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~ 4191 (4334)
T PRK05691 4113 RSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQGALLERIKQRLR 4191 (4334)
T ss_pred cCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876544 3446789999887655444456678999999
Q ss_pred hcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccC
Q 003331 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMG 317 (829)
Q Consensus 238 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lG 317 (829)
+.||.||+|..++.+++||+|++|||||++|+++..... .......+.+++|+.|+++|+++|+.+.|+.+||||++|
T Consensus 4192 ~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~--~~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lG 4269 (4334)
T PRK05691 4192 AELPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQL--QSQAYLAPRNELEQTLATIWADVLKVERVGVHDNFFELG 4269 (4334)
T ss_pred hhCChhhcCcceeecccCCCCCCCcccHhhcCCCccccc--cccccCCCCCHHHHHHHHHHHHHhCCCcCCCCCchhhcC
Confidence 999999999999999999999999999999987532111 112234577899999999999999999999999999999
Q ss_pred CChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 318 GNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 318 gdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
||||+||+|+.++ .+++.+||++||+++||.++...
T Consensus 4270 g~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4270 GHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 9999999998764 47889999999999999999753
No 5
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1.1e-45 Score=493.43 Aligned_cols=324 Identities=30% Similarity=0.483 Sum_probs=276.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++.|.+.+++..++|.||+||++++++.+.+.... .......++|+|++++.++|+
T Consensus 1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~----~~~~~~~~iG~p~~~~~~~vl 1906 (3956)
T PRK12467 1831 EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD----LEGRDSVPIGQPIANLSTYIL 1906 (3956)
T ss_pred ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccc----cccCCCCCcccccCCCEEEEE
Confidence 4578999999999999999999999988888999999999999888765543211 112245789999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.|..|||+|+|+++++||+++|+.|+++|+..|... .+.+||+|||++++++||.|+|+||.|+
T Consensus 1907 d~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~--------~~~r~yrTGDl~~~~~dG~l~~~GR~D~ 1978 (3956)
T PRK12467 1907 DASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGT--------VGSRLYRTGDLARYRADGVIEYLGRIDH 1978 (3956)
T ss_pred CCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCC--------CCccceeccceEEECCCCCEEEecccCc
Confidence 8766 3567899999999999999999999999998766431 2568999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHhcCCCCCcC
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~l~~~l~~~~~p 246 (829)
|||++|+||+|.|||++|.++|+|.+|+|++.+ ...+..+++++++...... .....+++++++++.||.||+|
T Consensus 1979 qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP 2057 (3956)
T PRK12467 1979 QVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVP 2057 (3956)
T ss_pred eEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCc
Confidence 999999999999999999999999999999886 3445689999987654221 1124468999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHH
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l 326 (829)
..++.+++||+|++|||||++|++....... .....+.+++|+.++++|+++|+++.|+.+||||++|||||+||+|
T Consensus 2058 ~~~~~l~~lP~t~~GKidr~~L~~~~~~~~~---~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l 2134 (3956)
T PRK12467 2058 AHLVFLARMPLTPNGKLDRKALPAPDASELQ---QAYVAPQSELEQRLAAIWQDVLGLEQVGLHDNFFELGGDSIISIQV 2134 (3956)
T ss_pred hhhhhhhcCCCCCCCCcchhhCCCCcccccc---ccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhcCCchHHHHHH
Confidence 9999999999999999999999876543222 2234567889999999999999999999999999999999999999
Q ss_pred HHHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 327 AHNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 327 ~~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
++++ .+++++||++||+++||..+....
T Consensus 2135 ~~~~~~~g~~l~~~~if~~~ti~~la~~~~~~~ 2167 (3956)
T PRK12467 2135 VSRARQAGIRFTPKDLFQHQTVQSLAAVAQEGD 2167 (3956)
T ss_pred HHHHHHcCCCCCHHHHhcCCCHHHHHHHHhhcc
Confidence 8875 488999999999999999886543
No 6
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=100.00 E-value=7.9e-45 Score=456.22 Aligned_cols=351 Identities=25% Similarity=0.387 Sum_probs=276.9
Q ss_pred cchhhhhcc---CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccc--ccCCCC
Q 003331 4 VLPALQSQH---NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL--EMSTLK 78 (829)
Q Consensus 4 l~~~l~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~--~~~~~~ 78 (829)
++|++.+.+ ....+++||.+++|||++++.+.+++.+.+++++++|.||+||++++++++......... ......
T Consensus 512 ~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1389)
T TIGR03443 512 LTPAMGQLLSAQATTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKD 591 (1389)
T ss_pred eCHHHHHHHHhcccccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccC
Confidence 455554332 234578999999999999999999999888899999999999998877754432111000 000113
Q ss_pred ccccccccCCcEEEEecCCC-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccC-------------c
Q 003331 79 SVPIGLPISNCDIVLVESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC-------------S 140 (829)
Q Consensus 79 ~~~~G~p~~~~~~~i~d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~-------------~ 140 (829)
..++|+|+++++++|+|++. +.+..|||+|+|+++++||+++|+.|.++|+..+....... .
T Consensus 592 ~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1389)
T TIGR03443 592 VMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREF 671 (1389)
T ss_pred cCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccc
Confidence 57899999999999998643 45778999999999999999999999999976543110000 0
Q ss_pred CCCCCcceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 141 VSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 141 ~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
.....++||+|||+|++++||.|+|+||.|||||++|+||+|.|||++|.+||.|.+++|+..++......+++++++..
T Consensus 672 ~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~ 751 (1389)
T TIGR03443 672 WLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQD 751 (1389)
T ss_pred cCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccC
Confidence 00123689999999999999999999999999999999999999999999999999999988877766778999998762
Q ss_pred CCCc-----------------------hHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccc
Q 003331 221 KKTS-----------------------SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTIS 277 (829)
Q Consensus 221 ~~~~-----------------------~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~ 277 (829)
.... .....++++++++++||.||+|..++++++||+|++|||||++|+..+.....
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~ 831 (1389)
T TIGR03443 752 KSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLA 831 (1389)
T ss_pred ccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhh
Confidence 2110 01235689999999999999999999999999999999999999865433221
Q ss_pred cc-----cccccccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHH
Q 003331 278 AQ-----HDADETKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPS 344 (829)
Q Consensus 278 ~~-----~~~~~~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~ 344 (829)
.. ......+.+++++.++++|+++|+. ..++.+++||++|||||+|++|+++| .+++..+|++||+.
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~ 911 (1389)
T TIGR03443 832 AVAKNRSASAADEEFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIK 911 (1389)
T ss_pred hhhccccccccCCCCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHH
Confidence 10 1122345578899999999999986 45999999999999999999998876 37888999999999
Q ss_pred HHHHHHHhhc
Q 003331 345 KLEIALLEKK 354 (829)
Q Consensus 345 ~la~~l~~~~ 354 (829)
+|+.+|.+..
T Consensus 912 ~la~~l~~~~ 921 (1389)
T TIGR03443 912 GFAKEVDRLK 921 (1389)
T ss_pred HHHHHHHhhh
Confidence 9999997654
No 7
>PRK06060 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.8e-44 Score=421.18 Aligned_cols=314 Identities=20% Similarity=0.263 Sum_probs=258.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||++.++..... ......++|+|++++++++
T Consensus 256 ~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---------~~~~~~~iG~p~~~~~v~i 326 (705)
T PRK06060 256 PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRV---------DEWRLGTLGRVLPPYEIRV 326 (705)
T ss_pred cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccC---------CCCCcCcccccCCCcEEEE
Confidence 3457899999999999999999999999988999999999999765432211 1124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+|+|++++.||+++|+.+.. .++||+|||+|+++++|+++|+||.|
T Consensus 327 ~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~------------------~~~~~~TGDl~~~~~dG~l~~~GR~d 388 (705)
T PRK06060 327 VAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA------------------NEGWLDTRDRVCIDSDGWVTYRCRAD 388 (705)
T ss_pred ECCCCCCCCCCCceEEEEccchhhhhhhCCCccccc------------------CCCcEECCeeEEECCCceEEEecccC
Confidence 98776 3566799999999999999999875321 35899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.|||++|.+||.|.+++|++.++...+..+++++++............+++++++++||.|++|..++
T Consensus 389 d~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~ 468 (705)
T PRK06060 389 DTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFA 468 (705)
T ss_pred ceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEE
Confidence 99999999999999999999999999999999888777778899998775543333445689999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhcccccccc------cc---c--------ccc---------------------ccccccHHHH
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSFTI------SA---Q--------HDA---------------------DETKASDLLQ 292 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~~~------~~---~--------~~~---------------------~~~~~~~~~~ 292 (829)
++++||+|++||+||++|++.+.... .. . ... .......+.+
T Consensus 469 ~v~~iP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (705)
T PRK06060 469 VVDRLPRTPNGKLVRGALRKQSPTKPIWELSLTEPGSGVRAQRDDLSASNMTIAGGNDGGATLRERLVALRQERQRLVVD 548 (705)
T ss_pred EeecCCCCcchhhHHHHHHhhccchhhhhhhccCcccCchhhhccccCCCcccCCCCCccHHHHHHHhhCcHHHHHHHHH
Confidence 99999999999999999987542100 00 0 000 0001122445
Q ss_pred HHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 293 VIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 293 ~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++..|+++|+.. .++.+++||++|||||+|++|.++| .++...+|++||+.+|+.+|.+..
T Consensus 549 ~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 549 AVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 6888899999874 4999999999999999999998876 478899999999999999998764
No 8
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.9e-44 Score=489.34 Aligned_cols=316 Identities=29% Similarity=0.467 Sum_probs=273.8
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||++++++++++.+.+++++++|.||+||+++.++...+.. ......++|+|+++++++
T Consensus 765 ~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~ 837 (5163)
T PRK12316 765 DVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE-------EGGDSVPIGRPIANLACY 837 (5163)
T ss_pred ccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEeccc-------ccCCCCCCccccCCCEEE
Confidence 4456789999999999999999999998888899999999999997766544321 122567899999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.|..|||+|+|+++++||+++|+.|++.|+..+.. .+.+||+|||+|++++||.|+|+||+
T Consensus 838 i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~dG~l~~~GR~ 908 (5163)
T PRK12316 838 ILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFV---------AGERMYRTGDLARYRADGVIEYAGRI 908 (5163)
T ss_pred EECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCC---------CCCeeEecCccEEECCCCCEEeeccc
Confidence 999876 356789999999999999999999999999875532 25689999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|||||++|+||+|.|||++|.+||.|.+|+|++.+ +..++|+|++...... ..++++++++++||.||+|..+
T Consensus 909 d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~---~~~~l~~~l~~~Lp~y~vP~~i 981 (5163)
T PRK12316 909 DHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD---WREALKAHLAASLPEYMVPAQW 981 (5163)
T ss_pred CCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC---CHHHHHHHHHhhCCCccCCCeE
Confidence 99999999999999999999999999999999886 3478999988764322 2468999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHH
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHN 329 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 329 (829)
+++++||+|++|||||++|++...... ......+.+++|+.++.+|+++|+++.++.++|||++|||||+||+|+++
T Consensus 982 ~~v~~lP~t~~GKidr~~L~~~~~~~~---~~~~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 1058 (5163)
T PRK12316 982 LALERLPLTPNGKLDRKALPAPEASVA---QQGYVAPRNALERTLAAIWQDVLGVERVGLDDNFFELGGDSIVSIQVVSR 1058 (5163)
T ss_pred EEHhhCCCCCCCChhHHhhcCcccccc---ccccCCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhcCCcHHHHHHHHHH
Confidence 999999999999999999987543221 12334567889999999999999999999999999999999999999877
Q ss_pred c-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 330 L-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 330 l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+ ++++++||++||+++||.++....
T Consensus 1059 ~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1088 (5163)
T PRK12316 1059 ARQAGIQLSPRDLFQHQTIRSLALVAKAGQ 1088 (5163)
T ss_pred HHHhCCCCCHHHHhcCCCHHHHHHHHHhcc
Confidence 5 588999999999999999986643
No 9
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.4e-44 Score=490.73 Aligned_cols=311 Identities=28% Similarity=0.458 Sum_probs=269.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.++|.. +++++|.||+||++++++.+.+.. ......++|+|+++++++|
T Consensus 3307 ~~~~~~lr~~~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~i 3376 (5163)
T PRK12316 3307 AHRCTSLKRIVCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVE-------EGKDAVPIGRPIANRACYI 3376 (5163)
T ss_pred cccCCcceEEEEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccC-------CCCCCCccceecCCCEEEE
Confidence 455789999999999999999999983 678999999999998887665421 1224678999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.|..|||+|+|+++++||+++|+.|+++|+..|.. .+.+||+|||+|++++||.|+|+||+|
T Consensus 3377 ~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~---------~~~~~y~TGDl~~~~~dG~l~~~GR~d 3447 (5163)
T PRK12316 3377 LDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFV---------PGERLYRTGDLARYRADGVIEYIGRVD 3447 (5163)
T ss_pred ECCCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCC---------CCCeeEecCceEEECCCCCEEEecccC
Confidence 98776 457789999999999999999999999999886652 257899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
+|||++|+||+|.|||.+|.++|.|.+|+|+... +..++|++++..... ...+++++++++.||.||+|..++
T Consensus 3448 ~qvKi~G~rIel~eIE~~l~~~~~V~~a~v~~~~----~~~l~a~vv~~~~~~---~~~~~l~~~l~~~Lp~ymvP~~~~ 3520 (5163)
T PRK12316 3448 HQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAG---DLREALKAHLKASLPEYMVPAHLL 3520 (5163)
T ss_pred CeEeeCcEeeChHHHHHHHHhCCCcceEEEEEcc----CCeEEEEEEcCCcCc---ccHHHHHHHHHhhCCcccCcceee
Confidence 9999999999999999999999999999998876 347899998765432 234679999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL 330 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l 330 (829)
.+++||+|++||+||++|++...... ......+.+++|+.++++|+++|+.+.|+.+||||++|||||+||+|+.++
T Consensus 3521 ~~~~lP~t~~GKvdr~~L~~~~~~~~---~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~~~ 3597 (5163)
T PRK12316 3521 FLERMPLTPNGKLDRKALPRPDAALL---QQDYVAPVNELERRLAAIWADVLKLEQVGLTDNFFELGGDSIISLQVVSRA 3597 (5163)
T ss_pred eHhhcCCCCCcchhHHhcCCCccccc---cccccCCCCHHHHHHHHHHHHHhCCCCCCCCCCchhcCCccHHHHHHHHHH
Confidence 99999999999999999987543221 122345778999999999999999999999999999999999999998765
Q ss_pred -----CCcchhhhcCCCHHHHHHHHHhh
Q 003331 331 -----GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 331 -----~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++.+||++||++.||..+...
T Consensus 3598 ~~~g~~~~~~~~f~~~ti~~la~~~~~~ 3625 (5163)
T PRK12316 3598 RQAGIRFTPKDLFQHQTIQGLARVARVG 3625 (5163)
T ss_pred HHcCCCCCHHHHhcCCCHHHHHHHHhhc
Confidence 48899999999999999877543
No 10
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=8.7e-44 Score=479.84 Aligned_cols=326 Identities=25% Similarity=0.414 Sum_probs=276.5
Q ss_pred cchhhhhcc----CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCc
Q 003331 4 VLPALQSQH----NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 79 (829)
Q Consensus 4 l~~~l~~~~----~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 79 (829)
++|++.+.. ....+++||.+++|||++++++.++|.+.+|+++++|.||+||+++.++.+.+... ....
T Consensus 1370 ~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~ 1442 (4334)
T PRK05691 1370 FVPPLLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE-------DGER 1442 (4334)
T ss_pred CcHHHHHHHHhCcccccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccc-------cCCC
Confidence 455554332 33567899999999999999999999999989999999999999987775543221 1245
Q ss_pred cccccccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEE
Q 003331 80 VPIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156 (829)
Q Consensus 80 ~~~G~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 156 (829)
.++|+|++++.++|+|+++ +.|..|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||+|||+|+
T Consensus 1443 ~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~--------~~~~r~yrTGDl~~ 1514 (4334)
T PRK05691 1443 SPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG--------EDGARLYRTGDRAR 1514 (4334)
T ss_pred CcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCC--------CCCceEEEccceEE
Confidence 6899999999999998776 456789999999999999999999999999876542 12468999999999
Q ss_pred EccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHH
Q 003331 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV 236 (829)
Q Consensus 157 ~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l 236 (829)
+++||.++|+||+|+|||++|+||+|.|||.+|.++|.|.+|+|+...... +..++++++........ .++|++++
T Consensus 1515 ~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~-~~~lva~~~~~~~~~~~---~~~l~~~l 1590 (4334)
T PRK05691 1515 WNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAA-GAQLVGYYTGEAGQEAE---AERLKAAL 1590 (4334)
T ss_pred ECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCC-CCEEEEEEEeCCCCCCC---HHHHHHHH
Confidence 999999999999999999999999999999999999999999998766543 36788888876543222 35899999
Q ss_pred HhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCcccc
Q 003331 237 SSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTM 316 (829)
Q Consensus 237 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~l 316 (829)
+++||.||+|..++.+++||+|++|||||++|++.... ......+.+++|+.++++|+++|+.+.|+.+||||++
T Consensus 1591 ~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~~~-----~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~l 1665 (4334)
T PRK05691 1591 AAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQ-----QREHVEPRTELQQQIAAIWREVLGLPRVGLRDDFFAL 1665 (4334)
T ss_pred HHhCccccCCcEEEEccccCCCCCCCcChhhcCccccc-----ccccCCCCCHHHHHHHHHHHHHhCCCCCCCCCchHHh
Confidence 99999999999999999999999999999999764321 1123456788999999999999999999999999999
Q ss_pred CCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 317 GGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 317 GgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
|||||+||+|++++ .+++.++|++||+++||.++...
T Consensus 1666 GGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~ 1708 (4334)
T PRK05691 1666 GGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVARI 1708 (4334)
T ss_pred cccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhh
Confidence 99999999998764 47899999999999999998754
No 11
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-40 Score=351.48 Aligned_cols=235 Identities=28% Similarity=0.393 Sum_probs=212.1
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
...++++||.+.+||+++++++.+++.+.+|...+.+.||+||+++.++...... +.++.++|+++++..+.
T Consensus 294 ~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~--------e~k~~svG~~~~g~~~~ 365 (537)
T KOG1176|consen 294 KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP--------ERKPGSVGRLLPGVRVK 365 (537)
T ss_pred CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc--------cCcccccCccccceEEE
Confidence 3477999999999999999999999999998899999999999996665432211 13678899999999998
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+.++.+ ++...||||++|++++.||++||+.|.+.|.. ++||+|||+|.+|+||+|++++|.
T Consensus 366 v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~---------------~GW~~TGDiGy~D~DG~l~IvdR~ 430 (537)
T KOG1176|consen 366 VLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDD---------------DGWFHTGDLGYFDEDGYLYIVDRS 430 (537)
T ss_pred eeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhccc---------------CCccccCceEEEcCCCeEEEecch
Confidence 887766 45677999999999999999999999998853 499999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
+|+||.+|+.|+|.|||++|..||.|.||+|++.+++..++.++|+|+.+.+....+ ++|.+++++++++|++|..+
T Consensus 431 KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte---~di~~~v~k~l~~y~~~~~V 507 (537)
T KOG1176|consen 431 KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTE---KDIIEYVRKKLPAYKLPGGV 507 (537)
T ss_pred hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCH---HHHHHHHHhhCChhhccCeE
Confidence 999999999999999999999999999999999999999999999999998554444 78999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||+|+.|++.+.
T Consensus 508 ~Fvd~lPKs~~GKi~R~~lr~~~~ 531 (537)
T KOG1176|consen 508 VFVDELPKTPNGKILRRKLRDIAK 531 (537)
T ss_pred EEeccCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999998764
No 12
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=4.2e-38 Score=336.48 Aligned_cols=232 Identities=28% Similarity=0.408 Sum_probs=205.1
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
..+++++||.+.+.||||++++++++.+.+ ++.|.+.||+||++........ ..+..+.|+|+||+++.
T Consensus 285 ~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~----------~~~~g~~g~p~pG~~~~ 353 (528)
T COG0365 285 EPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP----------PVKNGSSGLPLPGYAVR 353 (528)
T ss_pred ccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC----------CcCCCCCCCCCCCceeE
Confidence 457899999999999999999999999998 6999999999999833322111 11334459999999999
Q ss_pred EecCCCC---CCCCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
++|+++. ++. |+|+++.+ +++++||++|+.+.+.|. ++||.|||.+++|+||+++|+|
T Consensus 354 vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~----------------~~~y~tGD~~~~DedGy~~i~G 416 (528)
T COG0365 354 RVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF----------------GRWYRTGDWAERDEDGYFWLHG 416 (528)
T ss_pred EECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh----------------hceeecCceeEEccCCCEEEEe
Confidence 9998763 234 99999987 999999999977777663 2399999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||+.|+||.+.|||++|.+||.|.||+|++.+++..++.++|||+++++.... ++.++|++++++.+.+++.|+
T Consensus 417 R~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~ 495 (528)
T COG0365 417 RSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPR 495 (528)
T ss_pred eccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCc
Confidence 9999999999999999999999999999999999999999999999999999987666 888999999988888899999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+.++++||+|.||||.|+.|++...
T Consensus 496 ~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 496 KIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred eEEEecCCCCCCcccHHHHHHHHHHh
Confidence 99999999999999999999998654
No 13
>PLN02654 acetate-CoA ligase
Probab=100.00 E-value=5.2e-35 Score=337.43 Aligned_cols=240 Identities=23% Similarity=0.266 Sum_probs=206.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCC--ceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.++++||++++++++++.+.++. +.+.+.||+||+++.++...... ......++|+|+++++++
T Consensus 394 ~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~-------~~~~~gs~G~p~~g~~v~ 466 (666)
T PLN02654 394 HSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-------WPQKPGSATFPFFGVQPV 466 (666)
T ss_pred CChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCC-------CCCCCCccCCCCCCceEE
Confidence 467899999999999999999999998853 68999999999986544211110 012456799999999999
Q ss_pred EecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++. .+..|||++++ |++++|||++++.+...|.. ...+||+|||++++++||.++++|
T Consensus 467 i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGD~~~~d~dG~l~i~G 533 (666)
T PLN02654 467 IVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK-------------PFAGYYFSGDGCSRDKDGYYWLTG 533 (666)
T ss_pred EECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh-------------cCCCEEEeCceEEECCCCcEEEee
Confidence 9988764 23469999999 78999999999877665532 125799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++|+++++....+.+.++|+++++++|+.+++|+
T Consensus 534 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~ 613 (666)
T PLN02654 534 RVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPD 613 (666)
T ss_pred eccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999999888889999999987655555667789999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++|||+|++|++.+..
T Consensus 614 ~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 614 KIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred EEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 999999999999999999999987653
No 14
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=294.50 Aligned_cols=238 Identities=23% Similarity=0.302 Sum_probs=208.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.++.||+++|+++++.+.....=..+...||+|||+...+.....+.+ +...-++|+.+++.+..+
T Consensus 346 ~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~------~~~~ksVG~~m~h~Ea~i 419 (596)
T KOG1177|consen 346 QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPP------EERIKSVGHLMDHYEAAI 419 (596)
T ss_pred cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCH------HHHHhhhhhccccccccc
Confidence 35689999999999999999999998866434588899999999776654333322 224567999999999999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|.++. .+..|||+++|.+.+.|||++++.|.+... .++||+|||++.++++|.+.++||.+
T Consensus 420 v~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~---------------~drW~~TGDi~~m~enG~i~iVGRsk 484 (596)
T KOG1177|consen 420 VDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIG---------------NDRWYDTGDIAVMDENGTIEIVGRSK 484 (596)
T ss_pred ccCCCCccccCCCceEEEEechhheeecCCcccchhhcc---------------cccceecCceEEEcCCCcEEEEEccc
Confidence 997774 455699999999999999999998887653 58999999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+|+.+|++|+|.|||+.|.+||.|.++.|++.+++..++.++|++.+....... ...++|+.+++.++..+.+|++|+
T Consensus 485 dmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFKiPky~v 563 (596)
T KOG1177|consen 485 DMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFKIPKYFV 563 (596)
T ss_pred CeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhcccccccCCcEEE
Confidence 9999999999999999999999999999999999999999999999998775542 456789999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|.+|||+|-+++++..
T Consensus 564 f~~~FPlT~tGKIqKFeir~~~k 586 (596)
T KOG1177|consen 564 FVDEFPLTTTGKIQKFEIREMSK 586 (596)
T ss_pred EeccCcccccccchhHHHHHHHH
Confidence 99999999999999999987654
No 15
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=100.00 E-value=4.9e-33 Score=299.59 Aligned_cols=318 Identities=22% Similarity=0.395 Sum_probs=258.0
Q ss_pred ccccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE
Q 003331 459 RGFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV 533 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v 533 (829)
...++++|++++++++. ++|++ .++.||+++.+|.|+++|..||+++|+++++..+..++.+ +++.+|+
T Consensus 37 ~~~~~~~W~~~~~~~~~~~~~~~~p~v----~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v 110 (377)
T TIGR03300 37 TVKVDQVWSASVGDGVGHYYLRLQPAV----AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFV 110 (377)
T ss_pred cCcceeeeEEEcCCCcCccccccceEE----ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEE
Confidence 34578899999999875 68887 5889999999999999999999999999988876555544 4578999
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-----ccccee
Q 003331 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-----FGSPAI 608 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-----~~~~~~ 608 (829)
++.++.|++||.++|+++|++...+.+.+.|++.+ +.+++++.++.|+++|.++|+.+|++...... .++|++
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 99999999999999999999988888888887754 78999999999999999999999998765432 356666
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.+ +.+|+++.+|.++++|+++ |+.+|+.....+.. ....+...++.+|+++.+|.++++| .+|+++
T Consensus 189 ~~--~~v~~~~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 189 AD--GGVLVGFAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred EC--CEEEEECCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 65 7899999999999999988 99999876432210 0111223578999999999999999 999999
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCccccccccccccccccccccCCCcEEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
|+.+... ...| ...++.||+++.+|.|+++|..+|+.+|++. .......+|.. .++.++++
T Consensus 265 W~~~~~~--~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-------------~g~~l~~~ 326 (377)
T TIGR03300 265 WKRDASS--YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-------------VGGYLVVG 326 (377)
T ss_pred EeeccCC--ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-------------ECCEEEEE
Confidence 9987432 2333 2347899999999999999999999999873 33333333332 27899999
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCC-cccccceEECCEEEEeeeCCeEEEE
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~l~~~ 819 (829)
+.+|.|+++|..+| +..++.++.+ .+.++|++.++.||+++.||.||||
T Consensus 327 ~~~G~l~~~d~~tG-------------~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 327 DFEGYLHWLSREDG-------------SFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred eCCCEEEEEECCCC-------------CEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 99999999998876 6677777766 5788999999999999999999997
No 16
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=7.5e-35 Score=334.91 Aligned_cols=236 Identities=19% Similarity=0.308 Sum_probs=202.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++++.+ ++++++.||+||+++.++.. ... ......++|+|+++++++|+
T Consensus 377 ~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~-~~~-------~~~~~~s~G~p~~g~~~~i~ 447 (647)
T PTZ00237 377 YDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYC-YGH-------INIPYNATGVPSIFIKPSIL 447 (647)
T ss_pred cCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhcc-CCC-------CCCCCCCCccCcCCceEEEE
Confidence 3578999999999999999999999988 68999999999998544321 110 11234679999999999999
Q ss_pred cCCCC---CCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 95 ESDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
|+++. .++.|||++++| +++.|||++++.+.+.|.. ..+||+|||+|+++++|+++|+||
T Consensus 448 d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~--------------~~g~~~TGDlg~~d~dG~l~i~GR 513 (647)
T PTZ00237 448 SEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK--------------FPGYYNSGDLGFKDENGYYTIVSR 513 (647)
T ss_pred CCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhC--------------CCCEEECCcEEEECCCCeEEEEec
Confidence 98763 466799999986 7899999999887766632 257999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC----chHHHHHHHHHHHHhcCCCCC
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT----SSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~l~~~l~~~l~~~~ 244 (829)
.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++.... ..+.+.++|+++++++|+.++
T Consensus 514 ~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~ 593 (647)
T PTZ00237 514 SDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLA 593 (647)
T ss_pred cCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999999999999887788999999874321 234566788999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 245 IPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+|+.++++++||+|++|||+|+.|++.+.
T Consensus 594 ~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 594 VLRKIIIVNQLPKTKTGKIPRQIISKFLN 622 (647)
T ss_pred cCcEEEEcCCCCCCCCccEeHHHHHHHHc
Confidence 99999999999999999999999998764
No 17
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=9.6e-35 Score=335.40 Aligned_cols=240 Identities=24% Similarity=0.304 Sum_probs=206.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ ++++++.||+||+++.++...... ......++|+|+++++++
T Consensus 355 ~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-------~~~~~~~~G~p~~g~~~~ 427 (625)
T TIGR02188 355 HDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGA-------TPTKPGSATLPFFGIEPA 427 (625)
T ss_pred CCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCC-------CCcCCCcccCCcCCceEE
Confidence 45789999999999999999999998875 378999999999987654321110 112456799999999999
Q ss_pred EecCCCC----CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 93 LVESDTV----KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 93 i~d~~~~----~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++|+++. +++.|||+|+| |++++|||++++.+...|.. ...+||+|||+++++++|.++++
T Consensus 428 i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l~i~ 494 (625)
T TIGR02188 428 VVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS-------------PFPGYYFTGDGARRDKDGYIWIT 494 (625)
T ss_pred EECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc-------------cCCCEEECCceEEEcCCCcEEEE
Confidence 9987663 46679999999 68999999998766655532 13569999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+.....+...++|++++++.|+.+++|
T Consensus 495 GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 574 (625)
T TIGR02188 495 GRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKP 574 (625)
T ss_pred ecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccC
Confidence 99999999999999999999999999999999999999888888999999998776555556788999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
..++++++||+|++||++|+.|++.+..
T Consensus 575 ~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 575 DKIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred cEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 9999999999999999999999987654
No 18
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.3e-34 Score=334.71 Aligned_cols=240 Identities=24% Similarity=0.310 Sum_probs=204.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ ++++++.||+||++..++...... ......++|+|+++++++
T Consensus 364 ~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~~vG~p~~g~~~~ 436 (637)
T PRK00174 364 YDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA-------TPLKPGSATRPLPGIQPA 436 (637)
T ss_pred CCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC-------CCcCCCcccCCCCCceEE
Confidence 45789999999999999999999988874 378999999999987554321110 112345799999999999
Q ss_pred EecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++. .++.|||+|+| |++++|||++++.+.+.|.. ..++||+|||+++++++|.++|+|
T Consensus 437 i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l~~~G 503 (637)
T PRK00174 437 VVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS-------------TFKGMYFTGDGARRDEDGYYWITG 503 (637)
T ss_pred EECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc-------------CCCCEEECCceEEEcCCCcEEEEE
Confidence 9998763 46679999999 69999999998766554422 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.++...++.+++++++.+.....+...++|++++++.|+.+++|.
T Consensus 504 R~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 583 (637)
T PRK00174 504 RVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPD 583 (637)
T ss_pred ecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCC
Confidence 99999999999999999999999999999999999998888889999999887654445566789999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++||++|++|++....
T Consensus 584 ~i~~v~~lP~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 584 VIQFAPGLPKTRSGKIMRRILRKIAEG 610 (637)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999987543
No 19
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-35 Score=329.30 Aligned_cols=232 Identities=29% Similarity=0.440 Sum_probs=202.9
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 98 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~ 98 (829)
+||.++.||+++++++++++.+.++...+++.||+||++..++...... . ......+|.|+++++++|+|+++
T Consensus 292 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~------~~~~~~~G~~~pg~~v~Ivd~~~ 364 (534)
T COG0318 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L------LAKPGSVGRPLPGVEVRIVDPDG 364 (534)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch-h------hhcCCcccccCCCcEEEEEeCCC
Confidence 3999999999999999999999997678999999999997666543222 1 11344559999999999999765
Q ss_pred C---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEE
Q 003331 99 V---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175 (829)
Q Consensus 99 ~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~ 175 (829)
. ++..|||+|+||.++.|||++|+.|.+.|.. ++||+|||+|++|++|.++|+||.+|+||.
T Consensus 365 ~~~~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~---------------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~ 429 (534)
T COG0318 365 GEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE---------------DGWLRTGDLGYVDEDGYLYIVGRLKDLIIS 429 (534)
T ss_pred CccCCCCceEEEEECchhhhhhcCChHHHHHhhcc---------------CCeeeecceEEEcCCccEEEEeccceEEEe
Confidence 2 3557999999999999999999999987732 489999999999999999999999999999
Q ss_pred CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcc
Q 003331 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255 (829)
Q Consensus 176 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l 255 (829)
+|++|+|.|||.++.+||.|.+++|++.+++..++.++|+++++.... .....++|+++++++++.+.+|+.++++++|
T Consensus 430 gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~-~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~l 508 (534)
T COG0318 430 GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDEL 508 (534)
T ss_pred CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC-CCCCHHHHHHHHHhhhhcccCCeEEEEeCCC
Confidence 999999999999999999999999999999999999999999987632 1124578999999999999999999999999
Q ss_pred cCCCCCCcchhhhccccc
Q 003331 256 PMTSSGKVDYASLSASTS 273 (829)
Q Consensus 256 P~t~~GKi~r~~l~~~~~ 273 (829)
|+|++||++|++|++.+.
T Consensus 509 P~t~sGKi~r~~lr~~~~ 526 (534)
T COG0318 509 PRTASGKIDRRALREEYR 526 (534)
T ss_pred CCCCchhhhHHHHHHHHH
Confidence 999999999999987654
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=100.00 E-value=1.3e-32 Score=296.70 Aligned_cols=320 Identities=20% Similarity=0.345 Sum_probs=255.2
Q ss_pred ccccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce---------eeceEE
Q 003331 459 RGFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---------ECSAAV 524 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~---------~~~~~~ 524 (829)
...++++|+.+++..+. ++|++ .+++||+++.++.|+++|..||+++|+++..... ..+..+
T Consensus 41 ~~~~~~~W~~~~g~g~~~~~~~~sPvv----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 116 (394)
T PRK11138 41 QFTPTTVWSTSVGDGVGDYYSRLHPAV----AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV 116 (394)
T ss_pred cCCcceeeEEEcCCCCccceeeeccEE----ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccccccccccccc
Confidence 34678899999987763 47888 6889999999999999999999999998775410 111112
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc---
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--- 601 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--- 601 (829)
..+++.||+++.++.|+++|++||+++|+++..+.+.++|++.+ +.+|+++.++.|+++|+++|+.+|++.....
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 23456899999999999999999999999998888888888874 7899999999999999999999999976532
Q ss_pred --ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc-----------eeeeeeeecCCEEEEEeeCCeE
Q 003331 602 --IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-----------FASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 602 --~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-----------~~s~~~~~~~~~l~~~~~~g~i 668 (829)
..++|++.. +.+++++.+|.++++|.++ |+.+|+.....+. ..++.+ .++.+|+++.+|.+
T Consensus 195 ~~~~~sP~v~~--~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~~g~l 268 (394)
T PRK11138 195 LRGESAPATAF--GGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVYALAYNGNL 268 (394)
T ss_pred ccCCCCCEEEC--CEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEE--ECCEEEEEEcCCeE
Confidence 235777765 7899999999999999988 9999987653321 123333 47899999999999
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec-CCcccccccccccccccccc
Q 003331 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 746 (829)
+++| .+|+++|+.+.+.. ..+ ...++.||+++.+|.++++|.++|+.+|+.+. ......+|.+
T Consensus 269 ~ald~~tG~~~W~~~~~~~--~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---------- 333 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSV--NDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---------- 333 (394)
T ss_pred EEEECCCCCEEEeecCCCc--cCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE----------
Confidence 9999 99999999875432 122 23478999999999999999999999998653 2222233322
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEeeeCCeEEEEec
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~vg~~~g~l~~~d~ 821 (829)
.++.+|+++.+|.|+++|.++| +.+|+.++. +.+.++|++.+++||+++.+|.||++++
T Consensus 334 ---~~g~l~v~~~~G~l~~ld~~tG-------------~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ---YNGYLVVGDSEGYLHWINREDG-------------RFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCC-------------CEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 3789999999999999999877 666776664 4577899999999999999999999975
No 21
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=100.00 E-value=2.6e-34 Score=327.50 Aligned_cols=242 Identities=22% Similarity=0.358 Sum_probs=200.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCc--------------ccccCCCCcc
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS--------------ILEMSTLKSV 80 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 80 (829)
..+++||.+++|||++++.+.+.+.+.++++.+++.||+||++..++......... ..........
T Consensus 285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (563)
T PLN02860 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGV 364 (563)
T ss_pred ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCc
Confidence 45789999999999999999999999998899999999999986554332211000 0000011234
Q ss_pred ccccccCCcEEEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 81 PIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 81 ~~G~p~~~~~~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
++|+|++++++++++++ +++.|||+++|++++.||+++|+.+.+.|. .++||+|||+|+++++
T Consensus 365 ~vG~p~~~~~v~i~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDl~~~d~d 427 (563)
T PLN02860 365 CVGKPAPHVELKIGLDE--SSRVGRILTRGPHVMLGYWGQNSETASVLS---------------NDGWLDTGDIGWIDKA 427 (563)
T ss_pred ccCCccCCcEEEEecCC--CCceeEEEEecCcccccccCCccccchhcc---------------CCCeEEccceEEEcCC
Confidence 78999999999999765 677899999999999999999998887763 3689999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------chHHHH
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------SSEIFL 229 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~ 229 (829)
|.++|+||.||+||++|++|+|.|||+++.+||.|.+++|++.++...++.++++++++++.. ......
T Consensus 428 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 507 (563)
T PLN02860 428 GNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS 507 (563)
T ss_pred CCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccH
Confidence 999999999999999999999999999999999999999999998877788999999875421 011234
Q ss_pred HHHHHHHHh-cCCCCCcCCeEEEe-CcccCCCCCCcchhhhccccc
Q 003331 230 SSIKSWVSS-KLPLAMIPNRFVFM-DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 230 ~~l~~~l~~-~l~~~~~p~~~~~~-~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.|++++++ .|+.|++|..++++ ++||+|++|||+|++|++++.
T Consensus 508 ~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~ 553 (563)
T PLN02860 508 ETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVL 553 (563)
T ss_pred HHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHH
Confidence 678888887 59999999999875 679999999999999987654
No 22
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=100.00 E-value=5.5e-34 Score=328.37 Aligned_cols=242 Identities=23% Similarity=0.292 Sum_probs=200.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++++.+.+ +..+++.||+||++..++...... ........++|+|+++++++|+
T Consensus 351 ~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~-----~~~~~~~gs~G~p~~g~~v~i~ 424 (628)
T TIGR02316 351 HDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGL-----DLKPVKLGSPGLPMYGYHLRVL 424 (628)
T ss_pred CCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCC-----CcCCCCCCCcccCcCCceEEEE
Confidence 4688999999999999999999998887 678999999999985443221110 0011244678999999999999
Q ss_pred cC-CC---CCCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+ ++ +.++.|||+++|| +++.||+++++.+.+.|... ..++||+|||+|++++||+++|+|
T Consensus 425 d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~TGD~g~~d~dG~l~i~G 492 (628)
T TIGR02316 425 DEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSH------------FKRPLYSSFDWGIRDEDGYTFILG 492 (628)
T ss_pred ECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhc------------CCCCEEECCceEEEcCCCcEEEEE
Confidence 87 34 3467799999998 57889999876554443221 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----chHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----SSEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++++.... ..+...++|+++++++|+.
T Consensus 493 R~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~ 572 (628)
T TIGR02316 493 RTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572 (628)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999888889999999875432 1234567899999999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
|++|..++++++||+|++||++|+.|++.+..
T Consensus 573 ~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 573 VARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred CcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 99999999999999999999999999987653
No 23
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.2e-33 Score=325.32 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=201.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhC-CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLF-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++++++.+.+ +++.+++.||+||++..+... ... ......++|.|+++++++|
T Consensus 380 ~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~-------~~~~~g~~g~p~~g~~~~i 451 (655)
T PRK03584 380 HDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG-NPL-------LPVYRGEIQCRGLGMAVEA 451 (655)
T ss_pred CChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC-CCC-------CCcCCCccCCCcCCceeEE
Confidence 4678999999999999999999999987 468899999999986432211 100 0123457899999999999
Q ss_pred ecCCCC--CCCCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~~--~~~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|+++. .++.|||+|+|+ +++.||+++++.+. |...... ...+||+|||+|++++||.++|+||.
T Consensus 452 vd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~--~~~~~~~---------~~~g~~~TGDl~~~d~dG~l~i~GR~ 520 (655)
T PRK03584 452 WDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSR--YRDAYFD---------TFPGVWRHGDWIEITEHGGVVIYGRS 520 (655)
T ss_pred ECCCCCCCCCCceEEEEccCCCCCcceeeCCCccch--HHHhhhc---------cCCCEeecCCeEEECCCCeEEEEeec
Confidence 998764 367799999996 79999999987542 2111100 12468999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++.+....+.+.++|++++++.|+.+++|..+
T Consensus 521 dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i 600 (655)
T PRK03584 521 DATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKI 600 (655)
T ss_pred cCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEE
Confidence 99999999999999999999999999999999999987888999999998765555556678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++++||+|++|||+|++|++.+..
T Consensus 601 ~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 601 IAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred EECCCCCCCCCccchHHHHHHHHcC
Confidence 9999999999999999999987653
No 24
>PRK07788 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.4e-33 Score=321.24 Aligned_cols=226 Identities=27% Similarity=0.347 Sum_probs=194.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++++.+.+ +..++|.||+||++..+.... .. ......++|+|+++++++++
T Consensus 320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~-------~~~~~~~vG~~~~~~~~~i~ 390 (549)
T PRK07788 320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-ED-------LAEAPGTVGRPPKGVTVKIL 390 (549)
T ss_pred CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hh-------hhhcCCCcccCCCCcEEEEE
Confidence 3578999999999999999999999988 578999999999875443211 10 01234679999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+++|+.++.||++++.. . + .++||+|||+++++++|.++|+||.||
T Consensus 391 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR~dd 451 (549)
T PRK07788 391 DENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I----------------IDGLLSSGDVGYFDEDGLLFVDGRDDD 451 (549)
T ss_pred CCCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c----------------cCCceecCceEEEcCCCCEEEeccCcc
Confidence 8776 3466799999999999999998754 1 1 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.++|.|.+++|++.+++..++.++++++++.+.... .++++++++++||.|++|..+++
T Consensus 452 ~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~ 528 (549)
T PRK07788 452 MIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD---EDAIKDYVRDNLARYKVPRDVVF 528 (549)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC---HHHHHHHHHHhhhcCCCCcEEEE
Confidence 999999999999999999999999999999998887788899999987643322 36899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|+++
T Consensus 529 v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 529 LDELPRNPTGKVLKRELREM 548 (549)
T ss_pred eCCCCCCCCcCEeHHHhhcc
Confidence 99999999999999999753
No 25
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.6e-33 Score=318.47 Aligned_cols=226 Identities=27% Similarity=0.413 Sum_probs=185.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.++++.+++.||+||++.+++...... .....++|+|+++++++++
T Consensus 296 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~vG~p~~g~~v~i~ 367 (539)
T PRK06334 296 SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS--------PKHESCVGMPIRGMDVLIV 367 (539)
T ss_pred cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC--------CCCCCcCceecCCCEEEEE
Confidence 45789999999999999999999999998899999999999987665432111 1134578999999999999
Q ss_pred cCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++. ++++.|||+|+|++++.||+++|+.+. |... ++++||+|||+|+++++|.++|+||.|
T Consensus 368 d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~~------------~~~~w~~TGD~g~~d~~G~l~~~GR~~ 433 (539)
T PRK06334 368 SEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQG--FVEL------------GGETWYVTGDLGYVDRHGELFLKGRLS 433 (539)
T ss_pred cCCCCccCCCCceEEEEEecCcccccccCCccccc--ceee------------CCceeEECCCEEEECCCCeEEEEeccC
Confidence 8643 456789999999999999999987543 3211 146899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeE------EEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCC
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVD------TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLA 243 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~ 243 (829)
|+||++|++|+|.|||++|.+||+|.+ ++|++.+++. ..++++++... . .+++++++++. ++.|
T Consensus 434 d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~ 504 (539)
T PRK06334 434 RFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFPT---S----ISEVNDILKNSKTSSI 504 (539)
T ss_pred CeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEeccC---C----hHHHHHHHHhcCCccc
Confidence 999999999999999999999999987 6677666432 34555554321 1 24678888886 7899
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccc
Q 003331 244 MIPNRFVFMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~ 271 (829)
++|..++++++||+|++|||+|++|++.
T Consensus 505 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 532 (539)
T PRK06334 505 LKISYHHQVESIPMLGTGKPDYCSLNAL 532 (539)
T ss_pred ccchheeeecccccccCCcccHHHHHHH
Confidence 9999999999999999999999999865
No 26
>PLN03051 acyl-activating enzyme; Provisional
Probab=100.00 E-value=4.7e-33 Score=311.94 Aligned_cols=242 Identities=19% Similarity=0.196 Sum_probs=187.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++.+++.+.++ ++.+++.||+||++..++... .. ......++|+|.++++++|
T Consensus 233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~-------~~~~~~~~G~p~~~~~~~i 304 (499)
T PLN03051 233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST-LL-------QPQAPGAFSTASLGTRFVL 304 (499)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc-cc-------CCCCCccccCCCCCceEEE
Confidence 35789999999999999999887776331 378999999999875333211 10 0113457999999999999
Q ss_pred ecCCCC---CC--CCCeEEEccccc--cccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 94 VESDTV---KP--DEGEIYAGGLCL--SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 94 ~d~~~~---~~--~~Gel~i~g~~~--~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|+++. .+ ..|||+++|+.+ +.||++++. +. .|.. ..+. ....+.+||+|||+|++|+||+|+|+
T Consensus 305 vd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~~--g~~~----~~~~~~~~~~TGDlg~~d~dG~l~~~ 376 (499)
T PLN03051 305 LNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DK-VYYK--GMPM----YGSKGMPLRRHGDIMKRTPGGYFCVQ 376 (499)
T ss_pred ECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cc-eeee--cCCc----cccCCcceeecCCeEEECCCCcEEEE
Confidence 997763 23 369999999976 579998653 32 3321 1000 00123569999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhC-CCCeeEEEEEEeecCCce-EEEEEEE---EecCCC--CchHHHHHHHHHHHHhc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGEL-VILVAFI---VLKEKK--TSSEIFLSSIKSWVSSK 239 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~--~~~~~~~~~l~~~l~~~ 239 (829)
||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.+++..+ +.+++++ +++.+. ...+++.+.++++++++
T Consensus 377 gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~ 456 (499)
T PLN03051 377 GRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTN 456 (499)
T ss_pred eccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999996 999999999999887777 6788888 666543 23345566777778888
Q ss_pred CCCCCcCCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|+.++.|..++++++||+|++|||+|++|++.+
T Consensus 457 l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~ 489 (499)
T PLN03051 457 LNPLFKVSRVKIVPELPRNASNKLLRRVLRDQL 489 (499)
T ss_pred cCCccCCceEEEcCCCCCCCCccHHHHHHHHHH
Confidence 998777778999999999999999999998644
No 27
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=300.74 Aligned_cols=241 Identities=26% Similarity=0.362 Sum_probs=211.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
+..++||++.++|||+.++.++++.+.+...+|++.||+||++.+++....... ..++...+.|.+++.+.|+
T Consensus 356 ~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~-------p~~pg~~~~p~~g~~v~i~ 428 (626)
T KOG1175|consen 356 YSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL-------PIKPGSAGKPFPGYDVQIL 428 (626)
T ss_pred cccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC-------CcCccccCCCCCCcceEEE
Confidence 444789999999999999999999999843469999999999988875332221 2367789999999999999
Q ss_pred cCCCC--CC--CCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ESDTV--KP--DEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~~~~--~~--~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+++. ++ +.|||++..+ +.+++||++++ +|....+. ...++|+|||.+++|+||+++++|
T Consensus 429 de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~e----rf~~~yf~---------k~pg~y~tGD~~~rd~dGY~~i~G 495 (626)
T KOG1175|consen 429 DENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHE----RFRAAYFK---------KFPGYYFTGDGGRRDEDGYYWILG 495 (626)
T ss_pred CCCCCCcCCCCceeEEEEeCCCCccccccccCCHH----Hhhhhhcc---------cCCceEEecCceEEcCCceEEEEe
Confidence 98763 22 6799999874 78999999987 34332221 246899999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+|+++|+|+.+.|||+++.+||.|.|++|++.+++..++.+++|++++++....+.+.++|+++++..+.++..|+
T Consensus 496 R~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~ 575 (626)
T KOG1175|consen 496 RVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPR 575 (626)
T ss_pred cccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
.+++++.||+|.+||+.|+.|++....+
T Consensus 576 ~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 576 LIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred eeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999999999999999887655
No 28
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=100.00 E-value=5e-33 Score=320.54 Aligned_cols=238 Identities=17% Similarity=0.254 Sum_probs=199.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++++++.+.++ +..+.+.||+||++....... .. .......+|.|.+++++++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-~~-------~~~~~g~~g~p~~g~~v~i 452 (652)
T TIGR01217 381 HDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN-PT-------LPVHIGEIQAPGLGTAVQS 452 (652)
T ss_pred CChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC-CC-------CCCcCCccCCCcCCCceEE
Confidence 46899999999999999999999988874 356889999999743222111 00 0113356889999999999
Q ss_pred ecCCCC--CCCCCeEEEccc--cccccccCCCCCCc--ccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 94 VESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMP--SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 94 ~d~~~~--~~~~Gel~i~g~--~~~~gy~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
+|+++. +++.|||+++|+ +++.|||++++.+. +.+.. ...+||+|||+|++++||+++|+|
T Consensus 453 vd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~-------------~~~g~~~tGDlg~~d~dG~l~i~G 519 (652)
T TIGR01217 453 WDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-------------TYPGVWRHGDWITLTPRGGIVIHG 519 (652)
T ss_pred ECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhc-------------CCCCEEEcCCcEEECCCCcEEEEe
Confidence 998774 367899999996 68999999998553 11111 124689999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||+++++....+.+.++|++++++.|+.+++|.
T Consensus 520 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 599 (652)
T TIGR01217 520 RSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPD 599 (652)
T ss_pred cccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCC
Confidence 99999999999999999999999999999999999999888899999999987655555667889999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.++++++||+|++|||+|+.|++.+.
T Consensus 600 ~i~~v~~lP~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 600 EIIEVPGIPHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred EEEECCCCCCCCCccChHHHHHHHHc
Confidence 99999999999999999999998764
No 29
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.1e-33 Score=320.77 Aligned_cols=233 Identities=25% Similarity=0.314 Sum_probs=203.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+ +.++++.||+||++..++..... ......++|+|+++++++++
T Consensus 320 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~g~~~~i~ 390 (570)
T PRK04319 320 YDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA--------MDIKPGSMGKPLPGIEAAIV 390 (570)
T ss_pred CCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC--------CCCCCCcCcCCCCCCEEEEE
Confidence 4578999999999999999999999887 68899999999998654422111 11245679999999999999
Q ss_pred cCCC---CCCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDT---VKPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ ++++.|||+++| ++++.||+++++.+.+.|. ++||+|||+++++++|+++++||.
T Consensus 391 d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~----------------~gw~~TGDl~~~~~~g~l~~~GR~ 454 (570)
T PRK04319 391 DDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA----------------GDWYVSGDSAYMDEDGYFWFQGRV 454 (570)
T ss_pred CCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc----------------CCceEeCcEEEECCCeeEEEEecC
Confidence 8766 356779999987 8999999999998887762 469999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++....+.+.++|+++++++|+.|++|..+
T Consensus 455 ~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 534 (570)
T PRK04319 455 DDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREI 534 (570)
T ss_pred CCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEE
Confidence 99999999999999999999999999999999998887788999999988765545556678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++++||+|++||++|++|+++.
T Consensus 535 ~~v~~iP~t~~GKv~r~~L~~~~ 557 (570)
T PRK04319 535 EFKDKLPKTRSGKIMRRVLKAWE 557 (570)
T ss_pred EEeCCCCCCCchhhhHHHHHHHH
Confidence 99999999999999999998764
No 30
>PRK07529 AMP-binding domain protein; Validated
Probab=100.00 E-value=4.9e-33 Score=320.08 Aligned_cols=230 Identities=21% Similarity=0.328 Sum_probs=195.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++.+++.+.+ +++++|.||+||++++++..... ......++|.|++++.++++
T Consensus 330 ~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--------~~~~~~svG~~~p~~~v~i~ 400 (632)
T PRK07529 330 HDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD--------GERRIGSVGLRLPYQRVRVV 400 (632)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc--------ccccCCCcccccCCceEEEE
Confidence 4678999999999999999999999987 78999999999998766532211 11245689999999998885
Q ss_pred --cCCC------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 95 --ESDT------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 95 --d~~~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
|+++ ++++.|||+|+|++++.||++++. +...|. .++||+|||+|+++++|.+++.
T Consensus 401 ~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~---------------~~gw~~TGDlg~~d~dG~l~i~ 464 (632)
T PRK07529 401 ILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWL---------------EDGWLNTGDLGRIDADGYFWLT 464 (632)
T ss_pred EcCCCCcccccCCCCCceEEEEECCCccccccCCcc-cccccc---------------CCCceEcCcEEEEcCCceEEEE
Confidence 4433 346789999999999999998654 444442 3689999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCC-CCCc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP-LAMI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~ 245 (829)
||.||+||++|+||+|.+||++|.+||.|.+|+|++.++...++.++++|++.+.....+ ++++++++++++ .+++
T Consensus 465 GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~---~~l~~~~~~~l~~~~~~ 541 (632)
T PRK07529 465 GRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATE---AELLAFARDHIAERAAV 541 (632)
T ss_pred ecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCH---HHHHHHHHHhcchhccC
Confidence 999999999999999999999999999999999999988877888999999886543332 578888989987 4799
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|..++++++||+|++|||+|++|++.+
T Consensus 542 P~~i~~v~~lP~t~~GKi~r~~Lr~~~ 568 (632)
T PRK07529 542 PKHVRILDALPKTAVGKIFKPALRRDA 568 (632)
T ss_pred CcEEEEecCCCCCCCCcccHHHHHHHH
Confidence 999999999999999999999998654
No 31
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=3e-33 Score=318.57 Aligned_cols=234 Identities=24% Similarity=0.316 Sum_probs=200.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++++++.+.++++.+++.||+||+++.++...... ......++|+|+++++++|+
T Consensus 316 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~~~~~~~v~i~ 388 (560)
T PLN02574 316 EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE-------KLSKYSSVGLLAPNMQAKVV 388 (560)
T ss_pred CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCcc-------ccCCCCceeeeCCCcEEEEE
Confidence 45789999999999999999999999998899999999999986543211110 01235689999999999999
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+ ++ +.++.|||+|+|++++.||+++++.+.+.|. .++||+|||+|+++++|.++++||.|
T Consensus 389 d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~ 453 (560)
T PLN02574 389 DWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTID---------------KDGWLRTGDIAYFDEDGYLYIVDRLK 453 (560)
T ss_pred eCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhcc---------------CCCCcccceEEEEECCCeEEEEecch
Confidence 84 33 3567899999999999999999999887773 36799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++++........ .++++++++++|+.++.|..++
T Consensus 454 d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~v~ 530 (560)
T PLN02574 454 EIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLS---QEAVINYVAKQVAPYKKVRKVV 530 (560)
T ss_pred hheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCC---HHHHHHHHHHhccCcccCcEEE
Confidence 9999999999999999999999999999999988877777888888876543322 3578999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++|||+|++|++.+.
T Consensus 531 ~v~~iP~t~~GKi~r~~L~~~~~ 553 (560)
T PLN02574 531 FVQSIPKSPAGKILRRELKRSLT 553 (560)
T ss_pred EeeccCCCCcchhhHHHHHHHHh
Confidence 99999999999999999987653
No 32
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=100.00 E-value=7.8e-33 Score=319.78 Aligned_cols=242 Identities=26% Similarity=0.326 Sum_probs=199.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+ ++++++.||+||++..+...... . ........++|+|+++++++++
T Consensus 352 ~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~----~~~~~~~~~~G~p~~g~~~~i~ 425 (629)
T PRK10524 352 HDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARG-V----EDRPTRLGSPGVPMYGYNVKLL 425 (629)
T ss_pred cChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCC-c----ccCcCCCCCcccCcCCceEEEE
Confidence 4578999999999999999999999888 68899999999998433221111 0 0011245678999999999999
Q ss_pred cC-CC---CCCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+ ++ +.+..|||+++|| +++.||+++++.+.+.|... ..++||+|||+++++++|.++|+|
T Consensus 426 d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~TGDl~~~d~dG~l~i~G 493 (629)
T PRK10524 426 NEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSL------------FGRQVYSTFDWGIRDADGYYFILG 493 (629)
T ss_pred eCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhcc------------CCCcEEEcCCcEEEcCCCcEEEEE
Confidence 87 55 3466799999998 57889999876554433221 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|.+||.|.+++|++.++...++.++++++++..... .+.+.++|++++++.|+.
T Consensus 494 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 573 (629)
T PRK10524 494 RTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA 573 (629)
T ss_pred EecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999988778889999998764321 234567899999999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++|..++++++||+|++||++|++|++....
T Consensus 574 ~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 574 VARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred CcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 99999999999999999999999999987543
No 33
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=100.00 E-value=6.6e-33 Score=305.19 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=187.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+. ++++++.||+||++..++...... ......++|+|+++++++++
T Consensus 227 ~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~p~~~v~i~ 297 (452)
T PRK07445 227 QWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDD-------FLAGNNSSGQVLPHAQITIP 297 (452)
T ss_pred hhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchh-------hccCCCcCCccCCCCeEEEc
Confidence 457899999999999999999988763 789999999999875543321110 01134578999999999987
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
.+..|||+|+|+.++.||++++.. .++||+|||++++++||+++|.||.||+||
T Consensus 298 -----~g~~Gel~v~g~~~~~gY~~~~~~---------------------~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~ 351 (452)
T PRK07445 298 -----ANQTGNITIQAQSLALGYYPQILD---------------------SQGIFETDDLGYLDAQGYLHILGRNSQKII 351 (452)
T ss_pred -----CCCcceEEEeCCccchhhcCCccC---------------------CCCEEECCCEEEEcCCCCEEEEeecCCEEE
Confidence 356799999999999999974320 357999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++..... ..++++++++++|+.+++|..++++++
T Consensus 352 ~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~L~~~~~P~~i~~v~~ 427 (452)
T PRK07445 352 TGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIKDQLSPFKQPKHWIPVPQ 427 (452)
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCC----CHHHHHHHHHHhCCcccCCeEEEEecC
Confidence 9999999999999999999999999999988877788899988765432 236789999999999999999999999
Q ss_pred ccCCCCCCcchhhhcccccc
Q 003331 255 LPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~ 274 (829)
||+|++||++|++|++++..
T Consensus 428 lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 428 LPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred CCCCCCcccCHHHHHHHHHH
Confidence 99999999999999876644
No 34
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.9e-34 Score=275.44 Aligned_cols=233 Identities=27% Similarity=0.436 Sum_probs=201.9
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDI 91 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~ 91 (829)
...+++|||++-+||..+++++.+++...+ ++.+-+.+||.|.-+. +.+..+.+. .-...-|+|+ |.-++
T Consensus 300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn--yTRLDDp~E------~i~~TQGrPlsP~DEv 370 (542)
T COG1021 300 ERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN--YTRLDDPPE------IIIHTQGRPLSPDDEV 370 (542)
T ss_pred ccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc--ccccCCchH------heeecCCCcCCCccee
Confidence 457799999999999999999999999998 8999999999995432 222222222 2334568887 56779
Q ss_pred EEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 92 VLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 92 ~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+|.++. +|++|+|..+||.-.+||++.|+-++..|.. +|||+|||+++++++|+|.+.||
T Consensus 371 rvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a---------------~GFYrsGD~V~~~~dGyl~V~GR 435 (542)
T COG1021 371 RVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDA---------------DGFYRSGDLVRRDPDGYLVVEGR 435 (542)
T ss_pred EEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCc---------------CCceecCceeEecCCceEEEEee
Confidence 99998874 6788999999999999999999999999854 78999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCC
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPN 247 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~ 247 (829)
.+|||+..|++|..+|||+.|..||.|.+|++++.+++-.+++.+||+++++..... .+++++|.+. +..|.+|+
T Consensus 436 ~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~----~qlr~~L~~~GlAa~K~PD 511 (542)
T COG1021 436 VKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRA----AQLRRFLRERGLAAFKLPD 511 (542)
T ss_pred ehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCH----HHHHHHHHHcchhhhcCCc
Confidence 999999999999999999999999999999999999999999999999998765433 4677777655 88999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++.+++.||+|+-||||+++|++...
T Consensus 512 rie~v~~~P~T~VGKIdKk~Lr~~l~ 537 (542)
T COG1021 512 RIEFVDSLPLTAVGKIDKKALRRRLA 537 (542)
T ss_pred ceeecccCCCcccccccHHHHHHHhh
Confidence 99999999999999999999986543
No 35
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=8.5e-33 Score=315.26 Aligned_cols=229 Identities=23% Similarity=0.306 Sum_probs=198.7
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.+.+.+ ++++++.||+||++.+++..... .....++|.|++++.++++|
T Consensus 324 ~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~---------~~~~~~vG~~~~~~~v~i~d 393 (562)
T PRK05677 324 DFSALKLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ---------AIQVGTIGIPVPSTLCKVID 393 (562)
T ss_pred ChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc---------CCCCCccCccCCCCEEEEEC
Confidence 467999999999999999999999887 78999999999988665432111 12345799999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.+..|||+++|+.+++||+++|+.+.+.|. .++||+|||+++++++|.+++.||.||+
T Consensus 394 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~d~ 458 (562)
T PRK05677 394 DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILD---------------SDGWLKTGDIALIQEDGYMRIVDRKKDM 458 (562)
T ss_pred CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccC---------------CCCcccccceEEECCCCcEEEEecCcCe
Confidence 766 3566799999999999999999999888774 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++...... ..+++++++++.|+.|++|..++++
T Consensus 459 i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~~i~~v 535 (562)
T PRK05677 459 ILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETL---TKEQVMEHMRANLTGYKVPKAVEFR 535 (562)
T ss_pred EEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCC---CHHHHHHHHHHhhhhccCCcEEEEe
Confidence 9999999999999999999999999999999887777788888887654322 2357899999999999999999999
Q ss_pred CcccCCCCCCcchhhhcccc
Q 003331 253 DSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~ 272 (829)
++||+|++||++|++|++..
T Consensus 536 ~~iP~t~sGKi~r~~L~~~~ 555 (562)
T PRK05677 536 DELPTTNVGKILRRELRDEE 555 (562)
T ss_pred ccCCCCCcccccHHHHHHHH
Confidence 99999999999999997643
No 36
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=100.00 E-value=1.8e-30 Score=285.34 Aligned_cols=327 Identities=18% Similarity=0.307 Sum_probs=243.8
Q ss_pred ccccccccccccc--ccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-e------eeceEEeeCCc
Q 003331 459 RGFIQELWKVHME--SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-I------ECSAAVLADFS 529 (829)
Q Consensus 459 ~~~~~~~W~~~~~--~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~------~~~~~~~~~~~ 529 (829)
...+++.|+++++ ..+.++|++ .+++||+++.++.|+++|+.||+++|+++.... . ........+++
T Consensus 36 ~~~~~~~W~~~~~~~~~~~~sPvv----~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 36 VKKLKVAWTFSTGDERGQEGTPLV----VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred hhcceeeEEEECCCCCCcccCCEE----ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 3467889999998 678999998 588999999999999999999999999876543 1 11111111226
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCe------eeeeeeeecCCCEEEEecc---------CCeEEEEEcCCCeEEE
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------VKCQPVVDAPRQLIWCGSH---------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------~~~~~~~~~~~~~i~~gs~---------~g~l~~~d~~tg~~~w 594 (829)
.||+++.++.|+++|++||+++|+++.... +.++|++.+ +.+|+++. ++.++++|.+||+.+|
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 899999999999999999999999988765 567777765 78888763 5789999999999999
Q ss_pred eeccC---------------------CcccccceeecCCCEEEEEecCC------------------eEEEEEccCCCce
Q 003331 595 KLPCG---------------------GSIFGSPAIDEVHDVLYVASTSG------------------RLTAISVKALPFH 635 (829)
Q Consensus 595 ~~~~~---------------------~~~~~~~~~~~~~~~l~v~t~~g------------------~l~~~~~~~~~g~ 635 (829)
+++.. ..++++|.++..++.||+++.++ .|+++|+++ |+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t--G~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT--GK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC--CC
Confidence 98663 12445677776679999998765 799999998 99
Q ss_pred EEEeeccCCcc------eeeeeee----ecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 636 TLWLHELEVPA------FASLCIT----SANR---HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 636 ~~w~~~~~~~~------~~s~~~~----~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
.+|+++...+. ...+.+. .+++ .+++++.+|.++++| .+|+++|+.+....... . ..+.+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMA-----Y-DPGLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccc-----c-CCceE
Confidence 99998754321 1122221 1222 588899999999999 99999999875411111 1 12567
Q ss_pred EEEe------------------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 702 LICS------------------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 702 ~~~t------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
|+++ .+|.|+++|..+|+.+|+.+.......-..-.. .....+...++.+|+++.+|.|
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~---~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP---HWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc---ccCcceEecCCeEEEECCCCeE
Confidence 7753 468899999999999999886621100000000 0001122347899999999999
Q ss_pred EEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCe
Q 003331 764 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 764 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~ 815 (829)
+++|.++| +.+|++++++.+..+|+. .++++|+++.+|+
T Consensus 419 ~ald~~tG-------------~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 419 RAFDATTG-------------KELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred EEEECCCC-------------ceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 99999987 778888999999999984 5999999998774
No 37
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.3e-32 Score=310.66 Aligned_cols=236 Identities=22% Similarity=0.252 Sum_probs=178.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCC---cc---cccCCCCcccc
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLP---SI---LEMSTLKSVPI 82 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 82 (829)
...+++||.+++|||++++++.++|.+.+ +..+++|.||+||+++.++........ .. .........++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 347 (525)
T PRK05851 268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVL 347 (525)
T ss_pred CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeee
Confidence 34578999999999999999999988752 234699999999998665532211000 00 00011234679
Q ss_pred ccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEc
Q 003331 83 GLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158 (829)
Q Consensus 83 G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~ 158 (829)
|+|+++++++|+|+++ +.++.|||+++|++++.||+++|+.+ .++||+|||+++++
T Consensus 348 G~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~--------------------~~~~~~TGDl~~~~ 407 (525)
T PRK05851 348 GNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID--------------------PDDWFPTGDLGYLV 407 (525)
T ss_pred cCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC--------------------CCCceeccceEEEE
Confidence 9999999999998765 24567999999999999999987532 24699999999986
Q ss_pred cCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh
Q 003331 159 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238 (829)
Q Consensus 159 ~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 238 (829)
+|.|+|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++...++++........+.+.+.+++++..
T Consensus 408 -~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 486 (525)
T PRK05851 408 -DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVAS 486 (525)
T ss_pred -CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998877655555555554432212223333444444444
Q ss_pred cCCCCCcCCeEEEeC--cccCCCCCCcchhhhcccc
Q 003331 239 KLPLAMIPNRFVFMD--SLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~ 272 (829)
.+ +++|..+++++ +||+|++|||+|++|++.+
T Consensus 487 ~l--~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~ 520 (525)
T PRK05851 487 EC--GVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSL 520 (525)
T ss_pred Hh--CCCccEEEEECCCCcCcCcchHHHHHHHHHHH
Confidence 33 28999999998 8999999999999998754
No 38
>PRK13382 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.1e-32 Score=307.57 Aligned_cols=224 Identities=25% Similarity=0.334 Sum_probs=190.7
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++++.|.+.+ +..++|.||+||++.+++..... ......++|+|+++++++++|
T Consensus 310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~vG~p~~~~~~~i~d 380 (537)
T PRK13382 310 SGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD--------LRAAPDTAGRPAEGTEIRILD 380 (537)
T ss_pred CccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH--------hccCCCCccccCcCcEEEEEC
Confidence 456899999999999999999999988 56799999999998665432110 012456899999999999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|++++.||+ ++.+.. | .++||+|||+++++++|+++|+||+||+
T Consensus 381 ~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR~dd~ 441 (537)
T PRK13382 381 QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F----------------HDGFMASGDVGYLDENGRLFVVGRDDEM 441 (537)
T ss_pred CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c----------------cCCCEeeCceEEEeCCCcEEEeccccce
Confidence 8763 4567999999999999997 443332 2 2479999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.+||..|.++|.|.+++|++.++...++.+++++++..... ...+++++++++.|+.+++|..++++
T Consensus 442 ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~P~~i~~v 518 (537)
T PRK13382 442 IVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS---ATPETLKQHVRDNLANYKVPRDIVVL 518 (537)
T ss_pred eEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC---CCHHHHHHHHHHhccCCCCCcEEEEe
Confidence 999999999999999999999999999999988777778899998865432 23468999999999999999999999
Q ss_pred CcccCCCCCCcchhhhcc
Q 003331 253 DSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~ 270 (829)
+++|+|++||++|++|++
T Consensus 519 ~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 519 DELPRGATGKILRRELQA 536 (537)
T ss_pred ccCCCCCCCCCcHHhhCC
Confidence 999999999999999874
No 39
>PRK06145 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.4e-32 Score=305.67 Aligned_cols=232 Identities=23% Similarity=0.328 Sum_probs=200.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++.+++.+.+.+++..+++.||+||++..++...... ......++|+|+++++++++
T Consensus 261 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 333 (497)
T PRK06145 261 FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGR-------EIEKIGSTGRALAHVEIRIA 333 (497)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCcc-------ccccCCCcccCCCCceEEEE
Confidence 35678999999999999999999999998899999999999987665432211 01134578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+.+.|. ++||+|||+++++++|+++++||.||
T Consensus 334 ~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~----------------~~~~~TGDl~~~~~~g~l~~~GR~~~ 397 (497)
T PRK06145 334 DGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY----------------GDWFRSGDVGYLDEEGFLYLTDRKKD 397 (497)
T ss_pred CCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHh----------------CCCeeccceEEEcCCCcEEEeccccc
Confidence 8765 3456799999999999999999998888773 47999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.++|+|.+++|++.++...+..+++++++....... .+++++++++.|+.+++|..++.
T Consensus 398 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~ 474 (497)
T PRK06145 398 MIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT---LEALDRHCRQRLASFKVPRQLKV 474 (497)
T ss_pred eEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCCEEEE
Confidence 999999999999999999999999999999988877677888888876543222 36889999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++..
T Consensus 475 v~~iP~t~~GKi~r~~l~~~~ 495 (497)
T PRK06145 475 RDELPRNPSGKVLKRVLRDEL 495 (497)
T ss_pred eccCCCCCcccccHHHHHHHh
Confidence 999999999999999998643
No 40
>PRK09274 peptide synthase; Provisional
Probab=100.00 E-value=4.5e-32 Score=309.25 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=192.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcc-cccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSI-LEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++.+++.+.++ ++++++.||+||++.+++.......... .........++|+|+++++++
T Consensus 285 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 364 (552)
T PRK09274 285 IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVR 364 (552)
T ss_pred CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEE
Confidence 46889999999999999999999999986 4899999999999876543211100000 000111234789999999999
Q ss_pred EecCCC------------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 93 LVESDT------------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 93 i~d~~~------------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
|+|+.. +.++.|||+++|+.++.||+++|+.+...|..... +..||+|||+|+++++
T Consensus 365 ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~-----------g~~w~~TGDlg~~d~d 433 (552)
T PRK09274 365 IIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ-----------GDVWHRMGDLGYLDAQ 433 (552)
T ss_pred EEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCC-----------CCcEEEcCCEEEEccC
Confidence 997421 34567999999999999999999988877643211 2259999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhc
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSK 239 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 239 (829)
|.|+++||.||+||++|++|+|.|||++|.+||.|.+|+|++.++.. +..++++|++.++... .+.+.+.+++.+..
T Consensus 434 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~- 511 (552)
T PRK09274 434 GRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAA- 511 (552)
T ss_pred CcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHh-
Confidence 99999999999999999999999999999999999999999987754 4567788887765432 22344556655543
Q ss_pred CCCCCcCCeEEEeCcccCC--CCCCcchhhhccccc
Q 003331 240 LPLAMIPNRFVFMDSLPMT--SSGKVDYASLSASTS 273 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t--~~GKi~r~~l~~~~~ 273 (829)
++.++.|..++++++||+| ++|||+|++|++.+.
T Consensus 512 ~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~ 547 (552)
T PRK09274 512 HPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAA 547 (552)
T ss_pred cCCCcceeEEeccCCCCccccccccccHHHHHHHHH
Confidence 3566788999999999999 799999999987543
No 41
>PRK13390 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.1e-32 Score=304.45 Aligned_cols=232 Identities=21% Similarity=0.234 Sum_probs=197.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..++++|.++.||+++++++.+.+.+.+ +..+++.||+||++.++.... .. ......++|+|+++ .++++
T Consensus 267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~g-~~~i~ 336 (501)
T PRK13390 267 YDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDS-PD-------WLAHPGSVGRSVLG-DLHIC 336 (501)
T ss_pred CChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecc-hh-------hccCCCCcCCcccc-eEEEE
Confidence 3467999999999999999999998877 678999999999976443211 10 01134578999999 68999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ ++++.|||+|+|+.++.||+++|+.+.+.|.. ...+||+|||+++++++|.+++.||.|+
T Consensus 337 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~-------------~~~~w~~tGDl~~~~~dg~l~~~gR~~~ 403 (501)
T PRK13390 337 DDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHP-------------AHPFWTTVGDLGSVDEDGYLYLADRKSF 403 (501)
T ss_pred CCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhcc-------------CCCceEEcCceEEECCCCeEEEeecccc
Confidence 8766 35678999999999999999999988877642 1357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.+||.|.++++++.++...++.+++++++.......+...+++++++++.||.+++|..++.
T Consensus 404 ~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~ 483 (501)
T PRK13390 404 MIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEF 483 (501)
T ss_pred ceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999999999999999999999999999999887777788888887765433334457899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhc
Q 003331 252 MDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~ 269 (829)
+++||+|++||++|++|+
T Consensus 484 ~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 484 VDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eccCCCCCccceehhhcC
Confidence 999999999999999884
No 42
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=100.00 E-value=1.5e-31 Score=304.27 Aligned_cols=231 Identities=23% Similarity=0.330 Sum_probs=196.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+ +++++|.||+||++.+++...... ......++|+|+++++++++
T Consensus 309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~v~i~ 380 (547)
T PRK13295 309 RPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDP-------DERASTTDGCPLPGVEVRVV 380 (547)
T ss_pred CCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCc-------chhccCccccccCCcEEEEE
Confidence 5678999999999999999999999988 789999999999986544321110 01134578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+|+|++++.||+++|+.+... .++||+|||+++++++|.+++.||.||
T Consensus 381 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-----------------~~g~~~TGD~~~~~~~g~l~~~gR~~~ 443 (547)
T PRK13295 381 DADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-----------------ADGWFDTGDLARIDADGYIRISGRSKD 443 (547)
T ss_pred CCCCCCCCCCCCCeEEEEcCcccccccCCccccccC-----------------CCCCeecceEEEEcCCceEEEEeccCC
Confidence 8776 34677999999999999999999877643 146999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~ 250 (829)
+||++|+||+|.+||++|.+++.|.+++|++.++...++.+++++++...... ..+++++++++ .++.+++|..++
T Consensus 444 ~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~~l~~~~~P~~i~ 520 (547)
T PRK13295 444 VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL---DFEEMVEFLKAQKVAKQYIPERLV 520 (547)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC---CHHHHHHHHHhccCccccCCcEEE
Confidence 99999999999999999999999999999999887777788999988754322 23578888876 799999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+++||+|++||++|++|++.+.
T Consensus 521 ~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 521 VRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred EeccCCCCCCccccHHHHHHHHh
Confidence 99999999999999999987553
No 43
>PLN02246 4-coumarate--CoA ligase
Probab=99.98 E-value=9.3e-32 Score=305.36 Aligned_cols=236 Identities=24% Similarity=0.312 Sum_probs=199.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+.+++..+++.||+||++.+++....... ........++|+|+++++++++
T Consensus 295 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~ 370 (537)
T PLN02246 295 YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK----EPFPVKSGSCGTVVRNAELKIV 370 (537)
T ss_pred cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCC----CCccccCCccccccCCcEEEEe
Confidence 346899999999999999999999999988999999999999865543211000 0011234578999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.|
T Consensus 371 d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~~g~l~~~GR~d 435 (537)
T PLN02246 371 DPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTID---------------KDGWLHTGDIGYIDDDDELFIVDRLK 435 (537)
T ss_pred cCCCCCcCCCCCceEEEEECCchhccccCCchhhhhccc---------------CCCCeeecceEEEeCCCeEEEEeccc
Confidence 853 2 4567799999999999999999988877653 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.+||++|.++|.|.+++|++.++...+..++++++....... ..++|++++++.++.+++|..++
T Consensus 436 d~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~ 512 (537)
T PLN02246 436 ELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI---TEDEIKQFVAKQVVFYKRIHKVF 512 (537)
T ss_pred ceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCC---CHHHHHHHHHhhCcCccccceEE
Confidence 999999999999999999999999999999998877777788888887654332 23579999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhcccc
Q 003331 251 FMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
.+++||+|++||++|++|++.+
T Consensus 513 ~~~~~P~t~~GKi~r~~L~~~~ 534 (537)
T PLN02246 513 FVDSIPKAPSGKILRKDLRAKL 534 (537)
T ss_pred EeccCCCCCcchhhHHHHHHHH
Confidence 9999999999999999998754
No 44
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.98 E-value=6.6e-32 Score=307.85 Aligned_cols=234 Identities=22% Similarity=0.367 Sum_probs=199.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++++.+.+ +.++++.||+||++..++..... .....++|.|+++++++++
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~---------~~~~~~~G~~~~g~~~~i~ 371 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD---------RPKLQCLGIPTFGVDARVI 371 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCc---------CCCCCccCcccCCeEEEEE
Confidence 4568999999999999999999999988 68999999999998655432111 1134579999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.+..|||+|+|+.++.||+++++.+.+.|... ++.+||+|||+++++++|.++++||.|
T Consensus 372 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~------------~~~~~~~TGDl~~~~~~g~l~~~GR~~ 439 (546)
T PRK08314 372 DPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI------------DGKRFFRTGDLGRMDEEGYFFITDRLK 439 (546)
T ss_pred eCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhc------------CCCceEecCCEEEEcCCCcEEEEecch
Confidence 854 2 346679999999999999999999888887542 135799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.|||++|.++|+|.+++|++.++...+..+++++++....... ...+++++++++.|+.+++|..++
T Consensus 440 d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~P~~~~ 518 (546)
T PRK08314 440 RMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK-TTEEEIIAWAREHMAAYKYPRIVE 518 (546)
T ss_pred hhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC-CCHHHHHHHHHHhcccCCCCcEEE
Confidence 9999999999999999999999999999999988877778899999887653211 123688999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccc
Q 003331 251 FMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~ 271 (829)
++++||+|++||++|++|++.
T Consensus 519 ~v~~iP~t~~GKv~r~~L~~~ 539 (546)
T PRK08314 519 FVDSLPKSGSGKILWRQLQEQ 539 (546)
T ss_pred EecCCCCCCccceeHHHHHHH
Confidence 999999999999999999754
No 45
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.98 E-value=1.5e-31 Score=286.91 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=181.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+. ++++++.||+||++..|. ..|.|++++++++.
T Consensus 148 ~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~-------------------~~G~~~~g~~v~i~ 206 (358)
T PRK07824 148 AALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV-------------------YDGVPLDGVRVRVE 206 (358)
T ss_pred CCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC-------------------cCceeCCCCEEEec
Confidence 457899999999999999999988764 789999999999875332 24889999999984
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ |||+++|+.++.||+++++.+ .|. ..+||+|||++++ ++|.++++||.||+||
T Consensus 207 ~--------Gei~v~g~~~~~gY~~~~~~~--~~~---------------~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~ 260 (358)
T PRK07824 207 D--------GRIALGGPTLAKGYRNPVDPD--PFA---------------EPGWFRTDDLGAL-DDGVLTVLGRADDAIS 260 (358)
T ss_pred C--------CEEEEecCccccccCCCcccc--ccc---------------CCCceecccEEEE-eCCEEEEEeccCCeEE
Confidence 3 999999999999999987632 221 2469999999999 8999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++++...... ...++|++++++.|+.+++|..++++++
T Consensus 261 ~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~---~~~~~i~~~~~~~l~~~~~P~~i~~v~~ 337 (358)
T PRK07824 261 TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA---PTLEALRAHVARTLDRTAAPRELHVVDE 337 (358)
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC---cCHHHHHHHHHhhCccccCCCEEEEecC
Confidence 9999999999999999999999999999888877788888887765322 2346899999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccc
Q 003331 255 LPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~ 273 (829)
||+|++||++|++|++.+.
T Consensus 338 lP~t~~GKi~r~~L~~~~~ 356 (358)
T PRK07824 338 LPRRGIGKVDRRALVRRFA 356 (358)
T ss_pred CCCCCCccccHHHHHHHhh
Confidence 9999999999999987654
No 46
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.98 E-value=2.1e-31 Score=300.61 Aligned_cols=242 Identities=27% Similarity=0.454 Sum_probs=201.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++++.++++|+++++++.+++.+.++++++++.||+||++..++....... ........++|.|+++++++|
T Consensus 254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~~~vg~~~~~~~~~i 329 (502)
T TIGR01734 254 QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQE----ILDQYPRLPIGFAKPDMNLFI 329 (502)
T ss_pred cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcccc----ccccCCccccccccCCCEEEE
Confidence 4567899999999999999999999999999999999999998765443221110 011224567999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+++|+.++.||+++++.+...|... .+.+||+|||+|+++++ .++++||.+
T Consensus 330 ~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------------~~~~~~~TGDlg~~~~~-~l~i~GR~~ 396 (502)
T TIGR01734 330 MDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSH------------EGQPAYRTGDAGTITDG-QLFYQGRLD 396 (502)
T ss_pred ECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeC------------CCcEEEECCCEEEEECC-EEEEecccc
Confidence 98765 345679999999999999999999888777432 14579999999999876 999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEee-cCCceEEEEEEEEecCCCCch-HHHHHHHHHHHHhcCCCCCcCCe
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK-HQGELVILVAFIVLKEKKTSS-EIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|+||++|++|+|.+||+.+.++|.|.++++++.. .......+++++++....... ....+++++.+++.+|.+++|..
T Consensus 397 d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~ 476 (502)
T TIGR01734 397 FQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRK 476 (502)
T ss_pred CeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcE
Confidence 9999999999999999999999999999999865 444556788888877543322 23447899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++++||+|++||++|++|++..
T Consensus 477 ~~~v~~lP~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 477 FIYRDQLPLTANGKIDRKALAEEV 500 (502)
T ss_pred EEEccccCCCCCCcccHHHHHHhh
Confidence 999999999999999999998753
No 47
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.98 E-value=1.5e-31 Score=301.44 Aligned_cols=230 Identities=23% Similarity=0.305 Sum_probs=199.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++.+.+.+. ++++++.||+||++..++...... ......++|+|+++++++|+
T Consensus 261 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~p~~~~~~~i~ 331 (496)
T PRK06839 261 TNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEED-------ARRKVGSIGKPVLFCDYELI 331 (496)
T ss_pred CCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEeccccc-------ccccCCCCcccCCCceEEEE
Confidence 457899999999999999999999886 789999999999986544322111 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+|+|+.++.||+++++.+...| .++||+|||+++++++|.+++.||.||
T Consensus 332 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR~~d 395 (496)
T PRK06839 332 DENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI----------------QDGWLCTGDLARVDEDGFVYIVGRKKE 395 (496)
T ss_pred CCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH----------------cCCCeeecceEEEcCCCcEEEeccccc
Confidence 8776 356779999999999999999998877665 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||.+|++|+|.+||++|.++|+|.+++|++.++...+..+++++++++..... .+++++++++.|+.+++|..++.
T Consensus 396 ~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~ 472 (496)
T PRK06839 396 MIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI---EKDVIEHCRLFLAKYKIPKEIVF 472 (496)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCcEEEE
Confidence 999999999999999999999999999999998887778899999987654332 25799999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++|+|++||++|++|+++.
T Consensus 473 v~~~P~t~~GKi~r~~l~~~~ 493 (496)
T PRK06839 473 LKELPKNATGKIQKAQLVNQL 493 (496)
T ss_pred eccCCCCccccccHHHHHHHh
Confidence 999999999999999998654
No 48
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.98 E-value=1.6e-31 Score=303.00 Aligned_cols=237 Identities=18% Similarity=0.262 Sum_probs=193.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||++++....+ +.+.+ ++++++.||+||+++.+........ ........++|+|+++++++|+
T Consensus 283 ~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~g~~v~i~ 356 (540)
T PRK05857 283 ATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDG----SIVKIEAGAVGRPYPGVDVYLA 356 (540)
T ss_pred CcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCceeeecccccc----cccccccCCcCcccCCcEEEEE
Confidence 4678999999999999987775 44455 7899999999999854332211100 0001134679999999999999
Q ss_pred cCCCC---------CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 95 ESDTV---------KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 95 d~~~~---------~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
|+++. .++.|||+++|+.++.||+++++.+.+.|. ++||+|||+|+++++|++++
T Consensus 357 d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDlg~~d~~g~l~~ 420 (540)
T PRK05857 357 ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI----------------DGWVNTGDLLERREDGFFYI 420 (540)
T ss_pred CccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC----------------CCceeccceEEEcCCceEEE
Confidence 87653 245699999999999999999998888773 46999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhcCCCC
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLA 243 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~ 243 (829)
.||.||+||++|++|+|.|||.+|..||.|.+|+|++.++...+..++++++....... .+.+.+.+++.+++.++++
T Consensus 421 ~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 500 (540)
T PRK05857 421 KGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPM 500 (540)
T ss_pred eccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999998887666677777766543211 2334566777788889999
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 244 MIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|..+++++++|+|++||++|++|++.+.
T Consensus 501 ~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~ 530 (540)
T PRK05857 501 ARPSTIVIVTDIPRTQSGKVMRASLAAAAT 530 (540)
T ss_pred cCCeEEEEhhcCCCCCCcceeHHHHHHhhh
Confidence 999999999999999999999999987654
No 49
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.98 E-value=4.6e-32 Score=313.52 Aligned_cols=231 Identities=20% Similarity=0.238 Sum_probs=186.5
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++..... .....++|+|+++++++|+|.+
T Consensus 376 ~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~p~pg~~v~i~d~~ 445 (651)
T PLN02736 376 GRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDEG---------DNLSGHVGSPNPACEVKLVDVP 445 (651)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCCC---------CCCCCccCCccCceEEEEEEcc
Confidence 5899999999999999999998887 68899999999998665533211 1245679999999999999732
Q ss_pred -------CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 98 -------TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 98 -------~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+.+++.|||+|+||+++.||+++|+.|++.|. .++||+|||+|++++||.|+|+||.|
T Consensus 446 ~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~---------------~dgw~~TGDlg~~d~dG~l~i~GR~k 510 (651)
T PLN02736 446 EMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID---------------EDGWLHTGDIGLWLPGGRLKIIDRKK 510 (651)
T ss_pred ccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc---------------cCCCeeccceEEEcCCCcEEEEEech
Confidence 23445799999999999999999999988873 36899999999999999999999999
Q ss_pred CcEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC---------Cc---------hHHHHHH
Q 003331 171 RTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK---------TS---------SEIFLSS 231 (829)
Q Consensus 171 d~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------~~---------~~~~~~~ 231 (829)
|+||+ +|++|+|.|||++|.+||.|.+|+|++.. .+..++|+|++.... .. .+...+.
T Consensus 511 d~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (651)
T PLN02736 511 NIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDS---LNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAA 587 (651)
T ss_pred hheEcCCCcEechHHHHHHHhcCCCeeEEEEEecC---CCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHH
Confidence 99998 79999999999999999999999999842 345788999886421 00 0111222
Q ss_pred HHHHHH-----hcCCCCCcCCeEEEeCccc------CCCCCCcchhhhcccccccc
Q 003331 232 IKSWVS-----SKLPLAMIPNRFVFMDSLP------MTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 232 l~~~l~-----~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~~ 276 (829)
+.+.+. ..|+.|.+|++|+++++.| +|++||++|+++++.+...+
T Consensus 588 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 588 VLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred HHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 222222 2599999999999999886 79999999999988765433
No 50
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.98 E-value=1.4e-31 Score=312.78 Aligned_cols=234 Identities=21% Similarity=0.284 Sum_probs=188.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+.+.+.+ ++++++.||+||++..++.... ......++|+|+++++++++
T Consensus 476 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~---------~~~~~~svG~p~pg~~~~i~ 545 (718)
T PRK08043 476 YDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVP---------MAAKPGTVGRILPGMDARLL 545 (718)
T ss_pred ccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCC---------cccCCCCCCCcCCCCeeEEe
Confidence 4578999999999999999999999888 7899999999999866543211 01245689999999999999
Q ss_pred cCCCCCCCCCeEEEccccccccccCC--CCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSE--STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
|.++. +..|||+++|+.++.||+++ ++.+...+..... ....++||+|||+|++++||+++++||.||+
T Consensus 546 d~~~~-~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~--------~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~ 616 (718)
T PRK08043 546 SVPGI-EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR--------GEMERGWYDTGDIVRFDEQGFVQIQGRAKRF 616 (718)
T ss_pred cCCCC-CCceEEEEecCCccccccCCCCccccccccccccc--------ccccCCeEecCCEEEEcCCCcEEEEecCCCe
Confidence 76543 45699999999999999984 4432211110000 0013589999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCeEEE
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVF 251 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~ 251 (829)
||++|+||+|.|||+++.+|+.+.+++|++.++...++.+++++.. .. ...++++++++++ |+.|++|..+++
T Consensus 617 I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~---~~---~~~~~l~~~~~~~~l~~~~vP~~i~~ 690 (718)
T PRK08043 617 AKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD---SE---LTREKLQQYAREHGVPELAVPRDIRY 690 (718)
T ss_pred eEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC---cc---cCHHHHHHHHHhcCCCcccCCceEEE
Confidence 9999999999999999999998888888888777667777776531 11 1235788888887 999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++|||||++|++++.
T Consensus 691 v~~lP~t~~GKi~r~~L~~~~~ 712 (718)
T PRK08043 691 LKQLPLLGSGKPDFVTLKSMVD 712 (718)
T ss_pred ecccCcCCCCCcCHHHHHHHHh
Confidence 9999999999999999987654
No 51
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.98 E-value=2.2e-31 Score=303.68 Aligned_cols=229 Identities=23% Similarity=0.322 Sum_probs=197.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+.|.+.+ ++++++.||+||++.+++...... .....++|+|++++.++|+
T Consensus 330 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~p~~~~~v~iv 400 (562)
T PRK12492 330 LDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE--------LARLGTVGIPVPGTALKVI 400 (562)
T ss_pred ccccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc--------cccCCccceecCCCEEEEE
Confidence 4578999999999999999999998876 789999999999987655322110 1134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||+++|+.+.+.|. .++||+|||+++++++|.++|.||.||
T Consensus 401 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGD~g~~~~~G~l~i~GR~~~ 465 (562)
T PRK12492 401 DDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALD---------------AEGWFKTGDIAVIDPDGFVRIVDRKKD 465 (562)
T ss_pred CCCCCCCCCCCceEEEEeCCccccccccCchhhhhccc---------------CCCceecCcEEEECCCCeEEEecccCC
Confidence 98763 456799999999999999999998887763 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.+||.|.+++|++.++...++.+++++++..... ..+++++++++.++.+++|..++.
T Consensus 466 ~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~i~~~~~~~l~~~~~P~~i~~ 541 (562)
T PRK12492 466 LIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL----SVEELKAYCKENFTGYKVPKHIVL 541 (562)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777777888887654322 235788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|+++
T Consensus 542 ~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 542 RDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred eccCCCCCCCceeHHHHHhh
Confidence 99999999999999999864
No 52
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.98 E-value=1.1e-31 Score=304.40 Aligned_cols=234 Identities=23% Similarity=0.368 Sum_probs=196.0
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccc--cCCcEEEE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLP--ISNCDIVL 93 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p--~~~~~~~i 93 (829)
.+++||.++++|+++++++++.+.+.+ +.++++.||+||++..++......... ......+.|.+ .+++++++
T Consensus 293 ~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~----~~~~~~~~g~~g~~~g~~~~i 367 (534)
T PRK05852 293 KPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQ----TENPVVSTGLVGRSTGAQIRI 367 (534)
T ss_pred cCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCcccccc----ccCcccccccCCCCCCCeEEE
Confidence 468999999999999999999999988 688999999999986655322211000 00011223444 68999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +++..|||+|+|+.+++||+++++.+.+.|. ++||+|||++++++||++++.||.|
T Consensus 368 ~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~----------------~g~~~TGD~~~~d~dG~l~~~gR~~ 431 (534)
T PRK05852 368 VGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT----------------DGWLRTGDLGSLSAAGDLSIRGRIK 431 (534)
T ss_pred ECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhc----------------CCCcccCceEEEeCCCcEEEEecch
Confidence 98876 3566799999999999999999999887772 4699999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|.+|+|.+||++|.++|.|.+|+|++.++...+..++++++....... ..++|.++++++||.+++|..++
T Consensus 432 d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~---~~~~i~~~~~~~l~~~~~P~~i~ 508 (534)
T PRK05852 432 ELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP---TAEELVQFCRERLAAFEIPASFQ 508 (534)
T ss_pred hhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCC---CHHHHHHHHHHhcccccCCeEEE
Confidence 999999999999999999999999999999999887777788888887654322 23678999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++||++|++|++.+.
T Consensus 509 ~v~~iP~t~~GKi~r~~L~~~~~ 531 (534)
T PRK05852 509 EASGLPHTAKGSLDRRAVAEQFG 531 (534)
T ss_pred EhhhcCCCCCccccHHHHHHHhc
Confidence 99999999999999999987653
No 53
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.98 E-value=2.2e-31 Score=296.97 Aligned_cols=226 Identities=27% Similarity=0.399 Sum_probs=194.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..++++|.+++||+++++++++++.+.+ +.++++.||+||++..++... . ......++|+|++++.++|+
T Consensus 238 ~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~-------~~~~~~~vG~~~~g~~~~i~ 307 (471)
T PRK07787 238 RALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRA--D-------GERRPGWVGLPLAGVETRLV 307 (471)
T ss_pred ccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCC--C-------CcccCCcccccCCCcEEEEE
Confidence 4578999999999999999999999887 678999999999876443211 1 11234579999999999999
Q ss_pred cCCCCC----CC-CCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDTVK----PD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~~~----~~-~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++.+ +. .|||+++|+.++.||+++++.+.+.|. .++||+|||++++++||.++++||+
T Consensus 308 d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~---------------~~~~~~TGDlg~~~~dg~l~~~GR~ 372 (471)
T PRK07787 308 DEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFT---------------ADGWFRTGDVAVVDPDGMHRIVGRE 372 (471)
T ss_pred CCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhccc---------------CCCceecCceEEEcCCCCEEEeCCC
Confidence 877632 22 699999999999999999999888774 2579999999999999999999996
Q ss_pred -CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 170 -DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 170 -dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|++||++|++|+|.+||++|..++.|.+++|++.++...+..+++++++... ...+++++++++.++.+++|..
T Consensus 373 ~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~l~~~l~~~~~P~~ 447 (471)
T PRK07787 373 STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD-----VAADELIDFVAQQLSVHKRPRE 447 (471)
T ss_pred CceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC-----CCHHHHHHHHHhhcccccCCcE
Confidence 8999999999999999999999999999999998887777889999887332 1235788999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~ 270 (829)
++++++||+|++||++|++|++
T Consensus 448 i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 448 VRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEeccCCCCCCccccHHHhcc
Confidence 9999999999999999999975
No 54
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.97 E-value=2.1e-31 Score=302.94 Aligned_cols=233 Identities=23% Similarity=0.328 Sum_probs=197.4
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 98 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~ 98 (829)
+||.+++|||++++++++++.+.++++++++.||+||+++++........ ........++|.|+++++++++|++.
T Consensus 304 ~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~vG~~~~~~~v~i~d~~~ 379 (546)
T PLN02330 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK----GHGIAKKNSVGFILPNLEVKFIDPDT 379 (546)
T ss_pred eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccc----cccccccCccccccCCcEEEEEeCCC
Confidence 57999999999999999999999989999999999999765432211110 00012345799999999999998432
Q ss_pred ----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 99 ----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 99 ----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+.++.|||+++|++++.||+++++.+.+.|. .++||+|||+++++++|.++++||.||+||
T Consensus 380 ~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~ 444 (546)
T PLN02330 380 GRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTID---------------EDGWLHTGDIGYIDDDGDIFIVDRIKELIK 444 (546)
T ss_pred CccCCCCCceEEEEecchhhhhhccCccchhhhcc---------------CCCceecccEEEEeCCCcEEEEechHHhhh
Confidence 3567899999999999999999988876652 367999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.+++.|.+++|++.++...+..+++++++...... ..+++++++++.|+.+++|..++.+++
T Consensus 445 ~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~~~~v~~ 521 (546)
T PLN02330 445 YKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKE---SEEDILNFVAANVAHYKKVRVVQFVDS 521 (546)
T ss_pred cCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCC---CHHHHHHHHHHhcccccCceEEEEecc
Confidence 99999999999999999999999999998887777788888887754322 235789999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccc
Q 003331 255 LPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~ 273 (829)
+|+|++||++|++|++.+.
T Consensus 522 iP~t~~GK~~r~~L~~~~~ 540 (546)
T PLN02330 522 IPKSLSGKIMRRLLKEKML 540 (546)
T ss_pred CCCCCCcceeHHHHHHHHH
Confidence 9999999999999988664
No 55
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.97 E-value=3.5e-31 Score=300.12 Aligned_cols=231 Identities=24% Similarity=0.370 Sum_probs=196.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~ 92 (829)
...+++||.+++||+++++++.+.+.+.+ ++++++.||+||+...++.... + ......++|+|+ +++.++
T Consensus 296 ~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~---~-----~~~~~~~~G~p~~~~~~v~ 366 (536)
T PRK10946 296 RAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLDD---S-----DERIFTTQGRPMSPDDEVW 366 (536)
T ss_pred cccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCCC---c-----cccccccCCcccCCCceEE
Confidence 35578999999999999999999998888 7899999999997644332111 0 112346789998 789999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
++|+++ +.++.|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|.++++||.
T Consensus 367 i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~---------------d~~~~TGDl~~~d~~G~l~~~gR~ 431 (536)
T PRK10946 367 VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLVSIDPDGYITVVGRE 431 (536)
T ss_pred EECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhccc---------------CCceecCceEEECCCCcEEEeccc
Confidence 998765 35677999999999999999999998887742 579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~ 248 (829)
||+||++|++|+|.+||+.|.++|+|.+++++..++...+..+++++++... .. ..++++++++. +|.|++|..
T Consensus 432 ~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-~~----~~~l~~~~~~~~l~~~~~P~~ 506 (536)
T PRK10946 432 KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP-LK----AVQLRRFLREQGIAEFKLPDR 506 (536)
T ss_pred cceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC-CC----HHHHHHHHHhCCccccccCcE
Confidence 9999999999999999999999999999999999887767788888887654 22 24788888876 999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++.++++|+|++||++|++|++.+.
T Consensus 507 ~~~~~~iP~t~~GKv~r~~L~~~~~ 531 (536)
T PRK10946 507 VECVDSLPLTAVGKVDKKQLRQWLA 531 (536)
T ss_pred EEEeccCCCCCCCcccHHHHHHHHH
Confidence 9999999999999999999987643
No 56
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=6.8e-32 Score=311.82 Aligned_cols=256 Identities=18% Similarity=0.211 Sum_probs=193.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCcc---------------c--
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSI---------------L-- 72 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~---------------~-- 72 (829)
.++++||.+++||++++++++++|.+.++ ...++|.||+||++..++.......+.. .
T Consensus 303 ~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 382 (631)
T PRK07769 303 LDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPA 382 (631)
T ss_pred cchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCC
Confidence 46789999999999999999999998862 3469999999999866554321110000 0
Q ss_pred -ccCCCCccccccccCCcEEEEecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCc--CCCCC
Q 003331 73 -EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCS--VSCGS 145 (829)
Q Consensus 73 -~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~--~~~~~ 145 (829)
........++|+|+++..++|+|++ + +.++.|||+|+|++++.||+++++.|.+.|...+..+..... .....
T Consensus 383 ~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~ 462 (631)
T PRK07769 383 DAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDD 462 (631)
T ss_pred CCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccC
Confidence 0001123579999999999999853 2 356789999999999999999999999998642211000000 00123
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeE--EEEEEeec-----------------
Q 003331 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKH----------------- 205 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~--~~v~~~~~----------------- 205 (829)
.+||+|||+|+++ +|+|+|+||.||+||++|+||+|.|||++|.+ ||.|.+ ++|++.++
T Consensus 463 ~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~ 541 (631)
T PRK07769 463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKF 541 (631)
T ss_pred CCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccc
Confidence 5899999999984 99999999999999999999999999999996 899997 88888877
Q ss_pred --CCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCC-CC-cCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 206 --QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL-AM-IPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 206 --~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
+..++.+++++++..+... ...++|.++++++++. +. .|+.+++++ +||+|++|||+|++|++.+.
T Consensus 542 ~~~~~ge~~~a~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~ 613 (631)
T PRK07769 542 DPEDTSEQLVIVAERAPGAHK--LDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYL 613 (631)
T ss_pred ccCCCCccEEEEEEecCcccc--ccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHH
Confidence 4466778889888764211 1235788888888885 55 588888886 69999999999999987654
No 57
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.97 E-value=5.1e-31 Score=304.58 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=191.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||+++++...++.+.++..+++|.||+||++..+...... ......++|.|+++++++++
T Consensus 468 ~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~--------~~~~~g~~g~p~~g~~v~v~ 539 (728)
T PLN03052 468 LDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL--------QPQAFAAFSTPAMGCKLFIL 539 (728)
T ss_pred CChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC--------CCCCCCccccCCCCceEEEE
Confidence 4688999999999999999988888876546799999999987543321110 01134578999999999999
Q ss_pred cCCCCC---C--CCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ESDTVK---P--DEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~~~~~---~--~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+++.+ + +.|||+++++ +...+|+++. .....|...+.. .+.+||+|||+++++++|.++|+|
T Consensus 540 d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~---------~g~~~~~tGDl~~~d~dG~l~i~G 609 (728)
T PLN03052 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVF---------NGKILRRHGDIFERTSGGYYRAHG 609 (728)
T ss_pred CCCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCC---------CCCEEEecCceEEECCCCeEEEEe
Confidence 987743 3 2499999865 3345777764 233334322211 135699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHh-CCCCeeEEEEEEeecCCce-EEEEEEEEec--CCCC-chHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLR-GHPDVVDTAVVSHKHQGEL-VILVAFIVLK--EKKT-SSEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~-~~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|. .||.|.+++|++.+++..+ +.+++||+++ ++.. ..+++.+.+++++++.|++
T Consensus 610 R~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~ 689 (728)
T PLN03052 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP 689 (728)
T ss_pred cCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999995 7999999999999887554 7899999987 3332 3356777888889999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|..++++++||+|++|||+|+.|++.+.
T Consensus 690 ~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~ 720 (728)
T PLN03052 690 LFKVSAVVIVPSFPRTASNKVMRRVLRQQLA 720 (728)
T ss_pred ccCCCEEEEcCCCCCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 58
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.97 E-value=3.1e-31 Score=297.62 Aligned_cols=226 Identities=22% Similarity=0.302 Sum_probs=192.7
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+.+.++++|++++.++.+++.+.+|++++++.||+||++.++.... . .......++|+|++++.++|+|+
T Consensus 252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~-------~~~~~~~~~G~~~~~~~~~i~d~ 323 (487)
T PRK07638 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-E-------ESERRPNSVGRPFHNVQVRICNE 323 (487)
T ss_pred CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-c-------ccCCCCCCCCcccCCcEEEEECC
Confidence 345666788999999999999999999999999999999986654321 1 01235568999999999999987
Q ss_pred CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 97 DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 97 ~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
++ +++..|||+++|+.++.||+++++.+.+.+ .++||+|||+++++++|+++++||.||+|
T Consensus 324 ~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i 387 (487)
T PRK07638 324 AGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN----------------ADGWMTVRDVGYEDEEGFIYIVGREKNMI 387 (487)
T ss_pred CCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc----------------cCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence 76 356779999999999999999887654432 36799999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeC
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 253 (829)
|++|++|+|.+||++|.++|.|.+++|++.+++..+..+++++... ...+++++++++.++.+++|..+++++
T Consensus 388 ~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~-------~~~~~l~~~~~~~l~~~~~p~~i~~v~ 460 (487)
T PRK07638 388 LFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS-------ATKQQLKSFCLQRLSSFKIPKEWHFVD 460 (487)
T ss_pred EeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECC-------CCHHHHHHHHHHHhhcccCCcEEEEec
Confidence 9999999999999999999999999999988876667777777631 234678889999999999999999999
Q ss_pred cccCCCCCCcchhhhccccc
Q 003331 254 SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 254 ~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|+|++||++|++|++.+.
T Consensus 461 ~iP~t~~GKv~r~~L~~~~~ 480 (487)
T PRK07638 461 EIPYTNSGKIARMEAKSWIE 480 (487)
T ss_pred ccCCCCcccccHHHHHHHHh
Confidence 99999999999999987654
No 59
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.1e-31 Score=302.28 Aligned_cols=238 Identities=21% Similarity=0.303 Sum_probs=198.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+++.+.+ +..+++.||+||++..++..... .............++|.|+++++++++
T Consensus 277 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~g~~~~i~ 354 (528)
T PRK07470 277 YDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPA-LHDAEDGPDARIGTCGFERTGMEVQIQ 354 (528)
T ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchh-hccccccccceeeccCcccCCcEEEEE
Confidence 4578999999999999999999998887 57899999999998655432111 000000012244678999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||++.|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 355 d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~~~GR~dd 418 (528)
T PRK07470 355 DDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF----------------RDGWFRTGDLGHLDARGFLYITGRASD 418 (528)
T ss_pred CCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh----------------cCCcEecceeEEEccCCeEEEeCCccc
Confidence 87663 45679999999999999999998887766 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.+++.|.+++|++.++...+...+++++..+.... ..+++++++++.||.+++|..+++
T Consensus 419 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~P~~~~~ 495 (528)
T PRK07470 419 MYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPV---DEAELLAWLDGKVARYKLPKRFFF 495 (528)
T ss_pred eEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCC---CHHHHHHHHHHhhhcCCCCcEEEE
Confidence 99999999999999999999999999999998887666677788877654322 235788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|+.|++.+.
T Consensus 496 ~~~iP~t~~GKi~r~~l~~~~~ 517 (528)
T PRK07470 496 WDALPKSGYGKITKKMVREELE 517 (528)
T ss_pred eccCCCCCcccccHHHHHHHHH
Confidence 9999999999999999987654
No 60
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.97 E-value=6.4e-31 Score=297.76 Aligned_cols=227 Identities=26% Similarity=0.417 Sum_probs=193.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccC-CcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS-NCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~i 93 (829)
..+++||.+++||+++++++.+++.+.+ ++++++.||+||++..++.... .......++|+|++ +..+++
T Consensus 296 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--------~~~~~~~~~G~~~~~~~~v~i 366 (527)
T TIGR02275 296 YDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDD--------PAEIIFTTQGRPMSPDDEVRV 366 (527)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCCC--------ccccccccCCCCCCCCceEEE
Confidence 4578999999999999999999999887 7899999999997543322110 01123457899994 789999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++. .++.|||+++|+.++.||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 367 ~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~---------------~dg~~~TGDl~~~~~~g~l~~~gR~~ 431 (527)
T TIGR02275 367 VDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFD---------------AEGFYYTGDLVRLTPEGYIVVVGRAK 431 (527)
T ss_pred ECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcC---------------cCCCEEcCceEEEcCCccEEEEeccc
Confidence 987663 567799999999999999999998877763 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~ 249 (829)
|+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++..... ...+|+++++++ +|.+++|..+
T Consensus 432 d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~----~~~~l~~~l~~~~l~~~~~P~~i 507 (527)
T TIGR02275 432 DQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL----KAAQLRRFLRERGLAEYKLPDRV 507 (527)
T ss_pred ceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC----CHHHHHHHHHhCCCccccCCCEE
Confidence 99999999999999999999999999999999998877778889988765432 235788999875 9999999999
Q ss_pred EEeCcccCCCCCCcchhhhc
Q 003331 250 VFMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++||+|++||++|++|+
T Consensus 508 ~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 508 EFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEeccCCCCCccceeHHhcC
Confidence 99999999999999999874
No 61
>PRK08315 AMP-binding domain protein; Validated
Probab=99.97 E-value=4.5e-31 Score=301.92 Aligned_cols=235 Identities=21% Similarity=0.326 Sum_probs=200.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||+++.++++.+.+.++..++++.||+||++.+++...... .......++|+|++++.++++
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~------~~~~~~~~vG~p~~~~~v~i~ 385 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDD------PLEKRVTTVGRALPHLEVKIV 385 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCccc------chhhccCCCCccCCCcEEEEE
Confidence 35789999999999999999999999986677999999999987655332211 011245789999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+|+|+.++.||+++|..+...|. ..+||+|||+++++++|.++++||.|
T Consensus 386 d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~dg~~~~~GR~d 450 (559)
T PRK08315 386 DPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAID---------------ADGWMHTGDLAVMDEEGYVNIVGRIK 450 (559)
T ss_pred cCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCC---------------CCCCEEccceEEEcCCceEEEEeecc
Confidence 877 4 3567899999999999999999988776652 25799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||++|.+++.|.+++|+..++...+..+++++++...... ..+++++++++.+|.+++|..++
T Consensus 451 ~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~~i~ 527 (559)
T PRK08315 451 DMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL---TEEDVRDFCRGKIAHYKIPRYIR 527 (559)
T ss_pred ceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC---CHHHHHHHHHhhcccccCCcEEE
Confidence 999999999999999999999999999999998887666778888887654322 23578899999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++|+|++||++|.+|++.+.
T Consensus 528 ~v~~lP~t~~GK~~r~~L~~~~~ 550 (559)
T PRK08315 528 FVDEFPMTVTGKIQKFKMREMMI 550 (559)
T ss_pred EcccCCCCCCCceeHHHHHHHHH
Confidence 99999999999999999987643
No 62
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.97 E-value=6.5e-31 Score=295.21 Aligned_cols=232 Identities=25% Similarity=0.308 Sum_probs=195.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccc-cccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYF-DCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..+++||.+++||++++.+..+.+.+. ++++++.||+||++...... .+.. ......++|.|++++++++
T Consensus 249 ~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~vG~~~~~~~~~i 319 (488)
T PRK09088 249 AALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDV-------IRAKAGAAGIPTPTVQTRV 319 (488)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCccc-------ccccCCccccCCCCcEEEE
Confidence 456799999999999999988888764 68899999999998644321 1110 0113467999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+|+|+.++.||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 320 ~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i~GR~~ 384 (488)
T PRK09088 320 VDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFT---------------GDGWFRTGDIARRDADGFFWVVDRKK 384 (488)
T ss_pred ECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhc---------------CCCCeeecceEEEcCCCcEEEecccc
Confidence 98765 3456799999999999999999988877663 35899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||++|..+|.|.+++|++.+++..+...+++++++..... ..+++++++++.++.+++|..++
T Consensus 385 d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~ 461 (488)
T PRK09088 385 DMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPL---DLERIRSHLSTRLAKYKVPKHLR 461 (488)
T ss_pred ceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCC---CHHHHHHHHHhhCcCCCCCCEEE
Confidence 999999999999999999999999999999998876656677788877654321 24678999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++||++|++|++++.
T Consensus 462 ~~~~iP~t~~gKi~r~~l~~~~~ 484 (488)
T PRK09088 462 LVDALPRTASGKLQKARLRDALA 484 (488)
T ss_pred EcccCCCCCCCceeHHHHHHHHH
Confidence 99999999999999999987653
No 63
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.97 E-value=9.7e-31 Score=297.09 Aligned_cols=227 Identities=22% Similarity=0.334 Sum_probs=192.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++.+.+++.+.+ +++++|.||+||++.+++...... ......++|+|+++++++++
T Consensus 307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~g~~v~i~ 378 (538)
T TIGR03208 307 APVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDA-------LEKASTTDGRPLPGVEVKVI 378 (538)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccc-------hhhccCcccccCCCCEEEEE
Confidence 4578999999999999999999999888 689999999999986654322110 01124578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|++++.||+++|+.+.. ..++||+|||+++++++|.++++||.||
T Consensus 379 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-----------------~~~~~~~TGD~~~~~~~g~l~~~gR~~~ 441 (538)
T TIGR03208 379 DANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST-----------------DAEGWFDTGDLAFQDAEGYIRINGRSKD 441 (538)
T ss_pred CCCCCCCcCCCCcEEEEecCcccccccCCcccccc-----------------cCCCceeccceEEECCCCcEEEEeccCc
Confidence 8765 3456799999999999999999876541 1368999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~ 250 (829)
+||++|++|+|.+||++|.+||.|.+++|++.++...+..+++++++....... .+++++++++ .++.+++|..++
T Consensus 442 ~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~ 518 (538)
T TIGR03208 442 VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLE 518 (538)
T ss_pred eEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhcchhhccCCcEEE
Confidence 999999999999999999999999999999988877777888998886543222 3567888875 799999999999
Q ss_pred EeCcccCCCCCCcchhhhc
Q 003331 251 FMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++|+|++||++|++|+
T Consensus 519 ~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 519 VVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EeccCCCCCccccchHhhc
Confidence 9999999999999999986
No 64
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=6.7e-31 Score=300.59 Aligned_cols=235 Identities=21% Similarity=0.309 Sum_probs=201.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++++.+.++...+++.||+||++..++....... ......++|+|++++.++++
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~------~~~~~~~vG~p~~~~~~~i~ 387 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD------LERRVETVGRTQPHLEVKVV 387 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc------cccccCCCCccCCCCeEEEE
Confidence 357899999999999999999999999877789999999999876553221110 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||++++..+...|. ..+||+|||+++++++|.+++.||.||
T Consensus 388 d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGDl~~~~~dg~l~i~GR~~~ 452 (558)
T PRK12583 388 DPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESID---------------EDGWMHTGDLATMDEQGYVRIVGRSKD 452 (558)
T ss_pred CCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcC---------------CCCCeeccceEEECCCccEEEEecccc
Confidence 8875 3456799999999999999999988776652 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.+|+|.+||+.|.++|.|.+++|++.++...+..++++++....... ...++++++++.||.+++|..++.
T Consensus 453 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~i~~~~~~~L~~~~~P~~i~~ 529 (558)
T PRK12583 453 MIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA---SEEELREFCKARIAHFKVPRYFRF 529 (558)
T ss_pred eeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCC---CHHHHHHHHHhhcccCcCCcEEEE
Confidence 99999999999999999999999999999998887667788888887654322 236899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|++|++++.
T Consensus 530 v~~lP~t~sGK~~r~~L~~~~~ 551 (558)
T PRK12583 530 VDEFPMTVTGKVQKFRMREISI 551 (558)
T ss_pred eccCCCCCCCCccHHHHHHHHH
Confidence 9999999999999999987653
No 65
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.97 E-value=7.9e-31 Score=296.15 Aligned_cols=232 Identities=21% Similarity=0.284 Sum_probs=198.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++||+++++++++.+.+.+ +.++++.||+||++..++... .......++|.|++++++++
T Consensus 265 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---------~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 265 REAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY---------DGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred cccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc---------cccccCcccccCCCCcEEEE
Confidence 34578999999999999999999999987 678999999999876543211 01123467999999999999
Q ss_pred ec-CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d-~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+| +++ +.+..|||+|+|++++.||+++++.+.+.|.. .+||+|||+++++++|.++++||.
T Consensus 335 ~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGDl~~~~~~g~~~~~GR~ 399 (504)
T PRK07514 335 TDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRA---------------DGFFITGDLGKIDERGYVHIVGRG 399 (504)
T ss_pred EECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhccc---------------CCCeeecceEEEcCCccEEEeccc
Confidence 98 433 24567999999999999999999988887742 569999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++.++++|.+++|++.++...+..++++++........ .+++++.+++.++.+++|..+
T Consensus 400 ~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i 476 (504)
T PRK07514 400 KDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALD---EAAILAALKGRLARFKQPKRV 476 (504)
T ss_pred cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCC---HHHHHHHHHhhcccCCCCcEE
Confidence 99999999999999999999999999999999988876667788888876543322 357888999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.++++|+|++||++|++|++.+.
T Consensus 477 ~~v~~~p~t~~gK~~r~~l~~~~~ 500 (504)
T PRK07514 477 FFVDELPRNTMGKVQKNLLREQYA 500 (504)
T ss_pred EEeccCCCCCCcceeHHHHHHHHH
Confidence 999999999999999999987653
No 66
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.97 E-value=5.8e-31 Score=299.01 Aligned_cols=234 Identities=24% Similarity=0.359 Sum_probs=203.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||++++.++.+.+.+.+++..+++.||+||++.+++...... ......++|+|+++++++|+
T Consensus 283 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 355 (523)
T PRK08316 283 RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEE-------HLRRPGSAGRPVLNVETRVV 355 (523)
T ss_pred CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccc-------cccccCCcccCCCCcEEEEE
Confidence 45789999999999999999999999988899999999999987665432111 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...| .++||+|||+|+++++|.++++||.||
T Consensus 356 ~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~i~gR~~~ 419 (523)
T PRK08316 356 DDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF----------------RGGWFHSGDLGVMDEEGYITVVDRKKD 419 (523)
T ss_pred cCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh----------------hCCCeeccceEEEcCCceEEEeccccc
Confidence 8765 346679999999999999999998888776 357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.+++.|.+++|++.+++..+..++++++++..... ..+.+++++++.++.+++|..++.
T Consensus 420 ~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~ 496 (523)
T PRK08316 420 MIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV---TEDELIAHCRARLAGFKVPKRVIF 496 (523)
T ss_pred EEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999999999999999999999999999998888777788888888755322 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++|+|++||++|++|++.++.
T Consensus 497 v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 497 VDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred ecCCCCCCccceeHHHHHHHHHh
Confidence 99999999999999999987753
No 67
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=7.9e-31 Score=300.26 Aligned_cols=231 Identities=23% Similarity=0.336 Sum_probs=199.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+.+ +.++++.||+||++++++..... ......++|.|++++.++++
T Consensus 333 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~ 403 (573)
T PRK05605 333 VDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMS--------DDRRPGYVGVPFPDTEVRIV 403 (573)
T ss_pred CCchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcc--------cCCcCCccccCCCCCEEEEE
Confidence 3578999999999999999999998876 68899999999998766543211 11245689999999999999
Q ss_pred cCCC-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ +.+..|||+++|+.++.||+++++.+.+.|. .+||+|||+++++++|.++++||.
T Consensus 404 d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~g~~~TGD~~~~~~~g~l~i~gR~ 467 (573)
T PRK05605 404 DPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL----------------DGWFRTGDVVVMEEDGFIRIVDRI 467 (573)
T ss_pred cCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc----------------CCCcccCCEEEEcCCCcEEEEecc
Confidence 8654 3466799999999999999999988887762 359999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++..++.|.++++++.++...+..+++++++..+.... .++|++++++.|+.+++|..+
T Consensus 468 dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i 544 (573)
T PRK05605 468 KELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD---PEGLRAYCREHLTRYKVPRRF 544 (573)
T ss_pred ccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---HHHHHHHHHHhCccccCCcEE
Confidence 99999999999999999999999999999999988877778888988887653222 368999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.+++||+|++||++|++|++++.
T Consensus 545 ~~~~~iP~t~~GKi~r~~L~~~~~ 568 (573)
T PRK05605 545 YHVDELPRDQLGKVRRREVREELL 568 (573)
T ss_pred EEeccCCCCCcccccHHHHHHHHH
Confidence 999999999999999999987553
No 68
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.97 E-value=5.9e-31 Score=326.98 Aligned_cols=240 Identities=24% Similarity=0.319 Sum_probs=197.6
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccc-ccCCCCccccccccCCcEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL-EMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~ 92 (829)
..++++||.+++|||++++++.+.+++.+ ++++++.||+||++..++........... ........++|+|+++++++
T Consensus 894 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 972 (1146)
T PRK08633 894 PLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVR 972 (1146)
T ss_pred cccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEE
Confidence 45678999999999999999999999988 68999999999998766543211100000 11122466899999999999
Q ss_pred EecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 93 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
++|++. ++++.|||+++|+.++.||+++|+.+.+.|... ++++||+|||++++++||.++++||
T Consensus 973 i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------------~~~~~~~TGD~~~~~~~g~l~~~gR 1040 (1146)
T PRK08633 973 IVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI------------DGIGWYVTGDKGHLDEDGFLTITDR 1040 (1146)
T ss_pred EEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcC------------CCCCeEECCCEEEEcCCceEEEEec
Confidence 998643 457789999999999999999999998877431 1458999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCC--CeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCc
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHP--DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMI 245 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~ 245 (829)
.||+||++|++|+|.|||++|.+|| .+.+++|++.+++..++.++++++... . ..+++++++.+ .+|.+++
T Consensus 1041 ~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~--~----~~~~l~~~~~~~~l~~~~~ 1114 (1146)
T PRK08633 1041 YSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA--E----DVEELKRAIKESGLPNLWK 1114 (1146)
T ss_pred ccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc--c----CHHHHHHHHHhcCCCcccC
Confidence 9999999999999999999999998 466789999888877888888887621 1 12467777764 6999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|..++.++++|+|++||+||++|++..
T Consensus 1115 P~~i~~~~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1115 PSRYFKVEALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred CcEEEEecCcCCCCCCCCcHHHHHHHH
Confidence 999999999999999999999998754
No 69
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.1e-30 Score=296.64 Aligned_cols=233 Identities=21% Similarity=0.348 Sum_probs=199.4
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++||+++++++++.+.+.+++.++++.||+||++.+++...... ......++|+|++++.++++|++
T Consensus 290 ~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~d~~ 362 (542)
T PRK07786 290 LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGED-------AIRKLGSVGKVIPTVAARVVDEN 362 (542)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccc-------ccccCCCccccCCCceEEEECCC
Confidence 37999999999999999999999998999999999999986654322111 01234679999999999999876
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ +.+..|||++.|+.+++||+++++.+...| ..+||+|||+++++++|.++++||.||+||
T Consensus 363 ~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f----------------~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~ 426 (542)
T PRK07786 363 MNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF----------------AGGWFHSGDLVRQDEEGYVWVVDRKKDMII 426 (542)
T ss_pred CCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh----------------hCCcccccceEEEcCCceEEEEecccceEE
Confidence 5 345679999999999999999999888777 247999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++...... ...+++++++++.++.+++|..++++++
T Consensus 427 ~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~ 504 (542)
T PRK07786 427 SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA--LTLEDLAEFLTDRLARYKHPKALEIVDA 504 (542)
T ss_pred eCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC--CCHHHHHHHHHhhccCCCCCCEEEEecc
Confidence 99999999999999999999999999988776666677888877654321 2346889999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccccc
Q 003331 255 LPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~~ 275 (829)
||+|++||++|++|++.+...
T Consensus 505 iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 505 LPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred CCCCCcccccHHHHHHHHHhh
Confidence 999999999999999877644
No 70
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.97 E-value=3e-30 Score=291.60 Aligned_cols=242 Identities=29% Similarity=0.482 Sum_probs=203.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.++++|+++++.+.+++.+.+++..+++.||+||++..++...... . ........++|+|.++++++|
T Consensus 256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~~~~~~i 331 (503)
T PRK04813 256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITD--E--MLDQYKRLPIGYAKPDSPLLI 331 (503)
T ss_pred cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecc--c--ccccCCCCcccccCCCCEEEE
Confidence 456789999999999999999999999998899999999999976544322111 0 011234567999999999999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++. .++.|||+++|+.++.||+++++.+...|... .+.+||+|||++++ ++|.+++.||.|
T Consensus 332 ~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------------~g~~~~~tGD~~~~-~~g~~~~~GR~~ 398 (503)
T PRK04813 332 IDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTF------------DGQPAYHTGDAGYL-EDGLLFYQGRID 398 (503)
T ss_pred ECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccC------------CCceeEECCceEEe-eCCeEEEecccc
Confidence 987663 46679999999999999999999888877532 14579999999999 999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-CchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-TSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|++|+|.+||+.+.++|.|.+++|++.+++.....+++++++.... .....+.+++++++++.++.+++|..+
T Consensus 399 d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 478 (503)
T PRK04813 399 FQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKF 478 (503)
T ss_pred ceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEE
Confidence 9999999999999999999999999999999877766667888888876542 222345568999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+.++++|+|++||++|++|++.+
T Consensus 479 ~~~~~~P~t~~gKv~r~~l~~~~ 501 (503)
T PRK04813 479 IYRDSLPLTPNGKIDRKALIEEV 501 (503)
T ss_pred EEeccCCCCCCCCCcHHHHHHHh
Confidence 99999999999999999998754
No 71
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.4e-30 Score=298.09 Aligned_cols=253 Identities=21% Similarity=0.254 Sum_probs=202.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+||.+++|||++++.+.+++.+.+ ++++++.||+||++..++......... .........++|++.++++++++++
T Consensus 297 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~~~ 374 (576)
T PRK05620 297 RMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVS-GEARWAYRVSQGRFPASLEYRIVND 374 (576)
T ss_pred cCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccc-cccccccccccCCcCCceeEEEecC
Confidence 45899999999999999999998887 688999999999987665432211000 0000012347899999999999986
Q ss_pred CCC----CCCCCeEEEccccccccccCCCCCC----cccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 97 DTV----KPDEGEIYAGGLCLSNGYFSESTFM----PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 97 ~~~----~~~~Gel~i~g~~~~~gy~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
... .+..|||+++|+.++.||+++++.+ ...|...+..... .....++||+|||++++++||.++++||
T Consensus 375 g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~---~~~~~~g~~~TGD~~~~~~dg~l~~~GR 451 (576)
T PRK05620 375 GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN---DRFTADGWLRTGDVGSVTRDGFLTIHDR 451 (576)
T ss_pred CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhh---cccccCCcEecCceEEEcCCceEEEEec
Confidence 221 2456999999999999999999888 5566543321000 0011357999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++....+...++|+++++++||.+++|..
T Consensus 452 ~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 531 (576)
T PRK05620 452 ARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEY 531 (576)
T ss_pred hhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeE
Confidence 99999999999999999999999999999999999887777788888887765443334457899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++++||+|++||++|++|+++++.
T Consensus 532 i~~v~~~P~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 532 WTFVDEIDKTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred EEEeccCCCCCcccCcHHHHHHHHhc
Confidence 99999999999999999999887653
No 72
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=2e-30 Score=293.76 Aligned_cols=232 Identities=23% Similarity=0.321 Sum_probs=196.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++.+.+.++...++|.||+||++++++....... ......++|.|+++++++++
T Consensus 278 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~vG~~~~~~~~~i~ 351 (513)
T PRK07656 278 EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD------RKTVAGTIGTAIAGVENKIV 351 (513)
T ss_pred CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccc------ccccCCCccccCCCcEEEEE
Confidence 367899999999999999999999998843389999999999876654322110 01124689999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||++++..+...|. .++||+|||+++++++|.++++||.||
T Consensus 352 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~~~~~tGDl~~~~~~g~~~~~GR~~d 416 (513)
T PRK07656 352 NELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAID---------------ADGWLHTGDLGRLDEEGYLYIVDRKKD 416 (513)
T ss_pred CCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhc---------------cCCceeccceEEEcCCeeEEEEecccc
Confidence 87663 456799999999999999999887776552 357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.+|+|.+||+.|.++++|.+++|++.++...+..++++++.+..... ..+++++++++.||.+++|..++.
T Consensus 417 ~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~ 493 (513)
T PRK07656 417 MFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL---TEEELIAYCREHLAKYKVPRSIEF 493 (513)
T ss_pred eEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC---CHHHHHHHHHhhcccccCCCEEEE
Confidence 99999999999999999999999999999998877767788888887653222 235788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhcc
Q 003331 252 MDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~ 270 (829)
+++||+|++||++|++|++
T Consensus 494 v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 494 LDELPKNATGKVLKRALRE 512 (513)
T ss_pred ecCCCCCCccceeHHHHhc
Confidence 9999999999999999864
No 73
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=8.9e-31 Score=295.24 Aligned_cols=233 Identities=19% Similarity=0.242 Sum_probs=201.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++++++.+.+ +..+++.||+||++.+++... ... .....++|+|+ ++.++++|
T Consensus 260 ~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~-~~~-------~~~~~~~G~~~-~~~~~i~d 329 (502)
T PRK08276 260 DVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS-EDW-------LAHPGSVGKAV-LGEVRILD 329 (502)
T ss_pred CcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC-ccc-------cccCCCcceec-ccEEEEEC
Confidence 578999999999999999999999987 678999999999987554321 110 11345789999 88999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|.+++.||.|++
T Consensus 330 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~~~~~~~g~~~~~GR~~~~ 394 (502)
T PRK08276 330 EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNP---------------HGWVTVGDVGYLDEDGYLYLTDRKSDM 394 (502)
T ss_pred CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcC---------------CCceeecceEEEcCCcCEEEeccCcce
Confidence 7653 4567999999999999999999888877742 489999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
+|++|++|+|.+||.+|.++|.|.++++++..+...++.++++++++......+...++++..+++.++.+++|..++.+
T Consensus 395 i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~ 474 (502)
T PRK08276 395 IISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFE 474 (502)
T ss_pred EEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEe
Confidence 99999999999999999999999999999988877778899999987665444455668999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|+|++||++|++|++.+.
T Consensus 475 ~~lP~t~~GKi~r~~L~~~~~ 495 (502)
T PRK08276 475 DELPRTPTGKLYKRRLRDRYW 495 (502)
T ss_pred cCCCCCcccchhHHHHHHHHH
Confidence 999999999999999987654
No 74
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=1.9e-30 Score=292.94 Aligned_cols=233 Identities=18% Similarity=0.204 Sum_probs=198.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++.+.+.+.+ +..+++.||+||++.++... .... .....++|+|+++ .++++|
T Consensus 273 ~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~-~~~~-------~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 273 DLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACD-SEEW-------LAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred CccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEec-Cccc-------cccCCCcCCcccc-eEEEEC
Confidence 478999999999999999999999987 57899999999998755431 1110 1134578999999 688888
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|+ +..||+++++.+...|.. .++||+|||+++++++|.+++.||.||+
T Consensus 343 ~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~--------------~~~w~~TGD~g~~~~~g~l~~~gR~~~~ 407 (511)
T PRK13391 343 DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHP--------------DGTWSTVGDIGYVDEDGYLYLTDRAAFM 407 (511)
T ss_pred CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhcc--------------CCCEEecCCEEEECCCccEEEeccCCCE
Confidence 7663 456799999999 888999999888877642 2489999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
+|++|++|+|.+||++|.+||.|.+++|++.++...+..+++++++.......+...+++++++++.+|.+++|..+..+
T Consensus 408 i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~ 487 (511)
T PRK13391 408 IISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFE 487 (511)
T ss_pred EEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEe
Confidence 99999999999999999999999999999988877777888888876654333445678999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|+|++||++|+.|++.+.
T Consensus 488 ~~~P~t~~gKv~r~~l~~~~~ 508 (511)
T PRK13391 488 DELPRLPTGKLYKRLLRDRYW 508 (511)
T ss_pred ecCCCCCccceeHHHHHHHhh
Confidence 999999999999999987653
No 75
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.97 E-value=1.3e-30 Score=292.56 Aligned_cols=228 Identities=25% Similarity=0.402 Sum_probs=192.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
...+||.+++|||++++++++.+.+. ++++++.||+||++..+....... ......++|+|++++++++.+
T Consensus 252 ~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~p~~~~~~~i~~ 322 (483)
T PRK03640 252 YPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPED-------ALTKLGSAGKPLFPCELKIEK 322 (483)
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCccc-------ccccCCCcccccCCcEEEEec
Confidence 34699999999999999999988875 789999999999875443222111 112456899999999999987
Q ss_pred CCC--CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 96 SDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 96 ~~~--~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
+.. +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||+||++
T Consensus 323 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~~~~~tGDl~~~~~~g~l~~~GR~~~~i 386 (483)
T PRK03640 323 DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF----------------QDGWFKTGDIGYLDEEGFLYVLDRRSDLI 386 (483)
T ss_pred CCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH----------------hcCCeeccceEEEcCCCCEEEeecccCeE
Confidence 632 345679999999999999999998887776 24699999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeC
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 253 (829)
|++|.+|+|.+||+.+.+++.|.+++++..+++..+..++++++..... ..+++++++++.|+.+++|..++.++
T Consensus 387 ~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~~~ 461 (483)
T PRK03640 387 ISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV-----TEEELRHFCEEKLAKYKVPKRFYFVE 461 (483)
T ss_pred EeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC-----CHHHHHHHHHHhccCCCCCcEEEEeC
Confidence 9999999999999999999999999999888776666777777754321 23578889999999999999999999
Q ss_pred cccCCCCCCcchhhhccccc
Q 003331 254 SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 254 ~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|+|++||++|++|++.+.
T Consensus 462 ~iP~t~~gK~~r~~l~~~~~ 481 (483)
T PRK03640 462 ELPRNASGKLLRHELKQLVE 481 (483)
T ss_pred CCCCCCccceeHHHHHHHHh
Confidence 99999999999999987653
No 76
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.7e-30 Score=296.87 Aligned_cols=230 Identities=21% Similarity=0.266 Sum_probs=196.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+++.+.+ ++.+++.||+||++.++...... ......++|+|++++.+++++
T Consensus 321 ~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~~ 391 (563)
T PRK06710 321 DISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLW--------EKRVPGSIGVPWPDTEAMIMS 391 (563)
T ss_pred ChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCccc--------ccccCCccCCCCCCCeEEEEE
Confidence 468999999999999999999998877 68899999999998654321110 011345789999999999997
Q ss_pred CCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 96 SDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 96 ~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++. +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 392 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~----------------~~g~~~TGD~~~~~~~g~~~~~GR~dd 455 (563)
T PRK06710 392 LETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL----------------QDGWLHTGDVGYMDEDGFFYVKDRKKD 455 (563)
T ss_pred CCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc----------------ccCcccccceEEEcCCCcEEEeecccc
Confidence 433 356679999999999999999998887665 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.||+|.+||++|.++|.|.+++|++.++...+..++++++..+..... .+++++++++.++.+++|..+++
T Consensus 456 ~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~ 532 (563)
T PRK06710 456 MIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS---EEELNQFARKYLAAYKVPKVYEF 532 (563)
T ss_pred EEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCCcEEEE
Confidence 999999999999999999999999999999988877777888888877653322 35788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|++|++...
T Consensus 533 v~~iP~t~~GKi~r~~L~~~~~ 554 (563)
T PRK06710 533 RDELPKTTVGKILRRVLIEEEK 554 (563)
T ss_pred cccCCCCccchhhHHHHHHHHh
Confidence 9999999999999999987654
No 77
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.7e-30 Score=292.83 Aligned_cols=235 Identities=23% Similarity=0.310 Sum_probs=198.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+.+.+.+ +..+++.||+||++..++....... .........++|+|++++.++++
T Consensus 278 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~---~~~~~~~~~~~G~p~~g~~v~i~ 353 (524)
T PRK06188 278 RDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDH---DPDDPKRLTSCGRPTPGLRVALL 353 (524)
T ss_pred CCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhc---cccccccCCccccccCCcEEEEE
Confidence 4578999999999999999988888887 5679999999999765554322111 00112245679999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||++++..+...| ..+||+|||+++++++|.++++||.|+
T Consensus 354 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR~~~ 417 (524)
T PRK06188 354 DEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF----------------RDGWLHTGDVAREDEDGFYYIVDRKKD 417 (524)
T ss_pred cCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh----------------cCCceeecceEEEcCCccEEEEecccc
Confidence 87763 46679999999999999999988877666 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++++|.+++|++.++...+..+++++++....... .+++++++++.++.+++|..+++
T Consensus 418 ~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~ 494 (524)
T PRK06188 418 MIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAPKQVDF 494 (524)
T ss_pred ceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEE
Confidence 999999999999999999999999999999988776677888888887543322 36788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++.+
T Consensus 495 v~~~P~t~~gKi~r~~L~~~~ 515 (524)
T PRK06188 495 VDSLPLTALGKPDKKALRARY 515 (524)
T ss_pred ecCCCCCccccccHHHHHHHH
Confidence 999999999999999998765
No 78
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.97 E-value=2.7e-30 Score=295.21 Aligned_cols=229 Identities=23% Similarity=0.279 Sum_probs=194.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.++++
T Consensus 326 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~vG~~~~~~~v~i~ 396 (560)
T PRK08751 326 IDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTL--------KEYNGSIGLPIPSTDACIK 396 (560)
T ss_pred cchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccc--------cccCCCcCccCCCceEEEE
Confidence 3467999999999999999999999877 688999999999987554322110 1134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.+++||+++++.+.+.|. .++||+|||+++++++|.++++||.||
T Consensus 397 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~~g~l~i~GR~~d 461 (560)
T PRK08751 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD---------------ADGWLHTGDIARMDEQGFVYIVDRKKD 461 (560)
T ss_pred CCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccc---------------cCCCccccceEEEcCCceEEEEeechh
Confidence 87653 456799999999999999999998877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|..++.|.+++|++.++...++.++++++...... ..+++++++++.++.+++|..+++
T Consensus 462 ~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~P~~v~~ 537 (560)
T PRK08751 462 MILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL----TAEDVKAHARANLTGYKQPRIIEF 537 (560)
T ss_pred heeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCC----CHHHHHHHHHHhhhhccCCeEEEE
Confidence 9999999999999999999999999999999888766666777766543221 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|++.
T Consensus 538 v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 538 RKELPKTNVGKILRRELRDA 557 (560)
T ss_pred hhhCCCCccccccHHHHHHh
Confidence 99999999999999999764
No 79
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=3.5e-30 Score=293.91 Aligned_cols=229 Identities=23% Similarity=0.280 Sum_probs=196.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.+++++|.++.||+++++.+.++|.+.+ ++++++.||+||++.+++..... ......++|.|++++.++++
T Consensus 324 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~vG~p~~g~~v~i~ 394 (557)
T PRK07059 324 LDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD--------ATEFSGTIGLPLPSTEVSIR 394 (557)
T ss_pred CCchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC--------CCCcCCcccCccCCcEEEEE
Confidence 3567999999999999999999999887 78999999999998766543211 01234679999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.||
T Consensus 395 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~~~~~GR~~~ 459 (557)
T PRK07059 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT---------------ADGFFRTGDVGVMDERGYTKIVDRKKD 459 (557)
T ss_pred CCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcc---------------cCCceecCcEEEEcCCCcEEEeccccc
Confidence 8765 3466799999999999999999988877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++++|.+++|++.++...++.++++++...... ..+++++++++.++.+++|..+++
T Consensus 460 ~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~P~~i~~ 535 (557)
T PRK07059 460 MILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL----TEEDVKAFCKERLTNYKRPKFVEF 535 (557)
T ss_pred ceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777778888887654322 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
++++|+|++||++|+.|++.
T Consensus 536 v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 536 RTELPKTNVGKILRRELRDG 555 (557)
T ss_pred eccCCCCcccceeHHHHHhh
Confidence 99999999999999999753
No 80
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.97 E-value=5.8e-30 Score=290.07 Aligned_cols=241 Identities=22% Similarity=0.327 Sum_probs=199.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++++.+.+.+++..+++.||+||++..+.. .... ......++|+|+++++++++
T Consensus 271 ~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~-~~~~-------~~~~~~~vG~~~~~~~~~i~ 342 (515)
T TIGR03098 271 SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYL-PPEE-------VDRRPDSIGKAIPNAEVLVL 342 (515)
T ss_pred CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEec-cccc-------ccCCCCCcceecCCCEEEEE
Confidence 467899999999999999999999999988899999999998753322 1100 11245689999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++++. .+..|||+++|+.++.||+++++.+...|...+... .....+.+||+|||+++++++|.+++.||.||
T Consensus 343 ~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d 418 (515)
T TIGR03098 343 REDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRP----GELHLPELAVWSGDTVRRDEEGFLYFVGRRDE 418 (515)
T ss_pred CCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcc----ccccccccceeccceEEEcCCceEEEEecccc
Confidence 87653 456799999999999999999998887775432100 00011346899999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++|.|.+++|++.++...++.++++++....... ..+++++++++.++.+++|..+++
T Consensus 419 ~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~ 495 (515)
T TIGR03098 419 MIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL---DRAALLAECRARLPNYMVPALIHV 495 (515)
T ss_pred ceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCC---CHHHHHHHHHhhCccccCCCEEEE
Confidence 99999999999999999999999999999998887777888888876543322 235789999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcc
Q 003331 252 MDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~ 270 (829)
+++||+|++||++|++|++
T Consensus 496 v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 496 RQALPRNANGKIDRKALAA 514 (515)
T ss_pred eccCCCCCCCCCcHHHhcc
Confidence 9999999999999999864
No 81
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.97 E-value=6.9e-30 Score=289.48 Aligned_cols=225 Identities=21% Similarity=0.315 Sum_probs=190.8
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
..+++|.++.|| +++.+.+.+.+.+ +++++|.||+||++..++... . .....++|.|+++++++|+|
T Consensus 292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~-~---------~~~~~~vG~~~~~~~~~i~d 358 (542)
T PRK06155 292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTH-G---------SQRPGSMGRLAPGFEARVVD 358 (542)
T ss_pred ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCC-C---------CCCCCCcCccCCCceEEEEC
Confidence 356888877655 5788899998887 789999999999987654311 0 12456789999999999998
Q ss_pred CCCC---CCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 96 SDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+++. .+..|||+++|+ +++.||+++++.+.+.| .++||+|||+++++++|.++|+||.
T Consensus 359 ~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dG~l~i~GR~ 422 (542)
T PRK06155 359 EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW----------------RNLWFHTGDRVVRDADGWFRFVDRI 422 (542)
T ss_pred CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh----------------cCCcEeccceEEEcCCceEEEEecC
Confidence 7653 456799999998 79999999988887766 3579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||++|.++|+|.+++|++.++...+..+.+++++...... ...++++++++.++.+++|..+
T Consensus 423 ~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~~~~P~~i 499 (542)
T PRK06155 423 KDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL---EPVALVRHCEPRLAYFAVPRYV 499 (542)
T ss_pred CCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC---CHHHHHHHHHhhCcCccCCcEE
Confidence 9999999999999999999999999999999998887666778888887654332 2367899999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++++|+|++||++|++|++..
T Consensus 500 ~~~~~iP~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 500 EFVAALPKTENGKVQKFVLREQG 522 (542)
T ss_pred EEeccCCCCcccceeHHHHHhhc
Confidence 99999999999999999998754
No 82
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=4.3e-30 Score=291.45 Aligned_cols=236 Identities=22% Similarity=0.284 Sum_probs=192.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc-c-CCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE-M-STLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~-~-~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.++++|+++++.+++++.+.+ ++.+++.||+||++..++............ . ......++|+|++++.++
T Consensus 290 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~ 368 (539)
T PRK07008 290 LRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMK 368 (539)
T ss_pred CCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEE
Confidence 4578999999999999999999998888 789999999999986554322110000000 0 001235789999999999
Q ss_pred EecCCCCCC-----CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTVKP-----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~~~-----~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
++|+++.+. ..|||+++|+.++.||++++. ..| .++||+|||+++++++|.++++|
T Consensus 369 i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~----------------~~g~~~TGD~~~~~~dg~l~~~G 429 (539)
T PRK07008 369 IVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL----------------VDGWFPTGDVATIDADGFMQITD 429 (539)
T ss_pred EECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh----------------cCCCcccCceEEEcCCCcEEEee
Confidence 998766321 359999999999999999872 222 14699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|++|+|.+||+++..+|.|.++++++.++...+..++++++..+.... ..++++++++++++.+++|.
T Consensus 430 R~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~ 506 (539)
T PRK07008 430 RSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEV---TREELLAFYEGKVAKWWIPD 506 (539)
T ss_pred cccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCcc---CHHHHHHHHHhhcccccCCe
Confidence 999999999999999999999999999999999998887666677778776654322 23679999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.++.+++||+|++||++|++|++.+.
T Consensus 507 ~i~~v~~lP~t~sgKi~r~~l~~~~~ 532 (539)
T PRK07008 507 DVVFVDAIPHTATGKLQKLKLREQFR 532 (539)
T ss_pred EEEEecCCCCCCccceeHHHHHHHHH
Confidence 99999999999999999999987654
No 83
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.97 E-value=1.1e-30 Score=300.69 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=185.2
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec-C
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-S 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~ 96 (829)
++||.+++||+++++.+ +++.+.++++.+++.||+||+++.++..... +.....++|+|+++++++|+| +
T Consensus 386 ~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~gsvG~p~pg~evki~d~~ 456 (666)
T PLN02614 386 GNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPD--------ELDMLGTVGPPVPNVDIRLESVP 456 (666)
T ss_pred CcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccc--------cCCcCCcccCcCCceEEEEeeec
Confidence 68999999999999875 6677777668999999999987544321110 011346899999999999987 2
Q ss_pred C-----CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 97 D-----TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 97 ~-----~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
+ .++++.|||+|+|++++.|||++|+.|++.|. ++||+|||+|++|+||+|+|+||+||
T Consensus 457 ~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~----------------dGw~~TGDlg~~d~dG~l~i~gR~kd 520 (666)
T PLN02614 457 EMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI----------------DGWLHTGDVGEWQPNGSMKIIDRKKN 520 (666)
T ss_pred ccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc----------------cCCcccceEEEEcCCCCEEEEEcchh
Confidence 2 23467899999999999999999999998882 47999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-----------Cc------hHHHHHHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-----------TS------SEIFLSSIK 233 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------~~------~~~~~~~l~ 233 (829)
+||+ +|++|+|.|||++|.+||.|.+++|++.+... .++|+|++.... .. .+...+.+.
T Consensus 521 ~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (666)
T PLN02614 521 IFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFIL 597 (666)
T ss_pred ceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHH
Confidence 9997 79999999999999999999999999976432 588888875321 00 112233333
Q ss_pred HHH-----HhcCCCCCcCCeEEEeCc-c-----cCCCCCCcchhhhcccccccccccc
Q 003331 234 SWV-----SSKLPLAMIPNRFVFMDS-L-----PMTSSGKVDYASLSASTSFTISAQH 280 (829)
Q Consensus 234 ~~l-----~~~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~~~~ 280 (829)
+.+ ++.|+.+.+++.|+++++ | .+|+++|+.|+.+.+.|+..+...+
T Consensus 598 ~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly 655 (666)
T PLN02614 598 GELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY 655 (666)
T ss_pred HHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHH
Confidence 333 356999999999998874 3 4899999999999988765554433
No 84
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.97 E-value=9.3e-30 Score=287.34 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=195.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++.+.+.+ ++.+++.||+||++.+++... .. ......++|.|++++.++++
T Consensus 268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~~i~ 338 (509)
T PRK12406 268 YDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATS-ED-------ALSHPGTVGKAAPGAELRFV 338 (509)
T ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCc-cc-------ccccCCCcCccCCCcEEEEE
Confidence 3578999999999999999999999987 678999999999987554211 10 01134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccc-cccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSN-GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~-gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+++. .+..|||+++|+.+.. +|+++++.+...+ .++||+|||+++++++|.+++.||.|
T Consensus 339 d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~GR~~ 402 (509)
T PRK12406 339 DEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID----------------RGGFITSGDVGYLDADGYLFLCDRKR 402 (509)
T ss_pred CCCCCCCCCCCceEEEEECCccccccccCCchhccccc----------------CCCCeEEccEEEEcCCceEEEeeccc
Confidence 87663 4567999999998765 8999888776543 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||+.|.++|.|.++++++.++...+..+++++++...... ..+++++.+++.++.+++|..++
T Consensus 403 d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~~i~ 479 (509)
T PRK12406 403 DMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL---DEADIRAQLKARLAGYKVPKHIE 479 (509)
T ss_pred ceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEE
Confidence 999999999999999999999999999999998887666778888887654321 23678899999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++|+|++||++|++|++.+.
T Consensus 480 ~~~~iP~t~~GK~~r~~L~~~~~ 502 (509)
T PRK12406 480 IMAELPREDSGKIFKRRLRDPYW 502 (509)
T ss_pred EeccCCCCCccchhHHHHHHHHH
Confidence 99999999999999999986543
No 85
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.97 E-value=2e-30 Score=298.20 Aligned_cols=253 Identities=19% Similarity=0.224 Sum_probs=184.9
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCCc-------cc-----------
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPS-------IL----------- 72 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~~-------~~----------- 72 (829)
++++|| +++||+++++++.+++.+.+ |...+++.||+||++..++.......+. ..
T Consensus 316 ~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (612)
T PRK12476 316 DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAAD 394 (612)
T ss_pred chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCC
Confidence 578999 99999999999999999876 2346999999999876554322110000 00
Q ss_pred ccCCCCccccccccCCcEEEEecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccC--c-CCCCC
Q 003331 73 EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC--S-VSCGS 145 (829)
Q Consensus 73 ~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~--~-~~~~~ 145 (829)
........++|+|+++++++|+|++ + +.++.|||+++|+.++.||+++|+.|.+.|...+.....+. . ....+
T Consensus 395 ~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~ 474 (612)
T PRK12476 395 APNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474 (612)
T ss_pred CCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCC
Confidence 0001123578999999999999876 4 34667999999999999999999999998863211000000 0 00113
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeE--EEEEEeecCCceEEEEEEEEecCCC
Q 003331 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKHQGELVILVAFIVLKEKK 222 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~ 222 (829)
++||+|||+|++ .+|.|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|++.+++. ++.+++++++..+.
T Consensus 475 ~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~ 552 (612)
T PRK12476 475 GTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT 552 (612)
T ss_pred CCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence 579999999987 599999999999999999999999999999985 899998 6667777665 56788888877543
Q ss_pred CchHHHHHHHHHHHHhcCC-CCCc-CCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 223 TSSEIFLSSIKSWVSSKLP-LAMI-PNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~-~~~~-p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
.. ...++|.+++++.++ .+++ |..+++++ +||+|++|||+|++|++.+.
T Consensus 553 ~~--~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~ 605 (612)
T PRK12476 553 SR--ADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYL 605 (612)
T ss_pred cc--ccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHH
Confidence 21 112344445555544 3566 57777776 69999999999999997653
No 86
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.97 E-value=3.8e-30 Score=297.84 Aligned_cols=236 Identities=20% Similarity=0.306 Sum_probs=186.3
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec-C
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-S 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~ 96 (829)
++||.+++||+++++++.+.+...+ ++.+++.||+||+++.++..... .....++|.|+++++++|+| +
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~---------~~~~gsvG~p~p~~evkivd~~ 489 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWD---------DTSVGRVGPPLPCCYVKLVSWE 489 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcc---------cCCCCccCCCCCceEEEEeecc
Confidence 6899999999999999988777666 78999999999998766543211 12446799999999999998 3
Q ss_pred CC------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 97 DT------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 97 ~~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
++ .+++.|||+|+|++++.||+++|+.|.+.|.... ++.+||+|||+|++++||+|+|+||+|
T Consensus 490 ~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~-----------~G~~W~~TGDig~~d~dG~l~i~gR~k 558 (696)
T PLN02387 490 EGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDE-----------RGMRWFYTGDIGQFHPDGCLEIIDRKK 558 (696)
T ss_pred ccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhcccc-----------CCCceeecCceEEECCCCcEEEEEccc
Confidence 33 2345799999999999999999999999885321 134699999999999999999999999
Q ss_pred CcEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------------Cc------hHHHHHH
Q 003331 171 RTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------------TS------SEIFLSS 231 (829)
Q Consensus 171 d~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------~~------~~~~~~~ 231 (829)
|+||+ +|++|+|.+||++|.+||.|.+++|++.+.. ..++|+|++.... .. .+...++
T Consensus 559 d~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (696)
T PLN02387 559 DIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKE 635 (696)
T ss_pred ceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHH
Confidence 99998 6999999999999999999999999987633 2577888875321 00 1122233
Q ss_pred HHHHH-----HhcCCCCCcCCeEEEeCccc------CCCCCCcchhhhccccccccc
Q 003331 232 IKSWV-----SSKLPLAMIPNRFVFMDSLP------MTSSGKVDYASLSASTSFTIS 277 (829)
Q Consensus 232 l~~~l-----~~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~~~ 277 (829)
+.+.+ +..|+.+.+|..|.++.+-. +|++.|+.|+.+.+.|+..+.
T Consensus 636 i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~ 692 (696)
T PLN02387 636 VQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLK 692 (696)
T ss_pred HHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHH
Confidence 33333 34699999999999987643 688889999999988765543
No 87
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.97 E-value=7e-30 Score=284.06 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=184.9
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+||.+++||+++++.+.+.+.+. +.++++.||+||++..++.... ....++|+|++++.+++++
T Consensus 239 ~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~-----------~~~~~~G~~~~~~~~~i~~- 304 (458)
T PRK09029 239 PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA-----------DGLAGVGSPLPGREVKLVD- 304 (458)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC-----------CCCCCCCCCCCCCEEEEeC-
Confidence 4589999999999999999988764 7899999999999864432211 0224589999999999985
Q ss_pred CCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEEC
Q 003331 97 DTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKIN 176 (829)
Q Consensus 97 ~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~ 176 (829)
|||+++|+.++.||+++++.+...+ .++||+|||+|+++ +|.++++||.||+||++
T Consensus 305 -------gel~v~g~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~ 360 (458)
T PRK09029 305 -------GEIWLRGASLALGYWRQGQLVPLVN----------------DEGWFATRDRGEWQ-NGELTILGRLDNLFFSG 360 (458)
T ss_pred -------CEEEEecCceeeeeecCcccccccc----------------CCCccCCCCcEEEe-CCEEEEecccccceeeC
Confidence 8999999999999999887764221 46899999999999 99999999999999999
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCccc
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLP 256 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP 256 (829)
|++|+|.|||++|.++|.|.+++|++.++...++.++++++.... ...++|+++++++||.|++|..++.++++|
T Consensus 361 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p 435 (458)
T PRK09029 361 GEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSE-----AAVVNLAEWLQDKLARFQQPVAYYLLPPEL 435 (458)
T ss_pred CEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcc-----cCHHHHHHHHHhhchhccCCeEEEEecccc
Confidence 999999999999999999999999999888777788888876632 234689999999999999999999999999
Q ss_pred CCCCCCcchhhhccccc
Q 003331 257 MTSSGKVDYASLSASTS 273 (829)
Q Consensus 257 ~t~~GKi~r~~l~~~~~ 273 (829)
+|++||++|+.|+++..
T Consensus 436 ~t~~gKi~r~~L~~~~~ 452 (458)
T PRK09029 436 KNGGIKISRQALKEWVA 452 (458)
T ss_pred cCcCCCcCHHHHHHHHH
Confidence 99999999999987654
No 88
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.97 E-value=1e-29 Score=286.83 Aligned_cols=230 Identities=26% Similarity=0.370 Sum_probs=196.9
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+.++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++.... ......++|+|++++.++++|
T Consensus 276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---------~~~~~~~~G~~~~g~~v~i~d 345 (508)
T TIGR02262 276 DQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLP---------GDVRYGTSGKPVPGYRLRLVG 345 (508)
T ss_pred ccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCc---------cCCCCCCcCCCCCCcEEEEEC
Confidence 456899999999999999999999988 6899999999999865442111 112345789999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +++..|||+++|+.++.||+++++.+...| ..+||+|||+++++++|.++++||.||+
T Consensus 346 ~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~gR~~d~ 409 (508)
T TIGR02262 346 DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF----------------QGEWTRSGDKYVRNDDGSYTYAGRTDDM 409 (508)
T ss_pred CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh----------------hcCceeccceEEEcCCccEEEeccccce
Confidence 665 345679999999999999999998887766 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|.+|+|.+||+.|.++++|.++++++.++......+.+++++.......+...+++++.++++|+.+++|..++.+
T Consensus 410 i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~ 489 (508)
T TIGR02262 410 LKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFV 489 (508)
T ss_pred eeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEe
Confidence 99999999999999999999999999999987766666778888877654433445678999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccc
Q 003331 253 DSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~ 271 (829)
+++|+|++||++|++|+++
T Consensus 490 ~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 490 DDLPKTATGKIQRFKLREG 508 (508)
T ss_pred cCCCCCCCCcEehhhccCC
Confidence 9999999999999998753
No 89
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.6e-29 Score=288.53 Aligned_cols=229 Identities=26% Similarity=0.294 Sum_probs=195.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.++++
T Consensus 322 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~ 392 (560)
T PRK08974 322 LDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL--------DYYSGSIGLPVPSTEIKLV 392 (560)
T ss_pred CCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC--------cccCCccccCcCCCEEEEE
Confidence 3467999999999999999999998876 789999999999987665432211 1234579999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 393 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~l~i~GR~~d 456 (560)
T PRK08974 393 DDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI----------------KDGWLATGDIAVMDEEGFLRIVDRKKD 456 (560)
T ss_pred CCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh----------------hcCCcccCCEEEEcCCceEEEEecccc
Confidence 8765 345679999999999999999998887766 247999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+|+++|.+|+|.+||++|.++|.|.+++|++.++...+..++++++...... ..+++++++.+.++.+++|..++.
T Consensus 457 ~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~l~~~l~~~l~~~~~P~~~~~ 532 (560)
T PRK08974 457 MILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSL----TEEELITHCRRHLTGYKVPKLVEF 532 (560)
T ss_pred eEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCC----CHHHHHHHHHhhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777777777776543221 235788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++..
T Consensus 533 ~~~lP~t~~GK~~r~~l~~~~ 553 (560)
T PRK08974 533 RDELPKSNVGKILRRELRDEA 553 (560)
T ss_pred hhhCCCCCCCcEeHHHHHHHH
Confidence 999999999999999998643
No 90
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.97 E-value=1.8e-29 Score=285.86 Aligned_cols=225 Identities=21% Similarity=0.264 Sum_probs=191.5
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+.+|+.++++ +++++...+.+.+.+ ++++++.||+||++..++..... ......++|.|+++++++++|+
T Consensus 287 ~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~g~~~~i~d~ 356 (517)
T PRK08008 287 QHCLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPG--------DKRRWPSIGRPGFCYEAEIRDD 356 (517)
T ss_pred cccceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCcc--------ccccCCccccCCCCcEEEEECC
Confidence 4578888775 578999999988887 78999999999998655432211 1123457999999999999987
Q ss_pred CC---CCCCCCeEEEcc---ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 97 DT---VKPDEGEIYAGG---LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 97 ~~---~~~~~Gel~i~g---~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
++ +.+..|||+++| +++++||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 357 ~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~~~~~GR~~ 421 (517)
T PRK08008 357 HNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE---------------ADGWLHTGDTGYVDEEGFFYFVDRRC 421 (517)
T ss_pred CCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc---------------CCCCeeccceEEECCCCcEEEeeccc
Confidence 76 345679999997 6899999999999888774 25799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||+++.+++.|.+++|++.++...+..+.++++++...... .+++++++++.++.+++|..++
T Consensus 422 d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~ 498 (517)
T PRK08008 422 NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLS---EEEFFAFCEQNMAKFKVPSYLE 498 (517)
T ss_pred ceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCcEEE
Confidence 9999999999999999999999999999999998877777888999887653322 3578999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhc
Q 003331 251 FMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++|+|++||++|+.|+
T Consensus 499 ~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 499 IRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EeccCCCCCccceehhhcC
Confidence 9999999999999999874
No 91
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=1.8e-29 Score=285.20 Aligned_cols=223 Identities=22% Similarity=0.322 Sum_probs=189.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||+++++++++|.+.+ +..+++.||+||++..+.... .. ......++|+|+++++++|+|
T Consensus 290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~~i~d 360 (516)
T PRK13383 290 PLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATP-AD-------LRDAPETVGKPVAGCPVRILD 360 (516)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceeccc-cc-------cccCCCcccCCCCCcEEEEEC
Confidence 468999999999999999999999988 678999999999985543211 10 011345789999999999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. +++.|||+++|+.++.||++++.. .+ .++||+|||+++++++|+++++||.||+
T Consensus 361 ~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~----------------~~g~~~TGDl~~~d~~G~l~i~GR~~~~ 421 (516)
T PRK13383 361 RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV----------------VDGMTSTGDMGYLDNAGRLFIVGREDDM 421 (516)
T ss_pred CCCCCCCCCCceEEEEecCcccccccCCchh---he----------------ecCceecceeEEEcCCccEEEeccccce
Confidence 7663 456799999999999999986531 11 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|++|+|.+||++|.++|.|.++++++.++...+..+.+++++...... ..++++++++++++.+++|..++.+
T Consensus 422 i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~v 498 (516)
T PRK13383 422 IISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV---DAAQLRDYLKDRVSRFEQPRDINIV 498 (516)
T ss_pred EEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEEEe
Confidence 9999999999999999999999999999998887777788888887754322 2357899999999999999999999
Q ss_pred CcccCCCCCCcchhhhc
Q 003331 253 DSLPMTSSGKVDYASLS 269 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~ 269 (829)
++||+|++||++|++|+
T Consensus 499 ~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 499 SSIPRNPTGKVLRKELP 515 (516)
T ss_pred CCCCCCCCCcCcHHHhC
Confidence 99999999999999874
No 92
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.97 E-value=1.3e-29 Score=289.06 Aligned_cols=238 Identities=22% Similarity=0.357 Sum_probs=184.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccC----CCcccc-cCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR----LPSILE-MSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----~~~~~~-~~~~~~~~~G~p~~~~~ 90 (829)
..++++.+++||+++++.+.+.+.+ + +.++++.||+||+++.++...... .+.... .........+.|+++++
T Consensus 298 ~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ 375 (579)
T PLN03102 298 PRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVD 375 (579)
T ss_pred CcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceE
Confidence 3457889999999999999988876 4 789999999999986443221110 000000 00001122234444444
Q ss_pred EEEecCCC----CC--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 003331 91 IVLVESDT----VK--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 164 (829)
Q Consensus 91 ~~i~d~~~----~~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 164 (829)
+++.+. +. +..|||+++|+.++.||+++|+.+.+.| .++||+|||+|+++++|.++
T Consensus 376 --i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f----------------~~gw~~TGDlg~~d~dG~l~ 437 (579)
T PLN03102 376 --VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF----------------KHGWLNTGDVGVIHPDGHVE 437 (579)
T ss_pred --EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh----------------ccCceecCceEEEcCCCeEE
Confidence 444322 11 2469999999999999999999888877 24799999999999999999
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchH-------HHHHHHHHHHH
Q 003331 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE-------IFLSSIKSWVS 237 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~l~~~l~ 237 (829)
|+||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..+..+++++++..+....+ ....+++++++
T Consensus 438 i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (579)
T PLN03102 438 IKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCR 517 (579)
T ss_pred EEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877778899998875432110 12457999999
Q ss_pred hcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 238 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++||.|++|..++++++||+|++||++|++|++.+.
T Consensus 518 ~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~ 553 (579)
T PLN03102 518 ENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAK 553 (579)
T ss_pred hhcccccCCeEEEEcccCCCCCcccccHHHHHHHHH
Confidence 999999999999999999999999999999987654
No 93
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.97 E-value=8.1e-30 Score=290.40 Aligned_cols=234 Identities=24% Similarity=0.326 Sum_probs=194.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+.+.+. ++++++.||+||++..+....... ......++|.|++++.++++
T Consensus 299 ~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 369 (547)
T PRK06087 299 ADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDP-------LSRFMHTDGYAAAGVEIKVV 369 (547)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcc-------hhhcCCcCCccCCCceEEEE
Confidence 457899999999999999999888765 789999999999986554321100 01123468999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.||
T Consensus 370 d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i~GR~~d 434 (547)
T PRK06087 370 DEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALD---------------EEGWYYSGDLCRMDEAGYIKITGRKKD 434 (547)
T ss_pred cCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhC---------------CCCCcCcCceEEECCCCCEEEEecchh
Confidence 8766 3456799999999999999999988877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHH-hcCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~ 250 (829)
+||++|++|+|.+||++|.++|.|.++++++.++...++.+++++++...... ...+++.+++. +.++.+++|..+.
T Consensus 435 ~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~l~~~~~P~~i~ 512 (547)
T PRK06087 435 IIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHS--LTLEEVVAFFSRKRVAKYKYPEHIV 512 (547)
T ss_pred hhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCC--CCHHHHHHHHHhccccccCCCeEEE
Confidence 99999999999999999999999999999998887777788888887653211 12356777664 5799999999999
Q ss_pred EeCcccCCCCCCcchhhhcccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++||+|++||++|++|++....
T Consensus 513 ~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 513 VIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred EeccCCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999999876543
No 94
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=313.35 Aligned_cols=229 Identities=18% Similarity=0.207 Sum_probs=188.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+.+.+.+ +++++|.||+||++..++.... ......++|+|++++++++
T Consensus 903 ~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~vG~p~~g~~~~~ 972 (1140)
T PRK06814 903 PYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTP---------MHNKAGTVGRLLPGIEYRL 972 (1140)
T ss_pred cccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCC---------CCCCCCcCCccCCCCeEEE
Confidence 45678999999999999999999999887 7899999999999876553211 0124568999999999999
Q ss_pred ecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 94 VESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 94 ~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+.++ .++.|||+++|+.++.||+++++... +.. ..++||+|||++++++||.++++||.||+|
T Consensus 973 ~~~~~-~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~-------------~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i 1036 (1140)
T PRK06814 973 EPVPG-IDEGGRLFVRGPNVMLGYLRAENPGV--LEP-------------PADGWYDTGDIVTIDEEGFITIKGRAKRFA 1036 (1140)
T ss_pred eecCC-CCCceEEEEeCCCcchhhcCCCCCCc--ccc-------------CCCCeEecCCEEEECCCCeEEEEecccCee
Confidence 86442 45679999999999999998764221 110 146899999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEEEe
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFVFM 252 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~ 252 (829)
|++|+||+|.|||++|.+|+.+.+++|++.+++..++.+++++... . ...+++++++++ .++.+++|..++.+
T Consensus 1037 ~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~---~---~~~~~l~~~~~~~~l~~~~~P~~i~~v 1110 (1140)
T PRK06814 1037 KIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTAS---D---ATRAAFLAHAKAAGASELMVPAEIITI 1110 (1140)
T ss_pred eeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCC---C---cCHHHHHHHHHHcCCCcccCCcEEEEe
Confidence 9999999999999999999999999999988877777776665421 1 123567777876 49999999999999
Q ss_pred CcccCCCCCCcchhhhcccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++|+|++||+||++|++....
T Consensus 1111 ~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1111 DEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred cCcCCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999876543
No 95
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.97 E-value=4.2e-30 Score=296.39 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=183.8
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC-
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES- 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~- 96 (829)
.+||.+++||+++++++. +|.+.++...+++.||+||+++.++...... .....++|+|+++++++++|.
T Consensus 383 ~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--------~~~~gsvG~p~p~~ev~i~d~~ 453 (660)
T PLN02861 383 GRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIANV--------FSMVGTVGVPMTTIEARLESVP 453 (660)
T ss_pred CcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeeccccc--------CCCCCCccCccCceEEEEEEcc
Confidence 589999999999999975 4666664557999999999986554321110 113468999999999999872
Q ss_pred -CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 97 -DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 97 -~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++ ..++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|++|+||.|+|+||+||
T Consensus 454 ~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~----------------dGw~~TGDlg~~d~dG~l~i~GR~kd 517 (660)
T PLN02861 454 EMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI----------------DGWFHTGDIGEWQPNGAMKIIDRKKN 517 (660)
T ss_pred ccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh----------------ccCcccCceEEECCCCcEEEEecccc
Confidence 12 2345799999999999999999999998882 57999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-----------CchH------HHHHHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-----------TSSE------IFLSSIK 233 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------~~~~~l~ 233 (829)
+||+ +|++|+|.+||++|.+||.|.+|+|++.+.. ..++|+|++.... .... .....+.
T Consensus 518 ~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~---~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (660)
T PLN02861 518 IFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFE---SFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYIL 594 (660)
T ss_pred ceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCc---ceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHH
Confidence 9998 7999999999999999999999999987632 4688888875320 0111 1222333
Q ss_pred HHHHh-----cCCCCCcCCeEEEeC-cc-----cCCCCCCcchhhhcccccccccccc
Q 003331 234 SWVSS-----KLPLAMIPNRFVFMD-SL-----PMTSSGKVDYASLSASTSFTISAQH 280 (829)
Q Consensus 234 ~~l~~-----~l~~~~~p~~~~~~~-~l-----P~t~~GKi~r~~l~~~~~~~~~~~~ 280 (829)
+.+.+ .++.+..+..+.+.+ .| ++|+++|+.|+.+.+.|+..++..+
T Consensus 595 ~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY 652 (660)
T PLN02861 595 DELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652 (660)
T ss_pred HHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 44432 488999999998865 46 7999999999999988876554443
No 96
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1e-29 Score=288.85 Aligned_cols=237 Identities=26% Similarity=0.360 Sum_probs=200.6
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++++.+.+.+ ++++++.||+||++..++....... .........++|.|++++.++|
T Consensus 277 ~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i 352 (521)
T PRK06187 277 FVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQ---LPGQWTKRRSAGRPLPGVEARI 352 (521)
T ss_pred ccCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccc---cccccccCCccccccCCeEEEE
Confidence 35678999999999999999999999988 8899999999999866554321110 0000124568999999999999
Q ss_pred ecCCCC---C--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 94 VESDTV---K--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 94 ~d~~~~---~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+++. . +..|||++.|+.++.||+++++.+.+.|. .+||+|||+++++++|.+++.||
T Consensus 353 ~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~----------------~~~~~tGD~~~~~~~g~~~~~GR 416 (521)
T PRK06187 353 VDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID----------------GGWLHTGDVGYIDEDGYLYITDR 416 (521)
T ss_pred ECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh----------------CCceeccceEEEcCCCCEEEeec
Confidence 987763 3 56799999999999999999887777663 35999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|.+|+|.+||+.|.++++|.+++|++.+++..+..+++++++....... ..++++++++.++.+++|..
T Consensus 417 ~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~ 493 (521)
T PRK06187 417 IKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD---AKELRAFLRGRLAKFKLPKR 493 (521)
T ss_pred ccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCceE
Confidence 999999999999999999999999999999999988776677888888876554322 35788899999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++++||+|++||++|.+|++++.
T Consensus 494 i~~v~~~P~t~~gK~~r~~l~~~~~ 518 (521)
T PRK06187 494 IAFVDELPRTSVGKILKRVLREQYA 518 (521)
T ss_pred EEEccCCCCCCCCCeeHHHHHHHHh
Confidence 9999999999999999999988764
No 97
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.8e-29 Score=283.34 Aligned_cols=222 Identities=21% Similarity=0.262 Sum_probs=182.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
.++||. ++||+++++.+ +++.+.+ ++++++.||+||++..++... .....++|.|+++ ++++++
T Consensus 266 ~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----------~~~~~~~g~~~~~--~~i~~~ 329 (529)
T PRK07867 266 DNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP-----------DTPPGALGPLPPG--VAIVDP 329 (529)
T ss_pred ccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC-----------CCCCCCcCCCCCC--EEEEEC
Confidence 457884 56899888764 6677777 689999999999986544211 1133568999998 556653
Q ss_pred C-C---CCCC------------CCeEEE-ccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc
Q 003331 97 D-T---VKPD------------EGEIYA-GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 159 (829)
Q Consensus 97 ~-~---~~~~------------~Gel~i-~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~ 159 (829)
+ + +.+. .|||++ +|+.++.||+++++.+.+.| ..+||+|||++++++
T Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGD~~~~~~ 393 (529)
T PRK07867 330 DTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM----------------RGGVYWSGDLAYRDA 393 (529)
T ss_pred CCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh----------------cCCeEeeccEEEEeC
Confidence 2 2 2344 799999 99999999999999887766 257999999999999
Q ss_pred CCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc
Q 003331 160 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK 239 (829)
Q Consensus 160 ~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 239 (829)
+|.++++||.||+||++|+||+|.|||++|.++|.|.+++|++.+++..++.+++++++..+.... .++++++++++
T Consensus 394 ~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~ 470 (529)
T PRK07867 394 DGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD---PDAFAEFLAAQ 470 (529)
T ss_pred CCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC---HHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999888788888988887553322 35677777665
Q ss_pred --CCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 240 --LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 240 --l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.+++|..++++++||+|++||++|++|+++..
T Consensus 471 ~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~ 506 (529)
T PRK07867 471 PDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV 506 (529)
T ss_pred ccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcC
Confidence 9999999999999999999999999999987653
No 98
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.97 E-value=2.4e-29 Score=285.93 Aligned_cols=228 Identities=23% Similarity=0.316 Sum_probs=192.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+ +.++++.||+||++.+++...... .....++|.|++++.++++
T Consensus 309 ~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~v~ 379 (541)
T TIGR03205 309 RDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG--------PDKPGSIGLMLPGIELDVV 379 (541)
T ss_pred cCccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC--------CCCCCCcceeccCceeEEE
Confidence 3567999999999999999999988877 689999999999987665432111 1134578999999998775
Q ss_pred --cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 --ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 --d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ +.++.|||+++|++++.||+++|+.+.+.|. .+||+|||+++++++|.++++||.
T Consensus 380 ~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~~~~~TGD~~~~~~~g~l~i~GR~ 443 (541)
T TIGR03205 380 SLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV----------------GDRFLTGDIGYMDTDGYFFLVDRK 443 (541)
T ss_pred ecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc----------------cCCcccCceEEEcCCceEEEEccc
Confidence 3332 3456799999999999999999998887773 358999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++.+++.|.+++|++.+++..+..+++++++...... ...++++++++++|+.+++|..+
T Consensus 444 ~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i 521 (541)
T TIGR03205 444 KDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP--FSLDELRAFLAGKLGKHELPVAV 521 (541)
T ss_pred cCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc--CCHHHHHHHHHhhcccccCCcEE
Confidence 9999999999999999999999999999999998887667788888887754321 12357888999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhc
Q 003331 250 VFMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++||+|++||++|++|+
T Consensus 522 ~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 522 EFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EEeccCCCCcccceeHhhcC
Confidence 99999999999999999874
No 99
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.96 E-value=1e-27 Score=258.24 Aligned_cols=286 Identities=22% Similarity=0.360 Sum_probs=228.5
Q ss_pred CCCcEEEEEEcCCcee-----eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc
Q 003331 504 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH 578 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~-----~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~ 578 (829)
.+++++|+++++.... .++.+ .++.+|+++.++.|+++|..||+++|++..+..+...|++. ++.+|+++.
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~~ 113 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAV--AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD--GGLVFVGTE 113 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEE--ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc--CCEEEEEcC
Confidence 4688999998876542 34444 35689999999999999999999999999888777777665 488999999
Q ss_pred CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCccee---eeeeeec
Q 003331 579 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA---SLCITSA 655 (829)
Q Consensus 579 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~---s~~~~~~ 655 (829)
++.++++|.++|+++|+....+...++|.+.+ +.+++++.+|.++++|.++ |+.+|+.+...+... ...+...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAAT--GERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred CCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCC--CceeeEEccCCCceeecCCCCCEEE
Confidence 99999999999999999988887778888865 8999999999999999988 999999877554321 1112223
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 656 NRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
++.+++++.+|.++++| .+|+.+|+.....+ +.+.| ...++.+|+++.+|.++++|.++|+++|.
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p---~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP---VVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc---EEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 57899999899999999 89999998764322 11223 22467999999999999999999999998
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccceE
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPVM 802 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~ 802 (829)
.+... ...+. ..++.+|+++.+|.|+++|..+| +..|.. .+.+...++|++
T Consensus 267 ~~~~~--~~~p~-------------~~~~~vyv~~~~G~l~~~d~~tG-------------~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 267 RDASS--YQGPA-------------VDDNRLYVTDADGVVVALDRRSG-------------SELWKNDELKYRQLTAPAV 318 (377)
T ss_pred eccCC--ccCce-------------EeCCEEEEECCCCeEEEEECCCC-------------cEEEccccccCCccccCEE
Confidence 87432 12222 23789999999999999999876 444544 556667789999
Q ss_pred ECCEEEEeeeCCeEEEEecccccccc
Q 003331 803 IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 803 ~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.++.||+++.+|.||++|..+|++.+
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 99999999999999999999998754
No 100
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.96 E-value=2.5e-29 Score=278.36 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=182.7
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++|||++++++.+.+.+. ++.+++.||+||++..++....... ....++|.|++++++++..++
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~G~~~~~~~~~i~~~~ 288 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEML--------HARPDVGRPLAGREIKIKVDN 288 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccc--------ccccCCCccCCCcEEEEEeCC
Confidence 689999999999999999988765 7899999999999876553322110 111248999999999984332
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
. ...|||++.|+.++.||+++++.+...| ..+||+|||+++++++|.+++.||.||+||++|
T Consensus 289 ~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G 350 (436)
T TIGR01923 289 K--EGHGEIMVKGANLMKGYLYQGELTPAFE----------------QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGG 350 (436)
T ss_pred C--CCceEEEEECCccchhhCCChhhhhhhh----------------cCCCeeccceEEEcCCCCEEEeccccCeEEeCC
Confidence 2 3679999999999999999877665443 357999999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003331 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
++|+|.+||++|.+++.|.+++++..++...+..+++++++... ...+++.+++++.++.+++|..++++++||+
T Consensus 351 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~ 425 (436)
T TIGR01923 351 ENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD-----ISQAKLIAYLTEKLAKYKVPIAFEKLDELPY 425 (436)
T ss_pred EeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC-----CCHHHHHHHHHHhhhCCCCCeEEEEecCCCC
Confidence 99999999999999999999999988776656677888877653 1235788889999999999999999999999
Q ss_pred CCCCCcchhhh
Q 003331 258 TSSGKVDYASL 268 (829)
Q Consensus 258 t~~GKi~r~~l 268 (829)
|++||++|++|
T Consensus 426 t~~GK~~r~~L 436 (436)
T TIGR01923 426 NASGKILRNQL 436 (436)
T ss_pred CCCCceecccC
Confidence 99999999875
No 101
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.96 E-value=1.2e-27 Score=258.22 Aligned_cols=284 Identities=19% Similarity=0.346 Sum_probs=223.5
Q ss_pred CCCcEEEEEEcCCcee-----eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeee
Q 003331 504 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVD 567 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~-----~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~ 567 (829)
.+++..|+.++++.+. .++++. ++.||+++.++.|+++|.+||+++|+++.... +...|++.
T Consensus 42 ~~~~~~W~~~~g~g~~~~~~~~sPvv~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~ 119 (394)
T PRK11138 42 FTPTTVWSTSVGDGVGDYYSRLHPAVA--YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA 119 (394)
T ss_pred CCcceeeEEEcCCCCccceeeeccEEE--CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE
Confidence 4577888888765431 244553 46899999999999999999999999876541 12234444
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++.||+++.++.++++|.+||+.+|+....+...++|++.+ +.+|+++.+|.++++|+++ |+.+|+++...+..
T Consensus 120 --~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 --GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESD--GAVKWTVNLDVPSL 193 (394)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccC--CCEeeeecCCCCcc
Confidence 48899999999999999999999999998888888898876 8999999999999999998 99999997654322
Q ss_pred -----eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeE
Q 003331 648 -----ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 648 -----~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
.++.+ .++.+++++.+|.++++| .+|+.+|+.+...+ +...|. ..++.+|+++.+|.+
T Consensus 194 ~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~---v~~~~vy~~~~~g~l 268 (394)
T PRK11138 194 TLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV---VVGGVVYALAYNGNL 268 (394)
T ss_pred cccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE---EECCEEEEEEcCCeE
Confidence 23333 467899999999999999 99999999765432 123342 347899999999999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 790 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 790 (829)
+++|.++|+.+|+.+..... .+ ...++.+|+++.+|.|+++|..+| +..|+.
T Consensus 269 ~ald~~tG~~~W~~~~~~~~--~~-------------~~~~~~vy~~~~~g~l~ald~~tG-------------~~~W~~ 320 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSVN--DF-------------AVDGGRIYLVDQNDRVYALDTRGG-------------VELWSQ 320 (394)
T ss_pred EEEECCCCCEEEeecCCCcc--Cc-------------EEECCEEEEEcCCCeEEEEECCCC-------------cEEEcc
Confidence 99999999999998754321 11 123789999999999999999876 334433
Q ss_pred -ccCCcccccceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 791 -ELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 791 -~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+.+...++|++.++.||+++.+|.|+++|..+|++.+
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 33455678899999999999999999999999998754
No 102
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.96 E-value=8.3e-29 Score=281.34 Aligned_cols=235 Identities=22% Similarity=0.287 Sum_probs=191.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccccc--CCCCccccccccCCcEEEE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM--STLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i 93 (829)
++++||.+++|||++++++.++|++ + ++.+++.||+||++.+++............. ......++|+|.+++++++
T Consensus 292 ~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v 369 (542)
T PRK06018 292 KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI 369 (542)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence 5689999999999999999999998 5 8899999999999876553221110000000 0012357899999999999
Q ss_pred ecCCCCCC-----CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 94 VESDTVKP-----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 94 ~d~~~~~~-----~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+++... ..|||+++|+.++.||++.. ...+ ..++||+|||+++++++|.++++||
T Consensus 370 ~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~---------------~~~~~~~TGDl~~~~~~g~~~~~GR 431 (542)
T PRK06018 370 TDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEIL---------------DDDGFFDTGDVATIDAYGYMRITDR 431 (542)
T ss_pred ECCCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEe---------------cCCcEEEcCCEEEEcCCccEEEEec
Confidence 98776321 35999999999999999832 2211 1368999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||..+.++|.|.+|+|++.++...+..+.+++++.++... ..++++++++++++.+++|..
T Consensus 432 ~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~~ 508 (542)
T PRK06018 432 SKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETA---TREEILKYMDGKIAKWWMPDD 508 (542)
T ss_pred CCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCC---CHHHHHHHHHhhCccccCCcE
Confidence 99999999999999999999999999999999998887666778888887655432 235788899999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++++||+|++||++|++|++.+.
T Consensus 509 i~~v~~iP~t~~GKi~r~~L~~~~~ 533 (542)
T PRK06018 509 VAFVDAIPHTATGKILKTALREQFK 533 (542)
T ss_pred EEEeccCCCCCcchhhHHHHHHHHh
Confidence 9999999999999999999987654
No 103
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=6.5e-29 Score=281.39 Aligned_cols=223 Identities=20% Similarity=0.254 Sum_probs=180.6
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE-----
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV----- 92 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~----- 92 (829)
++++.+ .|+++++.....+.+.+ +.+++|.||+||++..++... .....++|+|+++++++
T Consensus 265 ~~l~~~--~G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----------~~~~~~vG~p~~g~~i~~~~~~ 330 (540)
T PRK13388 265 NPLRVA--FGNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP-----------GTPPGSIGRGAPGVAIYNPETL 330 (540)
T ss_pred cceEEE--ECCCCCHHHHHHHHHHh-CCceecccccccccceeecCC-----------CCCCCCCCCCCCCcEEEcCCCC
Confidence 456643 36667888888888887 689999999999986554211 11345789999997653
Q ss_pred ------EecCCCC----CCCCCeEEEc-cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC
Q 003331 93 ------LVESDTV----KPDEGEIYAG-GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 161 (829)
Q Consensus 93 ------i~d~~~~----~~~~Gel~i~-g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G 161 (829)
++|+++. .+..|||++. |++++.||+++|+.+.+.| .++||+|||+++++++|
T Consensus 331 ~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~----------------~~g~~~TGD~~~~~~dg 394 (540)
T PRK13388 331 TECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM----------------RHGMYWSGDLAYRDADG 394 (540)
T ss_pred ccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh----------------hcCceeccceEEEcCCC
Confidence 2233221 2357999998 9999999999999888776 24699999999999999
Q ss_pred cEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh--c
Q 003331 162 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS--K 239 (829)
Q Consensus 162 ~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~--~ 239 (829)
.++++||.||+||++|++|+|.+||++|.++|.|.+|+|++.++...+..+++++++..+.... .++++++++. .
T Consensus 395 ~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~l~~~~~ 471 (540)
T PRK13388 395 WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---PDAFAAFLAAQPD 471 (540)
T ss_pred cEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC---HHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998876667777888776543222 2467777765 4
Q ss_pred CCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.+++|..++++++||+|++||++|++|++...
T Consensus 472 l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~ 505 (540)
T PRK13388 472 LGTKAWPRYVRIAADLPSTATNKVLKRELIAQGW 505 (540)
T ss_pred CCcccCCcEEEEeccCCCCCcceeeHHhHHHhcc
Confidence 9999999999999999999999999999987654
No 104
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.96 E-value=9.2e-29 Score=281.42 Aligned_cols=234 Identities=20% Similarity=0.292 Sum_probs=189.7
Q ss_pred CCCCCCCccEEEEec-CCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcE
Q 003331 13 NMHVPSSLKLLVLSG-EVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCD 90 (829)
Q Consensus 13 ~~~~~~~lr~i~~gG-e~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~ 90 (829)
....++++|.+.++| .+.+..+.+++.+. ++++++.||+||++..++...... .......+.|.|+ +++.
T Consensus 289 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~ 360 (540)
T PRK06164 289 ERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATD------PVSVRIEGGGRPASPEAR 360 (540)
T ss_pred ccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCC------CCcceeccCccccCCCeE
Confidence 345688999887776 45556666666654 789999999999987665432211 0111334567775 7899
Q ss_pred EEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 91 IVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++++|++. +.++.|||+|+|++++.||+++|+.+...|.. ++||+|||+|+++++|.+++.
T Consensus 361 ~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---------------~~~~~TGDl~~~~~~g~l~~~ 425 (540)
T PRK06164 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTD---------------DGYFRTGDLGYTRGDGQFVYQ 425 (540)
T ss_pred EEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccC---------------CCceecCCeEEEcCCceEEEE
Confidence 99998543 45667999999999999999999998887742 579999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|++|+|.+||++|.++|.|.+++|++.+.. ....+++++++.+.... ..+++++++++.+|.+++|
T Consensus 426 GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~---~~~~l~~~~~~~l~~~~~P 501 (540)
T PRK06164 426 TRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASP---DEAGLMAACREALAGFKVP 501 (540)
T ss_pred eecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCC---CHHHHHHHHHhhcccCcCC
Confidence 9999999999999999999999999999999999987743 34578888887654322 2468889999999999999
Q ss_pred CeEEEeCcccCCCCC---Ccchhhhccccc
Q 003331 247 NRFVFMDSLPMTSSG---KVDYASLSASTS 273 (829)
Q Consensus 247 ~~~~~~~~lP~t~~G---Ki~r~~l~~~~~ 273 (829)
..+++++++|+|++| |++|++|++.+.
T Consensus 502 ~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~ 531 (540)
T PRK06164 502 ARVQVVEAFPVTESANGAKIQKHRLREMAQ 531 (540)
T ss_pred cEEEEecCCCCCCCCccccccHHHHHHHHH
Confidence 999999999999999 999999987644
No 105
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.96 E-value=5.9e-29 Score=297.21 Aligned_cols=222 Identities=16% Similarity=0.269 Sum_probs=176.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCc-EEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC-DIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i 93 (829)
.++++||.++ |+.+++++++++.+.+++++++|.||+||+++.++. .. .....++|+|++++ +++|
T Consensus 717 ~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~---------~~~~~svG~p~pg~~~v~i 783 (994)
T PRK07868 717 HGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VS---------GAKIGSKGRPLPGAGRVEL 783 (994)
T ss_pred CCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc--cC---------CCCCcccCCccCCCCceeE
Confidence 3567899776 445999999999999977899999999998754321 10 12456899999997 5655
Q ss_pred e-----------cCCC-----CCCCCCeEEEccccccccccCCCCCCcc--cccccCCcccccCcCCCCCcceEecCceE
Q 003331 94 V-----------ESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPS--EYVKLHNNSICNCSVSCGSQTYFRTGDFA 155 (829)
Q Consensus 94 ~-----------d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~TGDl~ 155 (829)
. |+++ ++++.|||+++++. |+ +|+.+.. .|. .+++||+|||+|
T Consensus 784 ~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~-~p~~t~~~~~~~--------------~~dgw~~TGDlg 844 (994)
T PRK07868 784 AAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG----PI-DPTASVKRGVFA--------------PADTWISTEYLF 844 (994)
T ss_pred EEecCcCCceeecCCceEEEcCCCCceEEEEecCC----CC-ChhhhhHhcccc--------------cCCEEEeccceE
Confidence 3 3333 35677999999875 33 3433221 121 147899999999
Q ss_pred EEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHH
Q 003331 156 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSW 235 (829)
Q Consensus 156 ~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 235 (829)
++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|++.+++. .+.++++|+++++.... .++|+++
T Consensus 845 ~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~---~~~L~~~ 920 (994)
T PRK07868 845 RRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAIT---AADLTEA 920 (994)
T ss_pred EEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCC---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999988765 46788899887653322 3578888
Q ss_pred HHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 236 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 236 l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++ +|.|++|..++++++||+|++||++|++|++...
T Consensus 921 l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 921 LAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred HHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 885 8999999999999999999999999999976543
No 106
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=1.7e-29 Score=293.35 Aligned_cols=232 Identities=18% Similarity=0.263 Sum_probs=181.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.++..+ + .++|.||+||+++.++..... .....++|+|+++++++|+|.+
T Consensus 428 ~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~~---------~~~~~svG~p~~g~evkI~d~~ 496 (700)
T PTZ00216 428 GRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRTG---------DLEPNAVGQLLKGVEMKLLDTE 496 (700)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCCC---------CCCCCCcCCcCCCeEEEEeech
Confidence 6899999999999999988777766 5 899999999998665532211 2245789999999999999865
Q ss_pred C-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 98 T-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 98 ~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+ .++..|||+|+|++++.||+++|+.|.+.|.. ++||+|||+|++++||.|+|+||+||+
T Consensus 497 ~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~---------------dGw~~TGDig~~d~dG~l~i~GR~kd~ 561 (700)
T PTZ00216 497 EYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDE---------------DGWFHTGDVGSIAANGTLRIIGRVKAL 561 (700)
T ss_pred hhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccc---------------cCCeeccceEEEcCCCcEEEEEehHhh
Confidence 3 34557999999999999999999999998853 579999999999999999999999999
Q ss_pred EE-ECCeeeChHHHHHHHhCCCCeeEE--EEEEeecCCceEEEEEEEEecCCC-----------Cc------hHHHHHHH
Q 003331 173 IK-INGQRMALEEIEHTLRGHPDVVDT--AVVSHKHQGELVILVAFIVLKEKK-----------TS------SEIFLSSI 232 (829)
Q Consensus 173 ik-~~G~~i~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~-----------~~------~~~~~~~l 232 (829)
|| .+|++|+|++||+++.+||.|.++ +|+..++. ..++|++++.... .. .+...+.+
T Consensus 562 ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 638 (700)
T PTZ00216 562 AKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKA 638 (700)
T ss_pred eecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHH
Confidence 99 699999999999999999999973 44443332 3678888875311 00 11122233
Q ss_pred HHHH-----HhcCCCCCcCCeEEEeCc------ccCCCCCCcchhhhcccccccccc
Q 003331 233 KSWV-----SSKLPLAMIPNRFVFMDS------LPMTSSGKVDYASLSASTSFTISA 278 (829)
Q Consensus 233 ~~~l-----~~~l~~~~~p~~~~~~~~------lP~t~~GKi~r~~l~~~~~~~~~~ 278 (829)
.+.+ +..+..+..++.|+++.+ =.+|+++|+.|+++.+.|+..++.
T Consensus 639 ~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 695 (700)
T PTZ00216 639 TESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKE 695 (700)
T ss_pred HHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHH
Confidence 3322 246888888999988754 247999999999998877655443
No 107
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.96 E-value=1.6e-28 Score=282.38 Aligned_cols=232 Identities=21% Similarity=0.258 Sum_probs=176.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccC----CcEE-
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS----NCDI- 91 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~----~~~~- 91 (829)
..++|. ++|+++++++++++.+.++...++|.||+||++..++.. .. ...++|.+.+ +..+
T Consensus 313 ~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~----------~~~~~g~~~~~~~~~~~~~ 378 (600)
T PRK08279 313 DHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--FN----------FDGTVGRVPLWLAHPYAIV 378 (600)
T ss_pred CcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc--CC----------CCcccccccccccccceee
Confidence 445664 458889999999999999766799999999987533211 10 1223444433 2222
Q ss_pred --------EEecCCC-----CCCCCCeEE--EccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEE
Q 003331 92 --------VLVESDT-----VKPDEGEIY--AGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156 (829)
Q Consensus 92 --------~i~d~~~-----~~~~~Gel~--i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 156 (829)
.+.+.++ ++++.|||+ +.|++++.|| ++++.+...|...... .+++||+|||+|+
T Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~---------~~~~~~~TGDlg~ 448 (600)
T PRK08279 379 KYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK---------KGDAWFNTGDLMR 448 (600)
T ss_pred eeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC---------CCCceEeecceEE
Confidence 1222221 345679998 7899999999 8888888877543221 2468999999999
Q ss_pred EccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEecCCCCchHHHHHHHHHH
Q 003331 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVLKEKKTSSEIFLSSIKSW 235 (829)
Q Consensus 157 ~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 235 (829)
++++|.++++||.||+||++|+||+|.|||++|.++|+|.+|+|++.+... .+...+++++..++.. ...++++++
T Consensus 449 ~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~---~~~~~l~~~ 525 (600)
T PRK08279 449 DDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE---FDLAALAAH 525 (600)
T ss_pred EcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc---CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999877543 2333445555543222 224689999
Q ss_pred HHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 236 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 236 l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
++++||.|++|..++++++||+|++||++|++|++.....
T Consensus 526 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 526 LYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred HHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 9999999999999999999999999999999998766543
No 108
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=8.1e-29 Score=283.92 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=182.5
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEEEecC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIVLVES 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~ 96 (829)
++||.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++..... .....++|.|+ ++++++++|.
T Consensus 461 ~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~~---------~~~~gsvG~p~~pg~e~ki~d~ 530 (746)
T PTZ00342 461 PNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHAD---------DNNTESIGGPISPNTKYKVRTW 530 (746)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccCC---------CCCcccccCcCCCcEEEEEecc
Confidence 6899999999999999999998877 78999999999998665532211 22557899998 9999999973
Q ss_pred CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 97 DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 97 ~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+. ..++.|||+++||+++.|||++|+.|++.|. .++||+|||+|++++||+|+|+||+||+
T Consensus 531 ~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~---------------~dGW~~TGDig~~d~dG~l~i~gR~kdl 595 (746)
T PTZ00342 531 ETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFT---------------EDGYFKTGDIVQINKNGSLTFLDRSKGL 595 (746)
T ss_pred cccccCCCCCceEEEEecCcccccccCChhhhhhhcC---------------cCCcccCCcEEEECCCCeEEEEccCCCe
Confidence 32 3345799999999999999999999999884 2689999999999999999999999999
Q ss_pred EEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------------------Cch-H------
Q 003331 173 IKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------------------TSS-E------ 226 (829)
Q Consensus 173 ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------~~~-~------ 226 (829)
||+ +|++|+|.+||+++.+||.|.+|+|++.... ..++|+|++.... ... +
T Consensus 596 Ikls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~ 672 (746)
T PTZ00342 596 VKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDET 672 (746)
T ss_pred EEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhh
Confidence 997 7999999999999999999999999986432 2578888765310 000 0
Q ss_pred ----HHHHHHHHHH-----HhcCCCCCcCCeEEEeCc-c----cCCCCCCcchhhhcccccc
Q 003331 227 ----IFLSSIKSWV-----SSKLPLAMIPNRFVFMDS-L----PMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 227 ----~~~~~l~~~l-----~~~l~~~~~p~~~~~~~~-l----P~t~~GKi~r~~l~~~~~~ 274 (829)
.+.+.+++.+ +..|+.+.+++.|.++.+ | -+|++.|+.|+.+.+.|+.
T Consensus 673 ~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 673 INNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred hccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 1122223222 235999999999888753 3 3899999999999887653
No 109
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.96 E-value=1.5e-28 Score=281.07 Aligned_cols=237 Identities=24% Similarity=0.333 Sum_probs=191.0
Q ss_pred CCCCCccEEEEe--cCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLS--GEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~g--Ge~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++++.+..+ |+++++++.+.+++.++...+.+.||+||++..++......... ........++|+|+++++++
T Consensus 322 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~~~vG~p~~g~~v~ 399 (567)
T PRK06178 322 YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD--FDLLSQPVFVGLPVPGTEFK 399 (567)
T ss_pred CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc--cccccCCcccccccCCcEEE
Confidence 346778876544 59999999999999885444556899999876554321111000 00012456799999999999
Q ss_pred EecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 93 LVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
++|++ + +.++.|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.++++||
T Consensus 400 v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~----------------dg~~~TGDl~~~~~~g~l~i~GR 463 (567)
T PRK06178 400 ICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR----------------DGWLHTGDIGKIDEQGFLHYLGR 463 (567)
T ss_pred EEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhccc----------------CCceeecceEEEecCCeEEEEec
Confidence 99844 3 3466799999999999999999988876662 46999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||+++.+++.|.++++++.++...+..+++++++...... ..++++++++++++.+++|.
T Consensus 464 ~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~- 539 (567)
T PRK06178 464 RKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL---TAAALQAWCRENMAVYKVPE- 539 (567)
T ss_pred ccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcC---CHHHHHHHHHhcCcccCCce-
Confidence 99999999999999999999999999999999998877666778888888654322 23578999999999999996
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++++|+|++||++|++|++.++
T Consensus 540 i~~v~~iP~t~~GKv~r~~l~~~~~ 564 (567)
T PRK06178 540 IRIVDALPMTATGKVRKQDLQALAE 564 (567)
T ss_pred EEEeccCCCCCccceeHHHHHHHHH
Confidence 8889999999999999999987654
No 110
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.96 E-value=3.5e-28 Score=277.03 Aligned_cols=233 Identities=24% Similarity=0.311 Sum_probs=192.9
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccc--cccCCcEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG--LPISNCDI 91 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~p~~~~~~ 91 (829)
...++++|.+++||+++++++.+++.+.+++..+++.||+||++..++..... ...+.| .+.++..+
T Consensus 292 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~ 360 (533)
T PRK07798 292 PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK-----------GAVHTGGPRFTIGPRT 360 (533)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC-----------CCccCCCCccCCCceE
Confidence 34678999999999999999999999998889999999999986544322110 112233 77889999
Q ss_pred EEecCCCCC---CCC--CeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 92 VLVESDTVK---PDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 92 ~i~d~~~~~---~~~--Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+++++++.+ +.. |+++ .++.+..||+++++.+...|... ++.+||+|||+++++++|.++++
T Consensus 361 ~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~------------~~~~~~~TGD~~~~~~~g~l~~~ 427 (533)
T PRK07798 361 VVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTI------------DGVRYAIPGDRARVEADGTITLL 427 (533)
T ss_pred EEECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccC------------CCCceEEcCcEEEEcCCCcEEEE
Confidence 999877743 333 5665 45678999999999998887542 14679999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.|++||++|++|+|.+||+++.++|.|.+++|++.++...+..+++++++...... ..+++++++++.|+.+++|
T Consensus 428 GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P 504 (533)
T PRK07798 428 GRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP---DLAELRAHCRSSLAGYKVP 504 (533)
T ss_pred ccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC---CHHHHHHHHhhhcccCCCC
Confidence 9999999999999999999999999999999999998877666778888887654322 2468899999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
..++.++++|+|++||++|+.|+++..
T Consensus 505 ~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 505 RAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred eEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 999999999999999999999998653
No 111
>PLN02479 acetate-CoA ligase
Probab=99.96 E-value=1.5e-28 Score=280.37 Aligned_cols=239 Identities=21% Similarity=0.313 Sum_probs=189.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc--cCCCCccccccccCCcE-EE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MSTLKSVPIGLPISNCD-IV 92 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~p~~~~~-~~ 92 (829)
.++++|.++++|+++++.+.+++.+. +.++++.||+||+++.++............ .........|.|.+++. ++
T Consensus 308 ~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 385 (567)
T PLN02479 308 PLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLD 385 (567)
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCcee
Confidence 46899999999999999999998875 679999999999865444221110000000 00011234677777775 77
Q ss_pred EecCC-CC---CC--CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 93 LVESD-TV---KP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 93 i~d~~-~~---~~--~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++|++ +. .+ ..|||+++|+.++.||+++|+.+.+.|. ++||+|||+++++++|.++|+
T Consensus 386 i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDl~~~~~~g~l~~~ 449 (567)
T PLN02479 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA----------------NGWFHSGDLGVKHPDGYIEIK 449 (567)
T ss_pred EEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc----------------CCceecceeEEEcCCccEEEe
Confidence 88743 21 22 3599999999999999999999998873 479999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhcCCCCC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~ 244 (829)
||.||+||++|+||+|.+||.+|.+||.|.+++|++.++...+..+++++++...... .+...++|+++++++||.++
T Consensus 450 GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 529 (567)
T PLN02479 450 DRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYW 529 (567)
T ss_pred ccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999998876666788888887755321 13455789999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 245 IPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+|..+++ .++|+|++||++|++|++.+.
T Consensus 530 ~P~~~~~-~~iP~t~~gKv~r~~L~~~~~ 557 (567)
T PLN02479 530 VPKSVVF-GPLPKTATGKIQKHVLRAKAK 557 (567)
T ss_pred CCceEEe-ccCCCCCccCeeHHHHHHHHH
Confidence 9998876 679999999999999986543
No 112
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.96 E-value=2e-28 Score=280.24 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=185.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCC-----ceEEeecCccccccccccccccCCCccc-----------------
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPN-----ISILNLYGSTEVSGDCTYFDCKRLPSIL----------------- 72 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~-----~~i~~~YG~TE~~~~~~~~~~~~~~~~~----------------- 72 (829)
.++++||.+++||+++++.+.+.+.+.++. ..+++.||+||++..++...........
T Consensus 296 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (579)
T PRK09192 296 LDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPG 375 (579)
T ss_pred cchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccC
Confidence 357899999999999999999999887632 3599999999998766543221100000
Q ss_pred --ccCCCCccccccccCCcEEEEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcc
Q 003331 73 --EMSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQT 147 (829)
Q Consensus 73 --~~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 147 (829)
........++|+|+++++++++|+++. .++.|||+++|+++++||+++ ..+.+.|. .++
T Consensus 376 ~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~---------------~dg 439 (579)
T PRK09192 376 AETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLA---------------ADG 439 (579)
T ss_pred CCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-cccccccc---------------CCc
Confidence 000001247899999999999987653 456799999999999999998 55555443 367
Q ss_pred eEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCee--EEEEEEeecCCceEEEEEEEEecCCCCch
Q 003331 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV--DTAVVSHKHQGELVILVAFIVLKEKKTSS 225 (829)
Q Consensus 148 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (829)
||+|||++++ ++|+++++||.||+||++|+||+|.|||++|.+||.|. ++++++.+++.. ..++++++.....
T Consensus 440 w~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~-~~~~~~v~~~~~~--- 514 (579)
T PRK09192 440 WLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG-EKIVLLVQCRISD--- 514 (579)
T ss_pred eeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC-eeEEEEEEecCCC---
Confidence 9999999998 99999999999999999999999999999999999998 888888877653 4677777765432
Q ss_pred HHHHHHHHHHHHhcCC-CCCcCCeEEEeC--cccCCCCCCcchhhhcccccc
Q 003331 226 EIFLSSIKSWVSSKLP-LAMIPNRFVFMD--SLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 226 ~~~~~~l~~~l~~~l~-~~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+...+++++++++.++ .+++|..++++. +||+|++||++|++|++.+..
T Consensus 515 ~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 515 EERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 2233567777777764 577888887775 899999999999999887654
No 113
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.96 E-value=2e-28 Score=281.74 Aligned_cols=233 Identities=25% Similarity=0.309 Sum_probs=181.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.+ +.++.+.+++.||+||+++.++..... ......++|.|+++++++++|.+
T Consensus 383 ~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~gsvG~p~~~~evki~d~~ 453 (660)
T PLN02430 383 GRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGPTTLGFPD--------EMCMLGTVGAPAVYNELRLEEVP 453 (660)
T ss_pred CeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhceEeeccc--------cCCCCCCccCCCCceEEEEEEcC
Confidence 689999999999999986555 445457899999999998765532211 11135679999999999997621
Q ss_pred --C----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 98 --T----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 98 --~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
+ ..+..|||+|+|++++.||+++|+.|.+.| .++||+|||+|++++||.|+|+||+||
T Consensus 454 ~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~----------------~dGw~~TGDig~~d~dG~l~i~gR~kd 517 (660)
T PLN02430 454 EMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM----------------KDGWFHTGDIGEILPNGVLKIIDRKKN 517 (660)
T ss_pred CcCcccCCCCCcceEEecCCCccccccCChHHhhhhh----------------hccceeccceEEECCCCcEEEEEcccc
Confidence 1 233469999999999999999999998877 257999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------------chHHHHH---
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------------SSEIFLS--- 230 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~--- 230 (829)
+||+ +|++|+|.+||.++.+||.|.+|+|++.. ....++|+|++..... ..+.+.+
T Consensus 518 ~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 594 (660)
T PLN02430 518 LIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHIL 594 (660)
T ss_pred cEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHH
Confidence 9998 79999999999999999999999999843 2347888888764210 0111222
Q ss_pred -HHHHHH-HhcCCCCCcCCeEEEeCc-c-----cCCCCCCcchhhhcccccccccc
Q 003331 231 -SIKSWV-SSKLPLAMIPNRFVFMDS-L-----PMTSSGKVDYASLSASTSFTISA 278 (829)
Q Consensus 231 -~l~~~l-~~~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~~ 278 (829)
++.+.. +..|+.+.++..++++++ | .+|+++|+.|+.+.+.|...++.
T Consensus 595 ~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 650 (660)
T PLN02430 595 SELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE 650 (660)
T ss_pred HHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence 333332 235999999999998764 3 58999999999998877655433
No 114
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.5e-27 Score=268.04 Aligned_cols=327 Identities=27% Similarity=0.340 Sum_probs=235.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCC--cEEEEe
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN--CDIVLV 94 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--~~~~i~ 94 (829)
.+.|+..+.+||+++.++...+.+.+.-.-+..-|++||....+++..+.........+....+|...-+-+ ....+.
T Consensus 326 ~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~ 405 (1032)
T KOG1178|consen 326 RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESL 405 (1032)
T ss_pred chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeee
Confidence 447999999999999999987777654444455599999998888777655444333332222222211111 111111
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCC-----CCcccccccCCcccccCc-CCCCCcceEecCceEEEccCCcEEEEee
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSEST-----FMPSEYVKLHNNSICNCS-VSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~-----~~~~~f~~~~~~~~~~~~-~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
. ..+..||.++.+.+++.++....- .+++.|. +++. .....+++|+|||+|+..++|.+.+.||
T Consensus 406 ~---~~~~~~~~~v~~~~l~~~~~~~~~~~~g~~~~~~~~-------~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR 475 (1032)
T KOG1178|consen 406 Y---RAGGEGEGGVGKGCLGAEQNLSSWVVDGYSTPENFL-------PNFLTVDGVKARIYRTGDNGRSLKNGGLEISGR 475 (1032)
T ss_pred e---ccCcccCCcccceeecccccccceeeccccchhhcC-------CcccccccchhhcccccccceeecCCCEEEEEe
Confidence 1 123345555555555554432211 2222221 1111 1234678999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.|+|||+||+|+.+.||++++..||.|.++.+....+...++.+++|++........ ....|+.++.+.|+.||+|..
T Consensus 476 ~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~--~~~~i~~~l~~~La~y~vPs~ 553 (1032)
T KOG1178|consen 476 ADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV--LIRDIRNYLKKELASYMLPSL 553 (1032)
T ss_pred ccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch--hHHHHHHhhcccccceecceE
Confidence 999999999999999999999999999999999988887788999999987664433 367899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccccccccccc----ccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHH
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDA----DETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAA 324 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~ 324 (829)
++.++++|+|++||||+++|..........+... .+...+..+..++..|-...+...++++++||++||||+.|+
T Consensus 554 ~V~l~~vPl~~~GKvDkkaL~~~~s~~~~~~~s~~~~~~~~~~~~~~~~v~d~~l~~~~~~~~s~d~~fF~lGgdSi~av 633 (1032)
T KOG1178|consen 554 VVPLAKVPLNPNGKVDKKALLEYNSKLTNVQDSSLSEAKDSILSLPLSTVFDLWLSIGSLAIVSPDSSFFQLGGDSISAV 633 (1032)
T ss_pred EEEhhhCCcCCCCCcChhhhhhhhhhhcccccceeeccccccccccccchhhhhhhhcCccccCCCcchhhhcchhHHHH
Confidence 9999999999999999999988444332222221 122333455566777766666456788999999999999999
Q ss_pred HHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 325 HVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 325 ~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
++...| +.++..+|..+|+..++..+.....
T Consensus 634 ~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~ 670 (1032)
T KOG1178|consen 634 RLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKS 670 (1032)
T ss_pred HHHHhhhhhheeccccccccchhhHHHHHHHHhhhhh
Confidence 998765 4788899999999999877665543
No 115
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.95 E-value=1.4e-28 Score=282.66 Aligned_cols=234 Identities=21% Similarity=0.335 Sum_probs=180.1
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHh----C-CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKL----F-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~----~-~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
.+++||.+++||+++++++.+.+.+. + .++++++.||+||++..++..... .....++|+|+++++
T Consensus 332 ~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~pg~~ 402 (614)
T PRK08180 332 FFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP---------LSRAGNIGLPAPGCE 402 (614)
T ss_pred hccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc---------cCCCCcccCccCCcE
Confidence 46899999999999999999998875 2 247899999999998666532211 124568999999999
Q ss_pred EEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE----ccCCcEEEE
Q 003331 91 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR----IQSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~----~~~G~l~~~ 166 (829)
++++|+ +..|||+++|+.++.||+++|+.|.+.|. .++||+|||+|++ +++|+++|+
T Consensus 403 v~i~d~----~~~GEi~vrg~~v~~GY~~~p~~t~~~~~---------------~dgw~~TGDlg~~~~~~d~~g~l~i~ 463 (614)
T PRK08180 403 VKLVPV----GGKLEVRVKGPNVTPGYWRAPELTAEAFD---------------EEGYYRSGDAVRFVDPADPERGLMFD 463 (614)
T ss_pred EEEecC----CCCcEEEEecCccchhhcCChhHhHhhcc---------------cCCceeccceEEecCCcCCCCceEEe
Confidence 999975 34699999999999999999999888773 3689999999999 468999999
Q ss_pred eecCCcEEE-CCeeeC--hHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------c-hHHHHHH
Q 003331 167 GRKDRTIKI-NGQRMA--LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------S-SEIFLSS 231 (829)
Q Consensus 167 GR~dd~ik~-~G~~i~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------~-~~~~~~~ 231 (829)
||+||+||+ +|++|+ |.|+|.++.+||.|.+|+|++.+++ .+.|+|++..+.. . .....++
T Consensus 464 GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (614)
T PRK08180 464 GRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPA 539 (614)
T ss_pred cchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHH
Confidence 999999997 799877 7788899999999999999998865 4667787764310 0 0011234
Q ss_pred HHHHHHhcCCCCC--------cCCeEEEeCcccCCCCC------Ccchhhhccccccccccccc
Q 003331 232 IKSWVSSKLPLAM--------IPNRFVFMDSLPMTSSG------KVDYASLSASTSFTISAQHD 281 (829)
Q Consensus 232 l~~~l~~~l~~~~--------~p~~~~~~~~lP~t~~G------Ki~r~~l~~~~~~~~~~~~~ 281 (829)
|++++++.|..+. .|+++++++++|++++| |+.|+++.+.|+..++..+.
T Consensus 540 l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 540 VRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYA 603 (614)
T ss_pred HHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhC
Confidence 5555555554444 89999999999987666 55677777766665555444
No 116
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.95 E-value=5.5e-28 Score=262.46 Aligned_cols=166 Identities=29% Similarity=0.467 Sum_probs=150.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
..+|++++||+++++++...++.. +++++++||+|||++.++..+..+ ....++|+|+|+++++|.|+
T Consensus 353 gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~~---------~~~gtvG~p~p~~evKI~d~- 420 (613)
T COG1022 353 GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPDR---------FVLGTVGKPLPGIEVKIADD- 420 (613)
T ss_pred CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccccC---------cccCCcCCcCCCceEEEccC-
Confidence 579999999999999999988887 799999999999998888754432 35678899999999999985
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEE-C
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-N 176 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~ 176 (829)
|||+|+||.+++|||++|+.|++.|.. +|||+|||+|.++++|+|.++||+++.||. +
T Consensus 421 ------GEilVRG~~Vm~GYyk~pe~Taeaf~~---------------DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~ 479 (613)
T COG1022 421 ------GEILVRGPNVMKGYYKNPEATAEAFTE---------------DGWFRTGDLGELDEDGYLVITGRKKELIKLSN 479 (613)
T ss_pred ------ceEEEecchhcchhcCChHHHhhhccc---------------cCCcccCceeEEcCCCcEEEeecccceEECCC
Confidence 999999999999999999999999963 899999999999999999999999999999 9
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
|++|.|+.||..+.++|.|.+++|++..+. .+.|++++..
T Consensus 480 GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----~~~AlIvp~~ 519 (613)
T COG1022 480 GKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDF 519 (613)
T ss_pred CcccChHHHHHHHhcCCCeeEEEEEecCCc----ceEEEEeCCH
Confidence 999999999999999999999999993332 6788888754
No 117
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.95 E-value=1e-27 Score=274.88 Aligned_cols=250 Identities=21% Similarity=0.269 Sum_probs=180.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCccc-------cc---------
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSIL-------EM--------- 74 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~~-------~~--------- 74 (829)
+++++|.+++||++++++++++|.+.++ +..+++.||+||++..+........+... ..
T Consensus 286 ~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (578)
T PRK05850 286 DLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETG 365 (578)
T ss_pred chhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCC
Confidence 5679999999999999999999988763 35799999999987655432211100000 00
Q ss_pred CCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEe
Q 003331 75 STLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR 150 (829)
Q Consensus 75 ~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 150 (829)
......++|.|. +.+++++|++. +.++.|||+++|+.++.||+++|+.+.+.|......+. .....++||+
T Consensus 366 ~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~----~~~~~~~w~~ 440 (578)
T PRK05850 366 GGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPS----PGTPEGPWLR 440 (578)
T ss_pred CCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhccccccc----ccCCCCCeee
Confidence 011123456664 57889988543 35677999999999999999999999998854221100 0011357999
Q ss_pred cCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHH---
Q 003331 151 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI--- 227 (829)
Q Consensus 151 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 227 (829)
|||+|+++ +|+++++||.||+||++|++|+|.|||++|.+||.+. +++++.++. .+..++++++++......+.
T Consensus 441 TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~ 517 (578)
T PRK05850 441 TGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDEEAMD 517 (578)
T ss_pred ccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcchhhhh
Confidence 99999987 9999999999999999999999999999999999854 667777765 55678888888765332211
Q ss_pred HHHHHHHHHHhcCCC--CCcCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 228 FLSSIKSWVSSKLPL--AMIPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~--~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
....+++.+...++. ...|..+++++ .||+|++|||+|++|++.+.
T Consensus 518 ~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~ 567 (578)
T PRK05850 518 RLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYR 567 (578)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHH
Confidence 234555555554432 23566666664 79999999999999988664
No 118
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.95 E-value=5.2e-27 Score=257.02 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=166.9
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+++.+++||+++++++.+++++. ..+++|.||+||+++++.... .....++|+|++++++++.++
T Consensus 212 ~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~G~p~~~~~~~~~~~- 277 (414)
T PRK08308 212 FQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD-----------MKSHLDLGNPLPHVSVSAGSD- 277 (414)
T ss_pred ccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC-----------CCCCCccCccCCCeEEEEecC-
Confidence 478999999999999999999887 468999999999986443211 113457899999999988753
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
.+..|||++.+ ..+||+|||+++++++|.++++||.||+||++|
T Consensus 278 --~~~~gel~v~~----------------------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G 321 (414)
T PRK08308 278 --ENAPEEIVVKM----------------------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSG 321 (414)
T ss_pred --CCCCceEEEEc----------------------------------CCceEECCceEEECCCccEEEecccCCeEEECC
Confidence 34569998853 146899999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003331 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
+||+|.|||++|.++|+|.+++|++.+++..++.++++++..... ..++++++++++|+.+++|..++.+++||+
T Consensus 322 ~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~ 396 (414)
T PRK08308 322 LNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI-----DPVQLREWCIQHLAPYQVPHEIESVTEIPK 396 (414)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-----CHHHHHHHHHHhCccccCCcEEEEeccCCC
Confidence 999999999999999999999999988877777788888765421 235788899999999999999999999999
Q ss_pred CCCCCcchhhhc
Q 003331 258 TSSGKVDYASLS 269 (829)
Q Consensus 258 t~~GKi~r~~l~ 269 (829)
|++||++|+.|.
T Consensus 397 t~~GKi~r~~~~ 408 (414)
T PRK08308 397 NANGKVSRKLLE 408 (414)
T ss_pred CCCcCeehhhhh
Confidence 999999999543
No 119
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.95 E-value=7.1e-25 Score=240.49 Aligned_cols=323 Identities=17% Similarity=0.284 Sum_probs=231.2
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc--eee---c----eEEe
Q 003331 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IEC---S----AAVL 525 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~~~---~----~~~~ 525 (829)
.+...+++.|+++++.. +.++|++ .+++||+++.++.|+++|+.||+++|+++.... ... + ..+.
T Consensus 42 ~nv~~L~~~W~~~~g~~~g~~stPvv----~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~a 117 (527)
T TIGR03075 42 ENVKKLQPAWTFSLGKLRGQESQPLV----VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVA 117 (527)
T ss_pred hhhccceEEEEEECCCCCCcccCCEE----ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccce
Confidence 33457889999999753 6789998 588999999999999999999999999876422 110 0 1112
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEEE
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~w 594 (829)
..++.||+++.++.|+++|++||+++|++.... .+.++|++.+ +.|++++. +|.|+++|++||+.+|
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 234689999999999999999999999987532 2456677764 67888753 5899999999999999
Q ss_pred eeccC--------------------------------CcccccceeecCCCEEEEEecC-----C-----------eEEE
Q 003331 595 KLPCG--------------------------------GSIFGSPAIDEVHDVLYVASTS-----G-----------RLTA 626 (829)
Q Consensus 595 ~~~~~--------------------------------~~~~~~~~~~~~~~~l~v~t~~-----g-----------~l~~ 626 (829)
++... +.++..+.++++.+.||+++.+ + .|++
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 86542 2345667888888999999833 2 5899
Q ss_pred EEccCCCceEEEeeccCCcce------eeeeee---ecCC---EEEEEeeCCeEEEEc-CCCCEEEEe----------ec
Q 003331 627 ISVKALPFHTLWLHELEVPAF------ASLCIT---SANR---HVICCLVDGHVVALD-SSGSIIWRC----------RT 683 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~------~s~~~~---~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~----------~~ 683 (829)
+|++| |+.+|+++...... ..+.+. .+++ .+..++.+|.+|++| .+|+++|.. ..
T Consensus 276 ld~~T--G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 276 RDPDT--GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred Ecccc--CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 99998 99999997643211 122222 2333 566888999999999 899987321 11
Q ss_pred C----Cce----------------eecCc---------cccc-CCCeEEEEee---------------------------
Q 003331 684 G----GPI----------------FAGPC---------TSFA-LPSQVLICSR--------------------------- 706 (829)
Q Consensus 684 ~----~~~----------------~~~~~---------~~~~-~~~~i~~~t~--------------------------- 706 (829)
. .++ ...|. ...+ ..+.+|+.+.
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 1 000 00000 0001 1233444322
Q ss_pred ------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccc
Q 003331 707 ------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSK 780 (829)
Q Consensus 707 ------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~ 780 (829)
.|.|.++|+.||+++|+++...+....+... .++.+++++.+|.++++|.++|
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t------------~g~lvf~g~~~G~l~a~D~~TG--------- 492 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT------------AGDLVFYGTLEGYFKAFDAKTG--------- 492 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEE------------CCcEEEEECCCCeEEEEECCCC---------
Confidence 2579999999999999988765543333222 2778899999999999999988
Q ss_pred cccceeeeeeccCCcccccceE--ECCEEEEeee
Q 003331 781 DHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR 812 (829)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~ 812 (829)
+.+|++++.+.+..+|+. .++++|+...
T Consensus 493 ----e~lw~~~~g~~~~a~P~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 493 ----EELWKFKTGSGIVGPPVTYEQDGKQYVAVL 522 (527)
T ss_pred ----CEeEEEeCCCCceecCEEEEeCCEEEEEEE
Confidence 778888999888899987 6788887643
No 120
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.95 E-value=3.9e-27 Score=271.37 Aligned_cols=235 Identities=18% Similarity=0.262 Sum_probs=177.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhC----C-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLF----P-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~----~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
.+++||.+++||+++++++.+.+.+.+ + ++.+++.||+||++..++..... .....++|+|+++++
T Consensus 344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~pg~~ 414 (624)
T PRK12582 344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD---------TERVGLIGLPLPGVE 414 (624)
T ss_pred HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC---------CCCCCCCCcCCCCcE
Confidence 367999999999999999999998863 2 36899999999998655421110 123557899999999
Q ss_pred EEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE-c---cCCcEEEE
Q 003331 91 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR-I---QSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~-~---~~G~l~~~ 166 (829)
+++++ .++.|||+|+|++++.||+++|+.+.+.|. .++||+|||+|++ + ++|.|+|+
T Consensus 415 v~i~~----~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~---------------~dgw~~TGDlg~~~d~~~~~g~l~i~ 475 (624)
T PRK12582 415 LKLAP----VGDKYEVRVKGPNVTPGYHKDPELTAAAFD---------------EEGFYRLGDAARFVDPDDPEKGLIFD 475 (624)
T ss_pred EEEcc----CCCceEEEEECCcccccccCCccchhhhcC---------------ccCCccccceEEecCCcCCCCceEEe
Confidence 99973 356799999999999999999999988873 3689999999998 4 46999999
Q ss_pred eecCCcEEE-CCeeeChHHHH--HHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC---------C------chHHH
Q 003331 167 GRKDRTIKI-NGQRMALEEIE--HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK---------T------SSEIF 228 (829)
Q Consensus 167 GR~dd~ik~-~G~~i~~~~iE--~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------~------~~~~~ 228 (829)
||+||+||+ +|++|+|.+|| .++.+||.|.+|+|++.+++. +.++|++.... . ..+.+
T Consensus 476 GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l 551 (624)
T PRK12582 476 GRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAV 551 (624)
T ss_pred ccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHH
Confidence 999999997 79999999885 688899999999999987664 33343332110 0 11222
Q ss_pred HHHHHH---HHHhcCCCCC-cCCeEEEeCcccC------CCCCCcchhhhcccccccccccccc
Q 003331 229 LSSIKS---WVSSKLPLAM-IPNRFVFMDSLPM------TSSGKVDYASLSASTSFTISAQHDA 282 (829)
Q Consensus 229 ~~~l~~---~l~~~l~~~~-~p~~~~~~~~lP~------t~~GKi~r~~l~~~~~~~~~~~~~~ 282 (829)
.+.++. ..++.+|.+. .|.++++++++|+ |++||+.|+++.+.|..+++..+..
T Consensus 552 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~ 615 (624)
T PRK12582 552 LAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE 615 (624)
T ss_pred HHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC
Confidence 233332 2334467776 9999999998875 5566677888877777666665543
No 121
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.95 E-value=1.6e-26 Score=263.25 Aligned_cols=234 Identities=22% Similarity=0.299 Sum_probs=182.5
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccccc--CCCCccccccccCC-cEEEE
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM--STLKSVPIGLPISN-CDIVL 93 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~p~~~-~~~~i 93 (829)
+.+++.++++|+++++.+.+.+.+. ++++++.||+||++..++............. ......+.|.+++. ..+++
T Consensus 295 ~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 372 (545)
T PRK08162 295 IDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTV 372 (545)
T ss_pred CccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEE
Confidence 4456778899999999999988775 7899999999998644432211100000000 01112345665543 35677
Q ss_pred ecCC-CC---C-C-CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 94 VESD-TV---K-P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 94 ~d~~-~~---~-~-~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
+|++ +. . + ..|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.++++|
T Consensus 373 ~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~----------------~g~~~TGDl~~~d~dg~l~~~G 436 (545)
T PRK08162 373 LDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA----------------GGWFHTGDLAVLHPDGYIKIKD 436 (545)
T ss_pred EcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh----------------CCCcccCceEEEcCCccEEEEe
Confidence 7753 22 1 2 2499999999999999999999888772 4699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.+||+.|.++|.|.+++|++.++...++.+++++++...... ..+++++++++.||.+++|.
T Consensus 437 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~ 513 (545)
T PRK08162 437 RSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASA---TEEEIIAHCREHLAGFKVPK 513 (545)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCC---CHHHHHHHHHHhcccccCCc
Confidence 999999999999999999999999999999999998877666788888887765332 23689999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
.+++ .++|+|++||++|+.|++.+
T Consensus 514 ~~~~-~~iP~t~~gK~~r~~l~~~~ 537 (545)
T PRK08162 514 AVVF-GELPKTSTGKIQKFVLREQA 537 (545)
T ss_pred EEEe-cccCCCCCcCCcHHHHHHHH
Confidence 9875 68999999999999998754
No 122
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=240.87 Aligned_cols=234 Identities=26% Similarity=0.419 Sum_probs=186.7
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
-.||++++||+||+++.-+.+.-.+ .+++...||.||+++.++..+.. +.....+|.|++-+++.++|-+
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~---------d~~~g~vG~pl~c~eiKLvdw~ 471 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPE---------DFSTGRVGAPLPCCEIKLVDWE 471 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChh---------hcccccccCCccceEEEEEEhh
Confidence 4799999999999999877776666 67999999999999877765433 3355678999999999999743
Q ss_pred C------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 98 T------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 98 ~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
. ..++.|||+|+|+.+..||+++|+.|.+.|... ++.+||+|||+|++++||.|.++.|++|
T Consensus 472 EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~------------~G~~WF~TGDIGe~~pdG~LkIIDRKKd 539 (678)
T KOG1180|consen 472 EGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVE------------DGQRWFRTGDIGEFHPDGCLKIIDRKKD 539 (678)
T ss_pred hcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceec------------CCcEEEeccccceecCCCcEEEeechhh
Confidence 2 223689999999999999999999999999761 2567999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC------------c----------hHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT------------S----------SEIF 228 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------------~----------~~~~ 228 (829)
.||+ +|+-|+++-+|+++...|.|...+|.+.... ..++++|++..... . ..+.
T Consensus 540 LVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v 616 (678)
T KOG1180|consen 540 LVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAV 616 (678)
T ss_pred hhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHH
Confidence 9999 9999999999999999999999999887654 37899999874320 0 0112
Q ss_pred HHHHHHHH-HhcCCCCCcCCeEEEeCcc--c----CCCCCCcchhhhcccccccc
Q 003331 229 LSSIKSWV-SSKLPLAMIPNRFVFMDSL--P----MTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 229 ~~~l~~~l-~~~l~~~~~p~~~~~~~~l--P----~t~~GKi~r~~l~~~~~~~~ 276 (829)
.++|.+.- +++|..+.+|..+++.++- | .|+.-|+.|+.++..+..++
T Consensus 617 ~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei 671 (678)
T KOG1180|consen 617 LKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEI 671 (678)
T ss_pred HHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHH
Confidence 23333333 5678899999999887752 2 34556888888877665443
No 123
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.94 E-value=6.6e-25 Score=241.32 Aligned_cols=292 Identities=21% Similarity=0.287 Sum_probs=212.4
Q ss_pred EECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-e------eeeeeeecCCC
Q 003331 501 ADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-V------KCQPVVDAPRQ 571 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~------~~~~~~~~~~~ 571 (829)
-+..++++.|+++.+ ..+..++++. ++.+|+++.++.|+++|++||+++|+++.... . ...++...+++
T Consensus 34 ~n~~~~~~~W~~~~~~~~~~~~sPvv~--~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 34 ANVKKLKVAWTFSTGDERGQEGTPLVV--DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred hhhhcceeeEEEECCCCCCcccCCEEE--CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 344568889999886 4555566665 45899999999999999999999999876543 1 11111121237
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccCCc------ccccceeecCCCEEEEEec---------CCeEEEEEccCCCceE
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGSPAIDEVHDVLYVAST---------SGRLTAISVKALPFHT 636 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~~~~~~l~v~t~---------~g~l~~~~~~~~~g~~ 636 (829)
.||+++.++.|+++|.+||+.+|++..... +.++|.+.+ +.+|+++. +|.++++|.++ |+.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~T--G~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVET--GKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCC--Cce
Confidence 899999999999999999999999988665 567888876 88998863 57899999998 999
Q ss_pred EEeeccCCc---------------------ceeeeeeeecCCEEEEEeeCC------------------eEEEEc-CCCC
Q 003331 637 LWLHELEVP---------------------AFASLCITSANRHVICCLVDG------------------HVVALD-SSGS 676 (829)
Q Consensus 637 ~w~~~~~~~---------------------~~~s~~~~~~~~~l~~~~~~g------------------~i~~~d-~~g~ 676 (829)
+|+++...+ ...++.+...++.+|+++.++ .++++| .+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 999876421 112334444578999998665 799999 9999
Q ss_pred EEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecC-Cccccccccccccccc
Q 003331 677 IIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLK 743 (829)
Q Consensus 677 ~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~ 743 (829)
++|+++...+ ..+.+.+... .++ .+++++.+|.++++|.+||+++|++... ......
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~---------- 337 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYD---------- 337 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccC----------
Confidence 9999875432 1122222111 122 5899999999999999999999998754 111111
Q ss_pred cccccCCCcEEEEE------------------ccCCcEEEEEeecCccccccccccccceeeeeeccC---------Ccc
Q 003331 744 LESCLSIDRLVCIC------------------TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ---------GDI 796 (829)
Q Consensus 744 ~~~~~~~~~~l~~~------------------~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 796 (829)
.+.+|++ ..+|.|+++|..+| +.+|+.... +..
T Consensus 338 -------~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-------------~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 338 -------PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-------------KVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred -------CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-------------cEeeEeeCCccccccccCCcc
Confidence 2344443 35688999999877 444554443 233
Q ss_pred cc-cceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 797 FS-SPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 797 ~~-s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.. ++++.++.||+++.+|.||++|.+||++.+
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 33 456788999999999999999999999764
No 124
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=247.79 Aligned_cols=234 Identities=20% Similarity=0.241 Sum_probs=182.1
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
..+|.+++|++|+++++...++..+ +++|+++||+|||++.++..... +....++|.|+|+++++++|..
T Consensus 419 g~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~---------d~~lgsvG~p~p~~~vKL~dvp 488 (691)
T KOG1256|consen 419 GNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPG---------DNVLGSVGPPVPGNEVKLVDVP 488 (691)
T ss_pred CceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCC---------CCCCCCcCCcccCceEEEechH
Confidence 6799999999999999999999887 89999999999999666543221 2256789999999999998754
Q ss_pred C----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 98 T----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 98 ~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
. ..+..|||||+|++++.||+++|+.|.+.|. .+||++|||+|+++++|.|.++||+++++
T Consensus 489 e~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~id---------------eDGWLhTGDiG~~~p~G~l~IidRkK~if 553 (691)
T KOG1256|consen 489 EMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAID---------------EDGWLHTGDIGEWDPNGTLKIIDRKKNIF 553 (691)
T ss_pred HhCcCcCCCcceEEEecchhceeccCChHHHhhhhc---------------cccccccccceeECCCccEEEEecccceE
Confidence 3 3445799999999999999999999999985 48999999999999999999999999999
Q ss_pred EE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc---------------------hHHHHHH
Q 003331 174 KI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS---------------------SEIFLSS 231 (829)
Q Consensus 174 k~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~ 231 (829)
|+ .|+.|.|+.||++..+.+.|.+.+|.+.... ..|+|+|++...... .+...++
T Consensus 554 klaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~e 630 (691)
T KOG1256|consen 554 KLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSE 630 (691)
T ss_pred EcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHH
Confidence 99 9999999999999999999999999876644 378888888543211 0111222
Q ss_pred HHHHHH-hcCCCCCcCCeEEEeC------cccCCCCCCcchhhhccccccccccc
Q 003331 232 IKSWVS-SKLPLAMIPNRFVFMD------SLPMTSSGKVDYASLSASTSFTISAQ 279 (829)
Q Consensus 232 l~~~l~-~~l~~~~~p~~~~~~~------~lP~t~~GKi~r~~l~~~~~~~~~~~ 279 (829)
+.+..+ ..+..+..-..+.+.+ .=-+||+-|+.|..+.+.|..++...
T Consensus 631 l~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~m 685 (691)
T KOG1256|consen 631 LVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDEL 685 (691)
T ss_pred HHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 222221 2244444434444422 22468899999999998887665443
No 125
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.94 E-value=3.1e-26 Score=260.86 Aligned_cols=241 Identities=20% Similarity=0.282 Sum_probs=177.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHh---C--CCceEEeecCccccccccccccccCCC-------cc-------cc--
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKL---F--PNISILNLYGSTEVSGDCTYFDCKRLP-------SI-------LE-- 73 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~---~--~~~~i~~~YG~TE~~~~~~~~~~~~~~-------~~-------~~-- 73 (829)
.++++||.+++|||++++.+.+.+.+. + +...+++.||+||++..++...+.... .. ..
T Consensus 273 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK07768 273 FDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPAT 352 (545)
T ss_pred CCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccC
Confidence 567899999999999999999988774 3 234699999999998765543321100 00 00
Q ss_pred -cCCCCccccccccCCcEEEEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceE
Q 003331 74 -MSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYF 149 (829)
Q Consensus 74 -~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 149 (829)
.......++|+|+++++++++|+++. .++.|||+++|+.+++||++.+...+..+ .++||
T Consensus 353 ~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~ 416 (545)
T PRK07768 353 KGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQD----------------ADGWL 416 (545)
T ss_pred CCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCccccc----------------CCCee
Confidence 00123457999999999999987663 45679999999999999998554332211 35799
Q ss_pred ecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEee--cCCceEEEEEEEEecCCCCchHH
Q 003331 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK--HQGELVILVAFIVLKEKKTSSEI 227 (829)
Q Consensus 150 ~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 227 (829)
+|||+++++++|.++++||.||+||++|++|+|.+||+.|.++|.|.+++|++.. +...+..+++++...... .+.
T Consensus 417 ~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--~~~ 494 (545)
T PRK07768 417 DTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--DPA 494 (545)
T ss_pred eccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--cHH
Confidence 9999999999999999999999999999999999999999999999997766543 333344455555443321 222
Q ss_pred HHHHHHHHHHhcCCCC--CcCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 228 FLSSIKSWVSSKLPLA--MIPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~~--~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
...++.+++++.++.. ..|..+.+++ .||+|++||++|+.|++.+.
T Consensus 495 ~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 495 EVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 3345666666655433 5788888886 89999999999999987653
No 126
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.91 E-value=1.5e-21 Score=219.27 Aligned_cols=218 Identities=19% Similarity=0.295 Sum_probs=162.9
Q ss_pred cCccccccccccccccc----------cccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeec----
Q 003331 456 RNKRGFIQELWKVHMES----------CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS---- 521 (829)
Q Consensus 456 ~~~~~~~~~~W~~~~~~----------~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~---- 521 (829)
..+...+++.|+++++. ...++|++ .+++||+++.++.|+++|+.||+++|+++........
T Consensus 158 ~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlv----vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 158 PDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLK----VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cccccCceEEEEEECCCccccccccccccccCCEE----ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 34455799999998873 35688999 4889999999999999999999999998765432110
Q ss_pred ----eE----------------EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee----------------eeeee
Q 003331 522 ----AA----------------VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV----------------KCQPV 565 (829)
Q Consensus 522 ----~~----------------~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~----------------~~~~~ 565 (829)
.. ...+++.||+++.|+.|+++|++||+++|.|..++.+ .+.|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~ 313 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPL 313 (764)
T ss_pred cccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCE
Confidence 00 1124468999999999999999999999998654432 35566
Q ss_pred eecCCCEEEEecc----------CCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCEEEE
Q 003331 566 VDAPRQLIWCGSH----------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 566 ~~~~~~~i~~gs~----------~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v 617 (829)
+.+ +.|++|+. +|.|++||.+||+++|+++.. .+.+....++.+.+.+|+
T Consensus 314 V~~--g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ 391 (764)
T TIGR03074 314 VAG--TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL 391 (764)
T ss_pred EEC--CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE
Confidence 664 78888853 588999999999999998642 123456677777788888
Q ss_pred Eec------------------CCeEEEEEccCCCceEEEeeccCCcce------eeeeee---ecCC----EEEEEeeCC
Q 003331 618 AST------------------SGRLTAISVKALPFHTLWLHELEVPAF------ASLCIT---SANR----HVICCLVDG 666 (829)
Q Consensus 618 ~t~------------------~g~l~~~~~~~~~g~~~w~~~~~~~~~------~s~~~~---~~~~----~l~~~~~~g 666 (829)
++. .+.|+++|++| |+.+|+++...... ..+.+. ..++ .++.++.+|
T Consensus 392 ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T--Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 392 PMGNQTPDQWGGDRTPADEKYSSSLVALDATT--GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred eCCCccccccCCccccCcccccceEEEEeCCC--CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 652 25689999998 99999997632111 112221 1134 789999999
Q ss_pred eEEEEc-CCCCEEEEe
Q 003331 667 HVVALD-SSGSIIWRC 681 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~ 681 (829)
.++++| .+|+.+|..
T Consensus 470 ~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEEEECCCCCEEeec
Confidence 999999 999999964
No 127
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=5.2e-22 Score=181.68 Aligned_cols=288 Identities=18% Similarity=0.285 Sum_probs=233.9
Q ss_pred cccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEE
Q 003331 461 FIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKI 540 (829)
Q Consensus 461 ~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l 540 (829)
+....|+.-++..+.++|.|+ ++.|.+|..+|.+|.++.+||...|.+..-+.+.+.+.+..+++.+|.|+.|+++
T Consensus 42 sG~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~ 117 (354)
T KOG4649|consen 42 SGNLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNF 117 (354)
T ss_pred CCcEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcE
Confidence 456779999999999999994 7789999999999999999999999999888888899999999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC--eEEEeeccCCcccccceeecCCCEEEEE
Q 003331 541 YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY--RCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 541 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
|++|.++-..+|+.+.++.+..+|++.+.++.+|+++..|.+.+.+++++ ..+|.....++++++|..-. ..+.++
T Consensus 118 yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~--~sv~i~ 195 (354)
T KOG4649|consen 118 YALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG--SSVIIT 195 (354)
T ss_pred EEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceecc--ceEEEE
Confidence 99999999999999999999999999988899999999999999999998 89999999999999987765 788899
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeee-ecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCIT-SANRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSF 695 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~-~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~ 695 (829)
+-+|.+.+++.. |+.+|++....+++..++.+ +....+.++..+--.+.....|.++|..+.+. .++..|...+
T Consensus 196 ~VdG~l~~f~~s---G~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F 272 (354)
T KOG4649|consen 196 TVDGVLTSFDES---GRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRF 272 (354)
T ss_pred EeccEEEEEcCC---CcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccce
Confidence 999999999943 89999999999999888876 44567777765443444446699999987642 2233331111
Q ss_pred -------cCCCeEEEEeeCCeEEEE---------eCCCCcEEE--EEecCCccccccccccccccccccccCCCcEEEEE
Q 003331 696 -------ALPSQVLICSRNGSIYSF---------EQESGNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 696 -------~~~~~i~~~t~~g~l~~~---------d~~tG~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
..+..+-..+.||.+..+ +...|++.. ..++.+.++++|.+- ++.+++|
T Consensus 273 ~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-------------~grl~ig 339 (354)
T KOG4649|consen 273 DLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVII-------------DGRLLIG 339 (354)
T ss_pred eccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEE-------------ccEEEEE
Confidence 112234445566666666 777777754 346667777766543 6789999
Q ss_pred ccCCcEEEEEeec
Q 003331 758 TSSGSIHILRVNL 770 (829)
Q Consensus 758 ~~~G~l~~~d~~~ 770 (829)
..|.-+++||..+
T Consensus 340 cRDdYv~cldl~~ 352 (354)
T KOG4649|consen 340 CRDDYVRCLDLDT 352 (354)
T ss_pred EccCeEEEEeccc
Confidence 9999999999874
No 128
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.90 E-value=1.1e-22 Score=216.16 Aligned_cols=195 Identities=22% Similarity=0.241 Sum_probs=146.6
Q ss_pred cchhhhhcc--CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccc
Q 003331 4 VLPALQSQH--NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP 81 (829)
Q Consensus 4 l~~~l~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (829)
++|++.+.. ....++++|. ++||+++++++++.+.+. +...+++.||+||+++++.... +..
T Consensus 190 ~~P~~l~~l~~~~~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~--------------~~~ 253 (386)
T TIGR02372 190 GTPFIWEQLADLDYRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA--------------PDD 253 (386)
T ss_pred ECcHHHHHHHhhCcCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC--------------CCC
Confidence 345544332 1245678886 688999999999999886 2347999999999986543210 012
Q ss_pred cccccCCcEEEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC
Q 003331 82 IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 161 (829)
Q Consensus 82 ~G~p~~~~~~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G 161 (829)
.|.|+++.++.+ + + |.- .| ...|++|||+++++++|
T Consensus 254 ~~~~~p~~~~~~-~-~------~~~--~g----------------------------------~~~~~~tgD~g~~d~~G 289 (386)
T TIGR02372 254 PFRLLPDLACFA-D-T------LSS--AG----------------------------------LARRLDLQDRLAWDKDG 289 (386)
T ss_pred CcccCCCccccC-C-C------ccC--CC----------------------------------ccceeecCceEEEcCCC
Confidence 356666655432 1 0 100 00 12368999999999999
Q ss_pred cEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCC
Q 003331 162 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241 (829)
Q Consensus 162 ~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~ 241 (829)
.++|+||+||+||+.|++|+|.+||++|.+||.|.+++|... +..+.+++++.+... .+...+++++++++++|
T Consensus 290 ~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~-----g~~~~a~vv~~~~~~-~~~~~~~l~~~~~~~L~ 363 (386)
T TIGR02372 290 GFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLD-----GRRLKAFIVVAEDAD-EAELEIELRATAARHLP 363 (386)
T ss_pred cEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcC-----CceEEEEEEECCCCC-hHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999988632 246788888875432 23345689999999999
Q ss_pred CCCcCCeEEEeCcccCCCCCCcc
Q 003331 242 LAMIPNRFVFMDSLPMTSSGKVD 264 (829)
Q Consensus 242 ~~~~p~~~~~~~~lP~t~~GKi~ 264 (829)
.|++|..+.++++||+|++||++
T Consensus 364 ~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 364 APARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred CCCCCcEEEEcccCCCCCCCCcC
Confidence 99999999999999999999985
No 129
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.88 E-value=2.8e-20 Score=204.36 Aligned_cols=307 Identities=17% Similarity=0.182 Sum_probs=205.0
Q ss_pred EECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--ee---------eeeeee
Q 003331 501 ADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VK---------CQPVVD 567 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~---------~~~~~~ 567 (829)
-|..+.++.|+++.+. .+.+++++. ++.||+++.++.|+++|++||+++|+++.... .. ..+.+.
T Consensus 42 ~nv~~L~~~W~~~~g~~~g~~stPvv~--~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~ 119 (527)
T TIGR03075 42 ENVKKLQPAWTFSLGKLRGQESQPLVV--DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY 119 (527)
T ss_pred hhhccceEEEEEECCCCCCcccCCEEE--CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE
Confidence 3455678889988764 245566665 45899999899999999999999999876432 11 112232
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCCCceE
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHT 636 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~ 636 (829)
++.||+++.++.|+++|.+||+++|++.... .+.++|++.+ +.|++++. +|.|+++|+++ |+.
T Consensus 120 --~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~T--G~~ 193 (527)
T TIGR03075 120 --DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKT--GKL 193 (527)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCC--Cce
Confidence 4789999999999999999999999987532 3567788876 78999864 58899999998 999
Q ss_pred EEeeccCCcc--------------------------------eeeeeeeecCCEEEEEeeC-----C-----------eE
Q 003331 637 LWLHELEVPA--------------------------------FASLCITSANRHVICCLVD-----G-----------HV 668 (829)
Q Consensus 637 ~w~~~~~~~~--------------------------------~~s~~~~~~~~~l~~~~~~-----g-----------~i 668 (829)
+|++....+. -..+.+....+.+|+++.+ + .|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 9997643211 1233555567899998732 2 68
Q ss_pred EEEc-CCCCEEEEeecCCc------eeecCccccc-CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCC------cc
Q 003331 669 VALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGD------PI 730 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~------~~ 730 (829)
+++| .||++.|+++.-.. ....+.+... .++ .|..++.+|.+|++|..||+++|..+... .+
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 9999 99999999985321 1122222211 233 46688999999999999999974321110 00
Q ss_pred c---cc---------------------cccccccccccccccCCCcEEEEEccC--------------------------
Q 003331 731 T---AS---------------------AYIDEHLQLKLESCLSIDRLVCICTSS-------------------------- 760 (829)
Q Consensus 731 ~---~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------- 760 (829)
. .. |...........+..+..+++|+.+.+
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0 00 000000011111112234445444433
Q ss_pred -------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccccc
Q 003331 761 -------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 761 -------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
|.|.++|+.+| ++.|+.........+++. .++.+|+++.+|.|+|||.+||+..+
T Consensus 434 p~~~~~~g~l~AiD~~tG-------------k~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITG-------------KIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCCCCCceeEEEEeCCCC-------------ceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 45677777665 566666666555666655 56788888889999999999999765
No 130
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.88 E-value=3.1e-22 Score=219.73 Aligned_cols=175 Identities=32% Similarity=0.496 Sum_probs=146.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++++.+.+.++++.+++.||+||++.+++........ .... ...++|.|+++++++|+
T Consensus 231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~---~~~~-~~~~~G~~~~~~~~~i~ 306 (408)
T TIGR01733 231 PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADD---APRE-SPVPIGRPLANTRLYVL 306 (408)
T ss_pred hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccc---cCCc-cccccCcccCCceEEEE
Confidence 4578999999999999999999999999768999999999999877643322110 0001 26789999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||+++++.+.+.|...+... .++..||+|||+++++++|.+++.||.||
T Consensus 307 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~-------~~~~~~~~TGDl~~~d~~g~~~~~gR~~~ 379 (408)
T TIGR01733 307 DDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAG-------GDGARLYRTGDLVRYLPDGNLEFLGRIDD 379 (408)
T ss_pred CCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCC-------CCCceEEECCceEEEcCCCCEEEeeccCC
Confidence 87753 456799999999999999999999998886644321 01234999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAV 200 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v 200 (829)
+|+++|++|+|.+||+.|..++.|.+|+|
T Consensus 380 ~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 380 QVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999998764
No 131
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.87 E-value=5.5e-20 Score=185.18 Aligned_cols=220 Identities=28% Similarity=0.495 Sum_probs=167.0
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceE-EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAA-VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~-~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
+|.|.++|+.+|+.+|+..+......... ...+++.+|+++.++.|++||+.||+++|++...+.+...+...+ +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 57899999999999999987432211121 333567999999999999999999999999998777666665554 788
Q ss_pred EEeccCCeEEEEEcCCCeEEEee-ccCC---cc--cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKL-PCGG---SI--FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~-~~~~---~~--~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
|+++.++.++++|.++|+.+|+. .... .. ...+.+. ++.+++++.++.|+++|+++ |+.+|++....+..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCC
Confidence 99988889999999999999995 3321 11 1223333 58999999899999999998 99999998754331
Q ss_pred ---------eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 648 ---------ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 648 ---------~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
....+...++.+++++.++.++++| .+|+.+|+.. .......+ ...++.+|+++.++.|+++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~---~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP---SVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE---ECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc---eeeCCEEEEEeCCCEEEEEECCC
Confidence 1122333456999999888888889 9999889766 33333322 34578999999999999999999
Q ss_pred CcEEEEE
Q 003331 718 GNLLWEY 724 (829)
Q Consensus 718 G~~~w~~ 724 (829)
|+.+|++
T Consensus 232 G~~~W~~ 238 (238)
T PF13360_consen 232 GKVVWQQ 238 (238)
T ss_dssp TEEEEEE
T ss_pred CCEEeEC
Confidence 9999974
No 132
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.86 E-value=8.4e-21 Score=207.76 Aligned_cols=207 Identities=19% Similarity=0.273 Sum_probs=145.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc--CCcEEEEe
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI--SNCDIVLV 94 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~ 94 (829)
..+||.+++|||++++++.+.+.+.| ++++++.||+||+++......|... ..|.++ +...++|+
T Consensus 194 ~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~------------~~g~~~~~~~~~~eiv 260 (422)
T TIGR02155 194 QTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVET------------QDGLHIWEDHFYPEII 260 (422)
T ss_pred cCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeeccccc------------CCCceEecCeeEEEEE
Confidence 36899999999999999999999988 6899999999998532222222110 112233 34667788
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC-C-----cEE
Q 003331 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS-G-----DLV 164 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G-----~l~ 164 (829)
|+ ++ ++++.|||++.+. +...| ...||+|||+++++++ | .++
T Consensus 261 d~~~g~~v~~Ge~Gelvvt~~------------~~~~~----------------p~~ry~TGDl~~~~~~~Gr~~~~~~~ 312 (422)
T TIGR02155 261 DPHTGEVLPDGEEGELVFTTL------------TKEAL----------------PVIRYRTRDLTRLLPGTARTMRRMDR 312 (422)
T ss_pred CCCCCCCCCCCCeeEEEEecC------------Ccccc----------------ceeeEEcCcEEEEECCCCCccccccc
Confidence 85 33 3566799999863 12222 2458999999999876 4 468
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------CchHHHHHHHHHHHHh
Q 003331 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------TSSEIFLSSIKSWVSS 238 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~l~~ 238 (829)
+.||.||+||++|.+|+|.+||.+|.++|.|.....+..........+.+.++..... ...+.+.++|++.+++
T Consensus 313 i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 392 (422)
T TIGR02155 313 ITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQ 392 (422)
T ss_pred ccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999844444444433333566666655322 1122345778888888
Q ss_pred cCCCCCcCCeEEEeCcccCCCCCCcchh
Q 003331 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYA 266 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~ 266 (829)
.+..+.. ..++.+++||+|+ ||+.|.
T Consensus 393 ~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 393 EVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred ccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 8876642 3344457999988 999864
No 133
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.84 E-value=2.9e-18 Score=192.94 Aligned_cols=222 Identities=17% Similarity=0.214 Sum_probs=157.4
Q ss_pred EEEEECCCCcEEEEEEcCC----------ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee-----
Q 003331 498 FICADAKRSSVLWEIKLEG----------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC----- 562 (829)
Q Consensus 498 l~~~d~~tg~~~w~~~~~~----------~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~----- 562 (829)
|..-|..+-++.|+++.++ ..+.++++. ++.+|+++.++.|+++|++||+++|+++.......
T Consensus 156 In~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvv--gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 156 INPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKV--GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cCcccccCceEEEEEECCCccccccccccccccCCEEE--CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 4444556677888887653 234566665 45899999999999999999999999876543211
Q ss_pred ----eeeee---------------cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC----------------cccccce
Q 003331 563 ----QPVVD---------------APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG----------------SIFGSPA 607 (829)
Q Consensus 563 ----~~~~~---------------~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~----------------~~~~~~~ 607 (829)
...+. ..++.||+++.|+.|+++|.+||+.+|.+..++ ...++|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~ 313 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPL 313 (764)
T ss_pred cccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCE
Confidence 00011 134689999999999999999999999875432 1356788
Q ss_pred eecCCCEEEEEec----------CCeEEEEEccCCCceEEEeeccCCcce------------------eeeeeeecCCEE
Q 003331 608 IDEVHDVLYVAST----------SGRLTAISVKALPFHTLWLHELEVPAF------------------ASLCITSANRHV 659 (829)
Q Consensus 608 ~~~~~~~l~v~t~----------~g~l~~~~~~~~~g~~~w~~~~~~~~~------------------~s~~~~~~~~~l 659 (829)
+.+ +.|++++. +|.|++||.+| |+.+|+.....+.. ....+....+.+
T Consensus 314 V~~--g~VIvG~~v~d~~~~~~~~G~I~A~Da~T--Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glv 389 (764)
T TIGR03074 314 VAG--TTVVIGGRVADNYSTDEPSGVIRAFDVNT--GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLV 389 (764)
T ss_pred EEC--CEEEEEecccccccccCCCcEEEEEECCC--CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeE
Confidence 876 89999853 68899999998 99999986532110 122344455677
Q ss_pred EEEe------------------eCCeEEEEc-CCCCEEEEeecCC-c-----eeecCcccc--cCCC----eEEEEeeCC
Q 003331 660 ICCL------------------VDGHVVALD-SSGSIIWRCRTGG-P-----IFAGPCTSF--ALPS----QVLICSRNG 708 (829)
Q Consensus 660 ~~~~------------------~~g~i~~~d-~~g~~~w~~~~~~-~-----~~~~~~~~~--~~~~----~i~~~t~~g 708 (829)
|+++ +.+.|+++| .||+++|+++.-. . .-+.+.+.. ..++ .|+.++.+|
T Consensus 390 y~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 390 YLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred EEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 7653 236789999 9999999998622 1 112222211 1144 699999999
Q ss_pred eEEEEeCCCCcEEEEEe
Q 003331 709 SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~ 725 (829)
.++++|.+||+++|..+
T Consensus 470 ~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEEECCCCCEEeece
Confidence 99999999999999743
No 134
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.83 E-value=7.5e-18 Score=180.20 Aligned_cols=286 Identities=25% Similarity=0.422 Sum_probs=207.5
Q ss_pred cccccccccccccc---cccccce-EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEE
Q 003331 459 RGFIQELWKVHMES---CVDASPL-VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVV 532 (829)
Q Consensus 459 ~~~~~~~W~~~~~~---~~~~sp~-v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~ 532 (829)
..+..++|.+.+.+ ...+.|. +. .++++|+++.+|.|+++|+.+|+.+|+..... ....++....+ +.+|
T Consensus 40 ~~~g~~~W~~~~~~~~~~~~~~~~~~~---~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G~i~ 115 (370)
T COG1520 40 NTSGTLLWSVSLGSGGGGIYAGPAPAD---GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-GKIY 115 (370)
T ss_pred ccCcceeeeeecccCccceEeccccEe---eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-CeEE
Confidence 34567889876444 3455562 32 79999999999999999999999999887764 44455555554 5799
Q ss_pred EEEeCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC----Ccccccc
Q 003331 533 VGCYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG----GSIFGSP 606 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~----~~~~~~~ 606 (829)
+++.++.+||+|..+|+++|++...+ .....+++. ++.+|+++.+++++++|..+|+.+|.+... ....+++
T Consensus 116 ~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~ 193 (370)
T COG1520 116 VGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSP 193 (370)
T ss_pred EecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCc
Confidence 99999999999988999999999887 333334443 488999988899999999999999997663 2344556
Q ss_pred eeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCc----------ceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 607 AIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 607 ~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
.+. .+.+|+++. ++.++++|+++ |..+|..+.... ......+ ..++.++.+..++.++|+| .
T Consensus 194 ~~~--~~~vy~~~~~~~~~~~a~~~~~--G~~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~ 268 (370)
T COG1520 194 AIA--SGTVYVGSDGYDGILYALNAED--GTLKWSQKVSQTIGRTAISTTPAVDGGPV-YVDGGVYAGSYGGKLLCLDAD 268 (370)
T ss_pred eee--cceEEEecCCCcceEEEEEccC--CcEeeeeeeecccCcccccccccccCceE-EECCcEEEEecCCeEEEEEcC
Confidence 544 489999988 77899999988 999999532211 1111222 2345567788888999999 9
Q ss_pred CCCEEEEeecCCceeecCcc---cccCCCeEEEEeeC------CeEEEEeCCCCcE--EEEEecCCcccccccccccccc
Q 003331 674 SGSIIWRCRTGGPIFAGPCT---SFALPSQVLICSRN------GSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~---~~~~~~~i~~~t~~------g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
+|+.+|+++....+...+.. ....+|.+|+.... +.+++++...|.. +|.+..........
T Consensus 269 ~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~-------- 340 (370)
T COG1520 269 TGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLST-------- 340 (370)
T ss_pred CCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCCceeccc--------
Confidence 99999999885322222221 12247788887642 4588999877877 89888766222222
Q ss_pred ccccccCCCcEEEEEccCCc-EEEEE
Q 003331 743 KLESCLSIDRLVCICTSSGS-IHILR 767 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~-l~~~d 767 (829)
....++.+|.+..++. ||.+.
T Consensus 341 ----~~~~~g~~y~~~~~~~~ly~~~ 362 (370)
T COG1520 341 ----VAGSDGTLYFGGDDGRGLYAFR 362 (370)
T ss_pred ----ceeccCeEEecccCCceEEEEc
Confidence 2234889999999987 87774
No 135
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.83 E-value=1.2e-17 Score=178.75 Aligned_cols=311 Identities=22% Similarity=0.347 Sum_probs=211.0
Q ss_pred CeEEEEecCC-CcEEEEECCCCcEEEEEEcCC---ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--e
Q 003331 486 DIYLFVGSHS-HKFICADAKRSSVLWEIKLEG---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--E 559 (829)
Q Consensus 486 ~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~ 559 (829)
.+..+..... ......+..+|+.+|.+.... .....+.....++.+|+++.+|.|+++|+++|+.+|+..... .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~ 101 (370)
T COG1520 22 AGTDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA 101 (370)
T ss_pred CCceEEeeccCCceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcce
Confidence 3355555432 335556667799999865332 233344223445789999999999999999999999887764 4
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-c-ccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-S-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+++.. +|.||+++.++.+||+|..+|+.+|++...+ . ....++.. ++.+|+.+.+|.++++|.++ |+.+
T Consensus 102 ~~~~~~~~~-~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~--~~~v~~~s~~g~~~al~~~t--G~~~ 176 (370)
T COG1520 102 QLSGPILGS-DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG--DGTVYVGTDDGHLYALNADT--GTLK 176 (370)
T ss_pred eccCceEEe-CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc--CcEEEEecCCCeEEEEEccC--CcEE
Confidence 555555553 6889999999999999999999999999887 3 33444444 48899998889999999998 9999
Q ss_pred EeeccCCc----ceeeeeeeecCCEEEEEee--CCeEEEEc-CCCCEEEEeecCCceee-----cCcc---cccCCCeEE
Q 003331 638 WLHELEVP----AFASLCITSANRHVICCLV--DGHVVALD-SSGSIIWRCRTGGPIFA-----GPCT---SFALPSQVL 702 (829)
Q Consensus 638 w~~~~~~~----~~~s~~~~~~~~~l~~~~~--~g~i~~~d-~~g~~~w~~~~~~~~~~-----~~~~---~~~~~~~i~ 702 (829)
|.++...+ ...++. ..++.+|+++. ++.++++| .+|...|..+....+-. .+.+ ....++.+|
T Consensus 177 W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 254 (370)
T COG1520 177 WTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVY 254 (370)
T ss_pred EEEecCCccccccccCce--eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEE
Confidence 99876542 112222 46788999887 67899999 89999999543222111 1111 123456778
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC------CcEEEEEeecCccccc
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS------GSIHILRVNLDVTGKE 776 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------G~l~~~d~~~~~~~~~ 776 (829)
.++.+|.++|+|..+|+.+|+++.+..+...+..... ....++.+++.... +.+++++...+.
T Consensus 255 ~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~-------~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~---- 323 (370)
T COG1520 255 AGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTP-------VAGADGKVYIGFTDNDGRGSGSLYALADVPGG---- 323 (370)
T ss_pred EEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEe-------ecCCCccEEEEEeccccccccceEEEeccCCC----
Confidence 8889999999999999999999886222211111100 01124555555432 335666653221
Q ss_pred cccccccceeeeeeccCC-cccccceEECCEEEEeeeCCe-EEEEec
Q 003331 777 NQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDY-IYCIAL 821 (829)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~-l~~~d~ 821 (829)
....|.+...+ .....++..++.+|.+..++. ||++..
T Consensus 324 -------~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~~~ 363 (370)
T COG1520 324 -------TLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRD 363 (370)
T ss_pred -------eeEEEEEeCCCceecccceeccCeEEecccCCceEEEEcc
Confidence 11256666555 344566668999999999997 999853
No 136
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.82 E-value=8.3e-18 Score=169.30 Aligned_cols=217 Identities=23% Similarity=0.390 Sum_probs=161.0
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeee-eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPV-VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
+|.|+++|+.+|+.+|++.........+. ....++.+|+++.++.|+++|+.+|+.+|++...+.....+...+ +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 68899999999999999987332222220 111458899999999999999999999999998776666676665 999
Q ss_pred EEEecCCeEEEEEccCCCceEEEee-ccCCc---ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeec
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLH-ELEVP---AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAG 690 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~---~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~ 690 (829)
|+++.++.++++|..+ |+.+|+. ....+ ..........++.++++..++.++++| .+|+++|++....+....
T Consensus 80 ~v~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKT--GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTT--SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCC--cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 9999889999999888 9999994 43311 122334444588999999899999999 999999999875432111
Q ss_pred C--------cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 691 P--------CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 691 ~--------~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
+ ......++.+|+.+.+|.+.++|..+|+.+|+.. .......+ ...++.+|+++.+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~-------------~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP-------------SVDGGTLYVTSSDGR 223 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE-------------ECCCTEEEEEETTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc-------------eeeCCEEEEEeCCCE
Confidence 0 0112235699999999988888999999999665 33322212 223889999999999
Q ss_pred EEEEEeecC
Q 003331 763 IHILRVNLD 771 (829)
Q Consensus 763 l~~~d~~~~ 771 (829)
|+++|..+|
T Consensus 224 l~~~d~~tG 232 (238)
T PF13360_consen 224 LYALDLKTG 232 (238)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999987
No 137
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=99.82 E-value=1.6e-20 Score=206.65 Aligned_cols=140 Identities=30% Similarity=0.507 Sum_probs=117.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+++++.++.+++++.||+||++..++..... .......++|.|+++++++|+
T Consensus 274 ~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-------~~~~~~~~~G~~~~~~~~~iv 346 (417)
T PF00501_consen 274 KDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPE-------DDIEKPGSVGKPLPGVEVKIV 346 (417)
T ss_dssp TTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETT-------THHSSTTSEBEESTTEEEEEE
T ss_pred cccccccccccccccCChhhccccccccccccceecccccccceeeeccccc-------ccccccccccccccccccccc
Confidence 4688899999999999999999999998666999999999999887643200 011145678999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+|+|+.++.||+++|+.+.+.|.. ++||+|||+|+++++|.++++||.|
T Consensus 347 d~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~g~~d~~G~~~~~GR~~ 411 (417)
T PF00501_consen 347 DPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFID---------------DGWYRTGDLGRLDEDGYLYILGRSD 411 (417)
T ss_dssp CTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEET---------------TSEEEEEEEEEEETTSEEEEEEEGS
T ss_pred cccccccccccccccccccCCccceeeecccccccccccc---------------ccceecceEEEECCCCeEEEEEeeC
Confidence 987 3 35677999999999999999998888888852 4699999999999999999999999
Q ss_pred CcEEEC
Q 003331 171 RTIKIN 176 (829)
Q Consensus 171 d~ik~~ 176 (829)
|+||++
T Consensus 412 ~~i~~~ 417 (417)
T PF00501_consen 412 DMIKVR 417 (417)
T ss_dssp CEEEET
T ss_pred CEEEeC
Confidence 999985
No 138
>PRK09188 serine/threonine protein kinase; Provisional
Probab=99.80 E-value=6.7e-19 Score=182.18 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=106.3
Q ss_pred CcceEecCceEEE-ccCCcEEEEeecCCcEEECC---eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 145 SQTYFRTGDFARR-IQSGDLVFLGRKDRTIKING---QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 145 ~~~~~~TGDl~~~-~~~G~l~~~GR~dd~ik~~G---~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
.++||+|||+|++ |++|+|+|+||.| +| ++|+|. ||++|.+||+|.+|+|++.+++..++.++|+|++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 5689999999998 6999999999998 88 799999 999999999999999999999988999999998763
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 221 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
. ...++|+++++++||. ++|..++++++||+|++|||+|++|+....
T Consensus 281 ~-----~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 281 P-----ADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM 327 (365)
T ss_pred C-----CCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence 2 1236899999999999 999999999999999999999999987653
No 139
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=2.3e-18 Score=200.15 Aligned_cols=153 Identities=36% Similarity=0.628 Sum_probs=133.1
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+|.+++|||+++..+...+....+ ...+.|.||+||++..++.+....... ...++|+|++++.++++|..
T Consensus 486 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~-------~~~piG~p~~n~~~~ild~~ 558 (642)
T COG1020 486 RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE-------SRVPIGRPVANTQLYILDQG 558 (642)
T ss_pred cccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC-------CCCCcceeeCCCeEEEECCC
Confidence 5999999999999999998888764 578999999999887777655443211 15799999999999999854
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
. +.+..||++|+|.++++||+++|+.|.++|... ++|+|||++++.++|.+.++||.|+|||
T Consensus 559 ~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~---------------~~y~tgD~~r~~~dg~~e~lgr~D~qvk 623 (642)
T COG1020 559 LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL---------------RLYRTGDLARPLADGALEYLGRKDSQVK 623 (642)
T ss_pred CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc---------------cCccCCCeeeECCCCeEEEeccccceeE
Confidence 4 456679999999999999999999999999762 4899999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCC
Q 003331 175 INGQRMALEEIEHTLRGHP 193 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~ 193 (829)
++|+||++.|||..+.++|
T Consensus 624 i~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 624 IRGFRIELGEIEAALAEQP 642 (642)
T ss_pred eceEecCcHHHHHHHhcCC
Confidence 9999999999999998875
No 140
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.75 E-value=3.8e-15 Score=143.55 Aligned_cols=307 Identities=11% Similarity=0.057 Sum_probs=214.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
....+..|+.|..-+.|+..+|.+.-....+...+.+..++.++.+|..|..+|.|..|+..+|...|.+.....-....
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 45667778888889999999999776666666666788899999999999999999999999999999986332223334
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
...+...++++|+.||.+++|.+.++.....+..++.....-.+.+++.+++.+..+|.|.+||+++ |.++.+.....
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt--g~p~~~~~~~e 232 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT--GQPLHKITQAE 232 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC--CceeEEecccc
Confidence 4555667888999999999999998665555554444434444555689999999999999999998 98888775322
Q ss_pred cce-eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc------------eeecCcccccCCCeEEEEeeCCeE
Q 003331 645 PAF-ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP------------IFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 645 ~~~-~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~------------~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
... ....+...+..++.|+.++.++..+ .+|+.+.......+ +-+.|..... ....+|+.||+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l--pL~A~G~vdG~i 310 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL--PLAACGSVDGTI 310 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc--chhhcccccceE
Confidence 111 1122333456777788888888888 78888766542111 1111111111 134567889999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 790 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 790 (829)
..||..+-+++.......++....+.. ..+++.++.+|.|+.||+++| +....|
T Consensus 311 ~iyD~a~~~~R~~c~he~~V~~l~w~~-------------t~~l~t~c~~g~v~~wDaRtG-------------~l~~~y 364 (399)
T KOG0296|consen 311 AIYDLAASTLRHICEHEDGVTKLKWLN-------------TDYLLTACANGKVRQWDARTG-------------QLKFTY 364 (399)
T ss_pred EEEecccchhheeccCCCceEEEEEcC-------------cchheeeccCceEEeeecccc-------------ceEEEE
Confidence 999999888887777777665443332 468899999999999999988 333333
Q ss_pred ccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003331 791 ELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 791 ~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
.-+..-+-..++ ..+.+..++.|+....|+.
T Consensus 365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 322221111111 4567777888888877764
No 141
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.74 E-value=1.6e-15 Score=146.15 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=196.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+..+.++...+..|+.|..-+.|+..+|...-....+........++.++.+|.+|..+|.|..|...+|...|++....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 44555555678888889999999999999776666566666666777778889999999999999999999999986333
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
.-+.-....+....++.|+.+|.++.|.+.+ +.....+..+........+.+++++++.+..+|.|.+|| .+|.++.
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 2222233444457888999999999999887 444444444444445667888999999999999999999 9999988
Q ss_pred EeecCCceeecCcccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccc-cccccccccCCCcEEEEE
Q 003331 680 RCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEH-LQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 757 (829)
+...... .-.+++.. .....+..|+.++.++..+..+|+++...+...+ ...+..... -.+........=.+.++|
T Consensus 227 ~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~-~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 227 KITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP-ELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred Eeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc-cccccchhhhhhhhhcccccccchhhcc
Confidence 7663322 22333332 2345678888899999999999999876542111 111111000 000001111123467889
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+-||+|.+||...... +.....+..+.. .... ..+|+.+|.+|.|+.||..+|.++
T Consensus 305 ~vdG~i~iyD~a~~~~-------------R~~c~he~~V~~-l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTL-------------RHICEHEDGVTK-LKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccceEEEEecccchh-------------heeccCCCceEE-EEEcCcchheeeccCceEEeeeccccceE
Confidence 9999999999885422 222223322222 2222 368999999999999999999865
No 142
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=99.72 E-value=7.5e-17 Score=165.56 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=174.8
Q ss_pred chhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccc
Q 003331 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL 84 (829)
Q Consensus 5 ~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 84 (829)
.++|......+.-+.-++-+.-|..+.+++|+.|.++|...+|.+.||+||..+....+.. ....+|+
T Consensus 342 cRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~------------~vGA~G~ 409 (649)
T KOG1179|consen 342 CRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDG------------RVGACGF 409 (649)
T ss_pred HHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecC------------ccccccc
Confidence 3445544332223333444556888999999999999977789999999998754443321 1111221
Q ss_pred ------ccCCcEEEEecC---------CC-----CCCCCCeEEEc----cc-cccccccCCCCCCcccccccCCcccccC
Q 003331 85 ------PISNCDIVLVES---------DT-----VKPDEGEIYAG----GL-CLSNGYFSESTFMPSEYVKLHNNSICNC 139 (829)
Q Consensus 85 ------p~~~~~~~i~d~---------~~-----~~~~~Gel~i~----g~-~~~~gy~~~~~~~~~~f~~~~~~~~~~~ 139 (829)
-+-.+++.-+|+ ++ ++|++|.|+-. .| .-+.||.+..+.|.++...+-+.
T Consensus 410 ~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFk----- 484 (649)
T KOG1179|consen 410 MSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFK----- 484 (649)
T ss_pred hhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhc-----
Confidence 122233322332 22 45677755321 22 22789999888888877665443
Q ss_pred cCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEe
Q 003331 140 SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVL 218 (829)
Q Consensus 140 ~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~ 218 (829)
.++-||.|||+-.+|+.|++||..|..|.+.-.|+||+..|+|.+|.....++++.|.+..-+. ++..=.|.|+.
T Consensus 485 ----kGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~ 560 (649)
T KOG1179|consen 485 ----KGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL 560 (649)
T ss_pred ----cCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence 3789999999999999999999999999999999999999999999999999999997754332 22233444444
Q ss_pred cCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccc
Q 003331 219 KEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 219 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~ 271 (829)
.+. .+...+.+-+++++.||+|.+|..+.+.+++++|.+=|..+..|.+.
T Consensus 561 ~p~---~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 561 DPT---TEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred cCc---ccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 433 33456788999999999999999999999999999999999998764
No 143
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.1e-14 Score=138.99 Aligned_cols=272 Identities=14% Similarity=0.086 Sum_probs=188.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE-EecCCeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVK 561 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~ 561 (829)
...+..|..|+.|.++..||..|..+..+.+.+..-+.+...++|++.|..|+.||.|.+||+++|+++-. +..+....
T Consensus 124 sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~I 203 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWI 203 (480)
T ss_pred cCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccce
Confidence 34567899999999999999999999888888888778899999999999999999999999999987632 22222222
Q ss_pred eeeee-----ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 562 CQPVV-----DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 562 ~~~~~-----~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
....+ .+....+..++.||.++.||...|+++.....+....... -.+..+.+|.++.|++|..|+... |..
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv-rwGG~gliySgS~DrtIkvw~a~d--G~~ 280 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV-RWGGEGLIYSGSQDRTIKVWRALD--GKL 280 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE-EEcCCceEEecCCCceEEEEEccc--hhH
Confidence 22222 2234567778889999999999999888776554433333 334468999999999999999776 654
Q ss_pred EEeeccCCcceeee------------------------------------eeeecCCEEEEEeeCCeEEEEc--CCCCEE
Q 003331 637 LWLHELEVPAFASL------------------------------------CITSANRHVICCLVDGHVVALD--SSGSII 678 (829)
Q Consensus 637 ~w~~~~~~~~~~s~------------------------------------~~~~~~~~l~~~~~~g~i~~~d--~~g~~~ 678 (829)
.-.++.+..-.... +.-..+.+++.|+.+..++.|+ .+.+.+
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 43332221111111 1112245789999999999999 455455
Q ss_pred EEeecCCceeecCcccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCCcEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
-+........... .+..|+ .|..++.|..|..||-.+|+++-.+.. -..++......+ ..++..
T Consensus 361 ~rmtgHq~lVn~V--~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------------sRLlVS 426 (480)
T KOG0271|consen 361 TRMTGHQALVNHV--SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------------SRLLVS 426 (480)
T ss_pred hhhhchhhheeeE--EECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------------ccEEEE
Confidence 4433222221111 112233 456678899999999999999887763 334444433332 678899
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.|.+|.+|+.++.
T Consensus 427 ~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTK 441 (480)
T ss_pred cCCCceEEEEEeeee
Confidence 999999999999854
No 144
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.66 E-value=1.3e-13 Score=142.72 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=186.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+++++.+|.+..||..+++.......+........+.+++..+++++.++.++.||..+++.+..+..+.......
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 99 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence 45788888889999999999888777666555444456677777789999999999999999888877776554333444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+++..+++++.++.++.||..+++....+..+........+.+++..+++++.+|.+..||..+ ++.+..+....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~ 177 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLTGHT 177 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--cccceeEecCc
Confidence 4555556666676699999999998988887765444445555665556666666689999999886 66666555444
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-CCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
.......+.+++..+++++.++.+..|| .+++.+..+.. ...+.... ...++.+++++ .+|.++.||..+++..
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA---FSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE---EcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 3445566666777899998899999999 77777665532 22332221 22234555444 4999999999988887
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
..+............. ..+..+++++.+|.+.+|+
T Consensus 255 ~~~~~~~~~i~~~~~~-----------~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHTNSVTSLAWS-----------PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEccccCCcEEEEEEC-----------CCCCEEEEecCCCeEEecC
Confidence 6665332221111111 2267899999999998874
No 145
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=3.7e-14 Score=128.56 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=184.6
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++-++++......+..|..||+..|.++-++..++.-...+..+.|...+..+..|..++.||.+||++..++..+..-.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV 104 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV 104 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence 34456777777778899999999999999988877655556666677788888889999999999999999888776655
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
....+.++...++.|+.|..+.+||-.+.. ++..+........++.+.+ ..|+.|+.||++..||+.. |...-.
T Consensus 105 NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~--G~l~sD 180 (307)
T KOG0316|consen 105 NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRK--GTLSSD 180 (307)
T ss_pred eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeec--ceeehh
Confidence 556677677888899999999999987653 3443333333344444443 7889999999999999997 765432
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
+ .+.| ..+..++.+++...+++-++.+..+| .+|+++-.+....+ -+...|.....+-.++.|++||.+|.||..+
T Consensus 181 y-~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 181 Y-FGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred h-cCCc-ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 2 2333 36777888899999999999999999 89999866654332 2333343344566789999999999999999
Q ss_pred CcEEEEEecCCcc
Q 003331 718 GNLLWEYSVGDPI 730 (829)
Q Consensus 718 G~~~w~~~~~~~~ 730 (829)
+.++-++..++.+
T Consensus 259 ~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 259 ETQISKLSVVSTV 271 (307)
T ss_pred ceeeeeeccCCce
Confidence 9999888877665
No 146
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.64 E-value=3.6e-13 Score=125.52 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=196.6
Q ss_pred CeEEEEecCCCcEEEEEC-----CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 486 DIYLFVGSHSHKFICADA-----KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~-----~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.+.++.++.|..+..|++ +.|.+...+..+........++.++.+.+.+++|+.+..||+++|+...+|..+...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 345666666776777765 456777777777777778888999999999999999999999999998888888877
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecC--CCEEEEEecCCeEEEEEccCCCceE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
..+..++.++..|..|+.|..+..||.. |.+..+..-+ ....+...+.++ +-+|.-+++|+.+.+||+++ .+.
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~--~~l 184 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN--CQL 184 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC--cch
Confidence 7777788888899999999999999966 4555555443 334445555554 34677788999999999997 555
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
...+..+........+++++.....|..+|.++.+| ..|+.+..+.....+.+..+ ..+....+...+-.|..||.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f---spnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF---SPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe---cCCceeEeeccCCceEEEec
Confidence 555555555567778888888888899999999999 88888887776666655432 22333333344556999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++++.+.+++....-.+....+. .. ..-+...++..++.|..++.|..|...
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~-~c-lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDP-IC-LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cchhhhhhccccccccccccCCc-EE-EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99998876654322111110000 00 000113348899999999999988653
No 147
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.61 E-value=1.5e-14 Score=158.19 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=100.0
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
.++||.+++|||++++++.+.+.+.+ +++++|.||+||++..+ .|... .....+.+.+.++|+|+
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~~~---~c~~~-----------~g~h~~~d~~~vEIvDp 267 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTMCG---ECQAV-----------AGLHVPEDLVHLDVYDP 267 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhheE---EecCC-----------CCccccCCceEEEEEcC
Confidence 46899999999999999999998888 78999999999986221 22110 01122334577889997
Q ss_pred CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc-C----Cc----E
Q 003331 97 DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ-S----GD----L 163 (829)
Q Consensus 97 ~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~-~----G~----l 163 (829)
++ ++|+.|||++.... +........+ --|+|||++++.. + |. +
T Consensus 268 ~~~~~vp~Ge~GELvvT~L~------~~~~r~~~Pl------------------iRYrtgD~~~~~~~~~C~CGr~~~r~ 323 (445)
T TIGR03335 268 RHQRFLPDGECGRIVLTTLL------KPGERCGSLL------------------INYDTEDTTVVISRDRCPCGRTHMRI 323 (445)
T ss_pred CCCCCCcCCCceEEEEEecC------CCCccCCceE------------------EEeecCceEEEecCCCCCCCCCccee
Confidence 75 35678999997642 1000001111 2399999999732 2 32 4
Q ss_pred EEEeecCCcEEECCeeeChHHHHHHHhCC---CCee
Q 003331 164 VFLGRKDRTIKINGQRMALEEIEHTLRGH---PDVV 196 (829)
Q Consensus 164 ~~~GR~dd~ik~~G~~i~~~~iE~~l~~~---~~v~ 196 (829)
...||.||+++++|.+|+|.+||++|.++ +++.
T Consensus 324 ~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 324 LNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred CCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence 45799999999999999999999999994 5554
No 148
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.61 E-value=9.2e-13 Score=123.56 Aligned_cols=268 Identities=10% Similarity=-0.016 Sum_probs=198.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----cE--EEEEecCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----DI--YWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~~--~w~~~~~~ 558 (829)
+..++..+|.||.+..||..|......++++..-+-+.++++.++.|..|..|+..-.|++.+- .. ...+..+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 5678888999999999999998877778888776668889999999999999987666766533 22 23344444
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
...+..-+.+ ++.|+++|.|.+...||+++|+.+-.+..+..-.-+..+.+ +.+..+.|+.|+.-+.||... |...
T Consensus 146 gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--~~c~ 222 (343)
T KOG0286|consen 146 GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--GQCV 222 (343)
T ss_pred ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC--ccee
Confidence 4455544543 78899999999999999999999988876654444444444 456677788899999999998 8888
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccC-CCeEEEEeeCCeEEEEeC
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~ 715 (829)
..+..+.....+..+.+++..+..|+.|+....|| +....+-.++....+.....+.+.. +..++.|..|.+...||.
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 88877777778889999999999999999999999 7777666665433322222222333 345677788899999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
-.|+..-.+..+.+-.+..-+. +++.-+..|+.|..|.+|
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s-----------~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVS-----------PDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cccceEEEeeccCCeeEEEEEC-----------CCCcEEEecchhHheeec
Confidence 8888877666554443333222 236678888888888877
No 149
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.60 E-value=1e-12 Score=135.90 Aligned_cols=272 Identities=18% Similarity=0.172 Sum_probs=179.8
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..+..+.++++.+++++.++.++.||..+++.......+........+.+++..+++++.++.++.||..+++.+..+..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence 44667777778899999999999999999887776665544443455555567899999999999999998877777665
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
.........+.+++..+++++.+|.+..||..+ ++................+.+++..++.++.++.+..|| .+++.
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 544444455555445556666599999999986 676666654433345556665666666666689999999 77777
Q ss_pred EEEeecCC-ceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCC-ccccccccccccccccccccCCCcEE
Q 003331 678 IWRCRTGG-PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 678 ~w~~~~~~-~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (829)
+..+.... .+... ....+ ..+++++.+|.+..||..+++.+..+.... .+.... .. .++..+
T Consensus 170 ~~~~~~~~~~i~~~---~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~-----------~~~~~~ 234 (289)
T cd00200 170 VATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FS-----------PDGYLL 234 (289)
T ss_pred ceeEecCccccceE---EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE-Ec-----------CCCcEE
Confidence 66655332 22211 12223 378888889999999999888776653222 222211 11 125566
Q ss_pred EEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE--CCEEEEeeeCCeEEEEe
Q 003331 755 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI--GGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 755 ~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~l~vg~~~g~l~~~d 820 (829)
++++.+|.|++||..++ +....+......+...... +..++.++.+|.+..|+
T Consensus 235 ~~~~~~~~i~i~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTG-------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCc-------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66666999999998754 1122222111222222232 36888889999998875
No 150
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.60 E-value=8.6e-13 Score=120.85 Aligned_cols=265 Identities=11% Similarity=0.103 Sum_probs=186.7
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVV 566 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~ 566 (829)
|..++.|++|..|.+.||+...++...+.-+....++++++.+.+++ ...|..||..+++. +-+|+.+.....+.-|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 66778999999999999999999888877677788889988888887 45699999988764 6777777555555567
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
..++..+|+|+.||.+..||...-.+...++.. ......++.++...++++..+|.|.+||+.+......-.-+ ....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~ 169 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTS 169 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcc
Confidence 767889999999999999999986665555544 45566777887888999999999999998862221111111 1123
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE------EEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSII------WRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~------w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+..+..++..+..++..|..|+|+ .++... .+++.. +.+.... ..-....|..++.|.+++.|+.++-
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~--lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL--LSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE--ECCCCcEEEeecCCceEEEEecCCc
Confidence 35667777888999999999999999 544322 222221 1222221 1112345667788999999998765
Q ss_pred cEEEEEecCCc--c-ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDP--I-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+.-+..+... - .-..+.. ++.+|+.++.|+...+|+...+
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~------------dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSA------------DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -eeeEEEeecCCceEEeeeecc------------CccEEEecCCCCceeecccccC
Confidence 3323222222 2 2222222 2889999999999999998866
No 151
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.60 E-value=3.6e-14 Score=146.24 Aligned_cols=216 Identities=20% Similarity=0.234 Sum_probs=143.3
Q ss_pred chhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccc
Q 003331 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL 84 (829)
Q Consensus 5 ~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 84 (829)
...+.+......-.+||.+++|+|+++++..+.+.+.+ ++..++.||.||..+.. ...|.... -+..
T Consensus 197 ae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g-~~eC~~~~-----------glhi 263 (438)
T COG1541 197 AEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPG-AGECTERN-----------GLHI 263 (438)
T ss_pred HHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCc-cccccccc-----------CCCc
Confidence 33444444455667999999999999999999999999 88999999999986543 23343211 1222
Q ss_pred ccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 85 PISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 85 p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
.-+...+.|+|++. +.+..|||++.... + ....+ --|+|||++...++
T Consensus 264 ~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~-------~---~~~Pl------------------IRYrtgDit~i~~~ 315 (438)
T COG1541 264 WEDHFIFEIVDPETGEQLPDGERGELVITTLT-------K---EGMPL------------------IRYRTGDITVILSD 315 (438)
T ss_pred chhhceeeeecCCcCccCCCCCeeEEEEEecc-------c---cCcce------------------EEEEcCCeeEeccc
Confidence 33467778888765 34556999886532 1 11112 23999999998653
Q ss_pred ----Cc-----EEEEeecCCcEEECCeeeChHHHHHHHhCCCCee-EEEEEEeecCCceEEEEEEEEecCCCCchHHHH-
Q 003331 161 ----GD-----LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV-DTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL- 229 (829)
Q Consensus 161 ----G~-----l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 229 (829)
|. -.+.||.||+++++|.+|+|..||++|.+.+.+. +-.++... .+....+.+-|+..+.........
T Consensus 316 ~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~~~~~~~~ 394 (438)
T COG1541 316 PCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAEELEDERR 394 (438)
T ss_pred CCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCcccchHHHHH
Confidence 43 4689999999999999999999999999999998 44444333 333445666676665322222111
Q ss_pred --HHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcc
Q 003331 230 --SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264 (829)
Q Consensus 230 --~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~ 264 (829)
..+...+...+.. .+-..++.+.++|+|.. |..
T Consensus 395 ~~~~l~~~~~~~~~~-~~~v~~v~~g~l~r~~~-K~k 429 (438)
T COG1541 395 LAKKLIKNIKSELGV-RVEVELVEPGELPRTEG-KAK 429 (438)
T ss_pred HHHHHHHHHHhhcCC-ceEEEEEeccceecccC-cee
Confidence 3444444444432 22245566678999875 544
No 152
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=5.1e-13 Score=121.26 Aligned_cols=234 Identities=17% Similarity=0.197 Sum_probs=170.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+-+..+|++......|..|..||+..|.++.+|..++ ++....... ++..+..++.|..++.||..||+...++..+
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccc
Confidence 44566678888888889999999999999999998766 444443333 4455666777889999999999999999888
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
........+.++...++.|+.|..+.+||-...+-+++..+........++.+ .+..|..|+.||++..|| ..|.+.
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceee
Confidence 77777777777667788899999999999887556666555444443444443 577899999999999999 888765
Q ss_pred EEeecCCceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccc-cCCCcEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESC-LSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 756 (829)
-.+ .+.++.+. ....+ +-..+++.++.|..+|..||+++-.|+...+... ....+ ..++..++.
T Consensus 179 sDy-~g~pit~v---s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey----------kldc~l~qsdthV~s 244 (307)
T KOG0316|consen 179 SDY-FGHPITSV---SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY----------KLDCCLNQSDTHVFS 244 (307)
T ss_pred hhh-cCCcceeE---EecCCCCEEEEeeccceeeecccchhHHHHHhccccccee----------eeeeeecccceeEEe
Confidence 322 23343332 23334 4577889999999999999999866654332211 00111 123778999
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.||.+|.||+-.+
T Consensus 245 gSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDE 259 (307)
T ss_pred ccCCceEEEEEeccc
Confidence 999999999999765
No 153
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=3.6e-12 Score=134.29 Aligned_cols=286 Identities=14% Similarity=0.106 Sum_probs=204.9
Q ss_pred eCCCeEEEEecCC-CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 483 KDSDIYLFVGSHS-HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 483 ~d~~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
+..++.|.+|+.. |.+..|+.++-..+-+...+..-..+..+++||..+..|+.||.|..||..+|-+.-+|.-+..-.
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 3346778887754 778889887766665555554445688899999999999999999999999999999988777666
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc-ccceeecCCCEEEEEecCC-eEEEEEccCCCceEEEe
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF-GSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWL 639 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~ 639 (829)
....+...++.++..+.||++++||.+.++...++..+.+.. +...+++.+..|.+|+.+. .|++|+.++ |+.+-.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--GqllDi 473 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--GQLLDI 473 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec--Ceeeeh
Confidence 666677778889999999999999999999888888776643 4455666667777777664 588999998 998887
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc--CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD--SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d--~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
...++.......+.+.+..++.+++|.+|..|| .....+-.++....+....+-+ .+..|.+.|.||.|..||.+.
T Consensus 474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC--CCCeEEEEEecceEEEEEhhh
Confidence 777766667778888899999999999999999 3222333344333333332211 245799999999999999988
Q ss_pred CcEEEEEecCCcccccccc---------ccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 718 GNLLWEYSVGDPITASAYI---------DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
+...-..+........-.. .....+..-....++..|.+|.....|.+|+..++.
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 7766443321111000000 000111111124458889999999999999998764
No 154
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1e-12 Score=135.86 Aligned_cols=219 Identities=17% Similarity=0.296 Sum_probs=149.4
Q ss_pred cccCcccccccccccccccc----------ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee----
Q 003331 454 VPRNKRGFIQELWKVHMESC----------VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---- 519 (829)
Q Consensus 454 ~p~~~~~~~~~~W~~~~~~~----------~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---- 519 (829)
+...+..++++.|++.++.- -..+|+.+ ++.+|+.+..+.++++|+.||+.+|+++......
T Consensus 176 In~DNV~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkv----gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~ 251 (773)
T COG4993 176 INADNVGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKV----GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQ 251 (773)
T ss_pred cChhhhhccceeEEEecCcccCCCCcccccccccceEE----CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccc
Confidence 34445668999999998742 14488884 8899999988899999999999999986432110
Q ss_pred --eceEE----------eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee----------------eeeeeecCCC
Q 003331 520 --CSAAV----------LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK----------------CQPVVDAPRQ 571 (829)
Q Consensus 520 --~~~~~----------~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~----------------~~~~~~~~~~ 571 (829)
++-.+ +++..+||..+.|.+|.++|++||++.|.|..++... +.+.+. ..+
T Consensus 252 ~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~-~~~ 330 (773)
T COG4993 252 HQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFG-VKG 330 (773)
T ss_pred cccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCccc-cee
Confidence 01111 1233469999999999999999999999987655321 112221 223
Q ss_pred EEEEecc---------CCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCEEEEEecC---
Q 003331 572 LIWCGSH---------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYVASTS--- 621 (829)
Q Consensus 572 ~i~~gs~---------~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v~t~~--- 621 (829)
.|+.++- .+.+..+|..+|+.+|..+.+ .+.+++..++.+-+.||+...+
T Consensus 331 ~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~p 410 (773)
T COG4993 331 IVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTP 410 (773)
T ss_pred EEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCCh
Confidence 3333321 256788999999999987543 2456777788878889986533
Q ss_pred ---------------CeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCC---EEEEEeeCCeEEEEc-C
Q 003331 622 ---------------GRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANR---HVICCLVDGHVVALD-S 673 (829)
Q Consensus 622 ---------------g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~---~l~~~~~~g~i~~~d-~ 673 (829)
..+.++|+++ |+..|.++...... .-..+..+++ .++..+.+|.+|++| .
T Consensus 411 d~wg~trtp~dekysssivAlD~~T--G~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRr 488 (773)
T COG4993 411 DTWGGTRTPGDEKYSSSIVALDATT--GKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRR 488 (773)
T ss_pred hhccCCCCcccccccceeEEecCCC--cceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcC
Confidence 3588999998 99999987532211 1111222332 345567889999999 9
Q ss_pred CCCEEE
Q 003331 674 SGSIIW 679 (829)
Q Consensus 674 ~g~~~w 679 (829)
+|+++-
T Consensus 489 tGe~lv 494 (773)
T COG4993 489 TGELLV 494 (773)
T ss_pred CCcccc
Confidence 998864
No 155
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.55 E-value=1.2e-12 Score=125.81 Aligned_cols=278 Identities=10% Similarity=0.077 Sum_probs=189.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+..|+.|+.+..||+.||++.-+...+-...-...++.---++|.+..|+.|.|||++..+++..|..+-....+.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 56778888999999999999999987766554444456677666789999999999999999999988776543333344
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+....|++|+.|..++.||..+...+..+..+.....+..+.+-+..|+.++-|+.|..||... |+..-......
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a--gkt~~tlt~hk 319 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA--GKTMITLTHHK 319 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc--CceeEeeeccc
Confidence 4455567899999999999999999988888876666666666665568899999999999999998 87766655555
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
......+..+... .+.......+.+++ ..|..+-.++....+... +....|+.++.|+.+|.+..||.++|--.-.
T Consensus 320 ksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iint--l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 320 KSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINT--LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeee--eeeccCceEEEcCCceEEEEEecCcCccccc
Confidence 4444444444333 33333345688888 777776554433333332 2234577889999999999999998853221
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
.. .+......+...-++.......+..++.+..|.+|..|..+.
T Consensus 397 ~~---t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 397 GQ---TIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc---ccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 11 111111111100111111122377888888888888886553
No 156
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=6.3e-13 Score=128.96 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=187.6
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..++..+.+..+++++..++.|+.|.++..||+.|-.+..+...+.....+...++++..|..|+.+|.|..||+++|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 34445555678888899999999999999999999999998888888777777888899999999999999999999998
Q ss_pred EEEee-ccCCcccccce-----eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC
Q 003331 592 CVYKL-PCGGSIFGSPA-----IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 592 ~~w~~-~~~~~~~~~~~-----~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
.+-+. ..+...+...+ ..+.-.++..++.||.+.+||..- |..+.....+.... +..-.-.++.+|.|+.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~~~lsgHT~~V-TCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCVRTLSGHTASV-TCVRWGGEGLIYSGSQD 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEEEEeccCccce-EEEEEcCCceEEecCCC
Confidence 65332 11111111111 222234667777899999999886 76666554443322 22223347899999999
Q ss_pred CeEEEEc-CCCCEEEEeecCCc------------eeecCc-----------------------ccccCCCeEEEEeeCCe
Q 003331 666 GHVVALD-SSGSIIWRCRTGGP------------IFAGPC-----------------------TSFALPSQVLICSRNGS 709 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~~~~~~------------~~~~~~-----------------------~~~~~~~~i~~~t~~g~ 709 (829)
++|.+|+ .+|+..-.++.... ....++ +..+....+..|+.|..
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 9999999 77766433321110 000000 11122356899999999
Q ss_pred EEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeee
Q 003331 710 IYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA 788 (829)
Q Consensus 710 l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 788 (829)
++.|++..-+ .+-+...+........ ..+++.+|+.++-|..|..||..+|++ +.
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~-----------fSPd~r~IASaSFDkSVkLW~g~tGk~-------------la 403 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVS-----------FSPDGRYIASASFDKSVKLWDGRTGKF-------------LA 403 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEE-----------ECCCccEEEEeecccceeeeeCCCcch-------------hh
Confidence 9999976443 3333222222211111 233488999999999999999988732 22
Q ss_pred eeccCCcc--cccceE-ECC-EEEEeeeCCeEEEEeccccccc
Q 003331 789 KLELQGDI--FSSPVM-IGG-RVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 789 ~~~~~~~~--~~s~~~-~~~-~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++ .|.+ +..... .+. .|..|+.|..|..|+..++++.
T Consensus 404 sf--RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 404 SF--RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred hh--hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 22 2211 111111 233 4555777889999999998864
No 157
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=9.6e-14 Score=131.29 Aligned_cols=270 Identities=15% Similarity=0.164 Sum_probs=198.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEc--------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKL--------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~--------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
+.++.++..||.||.|-.||-.+|+++-..+. .+....+..++.|...+..|+.||.|..|...||.++.+|
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF 301 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh
Confidence 34688999999999999999999987643221 1223446677888788999999999999999999999887
Q ss_pred e-cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 555 Q-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 555 ~-~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+ .+..-..+..++.++..|+.++.|..++.--.++|+++..+..+.+......+.+++..++.++.||.+.+|+.++
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-- 379 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-- 379 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc--
Confidence 6 3444445556666777899999999999999999999988888877777777888889999999999999999887
Q ss_pred ceEEEeeccCCcce--eeeeeee-cCCEEEEEeeCCeEEEEcCCCCEEEEeecCC---ceeecCcccccCCCeEEEEeeC
Q 003331 634 FHTLWLHELEVPAF--ASLCITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRN 707 (829)
Q Consensus 634 g~~~w~~~~~~~~~--~s~~~~~-~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~---~~~~~~~~~~~~~~~i~~~t~~ 707 (829)
++.+-+++...... .+..+.+ +...+.++...+++|+++-.|+++-.+..+. .-|...++ .-.+.-+|+...|
T Consensus 380 teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l-SpkGewiYcigED 458 (508)
T KOG0275|consen 380 TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL-SPKGEWIYCIGED 458 (508)
T ss_pred hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe-cCCCcEEEEEccC
Confidence 77776665443221 2333333 3456778888899999997788887766432 11222111 2246689999999
Q ss_pred CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 708 GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 708 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
+.+|||+..+|++...+..+.......... ++.+.++.-+.||.+..|
T Consensus 459 ~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH-----------PHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 459 GVLYCFSVLSGKLERTLPVHEKDVIGLTHH-----------PHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cEEEEEEeecCceeeeeecccccccccccC-----------cccchhhhhcccchhhhc
Confidence 999999999999988877655433222222 236667777778876655
No 158
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.52 E-value=8.1e-12 Score=136.06 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=197.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++++..++.+..|..||..+|+.+-. +..+..-..+..+...++.++.|+.|.++..||..+|++...+..+......
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC 296 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE
Confidence 378899999999999999999998876 5555544444555444678999999999999999999999988766654443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
. ......+..|+.|..|++|+..+|+.+..+..+........++ ++.++.|+.+|.|.+|++.+ ++.+.....+
T Consensus 297 ~--~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--~~cl~sl~gH 370 (537)
T KOG0274|consen 297 L--TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT--GKCLKSLSGH 370 (537)
T ss_pred E--EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh--ceeeeeecCC
Confidence 3 3234666778899999999999999998887544444444444 59999999999999999997 8888877665
Q ss_pred CcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 644 VPAFASLCITSAN-RHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 644 ~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.....+. ..+. ..++.|+.|+.|.+|| .++ +.+..+.......... ...+..+..++.|+.|..||..+++.
T Consensus 371 ~~~V~sl--~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 371 TGRVYSL--IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred cceEEEE--EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeecccCce
Confidence 4433333 3345 8999999999999999 777 5665555444333221 22345677778899999999999999
Q ss_pred EEEEecC--CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccc
Q 003331 721 LWEYSVG--DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKE 776 (829)
Q Consensus 721 ~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~ 776 (829)
+-.+... ..+.. .. .....+++++.+|.+.+||..++...+.
T Consensus 446 ~~~~~~~~~~~v~~---l~-----------~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSA---LA-----------LGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eeeeccCCcccEEE---ee-----------cCcceEEEEecCCeeEEEecccCchhhh
Confidence 8877764 11111 10 0146788899999999999998865443
No 159
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.51 E-value=3e-13 Score=135.41 Aligned_cols=270 Identities=10% Similarity=0.064 Sum_probs=185.4
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
....+..++.|+.|+.||..+ ++++.+|..+...+..+.++.++..+..+++|+.|..||.+||+++-++..+..+.+.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 356788888999999999876 8888888888777778889999999999999999999999999999999876554443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee-cc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH-EL 642 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~-~~ 642 (829)
..-.++.+.+++|..|+.|..||..+|+++..+..+-..+..+.+-+++.+.+..+.++.+.+|+... .-.+-.. ..
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~--~v~ik~i~~~ 383 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI--PVPIKNIADP 383 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC--Cccchhhcch
Confidence 22223347889999999999999999998887766655556666666567777778889899998665 3222211 11
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCce---eecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPI---FAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~---~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
......+....+.++.+..-+.++.++++. ..--.+-... ..+.. ++..+-..-.++.|..|..+|.++.||.+|
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 111122334455677777777888888876 2111110000 01111 111111112355788899999999999999
Q ss_pred CcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 718 GNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 718 G~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
-+++-+.+.++.. ....+... ....++.++.+|.|.+||
T Consensus 464 ~kl~~~lkah~~~ci~v~wHP~-----------e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQPCIGVDWHPV-----------EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCcceEEEEecCC-----------CcceeEecccCceeEecC
Confidence 9887777666432 22222222 156788888999999885
No 160
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.50 E-value=5.7e-11 Score=120.37 Aligned_cols=307 Identities=15% Similarity=0.142 Sum_probs=204.0
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CCeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGEVKCQ 563 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~~~~~~ 563 (829)
-++..|+.|+.+..|+---=|+..++..+.+...+.-+++||..+...+.||.+++||-+||+.+-.+.. +..-...
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 3688889999888887443455555566677777888999999998888999999999999999988763 2233444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc---cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI---FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~---~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
..+.++...+.+.+.|..+..||..+++++.++..+..+ .-.++.. ++.|+..+.+|.+..+++.+ ++.+..+
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d--~~~~~~i 316 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSD--PSVLKVI 316 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccC--CChhhee
Confidence 567778889999999999999999999998887766542 1122222 47788888899999999988 7777777
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEe-ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~-~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+.....+..+.+++..+|.|+++|.|..|+ .+|..--.. +...+.... +.....+.++..+.|..|..++...+
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~--~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG--MAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE--EeecCCCcEEEEecCCeEEEEecccC
Confidence 76667677788888899999999999999999 666432111 111111111 11223467888888999999987544
Q ss_pred cEEEE--EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcc
Q 003331 719 NLLWE--YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDI 796 (829)
Q Consensus 719 ~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (829)
..--. .+++..... ..+ ...++.+.+.+.+ .|.++.-.++. ....+.- .
T Consensus 395 ~~t~~~~~~lg~QP~~-lav-----------~~d~~~avv~~~~-~iv~l~~~~~~---------------~~~~~~y-~ 445 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKG-LAV-----------LSDGGTAVVACIS-DIVLLQDQTKV---------------SSIPIGY-E 445 (603)
T ss_pred cccccceeecCCCcee-EEE-----------cCCCCEEEEEecC-cEEEEecCCcc---------------eeecccc-c
Confidence 32111 122222111 111 1124466666554 46666533221 1111110 1
Q ss_pred cccceE--ECCEEEEeeeCCeEEEEecccccccc
Q 003331 797 FSSPVM--IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 797 ~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+..++ .+..+.+|..||.|+.|.+..+++.+
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 111111 46789999999999999998776544
No 161
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.1e-11 Score=135.74 Aligned_cols=274 Identities=17% Similarity=0.155 Sum_probs=200.5
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEec
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQT 556 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~ 556 (829)
+.+..++..+..++.++.+..|+..+++ .+-....+........++.++..+..++.|+.|..||. ..++.+.++..
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3344466778888899999999987776 44444445556677889999999999999999999999 56688888887
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
+.....+..+.+.+..+..|+.|+.++.||.++|+++-.+..+....+...+..++..++.++.++.+..||..+ |..
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--~~~ 322 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET--GSK 322 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC--Cce
Confidence 777677777887778999999999999999999999999988887777788888888999999999999999998 663
Q ss_pred E--EeeccCC-c-ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc---eeecCcccccCCCeEEEEeeCC
Q 003331 637 L--WLHELEV-P-AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP---IFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 637 ~--w~~~~~~-~-~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~---~~~~~~~~~~~~~~i~~~t~~g 708 (829)
. -...... + ......+.+++.++++++.++.+..|| ..+...-.+..... -...++ ....+..++.|+.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LSTGGKLIYSGSEDG 401 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc-ccCCCCeEEEEeCCc
Confidence 2 2222221 2 345667778899999999999999999 77766544432211 111111 122345688999999
Q ss_pred eEEEEeCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEc--cCCcEEEEE
Q 003331 709 SIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICT--SSGSIHILR 767 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~G~l~~~d 767 (829)
.|++||..++..+-.+... ....... +.....+.+...+ .|+.+.+|.
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~-----------~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDL-----------SSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceecc-----------ccCCCcCeeeecCcCCCceEEEec
Confidence 9999999998776655544 2211111 1123366777776 567777774
No 162
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=1.8e-10 Score=121.71 Aligned_cols=276 Identities=14% Similarity=0.160 Sum_probs=198.1
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcCCCeEEEeeccCC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+.+...-..+++|-..|..+.+...+-.++..............+...++.|.+|+.. |.|..|+-.+-..+-+.+.+.
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc
Confidence 3444444567777777777788888888888777776555566666567778887654 678888877766666776666
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
....+..+++++..+..|..||.|.+||... |-..-++.-+........+...++.++..+-||+|.+|| ...+---
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 6777888888888999999999999999887 888888877776667777888888999999999999999 7776655
Q ss_pred EeecCCceeecCcccccCCC-eEEEEeeCC-eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE
Q 003331 680 RCRTGGPIFAGPCTSFALPS-QVLICSRNG-SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
++..+.++..+ |+..+..| .+.+|+.|. .|+.|+.+||+++-.+..+....+...+. ..+..++.+
T Consensus 429 Tft~P~p~Qfs-cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-----------~~~~~LaS~ 496 (893)
T KOG0291|consen 429 TFTSPEPIQFS-CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-----------PDGSLLASG 496 (893)
T ss_pred eecCCCceeee-EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc-----------cccCeEEec
Confidence 66666655332 44444444 455666554 59999999999987666554433322222 237899999
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCCccc---ccceEECCEEEEeeeCCeEEEEeccccc
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF---SSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+.|.+|.+||.-... ..........++. .+| ++..|-+.|-||.|.+||.+.+.
T Consensus 497 SWDkTVRiW~if~s~------------~~vEtl~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSS------------GTVETLEIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cccceEEEEEeeccC------------ceeeeEeeccceeEEEEcC--CCCeEEEEEecceEEEEEhhhce
Confidence 999999999986431 1122223333322 233 68899999999999999987653
No 163
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=1.3e-12 Score=128.68 Aligned_cols=270 Identities=9% Similarity=-0.015 Sum_probs=206.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
++..|..|+.+|.+..|+..++..+-.+..+..-...+.+.+. +..+..++.||.+..|+..+-.++-.+..+..-.+
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 5778899999999999999999888888777655556666654 45789999999999999888778777776666667
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++.++.++++|..-..||..+++.+.....+.....++++..++..+..|+.|..=.+||+.+ |..+-.+..
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--gr~im~L~g 343 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--GRCIMFLAG 343 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc--CcEEEEecc
Confidence 778888999999999999999999999988877766666667777777677777888888778999998 888877777
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+...+.++.+++++-.+..|+.|+++.+|| ..-+.+...+...++.+........+..+..+++|+.+..|...+..++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 766667888888888899999999999999 6666666666555544433222233456778899999999999988877
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
-.+..+..-..+.-+ ..++..+..++.|.++..|.
T Consensus 424 ksLaGHe~kV~s~Di-----------s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDI-----------SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEe-----------ccCCceEEEeccCceeeecc
Confidence 655443332222111 12367888888888887773
No 164
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.49 E-value=4.9e-12 Score=121.77 Aligned_cols=276 Identities=16% Similarity=0.134 Sum_probs=186.7
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+..+.+.+..+..|+.|+.+..||+.||+++-+...+-+..-...++...-+++.++.|+.+.|||++..+.+..+..+-
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl 235 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL 235 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc
Confidence 44555555567788889999999999999988776554444445666667789999999999999999988887765443
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
...-...+.+..+.|+.++.|..+.+||..+ -..+..+..+.....+..+.+.+..++.|+.|++|..|| ..|+..-
T Consensus 236 S~V~~L~lhPTldvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred ceeEEEeccccceeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 3222333343357899999999999999998 555555555555555666666788999999999999999 8888765
Q ss_pred EeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc
Q 003331 680 RCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 759 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 759 (829)
........... +..-.....+..+....+.+|+.-.|.+.-.+.....+..+..... ++.+++|++
T Consensus 314 tlt~hkksvra--l~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns------------D~v~~~G~d 379 (460)
T KOG0285|consen 314 TLTHHKKSVRA--LCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS------------DGVLVSGGD 379 (460)
T ss_pred eeecccceeeE--EecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeecc------------CceEEEcCC
Confidence 54433221111 1111233455544445699999999988766555554444333332 889999999
Q ss_pred CCcEEEEEeecCccccccccccccceeeeeeccCCcccc------cce-EECCEEEEeeeCCeEEEEecc
Q 003331 760 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS------SPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 760 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+|.++.||-++|... +.......+|.+.+ +.. ..+.+|+.|..|..|..|...
T Consensus 380 ng~~~fwdwksg~ny----------Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNY----------QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ceEEEEEecCcCccc----------ccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999998877332 22222233333222 211 134578888778888888543
No 165
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.49 E-value=9e-11 Score=110.41 Aligned_cols=272 Identities=12% Similarity=0.060 Sum_probs=186.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC----e--EEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----R--CVY 594 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg----~--~~w 594 (829)
+.-++.|..+++.++.||.|..||..|.....-+..+....-..++.+.+..|.+|+.|+.-..|+.++. . ...
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeee
Confidence 4456667788999999999999999998887777777777777788888999999999987777776643 2 222
Q ss_pred eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-
Q 003331 595 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d- 672 (829)
.+..+....+...+.+ ++.|+.++.|.+...||+++ |+..-.+..+.....+..+.+ +.+....|+.|.....||
T Consensus 140 ~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 2333334444444443 68899999999999999998 988887776665556666666 566777788899999999
Q ss_pred CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCC
Q 003331 673 SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 673 ~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
+.|...-.+..... +-+..+ .-.+..+..|+.|+....||.+..+.+-.|.....+.....++ ...++
T Consensus 217 R~~~c~qtF~ghesDINsv~f--fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~---------FS~SG 285 (343)
T KOG0286|consen 217 RSGQCVQTFEGHESDINSVRF--FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA---------FSKSG 285 (343)
T ss_pred cCcceeEeecccccccceEEE--ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE---------Ecccc
Confidence 88877666554332 222111 1123457788999999999999988877666443322111111 23348
Q ss_pred cEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEE
Q 003331 752 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~ 819 (829)
.++++|..|.++++||.-.+ +......-+.+.++..-+ ++-.+-.|+.|-.|..|
T Consensus 286 RlLfagy~d~~c~vWDtlk~-------------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG-------------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cEEEeeecCCceeEeecccc-------------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 99999999999999997644 222222223334444333 23356667777777665
No 166
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.4e-10 Score=110.82 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=169.4
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEEecCCe
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+++.+..+.+.+.|..+..||..+|++.-+.....--.-.+++......+..++. |..|..+++.+.+.+..|..+..
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 4567778888888889999999999988776554322234566665566666665 77899999999999999988887
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEE-EecCCeEEEEEccCCCceEEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV-ASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v-~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+..+.+.++.++.++.|+.++.||.+..++.-.....+. ..+++++ .|.+++ +.....|..||++.-...+.-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~ 178 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFT 178 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECC-CCcEEEEecCCCeEEEEEecccCCCCce
Confidence 777777777778899999999999999987666554443332 2334565 344444 444447888887652223333
Q ss_pred eeccC---CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC--cccccCCCeEEEEeeCCeEEE
Q 003331 639 LHELE---VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP--CTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 639 ~~~~~---~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~--~~~~~~~~~i~~~t~~g~l~~ 712 (829)
.+... ........++++++.+.+++..+.++.+| -+|.++..++........+ +...-....|+.|+.||.|++
T Consensus 179 tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 179 TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 33332 23335667888999999999999999999 8999887766432221111 111112346777888899999
Q ss_pred EeCCCCcEEEEEecC
Q 003331 713 FEQESGNLLWEYSVG 727 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~ 727 (829)
|+.++|+.+-....+
T Consensus 259 w~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 259 WNLETGKKVAVLRGP 273 (311)
T ss_pred EEcCCCcEeeEecCC
Confidence 999999987666543
No 167
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.45 E-value=5e-11 Score=109.49 Aligned_cols=261 Identities=11% Similarity=0.118 Sum_probs=178.4
Q ss_pred ccccccccccccccce-------EEeeCCCeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEeeCCcEEEEE
Q 003331 464 ELWKVHMESCVDASPL-------VVLKDSDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVG 534 (829)
Q Consensus 464 ~~W~~~~~~~~~~sp~-------v~~~d~~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~~~~v~vg 534 (829)
+.|+..+|.|+..-+- +-...+++.|.++...+ |..||..+++. +-++..+...+.++.+..+|.-+|.|
T Consensus 23 RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 23 RFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred eeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec
Confidence 4588888888632110 11123455666666665 99999988864 56777776666778898999999999
Q ss_pred EeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCcccccceeecCCC
Q 003331 535 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHD 613 (829)
Q Consensus 535 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~ 613 (829)
+.||.+..||...-.....|+....+. ..+..+..+-+++|+.+|+|++||..+..+...... ......+..+..++.
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 999999999998866655666664443 345556677899999999999999987655443322 233455667777778
Q ss_pred EEEEEecCCeEEEEEccCCCc----eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeec-CCcee
Q 003331 614 VLYVASTSGRLTAISVKALPF----HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRT-GGPIF 688 (829)
Q Consensus 614 ~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~-~~~~~ 688 (829)
.+..++..|.+|+|+.-+... .++-+++..........++++.+++..++.+.++++|+.++-+.-+... ++.-.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce
Confidence 888888899999999765211 2333444444444566778889999999999999999943333222222 22111
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.-.|.....+..|+.++.|+.+..|+...|+.+..+..
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 11222223355788889999999999999998766543
No 168
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.44 E-value=1.8e-12 Score=129.90 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=180.0
Q ss_pred CCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
.+.++..++.|+.|+.|+.-+ ++++.+|..+........+...+..++.++.|+.+..||.+||+++-++..+......
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 445677888999999999866 8999999888766666667777788999999999999999999999998876544433
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
-.-.++.+.+++|+.++.|..||..+ |+.+..+........++.+.+.+.+.+..+.++.+.+|+ ..+-.+ ++...
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-k~i~~ 382 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-KNIAD 382 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc-hhhcc
Confidence 22233347888999999999999998 888777766655556777777788888888888888888 554433 22233
Q ss_pred CceeecCcccccCCCeEE-EEeeCCeEEEEeCCCCcEEEEEec--CCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 685 GPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQESGNLLWEYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~-~~t~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
....+.|++..-.++..+ .-+.++.++++....--.....+. +..+...++. -...+++++++.|+.+|
T Consensus 383 ~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~--------v~fSpDG~~l~SGdsdG 454 (503)
T KOG0282|consen 383 PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ--------VDFSPDGRTLCSGDSDG 454 (503)
T ss_pred hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee--------EEEcCCCCeEEeecCCc
Confidence 345666766544444444 447788888887432111111110 1111100000 11245699999999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE---ECCEEEEeeeCCeEEEEe
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~l~vg~~~g~l~~~d 820 (829)
.++.||-++- +++...+.+......... ....+..++.+|.|..||
T Consensus 455 ~v~~wdwkt~-------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTT-------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhh-------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999997753 223222322211111111 236778888899998875
No 169
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.44 E-value=2.2e-10 Score=107.25 Aligned_cols=273 Identities=11% Similarity=0.058 Sum_probs=182.3
Q ss_pred CCcEEEEEEeCCEEEEEEcC-----CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 527 DFSQVVVGCYKGKIYFLDYL-----TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
+.+.++.++.|..+..|++. .|.++..+..+.-.....++..++.+.+.+++|+.++.||..+|+...++..+..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 34567778888888888753 4667777777666666666777888999999999999999999999888887777
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC--Ccceeeeeeeec--CCEEEEEeeCCeEEEEc-CCCC
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSA--NRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
..-+..++.++..|..|+.|.++..||.. |....+.... ..-.....+.+. +-.+..++.|+.+.+|| .+-+
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 66777788878899999999999999977 4555554433 334455666666 55777788999999999 6666
Q ss_pred EEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
+...+.......+.. ....||. +..|..+|.++.||...++-+.++.....+.+..+.. +.+..
T Consensus 184 l~~~~~gh~~~v~t~--~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-------------nrywL 248 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTV--TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-------------NRYWL 248 (315)
T ss_pred hhhccccccccEEEE--EECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-------------CceeE
Confidence 554443332222221 1223554 4567789999999999999988877766665544433 33333
Q ss_pred EEccCCcEEEEEeecCccccccccccccceeeee-eccCCcccccceE--ECCEEEEeeeCCeEEEEecc
Q 003331 756 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK-LELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
+....-.|.+||..++..-..+... .... .+.....--+... ++..||.|-.+|.|..|...
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d-----~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLD-----GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchhhhhhcccc-----ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3444556999999876321111100 0000 0000111112222 36689999999999888653
No 170
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.43 E-value=6.6e-10 Score=116.22 Aligned_cols=265 Identities=12% Similarity=0.129 Sum_probs=168.2
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 567 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 567 (829)
++.++.++.++.||..+++....+..+... ....++++++.+|+ +..++.|+.||..+|+.+..+..+... ....+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 81 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFALH 81 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCC-CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEEC
Confidence 345567899999999999988777755443 35677778777765 456789999999999987766544333 234456
Q ss_pred cCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC-eEEEEEccCCCceEEEeeccCCc
Q 003331 568 APRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 568 ~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
++++.+|+++ .++.++.||..+++.+..+..+.. ...+.+.+++..++++..++ .++.+|.++ ++..........
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-PEGMAVSPDGKIVVNTSETTNMAHFIDTKT--YEIVDNVLVDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-cceEEECCCCCEEEEEecCCCeEEEEeCCC--CeEEEEEEcCCC
Confidence 6667777764 578999999999888776654332 23455666667777777654 456678776 655443322221
Q ss_pred ceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCce----eecC-cccccCC-CeEEEE-eeCCeEEEEeCC
Q 003331 646 AFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPI----FAGP-CTSFALP-SQVLIC-SRNGSIYSFEQE 716 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~----~~~~-~~~~~~~-~~i~~~-t~~g~l~~~d~~ 716 (829)
.....+.+++..+++++ .++.+..|| .+++.+-++....+. ...+ .+....+ ..+|++ ..++.+..||.+
T Consensus 159 -~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 -PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 13345666777787665 478999999 888765443321100 0001 1112223 345665 345679999999
Q ss_pred CCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 717 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 717 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
+++++-....+..+....+ .+++..++++. .+|.|.+||..++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~------------~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAF------------TPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCcEEEEEEeCCCcceEEE------------CCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9888654433332222111 22367788764 5899999999865
No 171
>PTZ00297 pantothenate kinase; Provisional
Probab=99.42 E-value=5.8e-13 Score=160.11 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=143.3
Q ss_pred CCccEEEEecC--CCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 18 SSLKLLVLSGE--VLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 18 ~~lr~i~~gGe--~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
..+|.+++||. +++..+. . ++++...||+||+. +..... .....|.|+|+++++|.+
T Consensus 757 Grlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~---~~~~~~-----------~~~~~G~PlpgvEvKI~~ 815 (1452)
T PTZ00297 757 GCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF---FLPSEG-----------VFCVDGTPAPSLQVDLEP 815 (1452)
T ss_pred CCeEEEEECCCccccChHHh-----C--CceEEEecceEEee---eecCCC-----------CcccCCeecCceEEEEcc
Confidence 57999999983 5553332 2 57788899999953 211111 111249999999999986
Q ss_pred CCC--CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 96 SDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 96 ~~~--~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+. ..+..|||+++ |+++|+.|.+.+ ++| ++||.|.|+||++|+|
T Consensus 816 ~~E~~~~~~~GEIlvr-------~~kdpe~T~e~~-----------------~gW---------~~dG~L~IidRkKdli 862 (1452)
T PTZ00297 816 FDEPSDGAGIGQLVLA-------KKGEPRRTLPIA-----------------AQW---------KRDRTLRLLGPPLGIL 862 (1452)
T ss_pred cccccCCCCCCeEEEE-------ECCChHHHHHhh-----------------CcC---------ccCCeEEEEeccccce
Confidence 422 23346999995 457787776521 233 4799999999999999
Q ss_pred EE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC--------------------chHHHHH--
Q 003331 174 KI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT--------------------SSEIFLS-- 230 (829)
Q Consensus 174 k~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------------------~~~~~~~-- 230 (829)
|. +|++|.|+.||..+..+|.|.+++|++.... .++|+|++..... ..+++.+
T Consensus 863 kls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~ 938 (1452)
T PTZ00297 863 LPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYA 938 (1452)
T ss_pred ECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhH
Confidence 99 9999999999999999999999999987654 3788887763211 1111111
Q ss_pred --HHHHHH---H--hcCCCCCcCCeEEEeC-cc-----cCCCCCCcchhhhccccccccccccc
Q 003331 231 --SIKSWV---S--SKLPLAMIPNRFVFMD-SL-----PMTSSGKVDYASLSASTSFTISAQHD 281 (829)
Q Consensus 231 --~l~~~l---~--~~l~~~~~p~~~~~~~-~l-----P~t~~GKi~r~~l~~~~~~~~~~~~~ 281 (829)
.+++.+ . ..+..+.+++.+++++ +| -+|++.|+.|+.+.+.|...++..+.
T Consensus 939 ~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297 939 SSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYS 1002 (1452)
T ss_pred HHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhc
Confidence 222222 1 1256678888777754 45 47999999999999888776665554
No 172
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.42 E-value=9.1e-10 Score=111.86 Aligned_cols=306 Identities=12% Similarity=0.077 Sum_probs=196.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.+....+.||++++||-+||+..-.+. .+.........++|..++...+.|.++..||..+.++..++..+..+.
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 45666667788999999999999988776 333444577888899999999999999999999999987776654422
Q ss_pred ---eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 562 ---CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 562 ---~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+.. ++.|++-+.+|.+..+++.++.++..+..+...+....+.+++..+|.++.+|.|..|+..+ |..--
T Consensus 281 dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~--g~~~~ 356 (603)
T KOG0318|consen 281 DQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS--GTSDR 356 (603)
T ss_pred ceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC--ccccc
Confidence 122233 56778888899999999999998877777776777778888889999999999999999876 53211
Q ss_pred ee-ccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-C-CCCEEE-EeecCCceeecCcccccCCC-eEEEEeeCCeEEE
Q 003331 639 LH-ELEVPAFASLCITS-ANRHVICCLVDGHVVALD-S-SGSIIW-RCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYS 712 (829)
Q Consensus 639 ~~-~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~-~g~~~w-~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~ 712 (829)
.. +.+.... ..+.. ..+.++..++|..+..++ . +|--.. ..+.+..... +....++ .+.+.+.+ .|..
T Consensus 357 ~~g~~h~nqI--~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~---lav~~d~~~avv~~~~-~iv~ 430 (603)
T KOG0318|consen 357 LAGKGHTNQI--KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG---LAVLSDGGTAVVACIS-DIVL 430 (603)
T ss_pred cccccccceE--EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee---EEEcCCCCEEEEEecC-cEEE
Confidence 11 1111111 12222 337888888899998887 3 221111 1222221111 1223343 55555554 4777
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003331 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
+.-.++-.. .+..-.....+ ..+++..+++|..||.|++|.+..+... ......+.
T Consensus 431 l~~~~~~~~--~~~~y~~s~vA------------v~~~~~~vaVGG~Dgkvhvysl~g~~l~----------ee~~~~~h 486 (603)
T KOG0318|consen 431 LQDQTKVSS--IPIGYESSAVA------------VSPDGSEVAVGGQDGKVHVYSLSGDELK----------EEAKLLEH 486 (603)
T ss_pred EecCCccee--eccccccceEE------------EcCCCCEEEEecccceEEEEEecCCccc----------ceeeeecc
Confidence 764443332 22111111111 1234889999999999999988754211 11112233
Q ss_pred CCcc---cccceEECCEEEEeeeCCeEEEEecccccc
Q 003331 793 QGDI---FSSPVMIGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 793 ~~~~---~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
.+.+ ..+| ++.+|..+.-.+.+..||.++++.
T Consensus 487 ~a~iT~vaySp--d~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 487 RAAITDVAYSP--DGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cCCceEEEECC--CCcEEEEeccCCcEEEEEcccCce
Confidence 3332 1222 345666677788999999988765
No 173
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.42 E-value=3e-10 Score=134.40 Aligned_cols=281 Identities=10% Similarity=0.061 Sum_probs=173.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCC----c----EEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRS----S----VLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg----~----~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
++.++..+..|+.|+.|..||..+. . .......... ....++.. .+..+++++.|+.|..||..+++.+.
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK-LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCc-eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 3345677889999999999997532 1 1111111122 12334433 35688999999999999999999888
Q ss_pred EEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 553 TFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+..+........+.+ ++..+++|+.|+.++.||..+++.+..+.....+.+.....+++..+++++.+|.|+.||..+
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 8766554444445553 456788999999999999999987766654433322222233467888999999999999876
Q ss_pred CCce-EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC------CEEEEeecCCceeecCcccc-cCCCeEE
Q 003331 632 LPFH-TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG------SIIWRCRTGGPIFAGPCTSF-ALPSQVL 702 (829)
Q Consensus 632 ~~g~-~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g------~~~w~~~~~~~~~~~~~~~~-~~~~~i~ 702 (829)
++ .+.....+........+. ++..++.++.|+.|..|| ..+ +.+..+........ ++.. ..++.+.
T Consensus 650 --~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~--~v~~s~~~~~la 724 (793)
T PLN00181 650 --PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN--FVGLSVSDGYIA 724 (793)
T ss_pred --CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee--EEEEcCCCCEEE
Confidence 43 222232233233334443 577888999999999999 532 33333332211111 1111 1245788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+|+.||.|+.|+...+...|.+..... ............+........+..+++++.+|.|.+|+.
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 899999999999888877766543221 100000000000011112234778999999999999974
No 174
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.40 E-value=6.8e-11 Score=128.89 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=186.2
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEE-EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
++.+..++.+..|..||..+|..+-. +..+........+...++.++.|+.|..+..||..+|++...+..+.......
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 46889999999999999999998876 55443333333344357889999999999999999999999887655544333
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
.+. ...+..|+.|.+|.+|+..+ |..+-....... ...++..+++.++.|+.++.|.+|| .+++.+...+...
T Consensus 298 ~~~--~~~~~sgs~D~tVkVW~v~n--~~~l~l~~~h~~--~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 298 TID--PFLLVSGSRDNTVKVWDVTN--GACLNLLRGHTG--PVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred Ecc--CceEeeccCCceEEEEeccC--cceEEEeccccc--cEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 333 35666678999999999998 877766653222 2233444688999999999999999 8999887766432
Q ss_pred c-eeecCcccccCCCeEEEEeeCCeEEEEeCCCC-cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 686 P-IFAGPCTSFALPSQVLICSRNGSIYSFEQESG-NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 686 ~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
. +.+. ..+....++.|+.|+.|..||..++ +.+-.+..+..+.... ...+..+..++.||.|
T Consensus 372 ~~V~sl---~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-------------~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 372 GRVYSL---IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-------------LLRDNFLVSSSADGTI 435 (537)
T ss_pred ceEEEE---EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-------------ccccceeEeccccccE
Confidence 2 2222 1222268999999999999999998 6665555544443211 2237788889999999
Q ss_pred EEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003331 764 HILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 764 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.+||..++.. ....+-+ -..++.....+..++.++.+|.+..||+.+++..
T Consensus 436 k~WD~~~~~~-------------~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 436 KLWDAEEGEC-------------LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEeecccCce-------------eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 9999987632 2222221 0111111112578889999999999999998864
No 175
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.40 E-value=1.2e-10 Score=116.60 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=185.7
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.....+|..+.+|.+||.+..|+ .+|.++-++..+.....+.-....+.+|..++-|+.+..||..+|+....+...
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 4556777889999999999999999 788888777666555555556667788999999999999999999988877665
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
....-..... +++.+...+.+|.++++.+.. -.+.-++..+..........+.+..+..++.|+++..|+ .++...
T Consensus 318 s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEEe-cCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 4331111111 235566666788787776654 334444444444445566666678888899999999998 444332
Q ss_pred EEeecCC-ce---eecCc---ccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccC
Q 003331 679 WRCRTGG-PI---FAGPC---TSF-ALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 679 w~~~~~~-~~---~~~~~---~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
..+.... .+ ..+|. ... ..+-.+..++.|+.|..||...|..+..+ +...++++..+..+
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~----------- 463 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN----------- 463 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC-----------
Confidence 2222111 11 22221 111 12234666678999999999999999887 66777776655544
Q ss_pred CCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccc-cceEECCEEEEeeeCCeEEEEecc
Q 003331 750 IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS-SPVMIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+.+++.|+.||.|.+|+.+++ +++..+.-.+.+|. .-...+++|-+.-.+|.+.++|+.
T Consensus 464 -g~ylAsGs~dg~V~iws~~~~-------------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 -GRYLASGSLDGCVHIWSTKTG-------------KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CcEEEecCCCCeeEeccccch-------------heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 899999999999999999876 55555555554432 111245677777778888888863
No 176
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.40 E-value=1.2e-10 Score=116.62 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..|..|+.+|.+..||. +|..+-.+..+...+.+.-....|.+|..++-|+++..||..+|.....+..+.....-.
T Consensus 246 ~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 4667888999999999995 577777766666555666777788899999999999999999999988887665431111
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
-+. +...+.+.+.|+.|+.+-.....++-++..+...++.+-+.+.+..|..++.|+++..|+... +.....+..+.
T Consensus 325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~--~~~~~~l~~Hs 401 (524)
T KOG0273|consen 325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ--SNSVHDLQAHS 401 (524)
T ss_pred EEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC--Ccchhhhhhhc
Confidence 122 234566777888888777666667766665555555566666567778888899999998554 22222222222
Q ss_pred cceeeeeee---------ecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 645 PAFASLCIT---------SANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 645 ~~~~s~~~~---------~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
..+.+...+ ..+..+..++.++.|.+|| ..|..+..+. ...++++..+.+. +..+..|+.||.|..|
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~--g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN--GRYLASGSLDGCVHIW 479 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC--CcEEEecCCCCeeEec
Confidence 111111111 1244667777899999999 9999998874 4456666654332 3468888999999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+.++|++.-.+.....+...-+..+ ++++.++..+|.+.++|..
T Consensus 480 s~~~~~l~~s~~~~~~Ifel~Wn~~------------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STKTGKLVKSYQGTGGIFELCWNAA------------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cccchheeEeecCCCeEEEEEEcCC------------CCEEEEEecCCCceEEEec
Confidence 9999999887776666544333322 7889999999999998864
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.4e-10 Score=117.01 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--eee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~~ 562 (829)
++++||....+|.|.-||+.+++++...+..+....++++.+.+..+.+||.||.++.++...+++......... -.-
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 688999999999999999999999988888888888999999888999999999999999888988766544322 222
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----C----cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----G----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+..+.+++..|..|+.||.|.+||.++|..+...... . -+++...+. ++.|..|...|.|..||...
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~-- 234 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF-- 234 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC--
Confidence 3344555556999999999999999999887733221 1 133444444 48899999999999999888
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|+.+...........+.+..++++++++++.++.++-|.
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 877776666555556666777778888888888888777
No 178
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=6e-12 Score=119.31 Aligned_cols=202 Identities=11% Similarity=0.118 Sum_probs=163.6
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
+.++-+...+..|+.||.|..|-..||.++.+|+ .+..-.++..++.|+..+..++.|..+...-.++|+.+..+..+.
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs 348 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS 348 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence 3345556778889999999999999999998876 444455677889999999999999999999999999999888887
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc---ccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS---IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
....-..+.+++..|+.++.||.+..|+.++++++-++...+. +.+...+..+...+++....+.+|+.+.. |.
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---GQ 425 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---GQ 425 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---ce
Confidence 7777778888889999999999999999999999988876542 33333445555678888888899999987 77
Q ss_pred EEEeeccC---CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 636 TLWLHELE---VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 636 ~~w~~~~~---~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+-.+..+ ...|.+.++++.+..+|+...|+.+|||+ .+|++-......
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 77666543 34567778888999999999999999999 899887666543
No 179
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.36 E-value=9.6e-10 Score=130.11 Aligned_cols=286 Identities=8% Similarity=0.040 Sum_probs=171.8
Q ss_pred CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----c----EEEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEE
Q 003331 516 GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----D----IYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 516 ~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~----~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d 586 (829)
.....+..++.++..+++|+.|+.|..||..+. . ..........+ ....+.. .+..|.+++.||.|..||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL-SGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce-eeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 334556778888889999999999999996532 1 11112112222 2223322 356788899999999999
Q ss_pred cCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeee-eecCCEEEEEee
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI-TSANRHVICCLV 664 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~-~~~~~~l~~~~~ 664 (829)
..+++.+..+..+...+.+..+.. ++..++.++.+|.+..||+.+ +..+..+..... ..+..+ ..++..+++|+.
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~~~-v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTKAN-ICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecCCC-eEEEEEeCCCCCEEEEEeC
Confidence 999998888766655455555553 456788899999999999987 665555443322 223333 234678899999
Q ss_pred CCeEEEEc-CCCCE-EEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC------cEEEEEecCCccccccc
Q 003331 665 DGHVVALD-SSGSI-IWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG------NLLWEYSVGDPITASAY 735 (829)
Q Consensus 665 ~g~i~~~d-~~g~~-~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~ 735 (829)
+|.|++|| .+++. +...... ..+.... ...+..++.++.|+.|..||..++ +.+..+...........
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~---f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVR---FVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEE---EeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 99999999 66542 2222221 2232221 223567888999999999998753 33333332222111111
Q ss_pred cccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee--ccCCcccccceE--ECCEEEEee
Q 003331 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL--ELQGDIFSSPVM--IGGRVFVGC 811 (829)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~--~~~~l~vg~ 811 (829)
....++++++|+.||.|++|+.......... .... ....... ......+++... .+..|+.|+
T Consensus 716 -----------~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~-~~~~-~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 716 -----------LSVSDGYIATGSETNEVFVYHKAFPMPVLSY-KFKT-IDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred -----------EcCCCCEEEEEeCCCEEEEEECCCCCceEEE-eccc-CCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 1223789999999999999997643110000 0000 0000000 001122222222 345888899
Q ss_pred eCCeEEEEec
Q 003331 812 RDDYIYCIAL 821 (829)
Q Consensus 812 ~~g~l~~~d~ 821 (829)
.+|.|.+|+.
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999975
No 180
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.33 E-value=7.5e-12 Score=119.90 Aligned_cols=275 Identities=13% Similarity=0.091 Sum_probs=175.6
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
+.-|++.++.|..|++|..||.++-.++.....+ +.+. ++.-+...|+.|+.|.++..||.+||+++-.+-.+-..
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL---CLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL---CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEE---eeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce
Confidence 3345567899999999999998776666544333 2332 33334578888999999999999999998766544333
Q ss_pred cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEe
Q 003331 603 FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC 681 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~ 681 (829)
.-...+.. ++++..+.|..+.+||....+-..+-+. +.+...+...+..++++++.++.|.+|..|+ .+++.+-..
T Consensus 280 VLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrV-LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl 356 (499)
T KOG0281|consen 280 VLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRV-LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTL 356 (499)
T ss_pred eEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHH-HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhh
Confidence 33334443 8888888899899998775221111000 1111112223444677888899999999999 888877554
Q ss_pred ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
..... ...|. ...+..+..|+.|.+|..||...|+.+..++.+.......-++ +..|..|..||
T Consensus 357 ~gHkR--GIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-------------~krIVSGaYDG 420 (499)
T KOG0281|consen 357 NGHKR--GIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-------------NKRIVSGAYDG 420 (499)
T ss_pred hcccc--cceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-------------Cceeeeccccc
Confidence 43322 22222 2335567788999999999999999877666555544333232 67899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEecccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg 824 (829)
+|.+||...+..-.... .. .-+.......|.+| ..-++.-.|...+.+..+..||..++
T Consensus 421 kikvWdl~aaldpra~~--~~-~Cl~~lv~hsgRVF-rLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPA--ST-LCLRTLVEHSGRVF-RLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eEEEEecccccCCcccc--cc-hHHHhhhhccceeE-EEeecceEEEeccCCCeEEEEEcCCC
Confidence 99999998763211000 00 00001111222332 23345567888888999999998765
No 181
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.1e-10 Score=114.84 Aligned_cols=269 Identities=13% Similarity=0.070 Sum_probs=172.6
Q ss_pred CCeEEEEecCCCcEEEEECC-CCcEE--EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Cee
Q 003331 485 SDIYLFVGSHSHKFICADAK-RSSVL--WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~-tg~~~--w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~ 560 (829)
.+.++..+|.|.+...|+.. ++++. -+...+...+.-..+++|+.++++.+.+..+..||+.||..+..+..+ +..
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 45666666666655555432 23322 222233334456678899888888888888999999999998877655 344
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE--EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
.++.+..+++..+++|+.|++++.||.. |+++ |+..-. .......+..++..++..+.+..+..|+.++. ...-
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~--~dr~ 390 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGKYVLLVTVDKKIRLYNREAR--VDRG 390 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCcEEEEEecccceeeechhhh--hhhc
Confidence 5566777788889999999999999954 5543 433211 22334455566788888888888999987752 1111
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--c-eeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--P-IFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
.... ...+.+..++.++..+.+.-.+..+..|| ...+++-++.... . +..+ |.....+..|..|++|+.||.|+
T Consensus 391 lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 391 LISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEE
Confidence 1122 22346667777777777777778888888 6555544433211 1 1111 22222345688899999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+|+++-.+..+.......... ..+...++.+++||+|.+|-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVswN----------P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWN----------PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEecC----------CCCHHHhhccCCCCeEEEecCC
Confidence 99999998876554322111111 1124567788899999999654
No 182
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.32 E-value=2.4e-09 Score=114.85 Aligned_cols=314 Identities=16% Similarity=0.177 Sum_probs=193.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~ 564 (829)
=+.|.+|+.+|.+..||.++++.+.+++.......+...++-=+.|.+|+.+|.|..+|.+.++++.+|+.. +.+....
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 467999999999999999999999887754432223333333347899999999999999999999999886 5554443
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-C-Ccccc------ccee----ecCCCEEEE---------------
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-G-GSIFG------SPAI----DEVHDVLYV--------------- 617 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~-~~~~~------~~~~----~~~~~~l~v--------------- 617 (829)
.-.++.-.+.+|+..|.+..||.+..+..|.... + +.+.. .|++ .++.-.+|+
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 3344444556677779999999998888876542 1 11100 0100 000011121
Q ss_pred ---------------------EecCCeEEEEE---------------cc-------------------------------
Q 003331 618 ---------------------ASTSGRLTAIS---------------VK------------------------------- 630 (829)
Q Consensus 618 ---------------------~t~~g~l~~~~---------------~~------------------------------- 630 (829)
+..|+.+..++ ..
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 11111111111 00
Q ss_pred --------CCCceEEEeeccCC--------c-------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee----
Q 003331 631 --------ALPFHTLWLHELEV--------P-------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR---- 682 (829)
Q Consensus 631 --------~~~g~~~w~~~~~~--------~-------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~---- 682 (829)
...-...|.+.... . ...+.+++.-++..++|+..|.|-.|| ++|-....+.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 00001223322110 0 113445566688899999999999999 8987766652
Q ss_pred cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 683 TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
..+++....+ ...+..+..++.+|.+..||.++..++-+.+.+..+....+... .+.+.++..+=.
T Consensus 492 h~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~------------s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 492 HKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV------------SDLLAIALDDFS 557 (910)
T ss_pred ccCceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh------------hhhhhhhcCcee
Confidence 2223322211 12244577788899999999988888777776666544333322 566777778888
Q ss_pred EEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 763 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
|.++|..+...-+. +.-.++-+....+ ++..|..++.|+.|..||+-++.+
T Consensus 558 I~vvD~~t~kvvR~-------------f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 558 IRVVDVVTRKVVRE-------------FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred EEEEEchhhhhhHH-------------hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 99999886532222 2222222222222 466888899999999999999875
No 183
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.31 E-value=1.6e-10 Score=114.19 Aligned_cols=273 Identities=11% Similarity=0.050 Sum_probs=199.0
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
..+.++.+++.++.|+++|.+..|+..++..+-++..+..-.....+.+. +..+.+++.||.+..|+..+-.++-.+.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~ 258 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE 258 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh
Confidence 34566778889999999999999999999888888776655555555543 4578999999999999988777777776
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.+..-.+...+.+++..|..++.|..-..||+.+ +..+-..+.+.....+.++..++..+..|+.|..-.+|| .+|.
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhccccc--chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 6666667778888889999999999999999998 766666666666667788888888888888888888899 9998
Q ss_pred EEEEeec-CCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEE
Q 003331 677 IIWRCRT-GGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 677 ~~w~~~~-~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (829)
.+-.+.. ..++++.. ...+|. +..|+.|+...+||...-+.++.+..+.+..+-..+.. ..+.++
T Consensus 337 ~im~L~gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p----------~~g~fL 403 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVA---FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP----------QEGYFL 403 (459)
T ss_pred EEEEecccccceeeEe---ECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc----------cCCeEE
Confidence 8765543 23455544 333554 67788999999999998888877776666554433321 237889
Q ss_pred EEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccceEE-CCEEEEeeeCCeEEEEe
Q 003331 755 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPVMI-GGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 755 ~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d 820 (829)
..++.|+.+.+|...+. +...+. ...+.+++-.+.. +..+..++.|..+..|.
T Consensus 404 ~TasyD~t~kiWs~~~~-------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTW-------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCc-------------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999976643 111111 2233454433333 34566677788777664
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.31 E-value=4.4e-09 Score=106.36 Aligned_cols=291 Identities=14% Similarity=0.184 Sum_probs=176.1
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CC-eeeeeeeeecCCC
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CG-EVKCQPVVDAPRQ 571 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~-~~~~~~~~~~~~~ 571 (829)
+.+..||-..++..-..+........+.+.+-+..+.+.+..+.+|+|+.++|.+..+..+ .+ ....+..+. .++
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-eng 258 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENG 258 (626)
T ss_pred cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc-CCC
Confidence 4566777655554444444444455667777777788888899999999998877654322 22 223333444 467
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeee
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASL 650 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~ 650 (829)
.+++|..+|.++.|+..+-+.......+ +.+++-..+. ++.|+.|..|..|..||-+ -+.+-..+++...-.--
T Consensus 259 dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~---y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 259 DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDN---YRKLRETELPEQFGPIR 333 (626)
T ss_pred CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--CccEeecCccceEEecccc---ccccccccCchhcCCee
Confidence 7999999999999998776665544443 4455444443 4888889999999999833 33333333332211112
Q ss_pred eeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 651 CITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
.+....+.+++|+..+.|.-=+ +++..+-..-.+.........+ .++.+..++.|+.+..|+ +-+++|......+
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP 409 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--ChhheeeccCcceEEEcc--CCceeEEEEecCc
Confidence 2333444588888766655433 3332221111111111111111 134566778899999999 6789999887776
Q ss_pred cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce--EECCEE
Q 003331 730 ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV--MIGGRV 807 (829)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~l 807 (829)
..+..+.. .+ .+++|+..|...++|..+. .......- ++.++... .++..+
T Consensus 410 ~~~~~fhp------------sg-~va~Gt~~G~w~V~d~e~~-------------~lv~~~~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 410 AECADFHP------------SG-VVAVGTATGRWFVLDTETQ-------------DLVTIHTD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred eeEeeccC------------cc-eEEEeeccceEEEEecccc-------------eeEEEEec-CCceEEEEEcCCCCEE
Confidence 65443322 24 8999999999999998753 11111111 22222111 157899
Q ss_pred EEeeeCCeEEEEeccc
Q 003331 808 FVGCRDDYIYCIALET 823 (829)
Q Consensus 808 ~vg~~~g~l~~~d~~t 823 (829)
-+|+.|+.||.|-...
T Consensus 463 Avgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEecCCCeEEEEEECC
Confidence 9999999888886543
No 185
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.6e-10 Score=106.18 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=152.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...+.|.++++||.+..||..+...+-.++....+ ...++.+ ...+|+|+.||.|..+|+.+|.... ...++.....
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~pl-L~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~c 99 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPL-LDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRC 99 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCce-eeeeccC-CceEEEeccCceEEEEEecCCccee-eccCCCceEE
Confidence 45778999999999999998876665556655544 3455655 4689999999999999999887754 3334444443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.......+.+++|++|+.|..||+.+....-.+..+..+++ ++-.+++|++|+.+..+..||+.+ -..-.+....
T Consensus 100 i~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~---~~v~g~~LvVg~~~r~v~iyDLRn--~~~~~q~reS 174 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC---MDVSGNRLVVGTSDRKVLIYDLRN--LDEPFQRRES 174 (323)
T ss_pred EEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE---EeccCCEEEEeecCceEEEEEccc--ccchhhhccc
Confidence 44445578899999999999999987444444444443333 233458999999999999999886 3322211111
Q ss_pred Cc--ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC----CEEEEeec-----CC-c-eeecCccccc-CCCeEEEEeeCC
Q 003331 644 VP--AFASLCITSANRHVICCLVDGHVVALD-SSG----SIIWRCRT-----GG-P-IFAGPCTSFA-LPSQVLICSRNG 708 (829)
Q Consensus 644 ~~--~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g----~~~w~~~~-----~~-~-~~~~~~~~~~-~~~~i~~~t~~g 708 (829)
.- ..-+.++.+.....++++.+|.+.+-. .+. +..+.++- .+ . ++....+.+. ..++++.|..||
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 11 113445556667788888999988744 222 22222221 11 1 1111111111 246789999999
Q ss_pred eEEEEeCCCCcEEEEEe
Q 003331 709 SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~ 725 (829)
.|.+||+.+.|.+-++.
T Consensus 255 ~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLA 271 (323)
T ss_pred eEEEccCcchhhhhhcc
Confidence 99999999887765543
No 186
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.6e-09 Score=99.13 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=156.9
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeec
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~ 597 (829)
.+..++++|..+.+.+.|..|..||..+|+.+.+.....--.....+......+..++. |..|+.++..+.+.+..+.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 46778888888888888889999999999998876554222222334334455555554 6789999999999999998
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C--C
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--S 674 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~--~ 674 (829)
.+.....+..+.+.++..+.++.|..++.||++. -+..-......+ ...++.+.+-...++...+.|..|| + +
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecC--CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccC
Confidence 8888888888888788899999999999999885 232222222222 1233444444444455555788888 3 2
Q ss_pred CCEEEEeecCCcee-ecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccc---cccccccccccccccccC
Q 003331 675 GSIIWRCRTGGPIF-AGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT---ASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 675 g~~~w~~~~~~~~~-~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 749 (829)
+.+.-.+....+.. --..+.... +..+.++|..+.++.+|+-+|.++-++.....-. ..... .+
T Consensus 174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f-----------tP 242 (311)
T KOG1446|consen 174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF-----------TP 242 (311)
T ss_pred CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE-----------CC
Confidence 22222222221100 000011222 4468889999999999999999887766433322 11111 23
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003331 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++..|+.||.|++|+.+++
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCC
Confidence 4889999999999999999876
No 187
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=9.6e-10 Score=120.43 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=177.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEc-CCCeEEEeec
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKLP 597 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~-~tg~~~w~~~ 597 (829)
+..++.++..+..++.++.+..|+..+++ .+.....+........+.+++..+..++.|+.++.||. ..+..+..+.
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 46678888898889899999999987777 44444334444555567777778999999999999999 6668888888
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.+.....+..+.+++..++.|+.|+.+.+||..+ |+.+-.+..+........+..++..++.++.++.+.+|| .+|.
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 7777777788888778899999999999999998 888888877777777788888999999999999999999 8887
Q ss_pred EE--EEeecCCceeecCcccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 677 II--WRCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 677 ~~--w~~~~~~~~~~~~~~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
.. -............++.+ -....++.++.|+.+..||..+++..-.+.....-....+.. .....+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 393 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP--------TLSTGGKL 393 (456)
T ss_pred eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc--------cccCCCCe
Confidence 32 22221111100111122 234578889999999999999998876555433321111000 01233789
Q ss_pred EEEEccCCcEEEEEeecC
Q 003331 754 VCICTSSGSIHILRVNLD 771 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~ 771 (829)
+++|+.++.|++||..++
T Consensus 394 i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred EEEEeCCceEEEEeCCcc
Confidence 999999999999999865
No 188
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.29 E-value=9.6e-10 Score=104.15 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=158.5
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCC-CcEEEE--EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR-SSVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT 547 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t-g~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t 547 (829)
-.++..||. .+..+..||.|+.|.+|+.+. |...-+ ....+ .....+.++++..+++|+-|+.+..||+.+
T Consensus 30 IS~l~FSP~-----~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 30 ISALAFSPQ-----ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred hheeEeccc-----cCceEEecccCCceEEEEEecCCcccchhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 344555662 467777999999999999865 554432 22223 345778999999999999999999999999
Q ss_pred CcEEEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003331 548 GDIYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 548 G~~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
|+..-.-...+.++..-.+.. ....|.+||+|.+|..||.+.-+++-+..+.....+.-+. ...+.+++.+..|.+
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAV 180 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEE
Confidence 977654344445555444432 1236789999999999999999999988888776665543 367888999999999
Q ss_pred EEccCCCceEEEeeccCCc--ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC--CEEEEeec-------CCceeecCccc
Q 003331 627 ISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLVDGHVVALD-SSG--SIIWRCRT-------GGPIFAGPCTS 694 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g--~~~w~~~~-------~~~~~~~~~~~ 694 (829)
|++++ +....+.-...- -.-+.++..+.....+|+.+|.+.... ..+ +.-+.+.- ...+++...+.
T Consensus 181 ynL~n--~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLEN--PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCC--CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99976 332222111111 113445555666668999999887765 333 33232221 11244443332
Q ss_pred cc-CCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 695 FA-LPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 695 ~~-~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+- ..|.+.....||.+..||.+....+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhh
Confidence 21 3467777778999999997654433
No 189
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.28 E-value=1.4e-09 Score=102.96 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=179.6
Q ss_pred CCCeEEEEecCCCcEEEEECC-CCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAK-RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++..+..|..|..|+.|+.. .-+-.|..+.+...+-..-...++..|+..+.|.+++.||.++|+...++..+..+..
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN 136 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN 136 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence 356677788899999999954 3344577777765544556677888999999999999999999999998888776654
Q ss_pred eeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 563 QPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 563 ~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
+..... .-..|-.|+.|+.+..||..+...+..+...-. ..+..+.+..+.+..|.-|+.|-.||+.. +.......
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq-ltAv~f~d~s~qv~sggIdn~ikvWd~r~--~d~~~~ls 213 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ-LTAVGFKDTSDQVISGGIDNDIKVWDLRK--NDGLYTLS 213 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhcccccee-EEEEEecccccceeeccccCceeeecccc--CcceEEee
Confidence 433222 223455688999999999998776665533222 23344555567899999999999999976 55566666
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C---CCCE-EEEeecC-----CceeecCcccccCCCeEEEEeeCCeEE
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-S---SGSI-IWRCRTG-----GPIFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~---~g~~-~w~~~~~-----~~~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
...........+.++..+..-+.+..+..|| . .++. +-.+... .+.+... ..-....+-+|+.|..+|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs--wsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS--WSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee--ccCCCCccccccccceEE
Confidence 6666666677777888888888889999888 3 2222 2222211 1111111 111234577888899999
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEE
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 765 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~ 765 (829)
.||..+-.++++.+......... ...+....+..++.|.+||.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~-----------~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEV-----------DFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecccccEEEEcCCcceeEEEe-----------eecCCCcEEEEeccCceeEe
Confidence 99988778877765433322111 11223677788888887774
No 190
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=6.3e-09 Score=108.75 Aligned_cols=271 Identities=11% Similarity=0.102 Sum_probs=162.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
.+++++.|+.|+.||..+++.+..+..+..+. ...+.+++..+|+ ++.++.++.||..+++.+..+..+... ....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEE
Confidence 45567779999999999999888877554443 3455666666764 567789999999999887766544332 33456
Q ss_pred ecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC-eEEEEc-CCCCEEEEeecCC
Q 003331 609 DEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-~i~~~d-~~g~~~w~~~~~~ 685 (829)
+++++.+|+++ .++.+..||+.+ ++.+........ .....+.+++..++++..++ .+..+| .+++.......+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLAEIPVGVE-PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEeEeeCCCC-cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 66667788765 478899999987 666655543322 23456666777777776654 456678 6776654433222
Q ss_pred ceeecCcccccCC-CeEEEEe-eCCeEEEEeCCCCcEEEEEecCCcccc-ccccccccccccccccCCCcEEEEE-ccCC
Q 003331 686 PIFAGPCTSFALP-SQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVCIC-TSSG 761 (829)
Q Consensus 686 ~~~~~~~~~~~~~-~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G 761 (829)
.... +....+ ..+++++ .+|.|+.||.++++.+-.+........ ...... ......++..++++ ..++
T Consensus 158 ~~~~---~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 158 RPRF---AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV-----GIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CccE---EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc-----ceEECCCCCEEEEEcCCCC
Confidence 2111 112223 4566665 488999999999987654432211000 000000 00012235666664 3466
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-eCCeEEEEeccccccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIYCIALETQHLE 827 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~-~~g~l~~~d~~tg~~~ 827 (829)
.+.+||.+++. ....... +.......+ .+..||++. .+|.|..||.++++..
T Consensus 230 ~i~v~d~~~~~-------------~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 230 RVAVVDAKTYE-------------VLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEEEECCCCc-------------EEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 79999987541 1111111 111222222 455778764 5899999999998853
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=6.1e-10 Score=117.70 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=203.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++..|+.+..+..+..|+..+|+++...+. +........+.+.+..+..|+.|+.+..||...+.+...+..++.+.++
T Consensus 73 d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVss 152 (775)
T KOG0319|consen 73 DEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSS 152 (775)
T ss_pred CccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEE
Confidence 477899999999999999999988754443 3333345667777778889999999999999999999999887888888
Q ss_pred eeeecC--CCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 564 PVVDAP--RQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
..+.+. ...++.|..|+.+++||..++.. +.....+.+-..+..+..++..++.++.|..++.||..+ -+.+-..
T Consensus 153 l~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~--~~~l~~l 230 (775)
T KOG0319|consen 153 LLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ--YKKLKTL 230 (775)
T ss_pred EEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh--hhhhhee
Confidence 777653 34478899999999999987654 222233334445555555567788888899999999764 3333322
Q ss_pred ccCCcceeeeeeeec-----CCEEEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 641 ELEVPAFASLCITSA-----NRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
..... ..+.....+ +.+++..+.+|.+..+| .+++.+.+.... .+-+ ..+......+.++..+.+..++.|
T Consensus 231 p~ye~-~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~-~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 231 PLYES-LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI-DHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred chhhh-eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh-hcceeccccCceEEEEccceEEEE
Confidence 22221 123333333 45777777788899999 777776544322 1111 111122234567777788889999
Q ss_pred eCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003331 714 EQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 714 d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
|.++.++.-.+-.. ..+...-+.. +.++.++++++.+.+.+|+..+-. -.-+.-
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG-----------~e~~~laVATNs~~lr~y~~~~~~--------------c~ii~G 363 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLG-----------PEESHLAVATNSPELRLYTLPTSY--------------CQIIPG 363 (775)
T ss_pred EccccEEehhhcCCchhheeeeecC-----------CccceEEEEeCCCceEEEecCCCc--------------eEEEeC
Confidence 99888876443222 2222222221 237899999999999999776431 111223
Q ss_pred CCcccccceE-ECC-EEEEeeeCCeEEEEecc
Q 003331 793 QGDIFSSPVM-IGG-RVFVGCRDDYIYCIALE 822 (829)
Q Consensus 793 ~~~~~~s~~~-~~~-~l~vg~~~g~l~~~d~~ 822 (829)
+.+.+.+..+ ..| .|..|+.|..+..|..+
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 3345555553 344 66668889999888664
No 192
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=99.24 E-value=3.8e-11 Score=94.29 Aligned_cols=70 Identities=47% Similarity=0.625 Sum_probs=61.3
Q ss_pred HHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC--CeEEEeCc-ccCCCC
Q 003331 184 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP--NRFVFMDS-LPMTSS 260 (829)
Q Consensus 184 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~~~~-lP~t~~ 260 (829)
|||++|.+||+|.+|+|++.++...+..++|++++ ..++|+++++++||.|++| ..++.+++ ||+|++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~---------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~ 71 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL---------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS 71 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE---------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe---------eecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence 79999999999999999999998888999999988 1278999999999999999 66666677 999999
Q ss_pred CC
Q 003331 261 GK 262 (829)
Q Consensus 261 GK 262 (829)
||
T Consensus 72 GK 73 (73)
T PF13193_consen 72 GK 73 (73)
T ss_dssp SS
T ss_pred CC
Confidence 98
No 193
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.24 E-value=1.6e-10 Score=106.20 Aligned_cols=268 Identities=11% Similarity=0.118 Sum_probs=181.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++-.|+.++.|+.=..-+-.||.-+-+|..+...+.++++..+.-....++.|-+-..||+-||..+..++..- +.-+.
T Consensus 28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkh-ivk~~ 106 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKH-IVKAV 106 (334)
T ss_pred CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh-eeeeE
Confidence 34456666777766666677887666777776666677776554445556667677889999999998887544 44445
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
.++.+.+.+++|+.+.-++.||.+.-+. .-.+..+ +.+.....+. .+..++..+.+++|..||..+ |+...+...
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT--gt~v~sL~~ 183 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT--GTEVQSLEF 183 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc--CcEEEEEec
Confidence 6777788999999998888888764321 1111111 2222222222 357788889999999999998 998888877
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+.+. .+..++.+ +.++.-++.++|..+| .+-.++-.+..+.++.+....+ ..+...+|..|..+|.||-.||..+
T Consensus 184 ~s~V-tSlEvs~d-G~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P--~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 184 NSPV-TSLEVSQD-GRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP--KKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred CCCC-cceeeccC-CCEEEEecCceeEEeccccccceeeccCccccccccccC--CCceEEecCcceEEEEEeccCCcee
Confidence 6664 45555544 4555556678899999 7767777777776665554322 2345667788999999999999987
Q ss_pred EEEe--cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 722 WEYS--VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 722 w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
-.+. ..+++.+..+. +++....+|+.||+|.+|....++
T Consensus 260 ~~~nkgh~gpVhcVrFS------------PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFS------------PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eecccCCCCceEEEEEC------------CCCceeeccCCCceEEEEEecCCC
Confidence 6642 23344333222 336777789999999999876553
No 194
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.23 E-value=5.6e-10 Score=115.11 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=165.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-- 559 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-- 559 (829)
+.|..+.+|+||.+| ++.||..+|+..-.-..+........+.+-.+.+|+|+++| ++..++++ |.+..-+.
T Consensus 171 v~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~sn~~~~l 244 (671)
T COG3292 171 VFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRASNWGPML 244 (671)
T ss_pred eeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccccccCCCC
Confidence 457889999999998 88899999997654322221111233444557899999666 88888655 55433211
Q ss_pred --eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee-ccC--CcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 560 --VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-PCG--GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 560 --~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~-~~~--~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
-+......+..+.+|+|+.+| +..+....+.+.... +.+ -+...+.. .+.++.+|+++.+| +..+.... -
T Consensus 245 p~~~I~ll~qD~qG~lWiGTenG-l~r~~l~rq~Lq~~~~~~~l~~S~vnsL~-~D~dGsLWv~t~~g-iv~~~~a~--w 319 (671)
T COG3292 245 PSGNILLLVQDAQGELWIGTENG-LWRTRLPRQGLQIPLSKMHLGVSTVNSLW-LDTDGSLWVGTYGG-IVRYLTAD--W 319 (671)
T ss_pred cchheeeeecccCCCEEEeeccc-ceeEecCCCCccccccccCCcccccccee-eccCCCEeeeccCc-eEEEecch--h
Confidence 122334556788999999876 444443433332211 111 11122233 33468899999877 44444332 1
Q ss_pred eEEEeeccC-Ccc--eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE-eecCCceeecCcccccCCCeEEEEeeCCe
Q 003331 635 HTLWLHELE-VPA--FASLCITSANRHVICCLVDGHVVALD-SSGSIIWR-CRTGGPIFAGPCTSFALPSQVLICSRNGS 709 (829)
Q Consensus 635 ~~~w~~~~~-~~~--~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~~g~ 709 (829)
...-.+... .-. .........+..++..+..|.+.+.+ .+|..+-. +..-+...+.. .++.++.+|+++.+.+
T Consensus 320 ~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~--~~d~~g~lWlgs~q~G 397 (671)
T COG3292 320 KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTT--LEDSRGRLWLGSMQNG 397 (671)
T ss_pred hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchh--hhccCCcEEEEecccc
Confidence 110001110 000 01112222355667776677788888 88876533 22222222222 2455889999999978
Q ss_pred EEEEeCCC-CcEEEEEecCCcccccc--ccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccccccee
Q 003331 710 IYSFEQES-GNLLWEYSVGDPITASA--YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQE 786 (829)
Q Consensus 710 l~~~d~~t-G~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 786 (829)
+..|+.++ +..+-. .+...++. .+.+ ..++.+|+|+.+| |...+++.+.--.. -.
T Consensus 398 Lsrl~n~n~~avlde---~agl~ss~V~aive----------d~dnsLWIGTs~G-lvk~~pe~~~v~n~--------ln 455 (671)
T COG3292 398 LSRLDNKNEWAVLDE---DAGLPSSEVSAIVE----------DPDNSLWIGTSGG-LVKRDPESGRVLNL--------LN 455 (671)
T ss_pred hhhhccCCccccccc---ccCCcccceeeeee----------cCCCCEEEeccCC-eEecCccccchhcc--------cc
Confidence 99999777 333211 11111111 1111 1155699999887 55555554311000 00
Q ss_pred eeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccc
Q 003331 787 FAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 787 ~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+....++++.+...-+ .++.||++..+| ++.|+.+..-+
T Consensus 456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~ 495 (671)
T COG3292 456 PGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMF 495 (671)
T ss_pred cccCcCCcchhhhhccCCCCceEEEecce-eeeecccccee
Confidence 1111223333332222 478999998765 78888765544
No 195
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=8.8e-10 Score=106.97 Aligned_cols=239 Identities=14% Similarity=0.093 Sum_probs=156.5
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGG 600 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~ 600 (829)
..+.++.-.+++++.|++|++||..||++.-....+........++..+..+...+.|-.+..||..+- +++.....+.
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~ 193 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE 193 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc
Confidence 344455456677778999999999999986555444433444556656666777776655677775541 1111122234
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
...+++++-+.++.|..++.|..+..|+.++ |-.+.++.....-.-...+..++..+..++.+.++.+|- .+++..-
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 5667777777789999999999999999998 888877766555444555555555555666778888877 5552111
Q ss_pred EeecCC---------ceeecCcccccC-----CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003331 680 RCRTGG---------PIFAGPCTSFAL-----PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 680 ~~~~~~---------~~~~~~~~~~~~-----~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
.+.... +..+.|.+.... ...+..++.|+.|..||..+|..+.++....+-.....+.
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-------- 343 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-------- 343 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc--------
Confidence 110000 111122222111 2367788999999999999999998887655544333332
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCcc
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDVT 773 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~ 773 (829)
+.|.+|+...+|++|.+||.+++..
T Consensus 344 ---p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 344 ---PGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ---CCCeEEEEEecCCcEEEEEecccee
Confidence 2388999999999999999997743
No 196
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.22 E-value=1e-10 Score=112.26 Aligned_cols=273 Identities=12% Similarity=0.061 Sum_probs=172.8
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
-+++.+..|..|.+|..||.++-........+.+. -.++.-+...++.|+.|.++..||.+||+++.++-.+-+..-.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh 282 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH 282 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEE
Confidence 36778999999999999999887666554444432 2344455568889999999999999999998876555444444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEE-eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+. +|++++.+.|..+..||...-..+- ..-.-+...+..+++-++..|+.++.|.++..|+..+ ++.+-....
T Consensus 283 lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st--~efvRtl~g 358 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST--CEFVRTLNG 358 (499)
T ss_pred EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc--eeeehhhhc
Confidence 4444 4899999999999999976532110 0001122222223333447888888899999999887 877765544
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+.... .+....+..++.|+.|.+|..|| ..|..+--.+...... .++.+ .+..|..|.+||+|..||..++.--
T Consensus 359 HkRGI--AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv--RciRF-d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 359 HKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRF-DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccc--eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhh--hheee-cCceeeeccccceEEEEecccccCC
Confidence 43322 22333466677788899999999 8888765444332221 22333 3568999999999999998776421
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.- ...........++.- ..-....+.-.|...+.+.+|.+||..++
T Consensus 434 ra---~~~~~Cl~~lv~hsg-RVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 434 RA---PASTLCLRTLVEHSG-RVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred cc---cccchHHHhhhhccc-eeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 10 000000000000000 00001223567788888999999998865
No 197
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.22 E-value=1.2e-09 Score=109.28 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=182.6
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE---EEEe---------------cCCeeeeeeeeecCCCEEEEeccCC
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ---------------TCGEVKCQPVVDAPRQLIWCGSHDH 580 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~---w~~~---------------~~~~~~~~~~~~~~~~~i~~gs~~g 580 (829)
..++++++++.++|.++.+++|..|+..+|+.. |... .+..-..+.++..++.++.+|..|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 446778888889999999999999999999843 3221 1111223455667788899999999
Q ss_pred eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE
Q 003331 581 NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI 660 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~ 660 (829)
.+..||..|++.+..+..+.....+.++......+|.++.|..+-.|+++. ...+-+...+............+..+-
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--~s~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--LSYVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--hHHHHHHhCCccceeeechhcccceEE
Confidence 999999999999888777766777777877678899999999999998775 222222222222333344444456667
Q ss_pred EEeeCCeEEEEc-C-CCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc-ccc
Q 003331 661 CCLVDGHVVALD-S-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YID 737 (829)
Q Consensus 661 ~~~~~g~i~~~d-~-~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~ 737 (829)
+|..|.++..|. . .-++++.-. . .+..|+....+..+..|+.+|.|+.|+..+.+++.......++...+ .+.
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~-~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGG-E---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred eccccceeEEEeccccceeeeeCC-C---CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 777788888887 3 334443322 1 12334445567789999999999999999999998877655543321 000
Q ss_pred cccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEee
Q 003331 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGC 811 (829)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~ 811 (829)
.+.=+..-+.....++++.|+.+|.|.+|....+.. ..+.+..+++.|-+.+-... .+..|++|+
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCcc---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 000001112344578999999999999998886621 12445555555544332222 344588875
No 198
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.21 E-value=2.6e-09 Score=113.02 Aligned_cols=315 Identities=13% Similarity=0.113 Sum_probs=203.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEE-EEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-CC
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVL-WEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CG 558 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~-w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~ 558 (829)
.+..+..||+...+ .|..+|..||+.. ....... .......+.+|+..++......-+..|+..+|+++..... +.
T Consensus 27 ~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He 105 (775)
T KOG0319|consen 27 WSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE 105 (775)
T ss_pred ECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC
Confidence 34456677776654 5888999999874 2111111 1223456677888899988888899999999988644333 33
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCE--EEEEecCCeEEEEEccCCCceE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV--LYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~--l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
.......+++.++.+-+|+.|+.+..||.+.+.+...+...+.+.++..+.++..+ ++.|..|+.+++||.++ +..
T Consensus 106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~--~~t 183 (775)
T KOG0319|consen 106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND--KRT 183 (775)
T ss_pred CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc--Cch
Confidence 34444566777788888999999999999999999999887888888877664443 67888999999999986 332
Q ss_pred -EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccc---cCCCeEEEEeeCCeEE
Q 003331 637 -LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSF---ALPSQVLICSRNGSIY 711 (829)
Q Consensus 637 -~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~---~~~~~i~~~t~~g~l~ 711 (829)
+-....+.....+..+..++..++.++.|..+++|| .+-+..-..+....+-+...... ..+..++..+.+|.+.
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 222223333345667777788888888899999999 55554444443333322221111 1124577777889999
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE 791 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 791 (829)
.||.++++.+.+...+.. +-.+. .......+.+++.+.+-.+.++|.++.. +...+-
T Consensus 264 ~~d~es~~~~~~~~~~~~----~e~~~------~~~~~~~~~~l~vtaeQnl~l~d~~~l~-------------i~k~iv 320 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDS----EEIDH------LLAIESMSQLLLVTAEQNLFLYDEDELT-------------IVKQIV 320 (775)
T ss_pred EEecccchhhhhhccCCc----hhhhc------ceeccccCceEEEEccceEEEEEccccE-------------Eehhhc
Confidence 999999998776554431 10111 1112234556666677889999877542 221111
Q ss_pred -cCCcccccceE---ECCEEEEeeeCCeEEEEeccc
Q 003331 792 -LQGDIFSSPVM---IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 792 -~~~~~~~s~~~---~~~~l~vg~~~g~l~~~d~~t 823 (829)
.++++ ...-. .++.+.++|..+.+..|+..+
T Consensus 321 G~ndEI-~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 321 GYNDEI-LDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred CCchhh-eeeeecCCccceEEEEeCCCceEEEecCC
Confidence 11222 11112 347899999888888887654
No 199
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.21 E-value=5.8e-08 Score=98.48 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=171.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEE---EcC-CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-C
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEI---KLE-GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-G 558 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~---~~~-~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~ 558 (829)
..+.++.+....+.++.|++.+|.+.-+. ... .....+.++..+ +.++.|..+|.|+.|+..+.++......+ +
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g 288 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTNRISKQVHAHDG 288 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCceEEeEeeecCC
Confidence 34555666666677999999887665432 222 234456677665 46889999999999998777665544444 3
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
.+.+-.+. .+|.|+.|..|..|..|| .+-+.+...+.+...-..-.+.+..+-+|+||..+.|.-=++++ +..+-
T Consensus 289 gv~~L~~l--r~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~--~f~~~ 363 (626)
T KOG2106|consen 289 GVFSLCML--RDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN--GFTLT 363 (626)
T ss_pred ceEEEEEe--cCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC--CceEE
Confidence 44433333 457888899999999999 44444444444332222223444445599999877766545554 32222
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
... +.......+..++.+.+..++.++.+..|+ +.++.|......+..... +...|.+.+|+..|..+.+|.++-
T Consensus 364 v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~---fhpsg~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 364 VQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECAD---FHPSGVVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEe-cccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEee---ccCcceEEEeeccceEEEEecccc
Confidence 111 111223344455667778888899999998 668899988776665554 333458999999999999999986
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++-......++... ...+++.++++|+.|+.||+|..+.+
T Consensus 439 ~lv~~~~d~~~ls~v------------~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVV------------RYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eeEEEEecCCceEEE------------EEcCCCCEEEEecCCCeEEEEEECCC
Confidence 655433333333322 23345999999999999999987644
No 200
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=9e-10 Score=108.44 Aligned_cols=270 Identities=13% Similarity=0.050 Sum_probs=172.7
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcC-CCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYL-TGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~-tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..++++|+++..++.|.+...|+.. +++ ++.+...+....+-..+++++.++++.+.+..+..||..+|.....+..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 4566777788888888776666532 333 2334444444555567788888998888888899999999999887766
Q ss_pred C-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CC
Q 003331 599 G-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT--LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS 674 (829)
Q Consensus 599 ~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~ 674 (829)
+ +...++.+..+++-.+++|+.++.++.||.+ |.. .|+... .+.....++..++..++..+.+..+..++ .+
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD---gn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD---GNILGNWEGVR-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCC---cchhhcccccc-cceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 5 4455666777777889999999999999988 444 354322 24456778888999999999999999998 44
Q ss_pred CCEEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccccc--CCC
Q 003331 675 GSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCL--SID 751 (829)
Q Consensus 675 g~~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 751 (829)
-...-..+...++.+.. ...++. +.+.-.+..+..||.+..+++.+|.....-. +..++|. .++
T Consensus 386 ~~dr~lise~~~its~~---iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~----------fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFS---ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH----------FIIRSCFGGGND 452 (519)
T ss_pred hhhhccccccCceeEEE---EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc----------eEEEeccCCCCc
Confidence 33222233344443332 223444 4444457788999988766665554222110 1112221 125
Q ss_pred cEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc----ccccceEECCEEEEeeeCCeEEEEecc
Q 003331 752 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD----IFSSPVMIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~l~vg~~~g~l~~~d~~ 822 (829)
.++..|+.|+.||+|+..+| +.+....-+.. +...|. ....+-.++.||.+..|.+.
T Consensus 453 ~fiaSGSED~kvyIWhr~sg-------------kll~~LsGHs~~vNcVswNP~-~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG-------------KLLAVLSGHSKTVNCVSWNPA-DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCC-------------ceeEeecCCcceeeEEecCCC-CHHHhhccCCCCeEEEecCC
Confidence 78999999999999998876 22222111111 111221 12345557788999998765
No 201
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.20 E-value=1.9e-10 Score=105.69 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=172.9
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
++|-.++.+|.|+.=..-+-+||.=+-+|..+....-+..+..+.-....++.|=.-..||+-||..+..+.. ..+.-+
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~ 105 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKA 105 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeee
Confidence 4544566667666655555566665555555433322223322111222233444556788889988877653 345556
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
..++.+.++++.|+.+..+.+||.+.... +.-.+......+-....+..++.++..+.+++|..|| .+|+.+-.....
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC
Confidence 66777778899998888888888775211 1112222222223444555677888888999999999 999999888877
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
.++.+.- ...+|.++..++.+.|..||+++-.++-.++.+-++.+..... ..+.+++|..|+.+|
T Consensus 185 s~VtSlE---vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P------------~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 185 SPVTSLE---VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP------------KKEFFVAGGEDFKVY 249 (334)
T ss_pred CCCccee---eccCCCEEEEecCceeEEeccccccceeeccCccccccccccC------------CCceEEecCcceEEE
Confidence 7766554 2347788888888999999999988887888777765543333 367888899999999
Q ss_pred EEEeecCccccccccccccceeeeee--ccCCcccccceEECCEEEE-eeeCCeEEEEeccccc
Q 003331 765 ILRVNLDVTGKENQSKDHMVQEFAKL--ELQGDIFSSPVMIGGRVFV-GCRDDYIYCIALETQH 825 (829)
Q Consensus 765 ~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~l~v-g~~~g~l~~~d~~tg~ 825 (829)
.||.++| +.+..+ ...|.+..--..=+|.+|. |+.||.|..|....++
T Consensus 250 kfDy~Tg-------------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTG-------------EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCC-------------ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999987 333332 1223322111011566665 7889999999765544
No 202
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.3e-08 Score=106.87 Aligned_cols=276 Identities=14% Similarity=0.120 Sum_probs=191.0
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE-ecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF-QTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~-~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
..+.+++.+.+.+.++-.+|.|-.|++..+=..-.. ..+. ......++. +++.++..+.+|.|..||+.+++.+..+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence 346777777788999999999999998875333222 2221 223334444 5788999889999999999999999999
Q ss_pred ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
+..+..+-++++.+....+.+|..+|.++.++..+ ++......+.. ....+.....++..++.|+.||.|.+|| .
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 88776666677777788899999999888888776 77666554432 2234555666677799999999999999 8
Q ss_pred CCCEEEEeec--CC-----c--eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccc
Q 003331 674 SGSIIWRCRT--GG-----P--IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744 (829)
Q Consensus 674 ~g~~~w~~~~--~~-----~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 744 (829)
.|..+..... .+ + +++. ....++.|..|...|.|..||..+|.++-.+.....-..+..+.+
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv---~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~------ 255 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSV---LFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD------ 255 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEE---EEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC------
Confidence 8877663221 11 1 1222 234678899999999999999999988755544333222222222
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEe
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d 820 (829)
+++.+++++.|+.+..|...++...|. ......+++..+.+..+.+..++.|.+|..|+.-.
T Consensus 256 -----~~d~vfsaGvd~~ii~~~~~~~~~~wv---------~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 256 -----NEDRVFSAGVDPKIIQYSLTTNKSEWV---------INSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred -----CCCeEEEccCCCceEEEEecCCcccee---------eeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 278999999999999998775533210 11122345555666667778899999988877643
No 203
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=108.76 Aligned_cols=274 Identities=15% Similarity=0.101 Sum_probs=160.2
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC-eEEEEEcCCCeEEE-eeccCCcccccceeecCCCEE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH-NLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g-~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l 615 (829)
..+.+||++||...|+|...........-.-...++..+.... .|..|........- +.-+.+.+ .....++.+..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v-~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV-HALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccce-eeeecCCCceEE
Confidence 4589999999999999976533222111111224455554332 34444433221111 12222322 223334434556
Q ss_pred EEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-------CC--CEEEEeecCC
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-------SG--SIIWRCRTGG 685 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g--~~~w~~~~~~ 685 (829)
+.|+..|.||+|.+.+ |..+-....+-.......++.++..++.|+.||.|.+|. . ++ +.+..+....
T Consensus 97 ~ag~i~g~lYlWelss--G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSS--GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EeecccCcEEEEEecc--ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 6666899999999998 987765544444445667777888999999999998875 1 11 2222222211
Q ss_pred -ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEE
Q 003331 686 -PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
++...-+-....+.++|..+.|..+.+||...|.++-+...+..+.+..... .+..+|+|+.+|.|+
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp------------ae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP------------AERVVYIGTEEGKIF 242 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc------------cccEEEecCCcceEE
Confidence 1111111112245689999999999999999999988877776654433222 288999999999999
Q ss_pred EEEeecCc--cccccc--cccccceeeeeeccCC-cccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 765 ILRVNLDV--TGKENQ--SKDHMVQEFAKLELQG-DIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 765 ~~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
..+...-. ....+. ....+++........+ ..++...+ ++..|..|+.||.+-.||..+...
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 88765321 110000 0011111111111112 23444444 456778899999999999987664
No 204
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.7e-09 Score=109.59 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=166.8
Q ss_pred ccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003331 472 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 472 ~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
|+++--|+ .-.+..+-.+|.|..||-+|....-.+...+-..-++.+....+-+++|+.|..|..|+..|++.+
T Consensus 17 KsVd~HPt------ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 17 KSVDFHPT------EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred eeeecCCC------CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 55665554 445666777899999999988887777766544445556666678999999999999999999999
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEc
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~ 629 (829)
..|+.+....-+..+.+..-.++++|+|-.|.+||-+.+ .+...+..+....-..++.+ +.++...++.|+++-+|.+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 999998877777778888888999999999999996654 33444555555555555554 3456777888999988887
Q ss_pred cCCCceEEEeeccCCcceeeeeeeec--CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCCCeEEEEe
Q 003331 630 KALPFHTLWLHELEVPAFASLCITSA--NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICS 705 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t 705 (829)
.. -.+..+.+.+............ .-++..|+.|-.+.+|| ++...+-+......-.+.. +.+.. -.|..|+
T Consensus 171 gs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l--piiisgs 246 (794)
T KOG0276|consen 171 GS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL--PIIISGS 246 (794)
T ss_pred CC--CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC--cEEEEec
Confidence 65 3344445444444444444432 23788888888999999 8776664443222111111 11121 2578899
Q ss_pred eCCeEEEEeCCCCcEEE
Q 003331 706 RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w 722 (829)
.||++..|+..|-++.-
T Consensus 247 EDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEK 263 (794)
T ss_pred CCccEEEecCcceehhh
Confidence 99999999988865543
No 205
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.9e-09 Score=104.78 Aligned_cols=269 Identities=11% Similarity=0.074 Sum_probs=168.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC-cEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~ 563 (829)
..-.++.+|.++.|++||..||++....+.+........+...|..++..+.|=.+..||..+- +.+.....+....++
T Consensus 119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSS 198 (406)
T ss_pred CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceee
Confidence 3455777889999999999999986555555444556677777777777776666777776542 222222334455666
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE-EEEecCCeEEEEEccCCCce-------
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL-YVASTSGRLTAISVKALPFH------- 635 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l-~v~t~~g~l~~~~~~~~~g~------- 635 (829)
+.+-+.++.|...+.|..+.+|+..+|-++.++..+....-...+.. +++| ..++.+..|..|-..+...+
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE 277 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHE 277 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccc
Confidence 77777778999999999999999999999998877665444444443 3444 44555677888887762111
Q ss_pred -----EEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCC
Q 003331 636 -----TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 636 -----~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
..|......+......... .+..+..++.|+.|..|| ++|..+.+.....+-.....+. ..+..|+.+..|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDK 356 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCC
Confidence 1122111111100000000 123677888999999999 9999998876544322221111 1244677888899
Q ss_pred eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 709 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.|.+||.++++-.-..+.+..+..+.-+.. ...++..|+-+-.+.+|
T Consensus 357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-----------~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-----------TAPYVVTGSVDQTVKVW 403 (406)
T ss_pred cEEEEEeccceeeeccCCCcceeEEEecCC-----------CCceEEeccccceeeee
Confidence 999999999887655554444333322221 13366666666666555
No 206
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.1e-09 Score=111.72 Aligned_cols=269 Identities=10% Similarity=0.057 Sum_probs=183.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...-.|.++-|+|.|..||-.-|.++-+|.-+++.+-...+.+.+..++.|+.|-.|..|+-++.+++.+...+-...-+
T Consensus 19 P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE
Confidence 34556777889999999999999999888888777667888888888889999999999999999998877666555555
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+...--.|+.+|+|.+|+.|+-.+++++-....+....-...+.+..+.|+.++.|-+|.+||+.. -..-.....
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG---LRkk~~~pg 175 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG---LRKKNKAPG 175 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc---hhccCCCCC
Confidence 56665556688899999999999999999988877766554445566568899999999999999763 221111111
Q ss_pred ------------Cccee------------------eeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC----ceee
Q 003331 644 ------------VPAFA------------------SLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG----PIFA 689 (829)
Q Consensus 644 ------------~~~~~------------------s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~----~~~~ 689 (829)
...+. -.++.+.--.++.|+.|..|.+|.-+-...|...+-. ++.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 01111 1111122234555666667777764445567766432 2222
Q ss_pred cCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 690 GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 690 ~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
. +.....+.|...+.|+.|..||....+-+-.+...+.-+....... ...++.+..|+++.+|..+
T Consensus 256 v--lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP------------~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 256 V--LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP------------ELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred E--EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC------------CcceeeeecCCceEEEEEc
Confidence 1 1122245677888999999999887777766665555444333332 3445566667777777655
No 207
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.17 E-value=3e-09 Score=106.52 Aligned_cols=232 Identities=12% Similarity=0.089 Sum_probs=158.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcE---EEEEE---------------cCCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSV---LWEIK---------------LEGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~---~w~~~---------------~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
..+++.++|.++.++.|..|+..+|+. +|..+ .+..-..+.+++.|+.++..|..|..|..|
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 345688999999999999999999983 34331 111223467888999999999999999999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEEEecCC
Q 003331 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g 622 (829)
|..|++.+..+..+.....+.++......+|.++.|..+..|+.+.-..+-++..+.. +.+.-+++. ...+-+|..|.
T Consensus 230 ~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDr 308 (479)
T KOG0299|consen 230 DCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDR 308 (479)
T ss_pred cCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc-cceEEeccccc
Confidence 9999999887776666666677777778899999999999999876444333322322 222222322 34566777899
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-------c--
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-------C-- 692 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-------~-- 692 (829)
++..|++... -+.+ +..+...+...++ .++..++.|+.+|.|+.|+ ...++++......++...+ .
T Consensus 309 T~rlwKi~ee-sqli--frg~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit 384 (479)
T KOG0299|consen 309 TVRLWKIPEE-SQLI--FRGGEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT 384 (479)
T ss_pred eeEEEecccc-ceee--eeCCCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee
Confidence 9999987541 2222 2222223333444 3677889999999999999 8888888776543332221 0
Q ss_pred -cc-ccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 693 -TS-FALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 693 -~~-~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+. ....+.+..|+.+|.|..|-..+|
T Consensus 385 sla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 385 SLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeEecccCceEEecCCCCceEEEEecCC
Confidence 11 112345667788899999988877
No 208
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=1.3e-08 Score=97.17 Aligned_cols=265 Identities=13% Similarity=0.133 Sum_probs=168.2
Q ss_pred EEEEecCCCcEEEEECCC------CcE------EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003331 488 YLFVGSHSHKFICADAKR------SSV------LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~t------g~~------~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
.+++|+..+.|+.|++.- ..+ +|.+..+.... .+++.++-++..|+.|.+|..||..+.+.+-..-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~si--tavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSI--TALAVSGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccce--eEEEecceeEeccCCCCcEEEEeccchhhhccee
Confidence 478899888888887532 122 44444444433 3444566789999999999999988766655444
Q ss_pred cCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 556 TCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 556 ~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+.....+..+... ...++.|+.||.+.+|+...-.++-.+..+..-.....+.+.+...+..+.|+.+..||+-+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-- 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-- 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc--
Confidence 44333333344432 23688999999999999888777666666555566677777666666667789999999988
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
|+.-....+.... ......+.+.+.+++.. ..|-+|- .+-++.-+...+..+...+ ....+.+.+|..++.+..
T Consensus 159 Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~~---~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 159 GRVAFVLNLKNKA-TLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPKRILCAT---FLDGSELLVGGDNEWISL 233 (362)
T ss_pred CccceeeccCCcc-eeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccccceeee---ecCCceEEEecCCceEEE
Confidence 6654444443222 22445555666666544 3444444 3333322222222233333 445778999999999999
Q ss_pred EeCCCCcEEEEEecCCccc-cccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 713 FEQESGNLLWEYSVGDPIT-ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+|.+++.....+..+..-. ....+.+ ....++..++.||.|.+||.+..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~----------~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTN----------PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEec----------CCceEEEEeccCceEEEEEcccc
Confidence 9988888776665444322 2221221 11468888999999999998743
No 209
>PTZ00421 coronin; Provisional
Probab=99.16 E-value=3.7e-08 Score=107.62 Aligned_cols=208 Identities=13% Similarity=0.021 Sum_probs=134.3
Q ss_pred CCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCc-------EEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEE
Q 003331 515 EGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGD-------IYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 515 ~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~ 585 (829)
+...+....+++ ++..+++++.|+.|..||..++. .+..+..+........+.+. .+.+++++.|+.|..|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 334445666776 66789999999999999987653 23344444433344455554 3678889999999999
Q ss_pred EcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc-eeeeeeeecCCEEEEEe-
Q 003331 586 DFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVICCL- 663 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~~~- 663 (829)
|..+++.+..+..+...+.+..+..++..++.++.|+.|..||+.+ ++.+.....+... ........+++.++.+.
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 9999988877765555555666676678889999999999999987 7776665443322 12223334455555433
Q ss_pred ---eCCeEEEEc-CCCC-EEEEeecCC-ceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEe
Q 003331 664 ---VDGHVVALD-SSGS-IIWRCRTGG-PIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 664 ---~~g~i~~~d-~~g~-~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~ 725 (829)
.++.|..|| .+.. ......... .....+.. ....+.+++++ .||.|++||..++++.....
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 367899999 5543 322222111 11111111 11234677776 49999999999998765443
No 210
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=2.7e-09 Score=107.78 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=165.1
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC-CEE
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR-QLI 573 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-~~i 573 (829)
+-++..|+..+-..+-.+.--....+++.+-.||..+.+|...|.+..||.++-.++..+..+....-..-+.+.+ ..+
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence 3468888887765543322223345678888888888899889999999966644444444333322222333334 445
Q ss_pred EEeccCCeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeee
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
..|++|+.+..||+.++........+.. +.+..+.+.++..++.|+.||.|..||....+ ..+-.++.+.|+ .+...
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pV-e~vl~ 204 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPV-ESVLA 204 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCce-eeEEE
Confidence 5677778888899988876434433333 33333334445678889999999999988743 445555555444 45555
Q ss_pred eecCCEEEEEeeCCeEEEEc-CCCC-EEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003331 653 TSANRHVICCLVDGHVVALD-SSGS-IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 653 ~~~~~~l~~~~~~g~i~~~d-~~g~-~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
.+.+..+..++ ...+.+|| .+|. .+...........+.+... .+..++.++-|+++.+||..+-+++.....++++
T Consensus 205 lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv 282 (487)
T KOG0310|consen 205 LPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV 282 (487)
T ss_pred cCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeecccce
Confidence 55555555554 56799999 6454 3332221112222222222 2467999999999999998888888888888887
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
-+....++ +..+++|-.||.+.+-+..
T Consensus 283 Lsiavs~d------------d~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPD------------DQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCC------------CceEEEecccceeeeehhh
Confidence 66554443 7899999999987766433
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.15 E-value=7.4e-08 Score=101.60 Aligned_cols=313 Identities=13% Similarity=0.122 Sum_probs=176.4
Q ss_pred eEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 487 IYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 487 ~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
+.+++ -..+|.|..+|..|.+++.+++.+........++.|+.++|+.+.||.|..+|+.+++++.++..+..... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~-i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG-IA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce-EE
Confidence 33443 44578999999999999999887766555677888999999999999999999999999999988776554 34
Q ss_pred eecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCccc-------ccceeecCCCEEEEE-ecCCeEEEEEccCCCceE
Q 003331 566 VDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIF-------GSPAIDEVHDVLYVA-STSGRLTAISVKALPFHT 636 (829)
Q Consensus 566 ~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~-------~~~~~~~~~~~l~v~-t~~g~l~~~~~~~~~g~~ 636 (829)
++.++.+++++.+ .+.+..+|.+|.+++..+...+... +...........++. -..+.+..+|..+ .+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d--~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD--PKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT--SSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc--ccc
Confidence 5567788888764 6889999999999988776543211 112222222222222 2346677777554 222
Q ss_pred EE--eeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCceeecCc--ccccCCCeEEEEeeCCe-
Q 003331 637 LW--LHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPIFAGPC--TSFALPSQVLICSRNGS- 709 (829)
Q Consensus 637 ~w--~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~t~~g~- 709 (829)
+. ..+.. .......+.+++.+++++. ....+.++| .++++++....+......+. ...-..|.+|..++.+.
T Consensus 163 ~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 163 LKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred cceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 22 22221 1223445566666776654 456888999 88888887765443322221 11222345665554332
Q ss_pred ---------EEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE----ccCCcEEEEEeecCccccc
Q 003331 710 ---------IYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC----TSSGSIHILRVNLDVTGKE 776 (829)
Q Consensus 710 ---------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~G~l~~~d~~~~~~~~~ 776 (829)
+..+|..+-+.+-+.+..+.-.... ..+++.++|+. ...+.|.++|.++-
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~------------thP~s~~vwvd~~~~~~~~~v~viD~~tl----- 304 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK------------THPDSRYVWVDTFLNPDADTVQVIDKKTL----- 304 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--------------TT-SEEEEE-TT-SSHT-EEEEECCGT-----
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceee------------cCCCCccEEeeccCCCCCceEEEEECcCc-----
Confidence 2223434445555555433221111 12347899998 44578999998854
Q ss_pred cccccccceeeeeecc-CCcccccceE--ECCEEEEeeeCC--eEEEEecccccccc
Q 003331 777 NQSKDHMVQEFAKLEL-QGDIFSSPVM--IGGRVFVGCRDD--YIYCIALETQHLEE 828 (829)
Q Consensus 777 ~~~~~~~~~~~~~~~~-~~~~~~s~~~--~~~~l~vg~~~g--~l~~~d~~tg~~~~ 828 (829)
+....... ++.....+-+ ++..+|+..+++ .|..||.+|.++..
T Consensus 305 --------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 --------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred --------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 22222211 1101112222 467999998765 59999999987643
No 212
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.15 E-value=1.6e-08 Score=95.89 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=156.0
Q ss_pred CceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 516 GRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 516 ~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
...+...-+.++|..+..|++|..|+.|+. .+.+-.|..+.+.....-.-+..++..|+..+.|.+++.||.++|+...
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 344456778888889999999999999993 3445567776655444444455577889999999999999999999999
Q ss_pred eeccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 595 KLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
++..+....++....+-+ ..|-.++.|+++..||..+ ...+..++...+ ..+..+......+..|.-|+.|.+||
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyq-ltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQ-LTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecc--cchhhcccccee-EEEEEecccccceeeccccCceeeecc
Confidence 998877665554433212 2344567899999999886 333333322212 24556666778899999999999999
Q ss_pred CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEecCCcccccccccccccccccccc
Q 003331 673 SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSVGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 673 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
..+...+..+..........+.. .+..+..-+-|.++..||.+--.. +-.+....-.. ...+---+..
T Consensus 204 r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf-------eknlL~csws 275 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF-------EKNLLKCSWS 275 (338)
T ss_pred ccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhh-------hhhcceeecc
Confidence 77777766654332222211111 123455556788899998653211 11111100000 0001112234
Q ss_pred CCCcEEEEEccCCcEEEEEeec
Q 003331 749 SIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+.+..+-+|+.|..+|+||..+
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCCccccccccceEEEeeccc
Confidence 5578889999999999999874
No 213
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.7e-08 Score=96.22 Aligned_cols=241 Identities=10% Similarity=0.073 Sum_probs=147.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.++.-+++..+.+.++++||.|..||...-..+-.+.....+.... +. +...+++|+.||.|..+|..+++....-..
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~-F~-d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCA-FA-DESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeee-cc-CCceEEEeccCceEEEEEecCCcceeeccC
Confidence 4566677777889999999999999988777777777766666553 33 247899999999999999998875543332
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
......+......+.++.|++|+.|-.||+.. -...-.++.... ..++...++++++|+.+..+..|| .+-..
T Consensus 94 -~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kk---Vy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 94 -DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQGKK---VYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -CCceEEEEeeccCCeEEEcccCccEEEEeccc--cccccccccCce---EEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 22333333444468899999999999999874 112222222222 234555688999999999999999 65544
Q ss_pred EEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCC----cEEEEEecCCccccccccccccccccc--cccCC
Q 003331 678 IWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG----NLLWEYSVGDPITASAYIDEHLQLKLE--SCLSI 750 (829)
Q Consensus 678 ~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 750 (829)
-.+.....--+-..++... ..+...+++-+|.+..=..++- +..+.++.+-.... +..+.+... ...+.
T Consensus 168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~----~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK----DTEIIYPVNAIAFHPI 243 (323)
T ss_pred hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC----CceEEEEeceeEeccc
Confidence 3332222211111122111 2334566777887765444443 22333332211100 000000001 11222
Q ss_pred CcEEEEEccCCcEEEEEeecC
Q 003331 751 DRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~ 771 (829)
-+.++.|..||-|.+||..+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cceEEecCCCceEEEccCcch
Confidence 578999999999999998865
No 214
>PTZ00420 coronin; Provisional
Probab=99.14 E-value=3.9e-08 Score=107.97 Aligned_cols=224 Identities=8% Similarity=-0.004 Sum_probs=141.8
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcE--------EEEEecCCeeeee
Q 003331 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDI--------YWTFQTCGEVKCQ 563 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~--------~w~~~~~~~~~~~ 563 (829)
+..+.+..|+..+...+..+..+...+.+..+.++ +..+++|+.|+.|..||..++.. +..+..+......
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 34556777776666666666666555556777765 57899999999999999876532 2223333333344
Q ss_pred eeeecCCCEE-EEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 564 PVVDAPRQLI-WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 564 ~~~~~~~~~i-~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+.+.+..+ .+++.|+.|..||..+++.+..+... ....+..++.++..+.+++.++.+..||+.+ ++.+..+..
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i~tl~g 207 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIASSFHI 207 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEEEEEec
Confidence 4555555444 57889999999999999888776543 3344556666667777777899999999998 777665544
Q ss_pred CCcceeeee-----eeecCCEEEEEeeCC----eEEEEc-C-CCCEEEEeecCCceee-cCcccccCCCeEE-EEeeCCe
Q 003331 643 EVPAFASLC-----ITSANRHVICCLVDG----HVVALD-S-SGSIIWRCRTGGPIFA-GPCTSFALPSQVL-ICSRNGS 709 (829)
Q Consensus 643 ~~~~~~s~~-----~~~~~~~l~~~~~~g----~i~~~d-~-~g~~~w~~~~~~~~~~-~~~~~~~~~~~i~-~~t~~g~ 709 (829)
+.....+.. +..+++.++.++.++ .|..|| . .++.+........... .|.. ...++.+| +|..|+.
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDGN 286 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee-eCCCCCEEEEEECCCe
Confidence 332211211 224566777766553 699999 5 3555544333221111 1111 11234444 6678999
Q ss_pred EEEEeCCCCcE
Q 003331 710 IYSFEQESGNL 720 (829)
Q Consensus 710 l~~~d~~tG~~ 720 (829)
|++|+..++.+
T Consensus 287 Ir~~e~~~~~~ 297 (568)
T PTZ00420 287 CRYYQHSLGSI 297 (568)
T ss_pred EEEEEccCCcE
Confidence 99999988764
No 215
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.12 E-value=6.1e-09 Score=109.52 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=171.9
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEE--EecCCe-eeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQTCGE-VKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~--~~~~~~-~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
..++..+..++.|+++..|+.+.++-+-+ +..+.. +..+.++. .+++.+.+|+.|..+..|...+..++..+..+.
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~ 101 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK 101 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence 34445678888899999999655443322 222222 22323333 356789999999999999999989888877666
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWR 680 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~ 680 (829)
...++..+.. +++++.|++|.++.+|.... .....+.+.....+....+ .+.+..|+.|..|..|.. |+.+-.
T Consensus 102 snVC~ls~~~-~~~~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~~~vTgsaDKtIklWk~-~~~l~t 174 (745)
T KOG0301|consen 102 SNVCSLSIGE-DGTLISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-ENTYVTGSADKTIKLWKG-GTLLKT 174 (745)
T ss_pred cceeeeecCC-cCceEecccccceEEecchh----hhcccCCcchheeeeeecC-CCcEEeccCcceeeeccC-Cchhhh
Confidence 6555554433 56689999999888886442 2222222322223333333 447888888988888863 444444
Q ss_pred eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 681 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
+.......... ....+..+..+++||.|..|+. +|..+.++..+.....+... ..+++.+..++.|
T Consensus 175 f~gHtD~VRgL--~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~-----------~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 175 FSGHTDCVRGL--AVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM-----------ALSDGLIVSTGED 240 (745)
T ss_pred hccchhheeee--EEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe-----------cCCCCeEEEecCC
Confidence 43322222221 1333557888899999999997 67777666554443322221 1237889999999
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCC-cccccceEECCEEEEeeeCCeEEEEeccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~l~~~d~~t 823 (829)
+++.+|+.. .......+|+ .+++.-+..+|.|++||.||.+|.|....
T Consensus 241 rtlriW~~~---------------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 241 RTLRIWKKD---------------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ceEEEeecC---------------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 999999765 3445567777 56666667799999999999999997653
No 216
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.12 E-value=5e-08 Score=91.10 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=155.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++.||..+.|.....|-..+|+.+-++..+.+.+.++.+..+...++.|+.|.++..||.++|+++.+.+++..++..-
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~ 100 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD 100 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence 56678888888888888877899988888888777777887777899999999999999999999998888887776543
Q ss_pred eeecCCCEEEEecc-----CCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 565 VVDAPRQLIWCGSH-----DHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 565 ~~~~~~~~i~~gs~-----~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
++.+++.+.+.+. .+.|..+|.. ..++..++.+......+......+..|+.|..+|.|..||+.+
T Consensus 101 -F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~- 178 (327)
T KOG0643|consen 101 -FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART- 178 (327)
T ss_pred -eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc-
Confidence 4445555555543 3567888876 4455677766665555666666678999999999999999998
Q ss_pred CceEEEee-ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC
Q 003331 633 PFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 633 ~g~~~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
|..+-.. +.+...+....++.+..+...++.|..-..+| .+-+++-++.+..|+-+..
T Consensus 179 -g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 179 -GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred -CceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 7554332 33444456677777888888899999999999 8888888888777765443
No 217
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=4.4e-07 Score=93.33 Aligned_cols=267 Identities=11% Similarity=0.065 Sum_probs=164.7
Q ss_pred CeEEEEecCC-----CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcE
Q 003331 486 DIYLFVGSHS-----HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDI 550 (829)
Q Consensus 486 ~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~ 550 (829)
..++|+-... ++++.+|..+++.+-.+..+.+.. ..+++|++.+|+++. +..|-.||.+|+++
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4456665543 789999999999998888776543 358899999999876 57899999999999
Q ss_pred EEEEecCCee-------eeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC
Q 003331 551 YWTFQTCGEV-------KCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 551 ~w~~~~~~~~-------~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
+.+...+... .....+++++..+|+... +..+..+|..+++.+-.+..++.....+. . +...++-..|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t-~--e~~~~~~~~D 166 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT-A--NDTFFMHCRD 166 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-c--CCccEEEeec
Confidence 9988765431 123445667888998753 57899999999999988876543222111 1 1222233345
Q ss_pred CeEEEEEccCCCceEEEe-ecc----CCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCC-c---
Q 003331 622 GRLTAISVKALPFHTLWL-HEL----EVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSI----IWRCRTGG-P--- 686 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~-~~~----~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~-~--- 686 (829)
|....+..++ +|+..-. ... ..+.+..+.+.. ++..+|+... |.|+.+| ..... .|...... .
T Consensus 167 g~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecC-CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 5554443332 1332211 111 122333343445 5556666554 9999999 33222 24321111 0
Q ss_pred ---eeecCcccccCCCeEEEEeeC----------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003331 687 ---IFAGPCTSFALPSQVLICSRN----------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 687 ---~~~~~~~~~~~~~~i~~~t~~----------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
.-..+.-....++.+|+..+. +.|..+|.++++.+-+...+.......+.. ++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~------------Dgkp 312 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQ------------DAKP 312 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECC------------CCCe
Confidence 000011112235789985432 479999999999998888766544333222 256
Q ss_pred EEEEEc-cCCcEEEEEeecC
Q 003331 753 LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~~~ 771 (829)
++|+.+ .++.|.++|..++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 778777 4677999998866
No 218
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.09 E-value=5.9e-08 Score=95.08 Aligned_cols=265 Identities=12% Similarity=0.072 Sum_probs=165.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEE-eeC--CcEEEEEEeCCEEEEEEcCCCcEEEE----EecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAV-LAD--FSQVVVGCYKGKIYFLDYLTGDIYWT----FQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~-~~~--~~~v~vg~~dg~l~~~d~~tG~~~w~----~~~~ 557 (829)
..+.|+.|+.||.+..||.+ |+.+-....+.....++.. ..+ ...+++++.|..|..|-.+.|+.+-. ...+
T Consensus 114 ~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 35789999999999999975 8888776665543333332 222 23588889999888877666654321 1123
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----Ce--------------------EEEeeccCCcccccceeecCC
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YR--------------------CVYKLPCGGSIFGSPAIDEVH 612 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~--------------------~~w~~~~~~~~~~~~~~~~~~ 612 (829)
.....+..+..++.++..|++|..|-.|+.++ .+ ++-....+....++....+ .
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C
Confidence 33334444455677888899999999999221 00 0111111122334444444 6
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C--CCCEEE-EeecCCcee
Q 003331 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--SGSIIW-RCRTGGPIF 688 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~--~g~~~w-~~~~~~~~~ 688 (829)
..+|.+++|.+|..||+.+ |..+-....+.. +.+....+....+.+|+.+..+..+| + +|+..- ++....+ +
T Consensus 272 ~v~yS~SwDHTIk~WDlet--g~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-w 347 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLET--GGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-W 347 (423)
T ss_pred CceEeecccceEEEEEeec--ccceeeeecCcc-eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-h
Confidence 8899999999999999998 776666554433 45666666778899999999999999 4 344432 2222222 1
Q ss_pred ecCcc-cccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 689 AGPCT-SFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 689 ~~~~~-~~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.+.+. .......+..+++||.+..||.++-+ .++.+..++.-....--. .+..|..|+.|.+|+++
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~------------~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN------------EGGLIVSGGADNKLRIF 415 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc------------CCceEEeccCcceEEEe
Confidence 11111 11223457778999999999988776 666554433221111111 15578888888888877
Q ss_pred E
Q 003331 767 R 767 (829)
Q Consensus 767 d 767 (829)
.
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 219
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=8.6e-09 Score=103.59 Aligned_cols=275 Identities=12% Similarity=0.060 Sum_probs=158.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-EEEEEEcCCCcEEE-EEecCCeeeeeeeeecCCCEE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYLTGDIYW-TFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~~~~~~i 573 (829)
..+.+||+.||...|+++.........+-.-.+.++.++.... .|..|........- .+..++.+.+- ...+.+..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al-~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL-ASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeee-ecCCCceEE
Confidence 4588999999999999876532211111111224555554332 35555533222221 22234444332 223344455
Q ss_pred EEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC-------CceEEEeeccCCcc
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL-------PFHTLWLHELEVPA 646 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~-------~g~~~w~~~~~~~~ 646 (829)
+.|+..|.||+|...+|+++..+..+-..+....+.+++..++.|+.||.|.+|.+.+. +-+++..+..+.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 55658999999999999998777666556666777887889999999999999974320 01112222111111
Q ss_pred eeeeeeee--cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 647 FASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 647 ~~s~~~~~--~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
.....+.. .+.++|..+.|..+.+|| ..|.++-.+..+..+.+... .-.+..+|+|+.+|.|+..+..+-.....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE--cccccEEEecCCcceEEeeehhcCCcccc
Confidence 11222211 256899999999999999 89998877766554433321 11355799999999999887643221000
Q ss_pred ----E-ecCCccccccccccc--cccccccccCCCcEEEEEccCCcEEEEEeecCcc
Q 003331 724 ----Y-SVGDPITASAYIDEH--LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 773 (829)
Q Consensus 724 ----~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~ 773 (829)
. ....+.....+.... ..+.+-+...++..+..|+.||.+.+||..+.+.
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 0 000000000000000 0111111234588999999999999999987653
No 220
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=8.9e-09 Score=104.09 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=150.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~ 562 (829)
++..+.+|...|.|..||.++...+..+..+....-..-+.+.++. +..|+.|+.+..||+.++.+.-....+ +.+.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 3556667778899999997664444444433332223334444455 455666667778888888764344443 34555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
..+....+..+++|++||.|..||..+- ..+..++++.++-+...+.. +.+++......+.+||+.+ .|+.+-...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps--gs~iasAgGn~vkVWDl~~-G~qll~~~~ 235 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS--GSLIASAGGNSVKVWDLTT-GGQLLTSMF 235 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC--CCEEEEcCCCeEEEEEecC-Cceehhhhh
Confidence 5555445568899999999999998876 55555665555444444433 4455555566799999886 144444444
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.....+..+..++.+++.++-|+.+.+|| .+-+.+......+++.+..... .+..+++|-.+|.+..-...
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~--dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP--DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC--CCceEEEecccceeeeehhh
Confidence 3455556777777788999999999999999 7878887777778887765433 45689999999977766433
No 221
>PTZ00421 coronin; Provisional
Probab=99.08 E-value=4.6e-08 Score=106.84 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=133.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCc-------EEEEEEcCCceeeceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSS-------VLWEIKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~-------~~w~~~~~~~~~~~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
++..|+.|+.|+.|..||..++. .+..+..+........+.+++ +.+++++.|+.|..||..+++.+..+..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 35689999999999999987653 233444444444566677654 5788999999999999999998877765
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-cccceeecCCCEEEEEe----cCCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-FGSPAIDEVHDVLYVAS----TSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t----~~g~l~~~~~~~ 631 (829)
+........+.+++..+++++.|+.|+.||+.+++.+..+..+... ........+.+.++.+. .++.+..||+.+
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 5544455566667788999999999999999999988776554322 22233344445555433 368899999875
Q ss_pred CCceEEEeeccCC-cceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEe
Q 003331 632 LPFHTLWLHELEV-PAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRC 681 (829)
Q Consensus 632 ~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~ 681 (829)
. ...+....... .....+.+..+++.+++++. ++.|.+|| .++++....
T Consensus 247 ~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 247 M-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred C-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 1 12222222221 12223345556778888874 89999999 888876544
No 222
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.06 E-value=5.9e-09 Score=105.24 Aligned_cols=265 Identities=10% Similarity=0.114 Sum_probs=178.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC---cEEEEEEc--CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRS---SVLWEIKL--EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg---~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
+.....||.|...+ |..||...- .++-.++. .+...-++-+..|+..+++|.+-.+|-.||+..-...-..++.
T Consensus 428 S~~trhVyTgGkgc-VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 428 SNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred cCCcceeEecCCCe-EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC
Confidence 34567899988755 999997432 11112221 2334446667788899999999889999998765543333322
Q ss_pred C--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 558 G--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 558 ~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
. ..-....+..+.+..+....||+|..||+.+...+..++.+..-.+.+.+..++-.||.|..|+.|.+||+.+ |.
T Consensus 507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre--gr 584 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE--GR 584 (705)
T ss_pred CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh--hh
Confidence 2 1112233455778888888999999999999988888877665566677777788999999999999999998 88
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEE-eeCCeEEEE
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLIC-SRNGSIYSF 713 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~-t~~g~l~~~ 713 (829)
.+.+++....+| +...++.++.+.+|..++.+.++..+|...++..... -+++..+ ..-|.-|+. ..|+.+.+|
T Consensus 585 qlqqhdF~SQIf-SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKF---a~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 585 QLQQHDFSSQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKF---AYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred hhhhhhhhhhhe-ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEe---cccCceeeecCchhhhhhc
Confidence 777776666554 4556678889999999999999886666666654432 3444332 223444544 356778888
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
..--|.-+++.+-.+.+.+.-... ++.+|+.|+-+..--+|
T Consensus 661 rtPyGasiFqskE~SsVlsCDIS~------------ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 661 RTPYGASIFQSKESSSVLSCDISF------------DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCccccceeeccccCcceeeeecc------------CceEEEecCCCcceEEE
Confidence 776777776655544443332222 26677777766543333
No 223
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.5e-08 Score=104.05 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCCcEEEEEEcCCc----------eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee------eeee-
Q 003331 504 KRSSVLWEIKLEGR----------IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC------QPVV- 566 (829)
Q Consensus 504 ~tg~~~w~~~~~~~----------~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~------~~~~- 566 (829)
..-++.|+++.++- .+.++... ++.+|+.+.-+.++++|+.||+++|+++....... +-.+
T Consensus 182 ~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkv--gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVs 259 (773)
T COG4993 182 GNLQVAWTYRTGDVKQPEDPGETTNEVTPLKV--GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVS 259 (773)
T ss_pred hccceeEEEecCcccCCCCcccccccccceEE--CCEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccccee
Confidence 34567788765431 23345554 45899999999999999999999999875321100 0000
Q ss_pred ---------ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 567 ---------DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 567 ---------~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
.+...+||..+.|..|.++|.+||+..|.+..++
T Consensus 260 y~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~G 302 (773)
T COG4993 260 YGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKG 302 (773)
T ss_pred cccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCc
Confidence 1123569999999999999999999999987654
No 224
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.7e-08 Score=103.36 Aligned_cols=236 Identities=9% Similarity=0.072 Sum_probs=165.0
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
+-+.+-.--+.++-++|.+..||-+|-..+..++..+...-+..+....+-+.+|++|..|+.|+..|++.+..+..+..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc
Confidence 33444444567777899999999999999888887665444445555678899999999999999999999999999988
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
.+.++.+.+..-.++.++.|-.|-.||-+.. -.....++.+.......++.+.+ +....++-|++|.+|. -.....+
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 8888888887778888998988999987741 12222334444444556666654 4556677788888887 4444555
Q ss_pred EeecCCceeecCcccccCC---CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE
Q 003331 680 RCRTGGPIFAGPCTSFALP---SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~---~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
+++... -...|+..... -.++.|+.|..+..||-+|...+-++..+....+..++.. .-..++.
T Consensus 178 Tl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-----------~lpiiis 244 (794)
T KOG0276|consen 178 TLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-----------ELPIIIS 244 (794)
T ss_pred eeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-----------CCcEEEE
Confidence 554322 22223322222 2688889999999999988877666654443333333322 2568899
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.||++.+|+..+-
T Consensus 245 gsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTY 259 (794)
T ss_pred ecCCccEEEecCcce
Confidence 999999999987653
No 225
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.05 E-value=2.1e-09 Score=105.86 Aligned_cols=271 Identities=11% Similarity=0.002 Sum_probs=181.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++.+|.+||..|.+..||..+-.+.--...++..+.+...+.++..++.|..+|.|..|++.-..++-....+.+....
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRD 185 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhe
Confidence 45788999999999999986432211112345666677888889899999999999999986544333222223232333
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+++.+..+..+|.||.|..||....+....+..++...-+....+..+.|+.++.|..|-.||+++ |..+-+....
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--g~cl~tlh~H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--GSCLATLHGH 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--cchhhhhhhc
Confidence 44555667788889999999999887776666666666556666666678899999999889999988 8888777666
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
........+..+++.+..++.|..+.+|| ++-+.+..+.....-...........+.+-.|+.||.|+.|....-+++-
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 66666777777889999999999999999 76666655553322111111111224456677889989888865322221
Q ss_pred EEe--cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 723 EYS--VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 723 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
... ....+.+.. ..+.+..++.|+.|..+..|..
T Consensus 344 ~i~~AHd~~iwsl~------------~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLA------------YHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCcccccceeeee------------ccccceeEeecCCCcceeeecc
Confidence 111 111111111 1233788888999998888854
No 226
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=5.8e-09 Score=108.81 Aligned_cols=268 Identities=14% Similarity=0.159 Sum_probs=167.4
Q ss_pred CeEEEEecCCCcEEEEECCCCcE------EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecC
Q 003331 486 DIYLFVGSHSHKFICADAKRSSV------LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTC 557 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~------~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~ 557 (829)
+.++|.|+.||.|..|+...-.- +-++..+.......+...+++.++..+.|-+|..|+...+. ++-++..+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 44699999999999998643221 11122222223344555666788899999999999987764 22233334
Q ss_pred Ce-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeecc------C-Cccc--ccceeecCCCEEEEEecCCeEE
Q 003331 558 GE-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPC------G-GSIF--GSPAIDEVHDVLYVASTSGRLT 625 (829)
Q Consensus 558 ~~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~------~-~~~~--~~~~~~~~~~~l~v~t~~g~l~ 625 (829)
.. +.+..........+..|+.|+.|+.||..+|. .+-++.. . +... .+......+-.++.|+.++.|.
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 33 34433325556677788999999999999883 3333321 1 1111 1112222122445566788899
Q ss_pred EEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEE
Q 003331 626 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLI 703 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~ 703 (829)
.||+.+ ++.+-+...+....-...+..++.++..++.||.|..|| ...+.+.++..... +++..+. ..=..+|.
T Consensus 197 ~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~--~sf~~vYs 272 (735)
T KOG0308|consen 197 LWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS--PSFTHVYS 272 (735)
T ss_pred Eecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC--CCcceEEe
Confidence 999998 777777666655555666777888999999999999999 66666666654432 3332211 11247999
Q ss_pred EeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 704 CSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
|..+|.|++-|..+-. ..--.+-..++...... .+++-+|+++.|+.|..|...
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~------------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH------------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCCCcEEecccCCchhheEeecCCCchhhhhhc------------cccCCceeeeccccceecCCc
Confidence 9999999999988742 22122222222211111 124556999999999998554
No 227
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=9.2e-08 Score=91.53 Aligned_cols=250 Identities=10% Similarity=0.038 Sum_probs=160.5
Q ss_pred cccccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc--EEEEEEe
Q 003331 459 RGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS--QVVVGCY 536 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~--~v~vg~~ 536 (829)
.+.+...|.++-......+.+| ++-++..|+.|.+|..||..+.+.+-..-.+.....+..+..+-. .+..|+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ceeeeccccccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 4567778888866554445555 678899999999999999988776655555554444445544432 7999999
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~ 616 (829)
||.|..|+...=+++.++..+..-.....+.+.+...+.-+.|+.+..||.-+|+.-.......... ...+++.+++.+
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFV 184 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEE
Confidence 9999999987766655555443333344455666666666779999999999998766655543222 234455567777
Q ss_pred EEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccc
Q 003331 617 VASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSF 695 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~ 695 (829)
+...++ |-+|..++ .+..-....+ .........+++.+++|..++.+..+| .++.....+....+-........
T Consensus 185 v~~~~~-i~i~q~d~--A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDN--ASVFREIENP--KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred EEeccE-EEEEeccc--HhHhhhhhcc--ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 777654 77776665 2222222221 112233344688999999999999999 66777665544332111111111
Q ss_pred cCC-CeEEEEeeCCeEEEEeCCCC
Q 003331 696 ALP-SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 696 ~~~-~~i~~~t~~g~l~~~d~~tG 718 (829)
..+ ..|...+.||.|..||.+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 112 24556678999999998765
No 228
>PTZ00420 coronin; Provisional
Probab=99.02 E-value=2.9e-07 Score=101.16 Aligned_cols=222 Identities=9% Similarity=0.029 Sum_probs=138.1
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeE--------EEeeccCCcccccce
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRC--------VYKLPCGGSIFGSPA 607 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~--------~w~~~~~~~~~~~~~ 607 (829)
++.+..|+......+..+..+........+.+. +..|++|+.|+.|..||..++.. +..+..+........
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 455677776555566666555444444455554 57889999999999999876532 222333333444555
Q ss_pred eecCCCEE-EEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 608 IDEVHDVL-YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 608 ~~~~~~~l-~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
+.+++..+ ..++.|+.|..||+.+ ++........ ....+..+..++..+.+++.++.+.+|| .+++.+.++....
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~t--g~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIEN--EKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCC--CcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 66545555 4677899999999988 7766665433 2345666777788888788899999999 8888876654332
Q ss_pred ceeecCccc---c-cCCCeEEEEeeCC----eEEEEeCCC-CcEEEEEecCCcccc-ccccccccccccccccCCCcEEE
Q 003331 686 PIFAGPCTS---F-ALPSQVLICSRNG----SIYSFEQES-GNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 686 ~~~~~~~~~---~-~~~~~i~~~t~~g----~l~~~d~~t-G~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
......++. . ..++.+..++.++ .|..||.++ ++.+-....+..... .++.+. ..+.++.
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~----------~tg~l~l 279 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE----------STGLIYL 279 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC----------CCCCEEE
Confidence 211111110 1 1234566655553 699999884 555544444332211 223222 1255667
Q ss_pred EEccCCcEEEEEeecC
Q 003331 756 ICTSSGSIHILRVNLD 771 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~ 771 (829)
+|..|+.|++|+...+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 7889999999998755
No 229
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.02 E-value=2.6e-07 Score=99.60 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=166.2
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCc
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGD 549 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~ 549 (829)
-.++..+|++ +.|.+|..+|.|..+|.+.++.+.+|+.+.+-+.+..+..||. .+.+|+..|.+..||++..+
T Consensus 205 IT~ieqsPaL------DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 205 ITAIEQSPAL------DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred eeEeccCCcc------eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 3456667877 6899999999999999999999999988733345677776666 45667777999999999888
Q ss_pred EEEEEe-cC-CeeeeeeeeecCCCE-----------EEE------------------------------------eccCC
Q 003331 550 IYWTFQ-TC-GEVKCQPVVDAPRQL-----------IWC------------------------------------GSHDH 580 (829)
Q Consensus 550 ~~w~~~-~~-~~~~~~~~~~~~~~~-----------i~~------------------------------------gs~~g 580 (829)
..|... .+ +.+. ...+....-. +|+ .+.|.
T Consensus 279 l~~v~~nah~~sv~-~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 279 LINVTRNAHYGSVT-GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeccccCCcc-cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 888654 22 1110 0011111111 111 11111
Q ss_pred eEEEEEcC-------CCe-------------------------------------------------EEEeeccC--C--
Q 003331 581 NLYALDFR-------NYR-------------------------------------------------CVYKLPCG--G-- 600 (829)
Q Consensus 581 ~l~~~d~~-------tg~-------------------------------------------------~~w~~~~~--~-- 600 (829)
.++.++.. -|+ ..|.+... |
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 11111110 000 01111100 0
Q ss_pred -----------cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeecCCEEEEEeeCC
Q 003331 601 -----------SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 601 -----------~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
....+.+++.=++..++|+..|.|-.||.+. |-..-++. .........++..-+..+..++.+|
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS--GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc--CeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 0011222333356688899999999999987 76666552 2222223444444455677788889
Q ss_pred eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec-CCcccccccccccccccc
Q 003331 667 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKL 744 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~ 744 (829)
.+..|| .++.++-....+..+... +.....+.+.++..+=.|..+|..|-+++.++.. ++.+....+.
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~i--v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-------- 585 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGI--VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-------- 585 (910)
T ss_pred eEEEEecCCcceeeeeccCCCccee--eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC--------
Confidence 899999 666655555444322111 1111234455666777899999999888777663 3334333333
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++..+.+++.|+.|..||.-++
T Consensus 586 ----~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 586 ----PDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ----CCCcEEEEeecCCcEEEEeccCc
Confidence 23899999999999999999877
No 230
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.02 E-value=3.3e-09 Score=106.99 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=154.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
++..|++|.....|..||+.+-...-+..+.. .......++.|.+..|..+.||.|..||+.+..++..++.+..-.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 56788999988889999987765543333332 2222445678888999999999999999999998888877655555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+..+..++..||+|+.|..|++||..+|+.+...+....+++-- ..+.++.|.+|-.++.+.++... +...+....
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg-~cP~~dWlavGMens~vevlh~s---kp~kyqlhl 631 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG-YCPTGDWLAVGMENSNVEVLHTS---KPEKYQLHL 631 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc-cCCCccceeeecccCcEEEEecC---Cccceeecc
Confidence 55666678899999999999999999998877766555554432 23446889999999999888755 555555555
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
......+..+...+...+....|.-+.+|. .-|..+++.+....+.+..+.. .|..|..|+.+..-
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~--ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF--DDKYIVTGSGDKKA 698 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc--CceEEEecCCCcce
Confidence 555555666655555444444567777887 7787777776666665554222 24456666655433
No 231
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=5.5e-08 Score=97.68 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=130.0
Q ss_pred CCeEEEEecCCCc--EEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCC---
Q 003331 485 SDIYLFVGSHSHK--FICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCG--- 558 (829)
Q Consensus 485 ~~~~l~igs~~g~--l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--- 558 (829)
..-.+.++..|+. |+.+|-++...+-...+......++++.++|. .+++++....+|.||+.++++.......+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~ 303 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE 303 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence 3445666677774 45556566565656666665556778888887 78888888889999999988754322211
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...-.--++.++..|.+.+..|.|+.+..+|++.+-.+...+.+. ..+++.++..||+.+.+|.|+.||+....-...|
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 112222234566788888999999999999999988888776543 3445555788999988999999999984333444
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.-+... .-.+.+++.++.++.+|+..|.|.+||
T Consensus 383 ~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 383 VDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eecCcc-ceeeeeecCCCceEEeccCcceEEEec
Confidence 433222 124566677888999999999999998
No 232
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.00 E-value=6.6e-08 Score=91.96 Aligned_cols=240 Identities=9% Similarity=0.073 Sum_probs=146.4
Q ss_pred eceEEee-CCcEEEEEEeCCEEEEEEcCC-CcEEEE--EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003331 520 CSAAVLA-DFSQVVVGCYKGKIYFLDYLT-GDIYWT--FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~-~~~~v~vg~~dg~l~~~d~~t-G~~~w~--~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
+...+++ ....+.+|++|+.|.+|+.++ |...-+ ....+.+.+ ..+.+++..+++|+-|+.+..||+.+|+..-.
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 4455666 445666999999999999876 554332 223344433 45677788999999999999999999976654
Q ss_pred eccCCcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 596 LPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
-...+.+...-.+... -..|..|++|.+|..||... -.++-+.++++..+. .......+.+++.+..|.+|+ +
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~LPeRvYa---~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQLPERVYA---ADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeeccceeee---hhccCceeEEEecCCcEEEEEcC
Confidence 4333333332223221 13578899999999999886 667777777665432 222356788888899999999 7
Q ss_pred CCCEEEEeecCCceeecCcc--cccCCCeEEEEeeCCeEEEEeCCCC--cEEEEEecCCccc--cc-ccccccccccccc
Q 003331 674 SGSIIWRCRTGGPIFAGPCT--SFALPSQVLICSRNGSIYSFEQESG--NLLWEYSVGDPIT--AS-AYIDEHLQLKLES 746 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~--~~~~~~~i~~~t~~g~l~~~d~~tG--~~~w~~~~~~~~~--~~-~~~~~~~~~~~~~ 746 (829)
++....+.....--+-..++ ..+.++ -.+|+.+|.+.......+ +....++.+-... .. .+..+. .+
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs-----i~ 258 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS-----IA 258 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc-----eE
Confidence 76544332211111111122 233333 477888888777766665 3334444332111 00 111111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+.-+.+.....||.+..||.+..
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eecccceEEEecCCceEEEecchhh
Confidence 2233567777778999999998754
No 233
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=3.1e-08 Score=103.59 Aligned_cols=281 Identities=16% Similarity=0.152 Sum_probs=173.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEE---EEcCCceeeceEE-eeCCcEEEEEEeCCEEEEEEcCCC--cEEEEEec---
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWE---IKLEGRIECSAAV-LADFSQVVVGCYKGKIYFLDYLTG--DIYWTFQT--- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~---~~~~~~~~~~~~~-~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~~~--- 556 (829)
+..++.+|+|-.|..|+...+. .|- ...+...+.+.++ ..+...+..|+.|+.|+.||.++| +.+-++..
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4467788889999999987764 232 2334443334444 556667888999999999999998 34433321
Q ss_pred ---C-C--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 557 ---C-G--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 557 ---~-~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
. + ....+....+.+..|..|+..+.|+.||+.+++.+-++..+....-...+.+++.+++.++.||.|..||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 1 1 112222223223355667788899999999999888887666666667777778899999999999999988
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCC
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
. -..+.++..+.....+....++-..+|.|..+|.|++-| .+- +..--.+...++.... ....++.+|++|.|+
T Consensus 244 q--QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~--~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 244 Q--QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH--LHEHDNSVWVTTTDS 319 (735)
T ss_pred c--cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh--hccccCCceeeeccc
Confidence 6 455666665555555555555667899999999999988 542 2111122222322211 122245679999999
Q ss_pred eEEEEeCCCCc------EEEEEecCCccccc-----cc--cccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 709 SIYSFEQESGN------LLWEYSVGDPITAS-----AY--IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 709 ~l~~~d~~tG~------~~w~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.|.+|...--. -.|.........+. |. +.+...+...+.+.+...+..-...|.+..||.-..
T Consensus 320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred cceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 99998642110 01111111110000 10 111111222223455778888888999999998644
No 234
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.94 E-value=2.3e-07 Score=98.03 Aligned_cols=219 Identities=12% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++++.+|+.|+.+..|.+.+..++..+..+...+++.....+ +.++.|++|.++..|- .|++....+.+....-+.
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~-~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED-GTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAV 146 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc-CceEecccccceEEec--chhhhcccCCcchheeee
Confidence 6788999999999999999999998888777766555444444 4589999999999996 466655544444333333
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
..- ..+.+++|+.|..|+.|.. |+.+..+..+.......++-+ +..++.++.||.|..|+.. |+.+-.+..+.
T Consensus 147 ~~l-~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~~---ge~l~~~~ght 219 (745)
T KOG0301|consen 147 ASL-PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDLD---GEVLLEMHGHT 219 (745)
T ss_pred eec-CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CCCeEeecCCceEEEEecc---Cceeeeeeccc
Confidence 333 2357889999999999985 667777766655555454444 3567778889999999985 78887776666
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
....+.....+++.+..++.|+++..|+.. ...-....++ .+++..+. .+|.|++|+.||.|+.|....
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L---~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVL---LNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEe---eCCCEEEeccCceEEEEEecc
Confidence 666666666678888888899999999832 3433344433 34444433 377899999999999997653
No 235
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.94 E-value=2.6e-08 Score=103.05 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=148.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
...+.+-.+.+|+|+.+| |+.||..+|+.+..-..+-......++.+-.+.+|+|+++| ++..+++. |.+..-+
T Consensus 168 ~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~sn~~ 241 (671)
T COG3292 168 VALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRASNWG 241 (671)
T ss_pred eeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccccccC
Confidence 344445557899999776 99999999998764332221222223344568899999775 88888665 5544322
Q ss_pred c-----ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee--eeeeecCCEEEEEeeCCeEEEEcC
Q 003331 601 S-----IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS--LCITSANRHVICCLVDGHVVALDS 673 (829)
Q Consensus 601 ~-----~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s--~~~~~~~~~l~~~~~~g~i~~~d~ 673 (829)
. .+.. ...+..+.+|+||.+| +..+.... .............++. .-....++.+|+++.++.+...+.
T Consensus 242 ~~lp~~~I~l-l~qD~qG~lWiGTenG-l~r~~l~r--q~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 242 PMLPSGNILL-LVQDAQGELWIGTENG-LWRTRLPR--QGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred CCCcchheee-eecccCCCEEEeeccc-ceeEecCC--CCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 1 2222 2334478899999887 44444443 2211111111111111 223345789999987665544433
Q ss_pred CCCEEEEee-cCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccCC
Q 003331 674 SGSIIWRCR-TGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 674 ~g~~~w~~~-~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
+-...-.+. ..+. +-.....+...+..++..+..|.+...+..+|..+... ........+...+ .
T Consensus 318 ~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d------------~ 385 (671)
T COG3292 318 DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLED------------S 385 (671)
T ss_pred hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhc------------c
Confidence 211111111 1111 11111111223556788877888999999999876542 2222222222222 3
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-----ECCEEEEeeeCCeEEEEeccccc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-----IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
++.+|+++...+|..|+.++ .+..+......+++++. -++.+|+|+.+| |...+++.++
T Consensus 386 ~g~lWlgs~q~GLsrl~n~n---------------~~avlde~agl~ss~V~aived~dnsLWIGTs~G-lvk~~pe~~~ 449 (671)
T COG3292 386 RGRLWLGSMQNGLSRLDNKN---------------EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGG-LVKRDPESGR 449 (671)
T ss_pred CCcEEEEecccchhhhccCC---------------cccccccccCCcccceeeeeecCCCCEEEeccCC-eEecCccccc
Confidence 88999999987788887653 12222222222333332 257799999765 6677777766
Q ss_pred c
Q 003331 826 L 826 (829)
Q Consensus 826 ~ 826 (829)
+
T Consensus 450 v 450 (671)
T COG3292 450 V 450 (671)
T ss_pred h
Confidence 4
No 236
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=100.60 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=164.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..+++..|..|..|..||...++ ..-.+........+..+..++..+++.+.|+.+..||..+++.+.++..+..-.+
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt 265 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVT 265 (459)
T ss_pred CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccccee
Confidence 45788888888889999976555 1112222222334566777888899999999999999999999888877655444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..-+.-....++.|+.|..+..||+..+.+...+-... ....++.. ...+..+-.++.|..||..+ +........
T Consensus 266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~ 340 (459)
T KOG0288|consen 266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS--ISDVISGHFDKKVRFWDIRS--ADKTRSVPL 340 (459)
T ss_pred eehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEec--ceeeeecccccceEEEeccC--CceeeEeec
Confidence 43343334448889999999999998876655443222 12222222 24566677889999999887 666666666
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCc---ccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPC---TSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~---~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
++ ...+..++.++..+..++.+..+..+| .+..+...+...+...++.. +..-.+..+..|+.||.||.|+..+|
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 65 346677777888899999999999999 77777766654443222211 11113457888999999999999999
Q ss_pred cEEEEEecC
Q 003331 719 NLLWEYSVG 727 (829)
Q Consensus 719 ~~~w~~~~~ 727 (829)
++.......
T Consensus 420 KlE~~l~~s 428 (459)
T KOG0288|consen 420 KLEKVLSLS 428 (459)
T ss_pred eEEEEeccC
Confidence 998766543
No 237
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=4.2e-07 Score=87.02 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=147.3
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.-+..|.+|..+|.|..||..|-.+-..+..+-+..++.+.+.+|..+...+.|..+..||+..|.++.++.....+...
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~ 112 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA 112 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence 34678999999999999999987665556666667788999999999999999999999999999999988887776655
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEE-eeccCCcccccc---eeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVY-KLPCGGSIFGSP---AIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~---~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
.......+.+++.-.+..-+.++..+++..- .....+....++ +++..+++|++|+..|.+..+|..+ -+.+-.
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t--~e~vas 190 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET--LECVAS 190 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch--heeeee
Confidence 4433334444443333333444433322111 111222222222 4677788999999999999999887 555443
Q ss_pred eccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-C-------CCCEE--EEeec--CCceeecCcccccCCC-eEEEEe
Q 003331 640 HELEV-PAFASLCITSANRHVICCLVDGHVVALD-S-------SGSII--WRCRT--GGPIFAGPCTSFALPS-QVLICS 705 (829)
Q Consensus 640 ~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g~~~--w~~~~--~~~~~~~~~~~~~~~~-~i~~~t 705 (829)
..... ...-...+...+..+.+.+.|..|..|+ + .|++- .+++. ....... +.+..+| .|..++
T Consensus 191 ~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~--ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 191 FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK--CCFSGDGEYVCAGS 268 (405)
T ss_pred eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh--eeecCCccEEEecc
Confidence 33222 2223344445566777777777776665 3 11111 11110 0001111 1122233 444444
Q ss_pred -eCCeEEEEeCCCCcEEEEEe
Q 003331 706 -RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 706 -~~g~l~~~d~~tG~~~w~~~ 725 (829)
....+|.|....|.++-.+.
T Consensus 269 ~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred ccceeEEEEecCCcceeeeec
Confidence 34579999999998875544
No 238
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.6e-07 Score=98.85 Aligned_cols=267 Identities=12% Similarity=0.001 Sum_probs=170.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-CCeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~ 564 (829)
.+.|.+|... .||.|+..+|++.-..+.+...+++...+.+|..|.+|+.+|.|..||.++.+.+-++.. +..-....
T Consensus 188 ~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 4566676654 499999999998776666545566888899999999999999999999888877766655 33333333
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEe-eccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.. ....+-+|+.++.+..+|....+..-. ...+....+......++..+..|..|+.+.+||... -.++.++..+
T Consensus 267 aW--~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--~~p~~~~~~H 342 (484)
T KOG0305|consen 267 AW--NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--PEPKFTFTEH 342 (484)
T ss_pred ec--cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--ccccEEEecc
Confidence 33 346778899999999999877654433 333344445555666677888888999999999743 2333333333
Q ss_pred Ccceeeeeeeec-CCEEEEE--eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCC
Q 003331 644 VPAFASLCITSA-NRHVICC--LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQES 717 (829)
Q Consensus 644 ~~~~~s~~~~~~-~~~l~~~--~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~t 717 (829)
....-....++- .+.+.+| +.|+.|..+| .+|+.+-...++..|.+...... .+.+.. |..++.|..|+..+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~--~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKK--YKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCC--CCEEEEecCCCCCcEEEEeccc
Confidence 322233344443 3445554 4578899999 88988877777666554432221 122332 23345566666555
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
-+.+-.+..+..-.... +..+++..+++|+.|.+|..|+.-.
T Consensus 421 ~~~~~~l~gH~~RVl~l-----------a~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYL-----------ALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cceeeeecCCcceeEEE-----------EECCCCCEEEEecccCcEEeccccC
Confidence 44443333222221111 1223488999999999999997653
No 239
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.91 E-value=2.6e-07 Score=98.34 Aligned_cols=259 Identities=10% Similarity=0.061 Sum_probs=175.2
Q ss_pred CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 494 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.++.+..||.+|++.+.++..+ ...+..+.+.+.+|++|...|.|-.||..+...+-+...++....+....+++..+
T Consensus 392 a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 3567999999999999887665 34466777888899999999999999999988876666665555555556667778
Q ss_pred EEeccCCeEEEEEcC-----CCeEEE--------eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 574 WCGSHDHNLYALDFR-----NYRCVY--------KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~-----tg~~~w--------~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+|+.|..+..||.+ .|.... ....... ..+..+++++..+.++-.|.++-+|-.++ -+..-..
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd-vL~v~~Spdgk~LaVsLLdnTVkVyflDt--lKFflsL 546 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD-VLCVSVSPDGKLLAVSLLDNTVKVYFLDT--LKFFLSL 546 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc-EEEEEEcCCCcEEEEEeccCeEEEEEecc--eeeeeee
Confidence 899999999998853 121111 1111222 23344566677888888899988888887 5554444
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+.-...++.++++.+.+..|+.|..|-+|- .-|...-.+-. ...+.+.-+++ .....|.++.|+.+..||.++-
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeechhhh
Confidence 44444456778888999999999999888887 55654322211 11222222222 2446777889999999997766
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+.+-+++.+..-.....+ .+.|++++.++.|..|.+|....
T Consensus 625 e~iq~L~~H~~ev~cLav-----------~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWCLAV-----------SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhheeeccchheeeeeEE-----------cCCCCeEEeccCCceeEeeeccC
Confidence 555555433322222212 23388999999999999997654
No 240
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.90 E-value=3.5e-08 Score=105.83 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=152.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++..|..+|.|+.+..|.+.|-...-.++.+....+.+.+++.|-++..++.|++-..|....-+.+..+..+-.-..+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c 540 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC 540 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccce
Confidence 46788888999999999999887766666666655666778877767778888888888876666666555444333444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+...++.+||.|.+++.||..+|..+..+..+.....+..+++.+..+..|+.+|.|..||+.+ |+.+-.+..+
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~H 618 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGH 618 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC--Ccchhhhhcc
Confidence 56777889999999999999999999999999988777777888888788899999999999999998 8887777666
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.....+..++.+++.+.+|+.|..|..||
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 66677888888999999999999999998
No 241
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=2.2e-07 Score=93.48 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=133.6
Q ss_pred eceEEeeCCcEEEEEEeCCEE--EEEEcCCCcEEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEcCCCeEEEee
Q 003331 520 CSAAVLADFSQVVVGCYKGKI--YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.++-+.+....+.+++.|+.+ |.+|-++...+..............+.+.+. .|++++....+|.||..+++.....
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 355666766778888899865 5556555555555555554444455666555 7888888899999999998765433
Q ss_pred ccCCc---ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 597 PCGGS---IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 597 ~~~~~---~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
...+. ..-..-++.++..|.+.+..|.|+.+...+ ++.+-.++..+.. ...++..++..+|+.+.+|.|+.||
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v-~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVV-SDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEE-eeEEEecCCcEEEEEcCCceEEEEec
Confidence 32221 222223445567888888999999998877 8777777665543 5566777888999999999999999
Q ss_pred CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 673 SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 673 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.....+.++...+.+.............+.+|+..|.|..||.++
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 666777777766655433322222344677788889899998543
No 242
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.89 E-value=5.9e-08 Score=104.15 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=149.3
Q ss_pred cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 514 LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
.+.+.+....++++...++.++.|+++..|.+.|-..+-.|..+........+.+.+-++.++++|+.-..|....-+++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 34444556778888889999999999999999888777777766554444456665555667889998888887776777
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
..+..+-.-.....+.++..++..|+.|.++..||..+ |..+-.+..+.....+.++++.+.++..|+.+|.|..||
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 66665555555566777778888899999999999998 887777766666678888999999999999999999999
Q ss_pred CCCCEEEEeecCC-ceeecCcccccCC-CeEEEEeeCCeEEEEeCCC
Q 003331 673 SSGSIIWRCRTGG-PIFAGPCTSFALP-SQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 673 ~~g~~~w~~~~~~-~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~t 717 (829)
.+|+++-++.... .+.+.. +..+ +.+.+|+.|+.|..||..+
T Consensus 607 ~~~~~v~~l~~Ht~ti~Sls---FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLS---FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEE---EecCCCEEEecCCCCeEEEEEchh
Confidence 8988876554332 233322 2334 4566778889999998654
No 243
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.88 E-value=1.7e-06 Score=92.33 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=107.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.-.+.+|=.||.|..||..++...-+++.+.......-+...|..+..|+.|+.|..||.-.-.-+.++..+......
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 34456789999999999999988888888888776666678888889999999999999997665556666665554444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
..+..++..++..+.|+.+..||.++..+..+.-.+....-..++++ +.++.++.++.+..|++
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL 218 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence 44554567788888999999999999887766544433333444544 66677777777777765
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.86 E-value=2.6e-06 Score=89.97 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=159.1
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEE
Q 003331 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKI 540 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l 540 (829)
.+.+-+++++...-+. +.+..++.++|+.+.+|.|..+|+.+++.+.+.+.+... ....++.||++++++++ .+.+
T Consensus 26 ~~~~~~i~~~~~~h~~--~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAG--LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp -SEEEEEE-STTEEEE--EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE--TTTEEEEEEEETTEE
T ss_pred CeEEEEEcCCCCceeE--EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEEcCCCCEEEEEecCCCce
Confidence 3444566665443222 223445778999999999999999999999988877654 35778899999999975 7899
Q ss_pred EEEEcCCCcEEEEEecCCe------eeeeeeee-cCCCEEEEe-ccCCeEEEEEcCCCeEEEe--eccCCcccccceeec
Q 003331 541 YFLDYLTGDIYWTFQTCGE------VKCQPVVD-APRQLIWCG-SHDHNLYALDFRNYRCVYK--LPCGGSIFGSPAIDE 610 (829)
Q Consensus 541 ~~~d~~tG~~~w~~~~~~~------~~~~~~~~-~~~~~i~~g-s~~g~l~~~d~~tg~~~w~--~~~~~~~~~~~~~~~ 610 (829)
..+|.+|.+++.++.+.+. ...+.++. +.....++. -..+.+..+|..+.+.+.. ...+. ......+++
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~-~~~D~~~dp 181 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR-FPHDGGFDP 181 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T-TEEEEEE-T
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc-cccccccCc
Confidence 9999999999988765432 12223332 233323333 3347788888766543332 22221 222334566
Q ss_pred CCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcce---eeeeeeecCCEEEEEeeCCeE----------EEEc-CCC
Q 003331 611 VHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAF---ASLCITSANRHVICCLVDGHV----------VALD-SSG 675 (829)
Q Consensus 611 ~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~---~s~~~~~~~~~l~~~~~~g~i----------~~~d-~~g 675 (829)
++.+++++. .+..+.++|.++ ++..+..+.+.... ....+.+..+.+|.-...+.. .+++ .+.
T Consensus 182 dgry~~va~~~sn~i~viD~~~--~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKT--GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTT--TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred ccceeeecccccceeEEEeecc--ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 566777754 456788999887 88777665432211 122233445556654433221 2234 444
Q ss_pred CEEEEeecCCceeecCcccccCCCeEEEE----eeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccC
Q 003331 676 SIIWRCRTGGPIFAGPCTSFALPSQVLIC----SRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 676 ~~~w~~~~~~~~~~~~~~~~~~~~~i~~~----t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 749 (829)
+.+-+....+..+.... .-....+|+. ...+.|..+|.++-+..-++..... ....- ...
T Consensus 260 kvv~~I~~~G~glFi~t--hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e------------f~~ 325 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKT--HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME------------FNP 325 (369)
T ss_dssp SEEEEEE-SSSS--EE----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE------------E-T
T ss_pred eEEEEEECCCCcceeec--CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE------------ECC
Confidence 55555555432221111 1134579998 3457899999998866544332111 11111 123
Q ss_pred CCcEEEEEccCCc--EEEEEeecC
Q 003331 750 IDRLVCICTSSGS--IHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~--l~~~d~~~~ 771 (829)
++..+|++..++. |.++|..+.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCEEEEEEecCCCEEEEEECCCc
Confidence 4888998877655 999998865
No 245
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.5e-07 Score=101.99 Aligned_cols=183 Identities=13% Similarity=0.166 Sum_probs=129.0
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee
Q 003331 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
++.|+.++.|.++..|++...+++..|.....+.+..+-.-++++.+.|+.||.+..|++.. -+...-.++. ..+.+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~-~lITA 456 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLR-DLITA 456 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehhhh-hhhee
Confidence 57788899999999999999999998876655544333333456777899999999999886 4444333443 45578
Q ss_pred eeeeecCCEEEEEeeCCeEEEEc-CCCCEE--EEeec-------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003331 650 LCITSANRHVICCLVDGHVVALD-SSGSII--WRCRT-------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 650 ~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~--w~~~~-------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.++.++++..++|+.+|....|+ .+-++. |++.. +..|...-+.+.. .+.|.+.+.|..|..||..+-+
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-PDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC-CCeEEEecCCCceEEEeccchh
Confidence 88999999999999999999999 444443 33221 1123333222222 2379999999999999998777
Q ss_pred EEEEEecCCc----cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 720 LLWEYSVGDP----ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 720 ~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++-+++...+ +.+.. ..++.+|+.++.|..||+|+.+
T Consensus 536 lv~KfKG~~n~~SQ~~Asf-------------s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASF-------------SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hhhhhcccccCCcceeeeE-------------ccCCCEEEEeecCceEEEEeCC
Confidence 7766653222 22211 1238899999999999999863
No 246
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.84 E-value=2e-06 Score=84.60 Aligned_cols=268 Identities=15% Similarity=0.099 Sum_probs=158.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-eeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEee--c--cCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKL--P--CGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~--~~~ 600 (829)
.+.|+.|||||.+..|| ..|+...++..+.. ++...-+ .+....+..++.|..+..|-.+.|+..-+. . .+.
T Consensus 115 ~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 56899999999999999 67888887766543 3322222 223456888999988877766655433221 1 122
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCC---ce--------------------EEEeeccCCcceeeeeeeecCC
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP---FH--------------------TLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~---g~--------------------~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
...-+.....++.++..|+.|..|-.|+..+.. ++ ++-....+....++ ....+..
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~-V~w~d~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS-VVWSDAT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee-EEEcCCC
Confidence 333444455566788889999999999822210 11 01111111111122 3334578
Q ss_pred EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc--EE-EEEecCCccccc
Q 003331 658 HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN--LL-WEYSVGDPITAS 733 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~--~~-w~~~~~~~~~~~ 733 (829)
.+|.++.|-+|..|| .+|..+-+...+.......... ....|..|+.|..+..||++++. .. .++..+.+...+
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP--LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcceeEeeccc--ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 899999999999999 8888877766665544433222 24578888999999999998863 32 233323222211
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeC
Q 003331 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRD 813 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~ 813 (829)
.- ....+...++.++.|+.+..||.++-..- ++........+++.-=..+..|..|+.|
T Consensus 351 vk----------wsp~~~~~~~S~S~D~t~klWDvRS~k~p-----------lydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 351 VK----------WSPTNEFQLVSGSYDNTVKLWDVRSTKAP-----------LYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ee----------cCCCCceEEEEEecCCeEEEEEeccCCCc-----------ceeeccCCceEEEEeccCCceEEeccCc
Confidence 10 01123667888999999999999854110 0100011111221111123467778888
Q ss_pred CeEEEEe
Q 003331 814 DYIYCIA 820 (829)
Q Consensus 814 g~l~~~d 820 (829)
..|+.+.
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 8888875
No 247
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.83 E-value=1.4e-06 Score=81.43 Aligned_cols=247 Identities=14% Similarity=0.100 Sum_probs=160.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE--EEEEcCCceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.+.++..|+.++.+..|+..-++++ |....+....-..+.. ...+.+.+.+.|..+..||...+++.-.....++..
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni 110 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI 110 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce
Confidence 4567888888998888888766443 2222232211223332 233467788889999999999999988777655432
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.....++++++.++..|..|..+|..+-+.+-..+..-.. .-.+...+++..+..+..|.+.++..-. -+++...+
T Consensus 111 -~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~-ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~ 186 (313)
T KOG1407|consen 111 -NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV-NEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIK 186 (313)
T ss_pred -EEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee-eeeeecCCCCEEEEecCCceEEEEeccc--cccccccc
Confidence 2356678899999999999999999887776554332111 1112222234444455558887777554 56666666
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCceeecCcccccCC-CeEEEEeeCCeEEEEeCCCC
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG 718 (829)
.+...-..+.+.+++.++.+|+.|..+..|| ..--..-.++ ..-++.... +.-+ ..|-.+++|..|-.=+.+||
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS---FS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS---FSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE---eccCcceeeccCccceEEeEecccC
Confidence 6554445666778899999999999888888 4322221221 122332222 2223 45667788988888899999
Q ss_pred cEEEEEecCCcccccccccc
Q 003331 719 NLLWEYSVGDPITASAYIDE 738 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~ 738 (829)
..+|+.+..++.+...+...
T Consensus 264 d~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 264 DRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred CeEEEeeccCCceeEEecCC
Confidence 99999998888766555543
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=8.7e-06 Score=83.87 Aligned_cols=276 Identities=12% Similarity=0.067 Sum_probs=157.1
Q ss_pred CcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCCeE
Q 003331 528 FSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNYRC 592 (829)
Q Consensus 528 ~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg~~ 592 (829)
...+|+-... +.++.+|..+++++-++..+..... +++++++.+|++.. ++.|..||.+|++.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 3456665443 7899999999999988887654443 36778888998755 57899999999999
Q ss_pred EEeeccCCc-------ccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe
Q 003331 593 VYKLPCGGS-------IFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL 663 (829)
Q Consensus 593 ~w~~~~~~~-------~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~ 663 (829)
+.++..+.. ......+++++..+|+... +..+.++|+.+ ++.+-....+.... .-...+.... +-+
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~--vy~t~e~~~~-~~~ 164 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYH--IFPTANDTFF-MHC 164 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcE--EEEecCCccE-EEe
Confidence 998876433 1223456777788998773 57899999988 88877766543221 1112122222 223
Q ss_pred eCCeEEEE--cCCCCEEEEe-ec--C--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEecCCcccc
Q 003331 664 VDGHVVAL--DSSGSIIWRC-RT--G--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSVGDPITA 732 (829)
Q Consensus 664 ~~g~i~~~--d~~g~~~w~~-~~--~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~~~~~~~~ 732 (829)
.||....+ +.+|+..-.. .. . .+++.-|.. ...++..++.+..|.|+.+|..+.+. .|........ .
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~-~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~-~ 242 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY-SNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEK-A 242 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCccccccCCce-EcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccc-c
Confidence 45555443 3556533111 11 1 223333311 12134444444459999999544332 2332111100 0
Q ss_pred ccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE
Q 003331 733 SAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM 802 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 802 (829)
..+....++. .+....++.+|+... .+.|+++|..++ +.............-.+.
T Consensus 243 ~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-------------kvi~~i~vG~~~~~iavS 307 (352)
T TIGR02658 243 DGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-------------KRLRKIELGHEIDSINVS 307 (352)
T ss_pred cccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-------------eEEEEEeCCCceeeEEEC
Confidence 0000000000 112234788888532 236999998865 444444443333222222
Q ss_pred -ECC-EEEEeee-CCeEEEEeccccccc
Q 003331 803 -IGG-RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 803 -~~~-~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
++. .||+.+. ++.|..+|..+++..
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 345 6777763 677999999998764
No 249
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=98.82 E-value=1.9e-07 Score=99.81 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE--Eec
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV--LVE 95 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~--i~d 95 (829)
..++.++++||+++++..+.+.+.| ++++++.||+|| +.++ ..|..- .+..--..+-++ ++|
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la--~eC~~g------------~lHl~ed~~~vE~~ivD 275 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA--STCRCG------------TLHLNEDLVHIEKQYLD 275 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE--EecCCC------------CEEEccccEEEEeeEEC
Confidence 4799999999999999999999999 789999999999 4432 223210 011111122333 666
Q ss_pred CCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC----Cc----E-EEE
Q 003331 96 SDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS----GD----L-VFL 166 (829)
Q Consensus 96 ~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~----l-~~~ 166 (829)
+++ .++.+|.+ +.+. ...++ -|+|||+++..++ |. | .+.
T Consensus 276 ~~~----~~~~ViT~------L~n~----~~PlI------------------RYrtGD~~~~~~~~C~CGr~~~~i~~I~ 323 (430)
T TIGR02304 276 EHK----RFVPIITD------FTRT----TQPIV------------------RYRLNDILVESEQPCSCGSATMAIERIE 323 (430)
T ss_pred CCC----ceEEEEec------CCCc----cceEE------------------eeeCCCEEEeCCCCCCCCCcccccCCcc
Confidence 543 13333332 2221 11222 2999999987443 43 3 388
Q ss_pred eecCCcEEE---CC--eeeChHHHHHHHh-CCCCeeEEEEEE
Q 003331 167 GRKDRTIKI---NG--QRMALEEIEHTLR-GHPDVVDTAVVS 202 (829)
Q Consensus 167 GR~dd~ik~---~G--~~i~~~~iE~~l~-~~~~v~~~~v~~ 202 (829)
||.||++++ +| .+|.|..++.++. ..+.|.+.-++.
T Consensus 324 GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q 365 (430)
T TIGR02304 324 GRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ 365 (430)
T ss_pred CccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence 999999996 44 4459999998744 578888876664
No 250
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1e-06 Score=93.03 Aligned_cols=263 Identities=13% Similarity=0.079 Sum_probs=166.0
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCccccccee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~ 608 (829)
.|.++. ...+|+|+..+|++.-..+.+..-.++..+..++..|.+|..+|.+..||.++.+.+..... +..-++....
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 455554 55799999999998777776555566667777889999999999999999988776666554 3333333333
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 686 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~ 686 (829)
. ...+-.|+.++.+..+|... .+..-. ...+....-......++..+..|..|+.+.+|| .+-.++.++.....
T Consensus 269 ~--~~~lssGsr~~~I~~~dvR~--~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a 344 (484)
T KOG0305|consen 269 N--SSVLSSGSRDGKILNHDVRI--SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA 344 (484)
T ss_pred c--CceEEEecCCCcEEEEEEec--chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce
Confidence 3 47788899999999988776 333222 222222223345566788888888999999999 55455444433222
Q ss_pred -eeecCcccccCCCeEEEE--eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE--EEccCC
Q 003331 687 -IFAGPCTSFALPSQVLIC--SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC--ICTSSG 761 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~~~--t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~G 761 (829)
+......+. ..+.|.+| +.|+.|..||..+|+.+-....++.+....+... .+.+. .|..++
T Consensus 345 AVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~------------~kEi~sthG~s~n 411 (484)
T KOG0305|consen 345 AVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKK------------YKELLSTHGYSEN 411 (484)
T ss_pred eeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCC------------CCEEEEecCCCCC
Confidence 211111111 23455554 5789999999999999888887777755544433 22222 345566
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEeccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~t 823 (829)
.|.+|+..+- +......-+...+-.... ++..|.+|+.|.+|.+|+.-+
T Consensus 412 ~i~lw~~ps~-------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 412 QITLWKYPSM-------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cEEEEecccc-------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 6777765431 111111111111111111 467999999999999998754
No 251
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.78 E-value=1.2e-06 Score=87.63 Aligned_cols=232 Identities=11% Similarity=0.057 Sum_probs=151.6
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
...+..|..|..+.++|..+++.+-.++.+..-.....+..+...+.+++.|..|+.|...+-...-....+........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 45678888888899999999988877777766556667777777888899999999998766544333333333333334
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+.+++.++.|++....|..+|..+-+..... -...+..+.+++-.+-.|+.+|.+..||++. +...-++..+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--~~~~a~Fpgh 388 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--QTNVAKFPGH 388 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--ccccccCCCC
Confidence 45577889999999988888999999887765532 2345666777444555678899999999987 5555556555
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--ceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCc
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.....+..+..++=.+.+++.++.|.+|| +.-+..-++.... ++.+ +.++.. ..+.+++.+=.||.++.. +
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s---~~fD~SGt~L~~~g~~l~Vy~~~k~--~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS---LSFDQSGTYLGIAGSDLQVYICKKK--T 463 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee---EEEcCCCCeEEeecceeEEEEEecc--c
Confidence 44445566654444566677788899999 5443332333322 1222 123333 345555555556666544 3
Q ss_pred EEEEE
Q 003331 720 LLWEY 724 (829)
Q Consensus 720 ~~w~~ 724 (829)
-.|+.
T Consensus 464 k~W~~ 468 (506)
T KOG0289|consen 464 KSWTE 468 (506)
T ss_pred cccee
Confidence 45654
No 252
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.76 E-value=1.3e-07 Score=92.07 Aligned_cols=261 Identities=11% Similarity=0.079 Sum_probs=155.2
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
..++.|+.||.|..||+.+.+++|++..+.+.+...++.. +..+.+| .|.+|..|.. .|..+.++.....+...-..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvg-dDKtvK~wk~-~~~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVG-DDKTVKQWKI-DGPPLHTILGKSVYLGIDHH 156 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEec-CCcceeeeec-cCCcceeeeccccccccccc
Confidence 4588899999999999999999999999887766666655 3444444 5888888873 45555555433322211111
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
..+.+++.+ ...+-.||..--.++..+..+...+.+.-+.+. ...|..+..|+.|+.||..+ +.++.+......
T Consensus 157 --~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~--~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 157 --RKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ--ASPLKKVILTMR 231 (433)
T ss_pred --ccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc--CCccceeeeecc
Confidence 112233322 235888988666666555544433333222221 24455566899999999887 776665543322
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
. ..++..+..-...+++.|..+|.+| ..- ..+-.+.. ...+....+.+ .+..+..|+.|..|..|....|.-.-
T Consensus 232 T-N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 232 T-NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred c-cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC--CcchhccccccceEEEeecCCCcchh
Confidence 1 3445555444566677889999999 432 22222211 11222222211 24468889999999999988776432
Q ss_pred EEec--CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 723 EYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 723 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
.|.. -..+.+..+. .+..+++.|++++.|..|.+..
T Consensus 309 iYhtkRMq~V~~Vk~S------------~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYS------------MDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhHhhhheeeEEEEe------------ccccEEEecCCCcceeeeecch
Confidence 2211 1112222222 2378999999999999997753
No 253
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=8.7e-07 Score=84.88 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=125.1
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+..++..|.++.+||.||.|..||..|-.+-..+..+-...++.+++.++..++++|.|..+..||...|.++.++...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 35678888899999999999999999887765555556566677788888899999999999999999999999988887
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCCcceee---eeeeecCCEEEEEeeCCeEEEEc-CC
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFAS---LCITSANRHVICCLVDGHVVALD-SS 674 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s---~~~~~~~~~l~~~~~~g~i~~~d-~~ 674 (829)
.+++.......+.+..++.-.+..-+.++..+ ++..-. .+.......+ ..+...+++++.|+..|.+.+++ .+
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 77766555444344443333333233444333 111110 0111111111 23555688999999999999999 77
Q ss_pred CCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 675 GSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 675 g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
-+.+..+.... .+-.. +....+..+.+-+.|..|..|+.+
T Consensus 185 ~e~vas~rits~~~IK~I--~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQI--IVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeeeeechheeeeEE--EEeccCcEEEEecCCceEEEEehh
Confidence 66664433221 11111 112234456677777777777654
No 254
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.75 E-value=2.2e-06 Score=80.14 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=144.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
...+..++.+..+..||..++++.-........ ...+.+++|+++.++..|..|..+|..+-+++..++..-.+.- ..
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne-~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE-IS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeee-ee
Confidence 345677788889999999999998776654432 2567889999999999999999999998888766554332221 12
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
+..+++.++..+..|.+..+.-..-+++..++.+......+.+++++.++.+|+.|..+-.||++. --..-.+.....
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC~R~isRldw 232 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LICERCISRLDW 232 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhhheeeccccC
Confidence 233445555555568888888777788877777665545566788888999999999889999875 222222222222
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
..-+..++-++.++..++.|-.|-.-+ ++|..+|+.+..++.++..
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVA 279 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVA 279 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEE
Confidence 234566677888888888887776666 9999999999888776654
No 255
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.72 E-value=7.5e-05 Score=74.97 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=163.1
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcEEEEEecCCeee----
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDIYWTFQTCGEVK---- 561 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~~w~~~~~~~~~---- 561 (829)
++++.+|..+++.+-..+.+-. ....++++++.+|+.+. ..-|-.||.+|-++.+....+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999998877665432 35677889999997532 2348899999999999888765311
Q ss_pred ---eeeeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 562 ---CQPVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 562 ---~~~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
....++.+++.+|+- +-.-.|-.+|.+.++.+-.+...+.....|.- +...+.-+.||.+..+.++. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~---~~~F~~lC~DGsl~~v~Ld~-~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG---NRGFSMLCGDGSLLTVTLDA-DGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE---TTEEEEEETTSCEEEEEETS-TSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC---CCceEEEecCCceEEEEECC-CCCE
Confidence 112345566777764 33457899999999999888887765544432 35677777899998888874 2665
Q ss_pred EEeec-----cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecC----------C-ceeecCcccc
Q 003331 637 LWLHE-----LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTG----------G-PIFAGPCTSF 695 (829)
Q Consensus 637 ~w~~~-----~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~----------~-~~~~~~~~~~ 695 (829)
.-+.. ...+.|..+.....++.+++.+.+|.|+..| ...... |..-.. + ..+.. .
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~----~ 246 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY----H 246 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE----E
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee----c
Confidence 52221 1234555666666678888899999999999 544433 332110 0 01111 2
Q ss_pred cCCCeEEEEeeCC----------eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE-ccCCcEE
Q 003331 696 ALPSQVLICSRNG----------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIH 764 (829)
Q Consensus 696 ~~~~~i~~~t~~g----------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~l~ 764 (829)
...+.+|+--+.| .|+.+|.++++.+.+.++...+.+.....+ ..-++|.. ..++.|+
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQD-----------DKPLLYALSAGDGTLD 315 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESS-----------SS-EEEEEETTTTEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccC-----------CCcEEEEEcCCCCeEE
Confidence 2456888865433 599999999999887776555432221111 15567655 4578899
Q ss_pred EEEeecC
Q 003331 765 ILRVNLD 771 (829)
Q Consensus 765 ~~d~~~~ 771 (829)
++|..+|
T Consensus 316 v~D~~tG 322 (342)
T PF06433_consen 316 VYDAATG 322 (342)
T ss_dssp EEETTT-
T ss_pred EEeCcCC
Confidence 9999977
No 256
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.72 E-value=2.5e-06 Score=87.13 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=162.3
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEE-EEE----EcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVL-WEI----KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~-w~~----~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
+..+-+++.|+.|..|.+||...-.-. ..| +.......+..++..++.|++.+...-...|| .+|..+-.+.-+
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~~~~e~~KG 254 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD-RDGFEIVEFSKG 254 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc-cCCceeeeeecc
Confidence 456779999999999999997531110 011 12223344566777778888777677788888 778776655433
Q ss_pred Ce-------------eeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeE-E--Eeecc-C-Cc-ccccceeecCCCEEEE
Q 003331 558 GE-------------VKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRC-V--YKLPC-G-GS-IFGSPAIDEVHDVLYV 617 (829)
Q Consensus 558 ~~-------------~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~-~--w~~~~-~-~~-~~~~~~~~~~~~~l~v 617 (829)
+. -..+..+.+ ..+.+++.++||.++.||..+-+. + .+... + .. ...++.++.++..|..
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 21 111222332 356688899999999999875432 1 11111 1 12 3345566776777788
Q ss_pred EecCCeEEEEEccCCCceEEEeec-c--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEeec-CCceeecC
Q 003331 618 ASTSGRLTAISVKALPFHTLWLHE-L--EVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCRT-GGPIFAGP 691 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~-~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~-~~~~~~~~ 691 (829)
|..+|.|..|+....+-.+...+. . ......++.++.+++++..=+.|+.+.+|| . -.+.+..... ..+.-...
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD 414 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence 888999999996432222222221 1 223457778888888888888899999999 3 3444432221 11111111
Q ss_pred cccccCC-CeEEEEee------CCeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 692 CTSFALP-SQVLICSR------NGSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 692 ~~~~~~~-~~i~~~t~------~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
|. +..+ ..|+.|+. .|.|+.||..+-..+.++.+.... ....+. +.=+.|++|+.||++
T Consensus 415 c~-FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh------------pkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 415 CC-FSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH------------PKLNQIFAGSGDGTA 481 (641)
T ss_pred cc-cCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec------------chhhheeeecCCCce
Confidence 22 2223 34555542 468999999998888877765322 112222 224678899999999
Q ss_pred EEE
Q 003331 764 HIL 766 (829)
Q Consensus 764 ~~~ 766 (829)
++|
T Consensus 482 ~vy 484 (641)
T KOG0772|consen 482 HVY 484 (641)
T ss_pred EEE
Confidence 876
No 257
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.71 E-value=1.1e-06 Score=88.21 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=140.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC-cEEEEEEcCC-----------c-----eee----ceEEe-eCCcEEEEEEeCCEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRS-SVLWEIKLEG-----------R-----IEC----SAAVL-ADFSQVVVGCYKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-~~~w~~~~~~-----------~-----~~~----~~~~~-~~~~~v~vg~~dg~l~~ 542 (829)
.++++.+|+.+-.|-.||+.=- ...-.+.++. + -.. ..... .-.+.|..|+.|.+|..
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3568999999999999987521 1111111110 0 000 01111 11246888999999999
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcC---CCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 543 LDYLTGDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFR---NYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~---tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
||..+|++.-++..++.-..+..+. .....++.|++|+.+...|.. .-...|++...-....---. .....+++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~--se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH--SENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC--CceeEEEe
Confidence 9999999998877544333333333 345678889999999999977 44467877543221111111 12668889
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-C--CCCEEEEeecCCceeecCccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD-S--SGSIIWRCRTGGPIFAGPCTS 694 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~--~g~~~w~~~~~~~~~~~~~~~ 694 (829)
+.+|.|+.+|... .|+.+|+.+.+...+++.++... .+.+..++.++.+..|+ . +.+........-....+....
T Consensus 349 tddG~v~~~D~R~-~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 349 TDDGTVYYFDIRN-PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred cCCceEEeeecCC-CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 9999999999986 47999999887766666555433 45566677778787776 2 332222111110111111111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
......+.+|...+.+..||..++..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCcceEEEecCccceEEEeecccChh
Confidence 22334666777777788888776654
No 258
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=6.2e-05 Score=71.13 Aligned_cols=262 Identities=10% Similarity=0.095 Sum_probs=159.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEE-----cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE--EEEecCCee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIK-----LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY--WTFQTCGEV 560 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~--w~~~~~~~~ 560 (829)
.++.++.|..|..|+...+.- |... .+.+..-+++.++.+.+|.++++|.++..|...+++.. -..+.+..-
T Consensus 29 ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE 107 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE 107 (312)
T ss_pred EEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc
Confidence 477778888999999775432 5543 23455567888899999999999999999987777654 334444433
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeE---EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc-CCCceE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK-ALPFHT 636 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~-~~~g~~ 636 (829)
.-+..+..+++++.+.+.|..+..|....+.. .-.++.+..-.-..+..+..+.|+.++.|++|..|.-. ...=..
T Consensus 108 VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c 187 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC 187 (312)
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE
Confidence 33456777889999999999999998764432 22222222222223344445788889999999888766 211223
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..++.......-+..+.+.+.++..++.++.+.++- .++ +......+++..| -. ++.|-.++.|+.|..|..
T Consensus 188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~---W~-~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVP---WD-NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeee---ec-ccceEeccCCCEEEEEEe
Confidence 333333333445556666677888888888776654 211 1111122344443 22 567888888888887765
Q ss_pred CCC--cEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 716 ESG--NLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 716 ~tG--~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.++ ...|+.-. ...+.+..+.. ...+++..++.||.|.+|..
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-----------~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-----------KVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcC-----------CCCCceeecCCCceEEEEEe
Confidence 542 22332211 11111111111 12688999999999998864
No 259
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.70 E-value=3.3e-07 Score=90.92 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=151.1
Q ss_pred ccccccccccccccc-----ccc---ceEE-eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE
Q 003331 460 GFIQELWKVHMESCV-----DAS---PLVV-LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ 530 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~-----~~s---p~v~-~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 530 (829)
...-.+|.+..+++- .++ ..-+ +..++..++..++|+.+..||..+++.+-++..+..-.+++-+......
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc
Confidence 455677988877742 111 1111 2334567778889999999999999888777776554444445444445
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003331 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
++.|+.|..+..||...+.+..++-....+.. ++.. .-.+..|-.|+.|+.||..++.+......++.+ .+..+..
T Consensus 276 vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD--I~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~v-tSl~ls~ 351 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYCSKTVLPGSQCND--IVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRV-TSLDLSM 351 (459)
T ss_pred eeeccccchhhhhhhhhhheeccccccccccc--eEec-ceeeeecccccceEEEeccCCceeeEeecCcce-eeEeecc
Confidence 89999999999999988877665433322211 1111 233555667899999999999999998888744 4444555
Q ss_pred CCCEEEEEecCCeEEEEEccCCCceEEEeeccCC----cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003331 611 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEV----PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~----~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
++..|...+.+..+-.+|..+ .++...+.... ......++++++.++..|+.+|.|++|+ .+|++......
T Consensus 352 ~g~~lLsssRDdtl~viDlRt--~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 352 DGLELLSSSRDDTLKVIDLRT--KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCeEEeeecCCCceeeeeccc--ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 567788888999999999887 45544443221 1124567888999999999999999999 88988766654
No 260
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.70 E-value=7.1e-06 Score=77.04 Aligned_cols=215 Identities=10% Similarity=0.054 Sum_probs=141.8
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
+.....-+..+|+.++..+.|...-.|-..+|+.+-++..+.....+.-++-+...+++|+.|..+..||.++|+.+...
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 33334455667888999999998888888899999988876544444445556788999999999999999999998777
Q ss_pred ccCCcccccceeecCCCEEEEEec-----CCeEEEEEccCCC-----ceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAST-----SGRLTAISVKALP-----FHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-----~g~l~~~~~~~~~-----g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
..+..+...- ++..++.+.+.+. .+.|..+++...+ -++..+...+.....+....+.+..|+.|-.+|
T Consensus 91 k~~~~Vk~~~-F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 91 KTNSPVKRVD-FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred ecCCeeEEEe-eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC
Confidence 6665544333 3333444444443 3567778776322 122444444333334445556788999999999
Q ss_pred eEEEEc-CCCCEEEEee-cCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc
Q 003331 667 HVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASA 734 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 734 (829)
.|..|| .+|+..-... ......+. +....+.. .+.++.|..-..+|..+-.++-+|....++.+..
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind--~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKIND--LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred cEEEEEcccCceeeechhhhcccccc--ccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 999999 8886653321 11111111 12223444 4456788899999999988888887777765544
No 261
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=2.8e-05 Score=76.65 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC--CEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+...|-+|+.+| ...|+...-........++-...-..++.+ .+.+-+.+ ..+..++.+.+..+-.+..+..+.+
T Consensus 16 d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~ 92 (391)
T KOG2110|consen 16 DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILA 92 (391)
T ss_pred ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEE
Confidence 445677788887 455554432222222222222223333332 33333323 2477778777777777776666654
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCC--EEEE--EecCCeEEEEEccCCCceEE
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHD--VLYV--ASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~--~l~v--~t~~g~l~~~~~~~~~g~~~ 637 (829)
.-. ..+++.+.-.+ .+|.+|+++-+++.++... ........++.+.+ ++.. .+..|.|+.||..+ -+..
T Consensus 93 Vrm---Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v 166 (391)
T KOG2110|consen 93 VRM---NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPV 166 (391)
T ss_pred EEE---ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceee
Confidence 322 34555555433 4999999999998877654 23333333433333 3322 23468899999887 6666
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEE-Ec-CCCCEEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEe
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVA-LD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~-~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d 714 (829)
-....+.......++..++..+..++..|+|.. +. .+|+.++++..+....+.-.+.+..+.. +-+.+..++|+.|.
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 667777777788889999999999999998765 55 8999999988765322221222333444 44555667788777
Q ss_pred CCC
Q 003331 715 QES 717 (829)
Q Consensus 715 ~~t 717 (829)
.++
T Consensus 247 L~~ 249 (391)
T KOG2110|consen 247 LEK 249 (391)
T ss_pred ecc
Confidence 654
No 262
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=4.4e-06 Score=91.50 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=155.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~ 558 (829)
..++.+|++.+.+|.|..|+..+-...-. ....+. ....+....+.+.+|+.++.+.+|...+|+ ++-+|..+-
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~--~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~ 99 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE--LVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPI 99 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCcccCCchhhccCc--eeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccc
Confidence 44566888888899999998655421111 111111 123444455689999999999999877765 344555432
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
. ..++..++..+.+|+.|-.|.+++..+......+..+........+++++..|.+.+.+|.|++|++++ |....
T Consensus 100 r---~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~--~~~~~ 174 (933)
T KOG1274|consen 100 R---DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD--GILSK 174 (933)
T ss_pred e---EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc--chhhh
Confidence 2 234566778899999999999999988877777766666666777888888999999999999999998 65544
Q ss_pred eeccC--------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccC-CCeEEEEeeCC
Q 003331 639 LHELE--------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL-PSQVLICSRNG 708 (829)
Q Consensus 639 ~~~~~--------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~-~~~i~~~t~~g 708 (829)
....- ..+...+...++++.+.+...++.|.+|+ .+....+.+..........++.... +..|-.++.+|
T Consensus 175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 33221 12224456777889999988999999999 6666666665432111111112222 44677888999
Q ss_pred eEEEEeCCC
Q 003331 709 SIYSFEQES 717 (829)
Q Consensus 709 ~l~~~d~~t 717 (829)
.|..||.++
T Consensus 255 ~I~vWnv~t 263 (933)
T KOG1274|consen 255 QILVWNVDT 263 (933)
T ss_pred cEEEEeccc
Confidence 999999885
No 263
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.66 E-value=2.9e-07 Score=91.14 Aligned_cols=235 Identities=11% Similarity=-0.003 Sum_probs=151.4
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
..+...++|..|++|++.|.+-.|+..+-...-..+.++....+..+..++..++.|+.+|.|..|++.-..++-....+
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 34567788899999999999888884221111112335566666667777788888999999999987643332222222
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
...+....+++++.....++.||.+.+||... .+..-....+.-..-+....+..+.|+.++.|..|..+| ++|..+
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccC--CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 23334455565567778888899999999665 333222222333334555666788999999999999999 899887
Q ss_pred EEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc-ccccccccccccccCCCcEEEE
Q 003331 679 WRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
-+...... +....+ ....+.+..++.|..+..||.++-+.+..+..+.....+. +.. ...+++..
T Consensus 258 ~tlh~HKntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP-----------~~~~lfts 324 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP-----------LNESLFTS 324 (464)
T ss_pred hhhhhccceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc-----------ccccceee
Confidence 55443332 222211 1123568888999999999998766665555333222211 111 12678888
Q ss_pred EccCCcEEEEEee
Q 003331 757 CTSSGSIHILRVN 769 (829)
Q Consensus 757 ~~~~G~l~~~d~~ 769 (829)
|..||.|+.|...
T Consensus 325 gg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 325 GGSDGSVVHWVVG 337 (464)
T ss_pred ccCCCceEEEecc
Confidence 9999999998765
No 264
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.66 E-value=5.3e-06 Score=83.10 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=148.8
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
..+..|..|..+.++|..+++++-.+..+..-.....+......+..++.|-.++.|...+-...-....+.........
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 35778888888999999999998888766555555566666677888999999999987655443333333333344445
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
...+++++.++.+|.....|..+ |..+-..... .-.+.+..+.+++-.+..|+.+|.+-.|| .++..+-+++...
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght 389 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT 389 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC
Confidence 55678888888888766677777 7766655443 22346677777777777788899999999 7777665655432
Q ss_pred -ceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCc
Q 003331 686 -PIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
++-. +.+..+|. +.+++.|+.|.+||.+.-+..-++...... ..+..+|. ++.++.+++.+=.
T Consensus 390 ~~vk~---i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-----------SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 390 GPVKA---ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-----------SGTYLGIAGSDLQ 455 (506)
T ss_pred CceeE---EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-----------CCCeEEeecceeE
Confidence 2222 23444554 556677888999998876644444444431 11222222 3778888877766
Q ss_pred EEEEEee
Q 003331 763 IHILRVN 769 (829)
Q Consensus 763 l~~~d~~ 769 (829)
||+++..
T Consensus 456 Vy~~~k~ 462 (506)
T KOG0289|consen 456 VYICKKK 462 (506)
T ss_pred EEEEecc
Confidence 7777654
No 265
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.5e-06 Score=92.77 Aligned_cols=235 Identities=11% Similarity=0.120 Sum_probs=155.4
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
..+.+..-.|.++-..|.|..||-.=|.++-+|.-++...-...+.+..-.++.|++|..|..|+.++.+++.+...+-.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 44555555677777789999999988999888877665555566777777777888899999999999999887766655
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEe
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRC 681 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~ 681 (829)
...+..+...--.|+.++.|-+|.+||-.+ ++.+-....+........+.+.++.|..++-|.+|.+||-.|-..-..
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 555566655445677788899999999887 777666655544445555667788999999999999999434221111
Q ss_pred ecC------------CceeecC--ccc---cc------------CCCeEEEEeeCCeEEEEeCCCCcEEEEEec----CC
Q 003331 682 RTG------------GPIFAGP--CTS---FA------------LPSQVLICSRNGSIYSFEQESGNLLWEYSV----GD 728 (829)
Q Consensus 682 ~~~------------~~~~~~~--~~~---~~------------~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~----~~ 728 (829)
..+ ...+..+ ++. .. .--.|..|+.|..|.+|.- +....|+.+. -+
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm-netKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM-NETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe-ccccceeehhhhcccC
Confidence 111 0111110 000 00 0013455566666777763 3445687653 22
Q ss_pred ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 729 PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.+..+. +..+.|...+.|+.|.+||....
T Consensus 252 nVssvlfh------------p~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 252 NVSSVLFH------------PHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred CcceEEec------------CccceeEecCCCccEEEEecccc
Confidence 33222222 22688999999999999999865
No 266
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=1.5e-06 Score=94.46 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.+++|...+.|.++..|++...+.+-.|.. ..++.++.+.+ |+.+++.|+-|+.+..|+..+.++.--++.. .+..+
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITA 456 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITA 456 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEEec-CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhhee
Confidence 578899999999999999998888876654 44556677765 5578999999999999999888876545665 45566
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------CCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
.++.++++..++|+.+|..+.|+...-++.-..+. +..+.+.-+...+.+.|+|.+.|..|.+||..+ -
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~ 534 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--K 534 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--h
Confidence 77888899999999999999999877666543332 122333333333346899999999999999855 3
Q ss_pred eEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 635 HTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 635 ~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+++-+++.. ........+..++..|++++.|..||.|+
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 344444321 12223445666899999999999999998
No 267
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=98.63 E-value=3.8e-08 Score=75.94 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=52.0
Q ss_pred HHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHH
Q 003331 292 QVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 292 ~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l 350 (829)
+.++++|+++++. .+++++++||++|+|||.++++...+ .++...++++||+..|+++|
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4678889999985 67999999999999999999998765 47888999999999999875
No 268
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=2e-06 Score=86.41 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=104.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcC---CCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL---TGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~---tG~~~w~~~~~~~~ 560 (829)
-.+.|..|+.|.+|..||+.+|++.-.+..++.-+.+..+.+ ....+..|++|+.+...|.+ .-...|++...-+.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 356788899999999999999999887765554444555544 34578899999999999977 44467887654332
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccC
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~ 631 (829)
...--. ....+++++.||.||-+|+++ |+++|..+.+...++..++.. ..+.+..++.++.+-.|+...
T Consensus 335 v~w~~~--se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 335 VAWDPH--SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEecCC--CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 221111 346788899999999999875 699999998877666665543 235566677788888887664
No 269
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=4.1e-06 Score=91.76 Aligned_cols=236 Identities=11% Similarity=0.080 Sum_probs=154.5
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEE
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVY 594 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w 594 (829)
....++.++|..|++.+.|+.|..|+..+- +.--+....+....+... ..+.+.+++.++.+..|...+++ ++-
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~ 93 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA 93 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceee
Confidence 446788888889999999999999985443 111122212222222222 33678899999999888876654 344
Q ss_pred eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 595 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
++.. .....+++.++..+.+|+.|-.|-+++..+ +.................+.+.++.+.+.+.+|.|++|+ +
T Consensus 94 Rftl---p~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 94 RFTL---PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeec---cceEEEEecCCcEEEeecCceeEEEEeccc--cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 4433 233455676677889999998899999887 444444433333345667778889999999999999999 8
Q ss_pred CCCEEEEeecC----CceeecCccc---ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003331 674 SGSIIWRCRTG----GPIFAGPCTS---FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 674 ~g~~~w~~~~~----~~~~~~~~~~---~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+|.+......- ..+.+.++.. .-.++.+.+...++.|..|+.++......+...... +.+.+ -.
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s--s~~~~-------~~ 239 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS--SKFSD-------LQ 239 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc--cceEE-------EE
Confidence 88776544321 1111222211 123577888888999999999988887666533221 11111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeec
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..+.|.+|++++.+|.|.+||.++
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEeccc
Confidence 234489999999999999999985
No 270
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=98.60 E-value=3.5e-07 Score=101.91 Aligned_cols=177 Identities=24% Similarity=0.288 Sum_probs=118.4
Q ss_pred ccccCCcEEEEecCCCC----CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEc
Q 003331 83 GLPISNCDIVLVESDTV----KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158 (829)
Q Consensus 83 G~p~~~~~~~i~d~~~~----~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~ 158 (829)
|.-.+.+++.|+.++.. .++.||||+.+..-+.+|++... + +..+.++..-... ...+..|-||||+|+..
T Consensus 1156 G~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d---~-~~~~~fn~rl~~g-~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGD---E-LRSNHFNARLSSG-DLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred CcccccceeEEeCCccccccccCCcceEEeccccccccccccCc---h-hhhhhhhhhcccc-ccccccceeeeeeeeee
Confidence 66678899999998873 45679999999988888876411 1 2222221110000 11256899999999863
Q ss_pred ------cC----CcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHH
Q 003331 159 ------QS----GDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 227 (829)
Q Consensus 159 ------~~----G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (829)
.+ ..||++|-.++.+.++|.|.+|.+||+.+.. ||.|..|+|+-... .++..++...+ +....
T Consensus 1231 ~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq-~~~~~ 1304 (1363)
T KOG3628|consen 1231 RTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQ-QELAD 1304 (1363)
T ss_pred eeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCc-hhHhh
Confidence 22 3489999999999999999999999998876 99999999986654 45556666552 22222
Q ss_pred HHHHHHHHHHhcCCCCCcCCeEEEeCc--ccCCCCCCcchhhhcccc
Q 003331 228 FLSSIKSWVSSKLPLAMIPNRFVFMDS--LPMTSSGKVDYASLSAST 272 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~~~~p~~~~~~~~--lP~t~~GKi~r~~l~~~~ 272 (829)
+...|...+-+. .+.+-+.+.+++. +|+++.|.-+|..+++.+
T Consensus 1305 LvPlIv~~vL~e--H~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w 1349 (1363)
T KOG3628|consen 1305 LVPLIVNVVLEE--HYIILDVVAFVDKGVFPRNSRGEKQRAHILDSW 1349 (1363)
T ss_pred hhHHHHHHHHhh--cceEEEEEEEecCCccccCCchhhHHHHHHHHH
Confidence 223333222221 2345555556654 999999988888877654
No 271
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.59 E-value=0.00012 Score=77.54 Aligned_cols=267 Identities=12% Similarity=0.102 Sum_probs=145.2
Q ss_pred EEEEec-CCCcEEEEECCC-Cc--EEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcC-CCcEE--EEEecCCe
Q 003331 488 YLFVGS-HSHKFICADAKR-SS--VLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDIY--WTFQTCGE 559 (829)
Q Consensus 488 ~l~igs-~~g~l~~~d~~t-g~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~-tG~~~--w~~~~~~~ 559 (829)
++|++. .++.|..||..+ |+ .+-.+...+. .....++++++.+|+++. ++.|+.|+.. +|++. -.....+.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~-~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQ-VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCC-CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 467774 578899999864 54 3333333222 234567888889999865 6778888765 56542 12222222
Q ss_pred eeeeeeeecCCCEEEEecc-CCeEEEEEcCC-Ce---EEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YR---CVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~ 633 (829)
.+...++++++.+|++++ ++.+..||..+ |. .+......... ....++++++.+|++.. ++.|..||+++ .
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~ 158 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSD-D 158 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECC-C
Confidence 233455667788888765 67888898753 32 22221111111 22345666778888775 47899999875 2
Q ss_pred ceEE------EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-C--CCCEEEEeecCC--ceeecC----ccccc-
Q 003331 634 FHTL------WLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIWRCRTGG--PIFAGP----CTSFA- 696 (829)
Q Consensus 634 g~~~------w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~--~g~~~w~~~~~~--~~~~~~----~~~~~- 696 (829)
|... .....+ .......+.+++..+|+.+. ++.|.+|+ . +|+......... .....+ .+...
T Consensus 159 g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 111111 11234566778889999876 78898888 4 454422211110 000000 01111
Q ss_pred CCCeEEEEee-CCeEEEEeCCC--CcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003331 697 LPSQVLICSR-NGSIYSFEQES--GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 697 ~~~~i~~~t~-~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
.+..+|++.. ++.|..|+.++ +.+...-..... ..|. . .....++.++|++.. ++.|.+|+.+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~---~-----~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPR---G-----FNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCC---c-----eEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2446888754 57788887643 232221111111 0010 0 011234788888775 7788888764
No 272
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=4.6e-06 Score=81.11 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-ccc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-FGS 605 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-~~~ 605 (829)
..+.++..+|.+.+||..||+.+-.+..........-+. +....|+.++.||.|.+||+.+....-++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 458888889999999999999888776544322222222 24577899999999999999875543333222211 122
Q ss_pred ceeec--CCCEEEEEec----CCeEEEEEccCCCceE-EEe-eccCCcceeeeeeeec-CCEEEEEeeCCeEEEEcCCCC
Q 003331 606 PAIDE--VHDVLYVAST----SGRLTAISVKALPFHT-LWL-HELEVPAFASLCITSA-NRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 606 ~~~~~--~~~~l~v~t~----~g~l~~~~~~~~~g~~-~w~-~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d~~g~ 676 (829)
.+++. +++.+..|+. +-.|+.||... -+. +-. .+.+........+.+. .+.+..|+.||-+.+||.++.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRS--EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEecc--ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 23333 3445555553 34688888775 111 111 1122223344455554 567888999999999992221
Q ss_pred -----EEEEeecCCceeecCcccccCCC--eEEEEeeCCeEEEEeCCCCcEE
Q 003331 677 -----IIWRCRTGGPIFAGPCTSFALPS--QVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 677 -----~~w~~~~~~~~~~~~~~~~~~~~--~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
++..+..+..+... ....++ .||+-|+..+.+.|+.+.|...
T Consensus 199 ~EeDaL~~viN~~sSI~~i---gw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLI---GWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred cchhhHHHhhcccceeeee---eeecCCcceEEEEEccCceeEEEccCCChh
Confidence 12222222222222 122233 7999999999999999888754
No 273
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.57 E-value=1.2e-06 Score=85.57 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=148.2
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 609 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~ 609 (829)
.++.|+.||.|..||+.+-.+.|++..+.......++.. +.+++.+.|..|..|... |.++.++...+.....-...
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeecccccccccccc
Confidence 467888999999999999999999998875554445543 445555567788777644 33444443332221111111
Q ss_pred cCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCEEEEeecCCc-
Q 003331 610 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SSGSIIWRCRTGGP- 686 (829)
Q Consensus 610 ~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~- 686 (829)
.+.+++ |..-.|-+||... -.++.++..+.+...+..+.+... .+..+..+++|+.|| .++.++.+....-.
T Consensus 158 --~~~~Fa-TcGe~i~IWD~~R--~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT 232 (433)
T KOG0268|consen 158 --KNSVFA-TCGEQIDIWDEQR--DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT 232 (433)
T ss_pred --cccccc-ccCceeeeccccc--CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc
Confidence 122333 3334578888764 345555555555445555544444 444555899999999 88887765543211
Q ss_pred --eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE-EEEEe-cCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 687 --IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL-LWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 687 --~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~-~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
+.-.| ..-+..+++.|..+|.+|...-+. +-.+. ..+.+ .+ ....+.|..+..|+.|.+
T Consensus 233 N~IswnP-----eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV-----~d-------VdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 233 NTICWNP-----EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV-----MD-------VDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cceecCc-----cccceeeccccccceehhhhhhcccchhhcccceeE-----EE-------eccCCCcchhccccccce
Confidence 11111 122455678899999999654221 11111 11111 11 112344888999999999
Q ss_pred EEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeCCeEEEEecc
Q 003331 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 763 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
|.+|..+.+.+....++.- . -.++.-.. .+..+|+.|+.|+.+..|..+
T Consensus 296 IRIf~~~~~~SRdiYhtkR-M----------q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKR-M----------QHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEeecCCCcchhhhhHhh-h----------heeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999988764433222110 0 01111111 134688889999999999764
No 274
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.7e-05 Score=72.20 Aligned_cols=226 Identities=14% Similarity=0.145 Sum_probs=128.2
Q ss_pred CeEEEEecCCCcEEEEECCC---------Cc-EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC------CCc
Q 003331 486 DIYLFVGSHSHKFICADAKR---------SS-VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL------TGD 549 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---------g~-~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~------tG~ 549 (829)
..++++|+..|.|..+.+++ |+ .+-.+..++.......+.++ .+.++. ||.||.|.-. .-+
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEESLATK 98 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhhhccch
Confidence 45688888888887776543 11 11222333333334445433 455554 7999988632 234
Q ss_pred EEEEEecCCee-------eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 550 IYWTFQTCGEV-------KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 550 ~~w~~~~~~~~-------~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
.+|+...+-.. ..+..+++..+-|+++..|+.+|++|.++|++...+..+....-+.+.....+.|+.|+.||
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence 56765433211 12233455667777777899999999999999998887766655555545567899999999
Q ss_pred eEEEEEccCCCceEEEeeccCC------cceee--eeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcc
Q 003331 623 RLTAISVKALPFHTLWLHELEV------PAFAS--LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCT 693 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~------~~~~s--~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~ 693 (829)
.+..||.++ ++.....+... |.... .++..+.+-+.+|. .-.+..|+ ...+..-.++...++.-.
T Consensus 179 tvRvWd~kt--~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v--- 252 (325)
T KOG0649|consen 179 TVRVWDTKT--QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLV--- 252 (325)
T ss_pred cEEEEeccc--cceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEe---
Confidence 999999888 77655543321 11122 33443444444443 22344444 332222222222222111
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 694 SFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
.+ .++.|.++.....+..|.. +|.+.-
T Consensus 253 ~F-~~d~vl~~G~g~~v~~~~l-~Gvl~a 279 (325)
T KOG0649|consen 253 DF-VDDCVLIGGEGNHVQSYTL-NGVLQA 279 (325)
T ss_pred ee-ecceEEEeccccceeeeee-ccEEEE
Confidence 12 2445666665556766653 355543
No 275
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=0.00028 Score=66.81 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=151.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE--EeeccCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~ 600 (829)
|..++.++.|..|..|+...+.- |+..+ +....-+.+..+.+.++.++|.|..+..|....++.. -.+..+.
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 34577888899999999765443 44321 2222334456667788999999999999987766543 3333344
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCce---EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH---TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~---~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
+-.-+...+.+++.|...+.+..+.+|..+. +. ..-..+.+....-.....+..+.++.+++|.+|..|. .++.
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~de--ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDE--DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecC--CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 4455666777788899999999999998773 22 2222222222222334455678899999999999988 4222
Q ss_pred EEEEe--ecCC---ceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003331 677 IIWRC--RTGG---PIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 677 ~~w~~--~~~~---~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
-|.. ...+ .+++.. +.. +.++..++.|+.+..|-..++-. ......++..+..
T Consensus 184 -dW~c~~tl~g~~~TVW~~~---F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~-------------- 242 (312)
T KOG0645|consen 184 -DWECVQTLDGHENTVWSLA---FDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD-------------- 242 (312)
T ss_pred -CeeEEEEecCccceEEEEE---ecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec--------------
Confidence 1322 2221 223222 333 33677777888777776432211 1111122221211
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccce---EECCEEEEeeeCCeEEEEecc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPV---MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~---~~~~~l~vg~~~g~l~~~d~~ 822 (829)
++.|+.+..|+.|.+|....+.... ..+++.+. .-++.-+.+.. ...+.|..|+.||.+..|.++
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p-------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEP-------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCc-------hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 5678888889989888665331110 01111110 11111111111 235789999999999988764
No 276
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.53 E-value=8.9e-06 Score=82.17 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=160.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcE----EEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec--CC
Q 003331 486 DIYLFVGSHSHKFICADAKRSSV----LWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CG 558 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~----~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~ 558 (829)
...|.+|+..|.|-.||..+.+. ...+..+...+++..+.+ +...||..++||.|.+-|.+++...-.+.. ..
T Consensus 200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 36788899999999999853221 112333333344445544 335799999999999999887754222222 33
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
...+..-+..++..++++++-|.+..||..+++- .|....+..-+.+..+.+-. ..+..++.+++..+||.....++.
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 3344444555678888988888899999887654 66665554444444443322 456667789999999977533332
Q ss_pred ---EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C---C-----CCEEEEeecCCceeecCccc-cc-CCCeEE
Q 003331 637 ---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S---S-----GSIIWRCRTGGPIFAGPCTS-FA-LPSQVL 702 (829)
Q Consensus 637 ---~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~---~-----g~~~w~~~~~~~~~~~~~~~-~~-~~~~i~ 702 (829)
+..+. +.....+..+++.++.++..+.|..|.+|| . . +.+......+. .-+++-. .+ ....|+
T Consensus 360 sp~lst~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R--wlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 360 SPFLSTLP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR--WLTPFKAAWDPDYNLIV 436 (498)
T ss_pred Ccceeccc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc--cccchhheeCCCccEEE
Confidence 22222 233346677888899988888899999988 3 1 11111111111 1111100 11 245788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-EEEEEccCCcEEEEEe
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRV 768 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~ 768 (829)
+|.+-..|-.||...|+.+-++..+..... +.+. .+.+.+. ++.-++..|.||+|--
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI-~~vn--------~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTI-PSVN--------EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCcccccc-ccce--------eecccccceeccCCccceEEEEec
Confidence 888888899999888887655432222111 1111 1122244 5555666788888743
No 277
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.4e-05 Score=72.54 Aligned_cols=188 Identities=15% Similarity=0.164 Sum_probs=107.5
Q ss_pred CeEEEEecCCCcEEEEECCC------CcEEEEEEcCCce-------eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 486 DIYLFVGSHSHKFICADAKR------SSVLWEIKLEGRI-------ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t------g~~~w~~~~~~~~-------~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
+..+..+. ||.|+.|.-.. -|.+|+...+-.. ..+..+.+..+-++.+..|+.+|++|+++|++..
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 44555554 48888886432 3556775544221 2233444444455555579999999999999999
Q ss_pred EEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc------cccc--ceeecCCCEEEEEecCCeE
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGS--PAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~--~~~~~~~~~l~v~t~~g~l 624 (829)
.+..+....-+.+.-...+.|+.|+.||.++.||.+|++.+-.+..... -++. .+++.+.+.+++|.. -.+
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~l 229 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKL 229 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-Cce
Confidence 9988776665555545678899999999999999999998776543211 1111 233333455555543 235
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWR 680 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~ 680 (829)
..|++.. -+..-.+....+. -.+...++.+.++.....+..|.-+|.+.-.
T Consensus 230 slwhLrs--se~t~vfpipa~v---~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 230 SLWHLRS--SESTCVFPIPARV---HLVDFVDDCVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred eEEeccC--CCceEEEecccce---eEeeeecceEEEeccccceeeeeeccEEEEe
Confidence 5565554 2222222221111 0122245566666544445444444544333
No 278
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.1e-05 Score=75.22 Aligned_cols=277 Identities=14% Similarity=0.077 Sum_probs=154.3
Q ss_pred cccccceEEeeCCCeEEEEecC-------CCcEEEEECCCCcEE---EEEEcCCceeeceEEe-eCCcEEEEEEeCCEEE
Q 003331 473 CVDASPLVVLKDSDIYLFVGSH-------SHKFICADAKRSSVL---WEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIY 541 (829)
Q Consensus 473 ~~~~sp~v~~~d~~~~l~igs~-------~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~ 541 (829)
.+..||.+ .++|.+++. +|+|+.++...++-+ -.+...+... ..+.+ ...+.+++++.||.|.
T Consensus 13 svqfSPf~-----~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lf-dV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 13 SVQFSPFV-----ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLF-DVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred eeEecccc-----cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeeccccee-EeeecCCCcceEEEEecCceEE
Confidence 34556665 445554442 468888887543322 2344444332 23333 2345788888999999
Q ss_pred EEEcCC-CcEEEEEecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecC-CCEEEEE
Q 003331 542 FLDYLT-GDIYWTFQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV-HDVLYVA 618 (829)
Q Consensus 542 ~~d~~t-G~~~w~~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~l~v~ 618 (829)
.||..- -+++..++-+ .++.+.---...+..++++|+|++|..||+.-++-+.++..+...+-.....+. .+.+..+
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 999321 2233333222 233322111113456778899999999999888888877665544433333332 3455566
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeee-ecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCC-ceeecCccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCIT-SANRHVICCLVDGHVVALD-SSG-SIIWRCRTGG-PIFAGPCTS 694 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~-~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~-~~~~~~~~~ 694 (829)
+.|+.+..||.+. +|+..- +..+.....+.... .+...++.|..|+.|++|| .+- .++......+ .+....+.+
T Consensus 167 Sgd~~l~lwdvr~-~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 167 SGDGTLRLWDVRS-PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred cCCceEEEEEecC-CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 7789999999875 366554 33333111222222 2456778888999999999 532 3444442222 111111111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
. ....+..+++|=++..||...+. .+-+++.+..+....-. .....+.++....|+.+++|++
T Consensus 245 h-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw----------s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 H-HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW----------SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred c-hhhHhhhccccceEEecccccchhhhhhhhccceEEecccc----------ccccCceeeecccccceeeecc
Confidence 1 12245567788889999877432 22233333322211100 0113788888899999999974
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=0.00016 Score=72.76 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=123.8
Q ss_pred CeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--C--Cee
Q 003331 486 DIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--C--GEV 560 (829)
Q Consensus 486 ~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~--~~~ 560 (829)
++.+|+.. ..+.|+.+|+.+++.. .+..+.. ....+...++.+|++... .+..+|..+|+....... . ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~--~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGP--NGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSE--EEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCC--ceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccC
Confidence 55555555 5788999999887654 3444542 245555345788888754 466779999977654443 1 223
Q ss_pred eeeeeeecCCCEEEEeccC---------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEcc
Q 003331 561 KCQPVVDAPRQLIWCGSHD---------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVK 630 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~---------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~ 630 (829)
...-+..+.+|.+|+++.. |.++.++.. ++....... -.....++++.+++.+|+. +..+.|+.++++
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccceeEEEecc
Confidence 3333333456779997542 569999988 665443321 2223456677777888865 557889999987
Q ss_pred CCCce----EEEeeccCCcc-eeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003331 631 ALPFH----TLWLHELEVPA-FASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 631 ~~~g~----~~w~~~~~~~~-~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
...+. ..+ ....... .........++++|++.. .+.|.++|.+|+++-.+..+....+..+......+.||+.
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 165 ADGGELSNRRVF-IDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTTCCEEEEEEE-EE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ccccceeeeeeE-EEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 53331 112 1222211 122223335678898865 6889999966998877776633222221111234567776
Q ss_pred ee
Q 003331 705 SR 706 (829)
Q Consensus 705 t~ 706 (829)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 53
No 280
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=3.3e-05 Score=80.36 Aligned_cols=234 Identities=14% Similarity=0.148 Sum_probs=139.4
Q ss_pred ceEEeeCCcEEE-EEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 521 SAAVLADFSQVV-VGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 521 ~~~~~~~~~~v~-vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.+-+++||.+++ +|.|.-.|.+||+.+-.++..-.+...+....+++++ ...++. ..|..| -+..+-|.. .....
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L-~~DR~I-efHak~G~h-y~~RI 132 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL-QNDRTI-EFHAKYGRH-YRTRI 132 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe-ecCcee-eehhhcCee-eeeec
Confidence 455778888766 5778889999999888887766666655544444433 333332 233322 222233321 11111
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+. .-..+++..-.--+|++.....||.+|++. |..+--+.........+.+....+.+.+|+.+|.+-+|| .+...
T Consensus 133 P~-~GRDm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 133 PK-FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred Cc-CCccccccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 10 011222222223466666677799999998 887766666555556666777789999999999999999 66665
Q ss_pred EEEeecCCceeecC---------cccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc--ccccccccccccc
Q 003331 678 IWRCRTGGPIFAGP---------CTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGDPITA--SAYIDEHLQLKLE 745 (829)
Q Consensus 678 ~w~~~~~~~~~~~~---------~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~ 745 (829)
.-.......+-+.| .+.+..+| .+-+|+.+|.++.||..+.+++...++...... ..+.+.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~------- 282 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT------- 282 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-------
Confidence 55544333221111 12233334 578999999999999999888766554433211 111111
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecC
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++...+......+.+||..+|
T Consensus 283 ----~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 283 ----DQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ----CCCceEEecchHHhhhcccccC
Confidence 1334445555566888998877
No 281
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.43 E-value=0.00044 Score=69.62 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=148.9
Q ss_pred eCCCeEEEEec----------CCCcEEEEECCCCcEEEEEEcCCc--e-----eeceEEeeCCcEEEEEEe--CCEEEEE
Q 003331 483 KDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEGR--I-----ECSAAVLADFSQVVVGCY--KGKIYFL 543 (829)
Q Consensus 483 ~d~~~~l~igs----------~~g~l~~~d~~tg~~~w~~~~~~~--~-----~~~~~~~~~~~~v~vg~~--dg~l~~~ 543 (829)
+.++..+|+.+ ....|..||.+|-++.++..++.. . .....++.+++.+|+-.. -..|-.+
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 34566777643 224688999999999999887753 2 123467788888888643 4579999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-CCeEEEeecc-----CCcccccceeecCCCEEEE
Q 003331 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPC-----GGSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~-----~~~~~~~~~~~~~~~~l~v 617 (829)
|++.++++-.+.+++-...-|. .+..++.-+.||.+..+.+. .|+...+... ...++..+.+...++.+|+
T Consensus 124 Dl~~~kvv~ei~~PGC~~iyP~---~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWLIYPS---GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp ETTTTEEEEEEEGTSEEEEEEE---ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred ECCCCceeeeecCCCEEEEEec---CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE
Confidence 9999999999888775443332 23456666778888777665 6777633211 2345566666666778888
Q ss_pred EecCCeEEEEEccCCCceE--EEeeccC-----C---cceeeeeeeecCCEEEEEeeCC----------eEEEEc-CCCC
Q 003331 618 ASTSGRLTAISVKALPFHT--LWLHELE-----V---PAFASLCITSANRHVICCLVDG----------HVVALD-SSGS 676 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~--~w~~~~~-----~---~~~~s~~~~~~~~~l~~~~~~g----------~i~~~d-~~g~ 676 (829)
.|.+|.++..+.....-+. .|..-.. . ....-.++....+++|+--..| .|.++| .+++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 9999999999987532222 2322110 0 0112234555677888764322 478888 8888
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEe
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~ 725 (829)
.+-+.+...++.+.. +..+..-.+|..+ .++.|+.+|..||+++.+.+
T Consensus 281 rv~Ri~l~~~~~Si~-Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 281 RVARIPLEHPIDSIA-VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEEESEEE-EESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEeCCCccceEE-EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 887777665554433 2233333566554 46889999999999987765
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.40 E-value=2e-05 Score=83.12 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=151.2
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeecc
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPC 598 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~ 598 (829)
...++.+||..++++. +..++.||..+|..+.+...+.......+++.++..+..|+.|..+..|+.+- |.+.+. .
T Consensus 16 ~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS--H 92 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS--H 92 (1081)
T ss_pred heeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec--c
Confidence 3567888998888876 66799999999999998887777666667777777888889999999998654 333322 2
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSII 678 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~ 678 (829)
+. .+..+.+.+-...+...+.+ ..-.|.++. +-+-++... ....+.....++.++.+|-.+|+|..-|.+|+..
T Consensus 93 ~D-~IQCMsFNP~~h~LasCsLs-dFglWS~~q---K~V~K~kss-~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 93 ND-AIQCMSFNPITHQLASCSLS-DFGLWSPEQ---KSVSKHKSS-SRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred CC-eeeEeecCchHHHhhhcchh-hccccChhh---hhHHhhhhh-eeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 11 11111111111222222211 122233222 101111110 1112334445677888888899998888777765
Q ss_pred EEeec----CCceeecCcccc---cCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCccccccccccccccccccccCC
Q 003331 679 WRCRT----GGPIFAGPCTSF---ALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 679 w~~~~----~~~~~~~~~~~~---~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
-..+. ..++++..+.+. ..++.+-+...+.++..+.. +|+.+-+-. .+-..... +...+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci------------sYf~N 233 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI------------SYFTN 233 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh------------eeccC
Confidence 55543 234554433322 23455666677777776664 466654221 11111111 12334
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceE-ECCEEEEeeeCCeEEEEeccccc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+.++.+|..++.+.+|..+.= .+.+... ..-+++-.+. .+..+.+||.||.+-|||+...+
T Consensus 234 GEy~LiGGsdk~L~~fTR~Gv--------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDGV--------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred CcEEEEccCCCceEEEeecCe--------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 889999999999998854421 1111110 0011111111 24578889999999999986544
No 283
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=4.8e-05 Score=79.17 Aligned_cols=268 Identities=13% Similarity=0.120 Sum_probs=158.5
Q ss_pred eeCCCeEEE-EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 482 LKDSDIYLF-VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 482 ~~d~~~~l~-igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
+++++.+++ .|+.--.|.+||...-.+.....+...++.-.++++|-..++.-..|..|-+.. .-|.- .+...+..-
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~h-y~~RIP~~G 136 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGRH-YRTRIPKFG 136 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCee-eeeecCcCC
Confidence 334555555 466677899999987766666555555444445556655555555566554433 33432 112222111
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.. ..+....-.+|++.....||.++++.|..+-.+.........+-+...++.|.+||.+|.+-.||+.+ ....-..
T Consensus 137 RD-m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l 213 (703)
T KOG2321|consen 137 RD-MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD--KSRVGTL 213 (703)
T ss_pred cc-ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh--hhhheee
Confidence 11 11111122366666666899999999999888877655555556666678999999999999999886 3333333
Q ss_pred ccCCc-----------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccCCCeEEEEee
Q 003331 641 ELEVP-----------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 641 ~~~~~-----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~ 706 (829)
..... ...+..+..++=.+.+|+..|.++.|| .+.+++.....+ -++........ .++...+...
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D 292 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQNKVVSMD 292 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-CCCceEEecc
Confidence 32211 123344444455788999999999999 776665443322 23333322222 2234455555
Q ss_pred CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 707 NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
...+..||..+|+..-.......+.-.- ..+..|.++++..++.+..|=
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C------------~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFC------------FVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCcee------------eecCCceEEEecCCCcceeEE
Confidence 6678889999998765444333221111 123378888888888776553
No 284
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.38 E-value=6.3e-05 Score=80.17 Aligned_cols=320 Identities=12% Similarity=0.099 Sum_probs=160.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE----cCCc-----------ee---------eceEEeeCCcEEEEEEeCCEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK----LEGR-----------IE---------CSAAVLADFSQVVVGCYKGKI 540 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~----~~~~-----------~~---------~~~~~~~~~~~v~vg~~dg~l 540 (829)
....|++|..+|.|..||+.|-...-+++ ++.. .+ ....+......+.+--.|..|
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 56789999999999999988754433221 1100 00 122233233345455568899
Q ss_pred EEEEcCC----CcE---------EEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCC---eEEEeeccC----
Q 003331 541 YFLDYLT----GDI---------YWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPCG---- 599 (829)
Q Consensus 541 ~~~d~~t----G~~---------~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~---- 599 (829)
|.||..+ |+. +|..+.-. .+...+.-.-..+-+.+.+.|++|+.||.+.+ ....+-...
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ 428 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLS 428 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhh
Confidence 9999876 332 34433211 22221111112355777888999999998752 222211000
Q ss_pred ------------------------------CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee
Q 003331 600 ------------------------------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 600 ------------------------------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
..-+...++++++..+..|...|+|.++++.. -+..-..+.+......
T Consensus 429 ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 429 KIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILC 506 (1080)
T ss_pred cCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEE
Confidence 01123445677677788888888999998775 3332233333222211
Q ss_pred eeee---ecCCEEEEEeeCCeEEEEc--CCCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEE-EEeCCCCcEEE
Q 003331 650 LCIT---SANRHVICCLVDGHVVALD--SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIY-SFEQESGNLLW 722 (829)
Q Consensus 650 ~~~~---~~~~~l~~~~~~g~i~~~d--~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~-~~d~~tG~~~w 722 (829)
..++ ...+.+..++.+.-|.+|| ++-.++-+... ...+.+..+...+.+-.++.+..|..++ ..+.+.+.-.-
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 1111 1234556667777788888 33333322222 1122222222222222344443343322 11111111110
Q ss_pred EEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE
Q 003331 723 EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM 802 (829)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 802 (829)
......... ..+++.....+...++.+++.|..|.+||.++++ ....++-.-.--..++.
T Consensus 587 f~r~t~t~~-------ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-------------q~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 587 FPRHTQTLS-------KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-------------QVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccccccccc-------cceEEEeeeCCCcceEEEEecccceEEEeccccc-------------eeeeecccccCCCceEE
Confidence 111111111 1111222233447889999999999999999873 22223221111112221
Q ss_pred ---E--CCEEEEeeeCCeEEEEecccccc
Q 003331 803 ---I--GGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 803 ---~--~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+ +.+|...|.|..|-++|..+|+.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchh
Confidence 2 34555567799999999998874
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.37 E-value=0.00033 Score=70.50 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=112.9
Q ss_pred ceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-
Q 003331 521 SAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC- 598 (829)
Q Consensus 521 ~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~- 598 (829)
.+++....+.+|+ ....+.|+.+|..+++..- +..+. . ...++...++.+|++... .+..+|+.+|+.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~-~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-P-NGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-E-EEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-C-ceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 3455543344444 4457899999988876642 34444 2 223344245888888765 466669999976554433
Q ss_pred -C---CcccccceeecCCCEEEEEecC---------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE-ee
Q 003331 599 -G---GSIFGSPAIDEVHDVLYVASTS---------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC-LV 664 (829)
Q Consensus 599 -~---~~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~-~~ 664 (829)
. .......++++ ++.+|++... |.++.++.+ ++...... ........++.++++.+|+. +.
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC---CeEEEEec-CcccccceEECCcchheeecccc
Confidence 1 22333455665 5679988643 568888877 23221111 11112456677788888865 45
Q ss_pred CCeEEEEc-C-CCC-EEEE---eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecC
Q 003331 665 DGHVVALD-S-SGS-IIWR---CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 665 ~g~i~~~d-~-~g~-~~w~---~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
.+.|+.++ . .+. +... .......-...-+..+.+|+||++.. .+.|+++|++ |+++-.+..+
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 67888888 3 343 2111 11111100011133566889999865 6789999987 9998777766
No 286
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.36 E-value=0.0011 Score=70.15 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=147.4
Q ss_pred EEEEEEeC----CEEEEEEc--CCCcEEEEEec-CCeeeeeeeeecCCCEEEEecc----CCeEEEEEcCC--CeEEEe-
Q 003331 530 QVVVGCYK----GKIYFLDY--LTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSH----DHNLYALDFRN--YRCVYK- 595 (829)
Q Consensus 530 ~v~vg~~d----g~l~~~d~--~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~----~g~l~~~d~~t--g~~~w~- 595 (829)
.+|+|++. ++|+.|+. ++|++...... .....+...++++++.||+... .+.|.+|+... |++...
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47899987 68877665 77776543221 1222233456677899999865 46776665543 655432
Q ss_pred -eccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEee-----cc--------CCcceeeeeeeecCCEEE
Q 003331 596 -LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH-----EL--------EVPAFASLCITSANRHVI 660 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~-----~~--------~~~~~~s~~~~~~~~~l~ 660 (829)
....+..-+...+++++..+|++.. +|.+..++++.. |...... .. ..+......+.++++.+|
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3323444455667777889999885 678888888753 5433221 10 112234556677788888
Q ss_pred EEee-CCeEEEEc-CC--CCEEEEeecCCceeecCc-cccc-CCCeEEEEee-CCeEEEEeCC--CCcEEEEEecCC---
Q 003331 661 CCLV-DGHVVALD-SS--GSIIWRCRTGGPIFAGPC-TSFA-LPSQVLICSR-NGSIYSFEQE--SGNLLWEYSVGD--- 728 (829)
Q Consensus 661 ~~~~-~g~i~~~d-~~--g~~~w~~~~~~~~~~~~~-~~~~-~~~~i~~~t~-~g~l~~~d~~--tG~~~w~~~~~~--- 728 (829)
+... ...|+.|+ .. +++.-......+.-+.|. +... .+..+|+.+. ++.|..++.. +|++........
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 8753 34677777 33 334321111101111111 1111 2356777754 5667777765 776544322111
Q ss_pred ccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECC
Q 003331 729 PITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGG 805 (829)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~ 805 (829)
...... .... -....++.++|+... ++.|.+|+.+.. .+. ..........+..-....+ .+.
T Consensus 240 ~~~~~~-~~~~-----i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~--------l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 240 GFTGEN-APAE-----IAISPDGRFLYVSNRGSNSISVFDLDPA-TGT--------LTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp TSCSSS-SEEE-----EEE-TTSSEEEEEECTTTEEEEEEECTT-TTT--------EEEEEEEEESSSSEEEEEE-TTSS
T ss_pred cccccC-Ccee-----EEEecCCCEEEEEeccCCEEEEEEEecC-CCc--------eEEEEEEeCCCCCccEEEEeCCCC
Confidence 100000 0000 012345888998875 446888887421 111 1223333333332223333 577
Q ss_pred EEEEeee-CCeEEEE--eccccccc
Q 003331 806 RVFVGCR-DDYIYCI--ALETQHLE 827 (829)
Q Consensus 806 ~l~vg~~-~g~l~~~--d~~tg~~~ 827 (829)
.||+++. ++.|.+| |.++|++.
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEE
Confidence 8999875 4566666 55688764
No 287
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00025 Score=77.59 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=125.2
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|.. |+..-..........++.++++++.++..+++ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 57777763 43322222233344578899998888776653 359999999997654322332 33467777777777
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..++... ++..+......+.+++++..+++.+. .| .||.++..+ ++..- ........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~-lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQR-VTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEE-EecCCCCc
Confidence 65 45554 4888888776543 33333334456778877777776554 23 466677654 43211 11122222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCC---eEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g---~l~~~d~~tG~~ 720 (829)
.++.++++++.+++.+..+ .|+.+| .+|+...-.. ... ...+.... .+..|++.+.++ .++.++. +|+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~-~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTR-DESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCC-ccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 3566777888887766544 588899 7776543222 111 12222222 233455555433 4777776 5666
Q ss_pred EEEEec
Q 003331 721 LWEYSV 726 (829)
Q Consensus 721 ~w~~~~ 726 (829)
......
T Consensus 407 ~~~l~~ 412 (427)
T PRK02889 407 KQRLSV 412 (427)
T ss_pred eEEeec
Confidence 655543
No 288
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.35 E-value=0.00014 Score=69.38 Aligned_cols=269 Identities=16% Similarity=0.111 Sum_probs=157.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE------EEEE------cCC--c-eeeceEEe-eCCcEEEEEEeCCEEEEEEcCCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL------WEIK------LEG--R-IECSAAVL-ADFSQVVVGCYKGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~------w~~~------~~~--~-~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG 548 (829)
.+.++..|..||.+..||++.-... -... .++ + .+.++... .|.+.+..++.|..|..||..|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 5778889999999999998754311 0000 001 1 12233322 35567777889999999999999
Q ss_pred cEEEEEecCCeeeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEE
Q 003331 549 DIYWTFQTCGEVKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLT 625 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~ 625 (829)
+..-.|..++.+++.... ....-.|.+|+.+-.|...|+++|..-.....+....-+.-..+..+ .++.|+.||.+.
T Consensus 135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 998888888877643221 11234566788888899999999988777665433222222333223 466788899999
Q ss_pred EEEccCCCceEEEeeccC---Cc----------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE--------EEeec
Q 003331 626 AISVKALPFHTLWLHELE---VP----------AFASLCITSANRHVICCLVDGHVVALD-SSGSII--------WRCRT 683 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~---~~----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~--------w~~~~ 683 (829)
.||+...+|-..-.-... .| .+...+...++..++.++.+..+..++ .+|+-- .....
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 999887555433211111 11 123345555666777777788888888 666421 11111
Q ss_pred CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 684 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 684 ~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
+..+... ....+-.+.+ -.+++++.++.-+|.++.....+.......+... .-...+.|..|+.+
T Consensus 295 ~~~~~~~---~~~s~vfv~~-p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-----------~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 295 SFAVHIQ---SMDSDVFVLF-PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-----------DFEQCFTGDMNGNI 359 (397)
T ss_pred cceEEEe---ecccceEEEE-ecCCeEEEEEccCceEEEeeecccceeeEEeecC-----------chhhhhccccCCcc
Confidence 1111100 1111112233 3458899999999988755554422221111111 13456788888888
Q ss_pred EEEEe
Q 003331 764 HILRV 768 (829)
Q Consensus 764 ~~~d~ 768 (829)
+.|-+
T Consensus 360 ~~w~p 364 (397)
T KOG4283|consen 360 YMWSP 364 (397)
T ss_pred ccccc
Confidence 88754
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.34 E-value=0.00055 Score=69.83 Aligned_cols=308 Identities=13% Similarity=0.090 Sum_probs=155.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-----EE--eCCEEEEEEcCCCcEEEEEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-----GC--YKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-----g~--~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
.++.|...+.|. ++.+++++|+.+.- ..+-.+...+-++++|..|.. |+ ..+.||.++.++|+.+...-.+
T Consensus 49 ~GD~IiFt~~Dd-lWe~slk~g~~~ri-tS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG 126 (668)
T COG4946 49 YGDRIIFTCCDD-LWEYSLKDGKPLRI-TSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG 126 (668)
T ss_pred cCcEEEEEechH-HHHhhhccCCeeEE-ecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec
Confidence 345555555554 88899999987643 334445556677777765544 32 2356899998999876532222
Q ss_pred CeeeeeeeeecC-------------------------------------------CCEEEEeccCCeEEEEE---cCCCe
Q 003331 558 GEVKCQPVVDAP-------------------------------------------RQLIWCGSHDHNLYALD---FRNYR 591 (829)
Q Consensus 558 ~~~~~~~~~~~~-------------------------------------------~~~i~~gs~~g~l~~~d---~~tg~ 591 (829)
.......-+.++ ++.+++|-..-.|=-|. --|..
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrG 206 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRG 206 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccc
Confidence 111111111111 12222221100000010 01222
Q ss_pred EEEeeccCC----------cccccceeecCCCEEEEEec---CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE
Q 003331 592 CVYKLPCGG----------SIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 592 ~~w~~~~~~----------~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
.+|.-..++ ...++|++-. +++|+-+. -|++|..|++ |+-+-+...-.. ...-....++++
T Consensus 207 klWis~d~g~tFeK~vdl~~~vS~PmIV~--~RvYFlsD~eG~GnlYSvdld---GkDlrrHTnFtd-YY~R~~nsDGkr 280 (668)
T COG4946 207 KLWISSDGGKTFEKFVDLDGNVSSPMIVG--ERVYFLSDHEGVGNLYSVDLD---GKDLRRHTNFTD-YYPRNANSDGKR 280 (668)
T ss_pred eEEEEecCCcceeeeeecCCCcCCceEEc--ceEEEEecccCccceEEeccC---CchhhhcCCchh-ccccccCCCCcE
Confidence 345433222 2346666665 78877664 2678888877 443322211100 111223345667
Q ss_pred EEEEeeCCeEEEEcCCCCEEEEeecCC--------ceeecCcc----cccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 659 VICCLVDGHVVALDSSGSIIWRCRTGG--------PIFAGPCT----SFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~~w~~~~~~--------~~~~~~~~----~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
+++. ..|.|+.+|.+...+-+...+- +.+..|.- ....+|..++--..|..+..+...|-.+ +...
T Consensus 281 IvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~i-qv~~ 358 (668)
T COG4946 281 IVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSI-QVGK 358 (668)
T ss_pred EEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeE-EcCC
Confidence 7665 4688999993333333443332 22333221 0122344444434567888876655433 1111
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCC-cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECC
Q 003331 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG-SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGG 805 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 805 (829)
...+...-. ........+|+.|| .|-++|..++ +.....+--|++++-.+-.+|
T Consensus 359 ~~~VrY~r~------------~~~~e~~vigt~dgD~l~iyd~~~~-------------e~kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 359 KGGVRYRRI------------QVDPEGDVIGTNDGDKLGIYDKDGG-------------EVKRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred CCceEEEEE------------ccCCcceEEeccCCceEEEEecCCc-------------eEEEeeCCccceEEEEEcCCC
Confidence 122211111 11244678899998 7889998865 222222233445544444454
Q ss_pred -EEEEeeeCCeEEEEeccccccc
Q 003331 806 -RVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 806 -~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.+.++.....|..+|.++|+.+
T Consensus 414 K~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCee
Confidence 4777777888999999998853
No 290
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.33 E-value=5e-05 Score=72.90 Aligned_cols=268 Identities=12% Similarity=0.131 Sum_probs=157.4
Q ss_pred CCeEEEEecCCCcEEEEECCC------------Cc------EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC
Q 003331 485 SDIYLFVGSHSHKFICADAKR------------SS------VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL 546 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t------------g~------~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~ 546 (829)
++..+..|+.|..|..+|... |. ++.++--+..-+....+.+....+..|+.|+.|..||..
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 566777888899999998751 11 111111111123455677777788899999999999965
Q ss_pred CCcEEEEEec--CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC---cccccceeecCCCEEEE-Eec
Q 003331 547 TGDIYWTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYV-AST 620 (829)
Q Consensus 547 tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~l~v-~t~ 620 (829)
.-..+.-++. .....-+..+.+.+..+.+|+....++.||..|-++.-...... ..+...-++. .+.+|+ ++.
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSk 281 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASK 281 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEecc
Confidence 4333222211 22333444567788999999988899999999877654433211 1222233333 355555 677
Q ss_pred CCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC----ceeecCcc
Q 003331 621 SGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG----PIFAGPCT 693 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~----~~~~~~~~ 693 (829)
||.|..||--. ++.+-.+.. ++...-+..+..++++++....|..+..|. .+|+.+-.+...+ ..+....+
T Consensus 282 DG~IklwDGVS--~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 282 DGAIKLWDGVS--NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred CCcEEeecccc--HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence 99999998443 443333321 222234445666777888888888999999 8898887765332 12222223
Q ss_pred cccCCCeEEEEe-eCCeEEEEeCCCCcE--EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 694 SFALPSQVLICS-RNGSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 694 ~~~~~~~i~~~t-~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
....++.+.+.. ..+.+.+||..++.. +|.....+.+.... . .+.+.-...++.|-....|-
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~----------H--SP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV----------H--SPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE----------e--CCCCCceeeecccceeeeee
Confidence 333445555543 357899999998765 34444333321110 0 11144455666676666663
No 291
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.32 E-value=0.00012 Score=74.27 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=139.0
Q ss_pred cEEEEEEeCCEEEEEEcCCCcE----EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEE--EeeccCCc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDI----YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGGS 601 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~~ 601 (829)
+.|.+|...|.|-.||..+.+. ...+..++...+...+.+ +...||..|+||.+.+-|.+++... ........
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 4688888889999999842221 122333333333333332 4577999999999999998876432 22222344
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-C--CCCE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD-S--SGSI 677 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~--~g~~ 677 (829)
.+++.-+..+...++++..-|.+..||..+ .|+..|.......-..+..+.+- .-.+..++.+++...|| . .++.
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~-~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRT-DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeec-CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 555555665567788888777888999887 36667777666554455555443 34566777889998999 3 3332
Q ss_pred ---EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC----CCcEEEEEecCCcc--cccccccccccccccccc
Q 003331 678 ---IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE----SGNLLWEYSVGDPI--TASAYIDEHLQLKLESCL 748 (829)
Q Consensus 678 ---~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~----tG~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~ 748 (829)
+..+.....+.+.-+.+ .+++|...+.|..|..||.. .-.+.-...+.... ..+++- ....
T Consensus 360 sp~lst~~HrrsV~sAyFSP--s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK--------A~W~ 429 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSP--SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK--------AAWD 429 (498)
T ss_pred CcceecccccceeeeeEEcC--CCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh--------heeC
Confidence 22222222222211111 35678888899999999973 22222222222111 112211 1123
Q ss_pred CCCcEEEEEccCCcEEEEEeecC
Q 003331 749 SIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.+++++|.....|-+||...+
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCC
Confidence 35889999999888999988765
No 292
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.31 E-value=0.00054 Score=72.43 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=128.6
Q ss_pred eCCCeEEEEecC-CCcEEEEECC-CCcEEE--EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcC-CCcE---EEE
Q 003331 483 KDSDIYLFVGSH-SHKFICADAK-RSSVLW--EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDI---YWT 553 (829)
Q Consensus 483 ~d~~~~l~igs~-~g~l~~~d~~-tg~~~w--~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~-tG~~---~w~ 553 (829)
+.++..||+++. ++.|..|+.. +|+..- .....+. .....++++++.+|++++ ++.|..||.. +|.. +..
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 335678888864 6778888875 455321 1222222 234567778889999876 6788899875 3432 222
Q ss_pred EecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC-CeEEE------eeccCCcccccceeecCCCEEEEEec-CCeE
Q 003331 554 FQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YRCVY------KLPCGGSIFGSPAIDEVHDVLYVAST-SGRL 624 (829)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~~~w------~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l 624 (829)
....... ....+.++++.+|+.+. ++.|..||..+ |.+.- ....+ .-...+.+++++..+|+... ++.|
T Consensus 122 ~~~~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 122 IEGLEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred ccCCCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEE
Confidence 2111112 22345667778887654 47899999876 33221 11112 11233566777789999876 7889
Q ss_pred EEEEccCCCceE--EEeeccCC-----cce-eeeeeeecCCEEEEEee-CCeEEEEc--CCCCEE---EEeecCCceeec
Q 003331 625 TAISVKALPFHT--LWLHELEV-----PAF-ASLCITSANRHVICCLV-DGHVVALD--SSGSII---WRCRTGGPIFAG 690 (829)
Q Consensus 625 ~~~~~~~~~g~~--~w~~~~~~-----~~~-~s~~~~~~~~~l~~~~~-~g~i~~~d--~~g~~~---w~~~~~~~~~~~ 690 (829)
.+|+.+..+|+. .-...... +.. ....+.++++.+|++.. ++.|.+|+ .++..+ -....+....
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~-- 277 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPR-- 277 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCC--
Confidence 999987432433 22221111 111 12456678889999864 56788887 333221 1222211000
Q ss_pred Cccccc-CCCeEEEEee-CCeEEEEe--CCCCcE
Q 003331 691 PCTSFA-LPSQVLICSR-NGSIYSFE--QESGNL 720 (829)
Q Consensus 691 ~~~~~~-~~~~i~~~t~-~g~l~~~d--~~tG~~ 720 (829)
.+... .+..+|++.. ++.|..|+ ..+|.+
T Consensus 278 -~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 278 -GFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred -ceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 11122 3457887765 67777765 355655
No 293
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0004 Score=76.31 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=123.0
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+.... +..+.....++.+++|++.|+..++ +..||.+|..+|+..-.....+ ....+.+++++..|
T Consensus 183 ~l~~~d~dg~~~~~-lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRY-LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEE-EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 67788875544432 3334444567889999887776654 3579999999987643222232 33456777777666
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+++... +.........+.+++++..|++.+. +| .|+.+|.++ ++... ........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~-lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR-ISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE-eecCCCcc
Confidence 54 44443 59999998887643 3323334456777777777776663 22 689999775 43322 22222223
Q ss_pred eeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee-C-----CeEEEEeCCC
Q 003331 648 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-N-----GSIYSFEQES 717 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~-----g~l~~~d~~t 717 (829)
..+.++++++.+++...+ ..++.+| .++.. .....+.. ...+.... .+..|++.+. . ..|+.+|..+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~-~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFL-VEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCC-CCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCC
Confidence 456677888888776543 2577777 44432 22222211 12222211 1334554433 2 2588888765
Q ss_pred CcE
Q 003331 718 GNL 720 (829)
Q Consensus 718 G~~ 720 (829)
++.
T Consensus 414 ~~~ 416 (435)
T PRK05137 414 RNE 416 (435)
T ss_pred Cce
Confidence 544
No 294
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=4.3e-05 Score=71.44 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=131.9
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++.+++++.||.+..||..- .+++-.++-+.+-+.+.-.. .....++++++|++|..|+..-++-+.++..+.....
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 467788899999999999421 23333333343322233222 2334677889999999999988888888887777777
Q ss_pred eeeeecC-CCEEEEeccCCeEEEEEcCC-CeEEEeeccCC-cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAP-RQLIWCGSHDHNLYALDFRN-YRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~-~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
...+.+. .+.+...|.|+.+..||.+. |+.+- +..+. .+.+.---..+...++.+..|+.|+.||+.+- -.++..
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~e 229 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFE 229 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-ccccee
Confidence 7777654 45556678899999999764 54443 44443 22222222223567888888999999998861 112222
Q ss_pred eccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 640 HELEVPAFASLCITSA-NRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
...+.-..-....++. ...+..+++|-++..+| ..+ ..+-++..........-.+.-..+.+-..+.|+.++.|++
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2111111112222222 23456677888888888 322 2221222111111111011113456666778888999885
No 295
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.26 E-value=0.0048 Score=65.38 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=144.6
Q ss_pred EEEEecCC----CcEEEEEC--CCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEe----CCEEEEEEcC--CCcEEE--
Q 003331 488 YLFVGSHS----HKFICADA--KRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCY----KGKIYFLDYL--TGDIYW-- 552 (829)
Q Consensus 488 ~l~igs~~----g~l~~~d~--~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~----dg~l~~~d~~--tG~~~w-- 552 (829)
++|+|+.. +.|+.|+. .+|++...... ....-...+++++++.||+... ++.|..|+.. +|++..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47888876 56766655 77776543221 1111224566778899999976 3577666543 366543
Q ss_pred EEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC-CeEEEeec---c--C--------CcccccceeecCCCEEEE
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YRCVYKLP---C--G--------GSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~~~w~~~---~--~--------~~~~~~~~~~~~~~~l~v 617 (829)
+....+...+...+++++..+|++.+ +|.+..++... |.+..... . . ..-.-...++++++.+|+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334444555667778889999875 67788888765 65544321 1 0 011112345666788888
Q ss_pred Eec-CCeEEEEEccCCCceEEE--eeccC-CcceeeeeeeecCCEEEEEee-CCeEEEEc-C--CCCEEEE--eecC-Cc
Q 003331 618 AST-SGRLTAISVKALPFHTLW--LHELE-VPAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIWR--CRTG-GP 686 (829)
Q Consensus 618 ~t~-~g~l~~~~~~~~~g~~~w--~~~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~--~g~~~w~--~~~~-~~ 686 (829)
... ...|+.|+.+...++... ..... ........+.++++.+|+... ++.|.+++ . +|.+... .... ..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 654 346888888764443322 11111 111234567778888888764 56788887 4 6644322 1111 00
Q ss_pred e--e-ecCccccc-CCCeEEEEee-CCeEEEEeC--CCCcEEEEE--ecCCccccccccccccccccccccCCCcEEEEE
Q 003331 687 I--F-AGPCTSFA-LPSQVLICSR-NGSIYSFEQ--ESGNLLWEY--SVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 687 ~--~-~~~~~~~~-~~~~i~~~t~-~g~l~~~d~--~tG~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
. . ....+... .+..+|+... .+.|.+|+. .+|++.... ...........+ ..++.++|++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----------s~~g~~l~Va 309 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----------SPDGRYLYVA 309 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------------TTSSEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----------eCCCCEEEEE
Confidence 0 0 00011122 2446888764 345666665 667775432 222221111111 2247888887
Q ss_pred cc-CCcEEEEEee
Q 003331 758 TS-SGSIHILRVN 769 (829)
Q Consensus 758 ~~-~G~l~~~d~~ 769 (829)
.. ++.|.+|+.+
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 64 5678887664
No 296
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.25 E-value=5.5e-05 Score=79.88 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=155.3
Q ss_pred ccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003331 464 ELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 464 ~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
..|++.-..||.-- -+..++..+.++.. .+++.||+++|..+-..+.+...+.+++.+.+|+.+..|+.|..+..|
T Consensus 5 ~~~r~~~~hci~d~---afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 5 LTWRDKAEHCINDI---AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhhhcccccchhee---EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 45777666666421 12234555555554 469999999999998888887777788999999999999999999999
Q ss_pred EcCC-CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 544 DYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 544 d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
+.+- |.+ +|..++.+. ...+.+-...+...+.+ .+-.|.++.... -++... .-..+.....++.++.+|-.+|
T Consensus 81 ~~klEG~L--kYSH~D~IQ-CMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss-~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 81 TSKLEGIL--KYSHNDAIQ-CMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSS-SRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ccccccee--eeccCCeee-EeecCchHHHhhhcchh-hccccChhhhhH-Hhhhhh-eeEEEeeecCCCcEEEEeccCc
Confidence 8653 333 344444433 33444433334433322 233444333211 111111 1122334445567788888899
Q ss_pred eEEEEEccCCCceEEEeeccC---Ccceeeeeeeec-----CCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCccc
Q 003331 623 RLTAISVKALPFHTLWLHELE---VPAFASLCITSA-----NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTS 694 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~---~~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~ 694 (829)
+|..-|.. |+..-..+.+ .....+.+..+. ++.+.+..++.++..+.-+|+.+-+-..- -+...|+.
T Consensus 155 TIsiRNk~---gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L--~FdP~Cis 229 (1081)
T KOG1538|consen 155 TISIRNKN---GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL--NFDPCCIS 229 (1081)
T ss_pred eEEeecCC---CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC--CCCchhhe
Confidence 88776544 5544444331 112233343332 33555555655555555455554321110 01122222
Q ss_pred -ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 695 -FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 695 -~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
...+..+.+|..++.+..|- ..|-.+-+.-.-.....+.... ++++.+.+|+.||+|-+|+.-
T Consensus 230 Yf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~-----------PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK-----------PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc-----------cCCceEEEEEccCeeehhhhH
Confidence 33456788888888888886 4454433222111111222221 237889999999999988764
No 297
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.00013 Score=71.36 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=111.5
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-eee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQ 563 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~ 563 (829)
..|.++-.+|.+.+||..||+.+-.++........+.+.. ....|++++.||.|.+||..+-...-++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4577777889999999999998888876654444444444 3457899999999999998876554333332221 111
Q ss_pred eeeec--CCCEEEEecc----CCeEEEEEcCCCeE-EEee-ccCCccccccee-ecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 564 PVVDA--PRQLIWCGSH----DHNLYALDFRNYRC-VYKL-PCGGSIFGSPAI-DEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 564 ~~~~~--~~~~i~~gs~----~g~l~~~d~~tg~~-~w~~-~~~~~~~~~~~~-~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
..++. .++.+-+|+. +-.|+.||...-+. +..+ ..+..-+....+ ..+.+.|+.|+.||.+..||.+...-
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 22332 3445555542 45689999876544 2221 122222333333 33457888999999999999774210
Q ss_pred e--EEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 635 H--TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 635 ~--~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+ .+..... ........... .-++||+-+..++++.|+ ..|..
T Consensus 201 eDaL~~viN~-~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 201 EDALLHVINH-GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred hhhHHHhhcc-cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 0 0000111 11112222222 224788888888888888 66653
No 298
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.21 E-value=0.00011 Score=70.56 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=140.9
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC------------CcE------EEE-EecCCeeeeeeeeecCCCEEEEeccCCe
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLT------------GDI------YWT-FQTCGEVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t------------G~~------~w~-~~~~~~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
.+.++.||..+..|+.|..|..+|.+- |.. +.+ |+.-++ .....+.+....+..|+.|+.
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-vn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-VNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-ccceeecchhheEEeccCCCe
Confidence 566778888888899999999998651 110 111 111112 223445555677788999999
Q ss_pred EEEEEcCCCeEEEeec--cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC---cceeeeeeeecC
Q 003331 582 LYALDFRNYRCVYKLP--CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV---PAFASLCITSAN 656 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~---~~~~s~~~~~~~ 656 (829)
+..||...-..+..++ .......++.+.+.++.+++||.-..+..||+++ -+..-...... ........+..+
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc--eeEeeecCcccccccceeEEEecCCc
Confidence 9999976432222111 1223445566677789999999999999999997 43332222111 112233444456
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEEEee---cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc---
Q 003331 657 RHVICCLVDGHVVALD-SSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP--- 729 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~--- 729 (829)
.....++.||.|..|| -+++.+-.+. .+..+.+..+ ...+..|.....|..++.|...||+.+-.|...+.
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR 351 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence 6666788999999999 6776654433 2223333321 11233566667788999999999999876653211
Q ss_pred -cccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 730 -ITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 730 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
...+-.+.+ . .+.++.... ..+.+..||.++.
T Consensus 352 q~~rtqAvFN------h----tEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 352 QKHRTQAVFN------H----TEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred hhhhhhhhhc------C----ccceEEccccccCceeeccccch
Confidence 111111111 1 144555443 4677999998865
No 299
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.21 E-value=0.00013 Score=77.00 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=148.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE------EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE--E-e
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT--F-Q 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~------w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~--~-~ 555 (829)
....||++..+|.|..+|...-.+. -....+...+......+....++..+.|.++.+||.+++++.-. + .
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 5778999999999999997654433 11122333333334445555677788899999999998887643 2 2
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-----------------------------EEeeccCCccccc-
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-----------------------------VYKLPCGGSIFGS- 605 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-----------------------------~w~~~~~~~~~~~- 605 (829)
..+.+++....-.+...+.+|+.||.+..||..-... .|+.. .+.+.++
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssv 221 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSV 221 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeee
Confidence 2334444333333445666789999999999752210 00000 1122221
Q ss_pred -ceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeec------cCCc-----ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 606 -PAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHE------LEVP-----AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 606 -~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~------~~~~-----~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.++..|+..|..++. |+.+-+||+.+ -......+ .... .+.+......+.++++.+.|+.||+||
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk--~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRK--NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecc--cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 223333566666555 89999999876 22222111 1111 123334444578999999999999999
Q ss_pred -CC--CCEEEEeecC--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccc
Q 003331 673 -SS--GSIIWRCRTG--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLE 745 (829)
Q Consensus 673 -~~--g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~ 745 (829)
.. -.++..+... ...+...++ .-.+..+..|+.+...|.|..++-+.--....+.. +...-+
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w---------- 368 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW---------- 368 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee----------
Confidence 32 1222222110 011111111 11245677888888888887765432100011111 000000
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.......++.+++|-++.+|+...+.
T Consensus 369 -~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 369 -LPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -ccccCCCceeeccCcceEEEeccCch
Confidence 01113456666888899999987654
No 300
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.19 E-value=0.00042 Score=74.12 Aligned_cols=311 Identities=13% Similarity=0.150 Sum_probs=163.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC----c---------EEEEEEc-CCcee--eceEEeeCCcEEEEEEeCCEEEEEEcCCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRS----S---------VLWEIKL-EGRIE--CSAAVLADFSQVVVGCYKGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg----~---------~~w~~~~-~~~~~--~~~~~~~~~~~v~vg~~dg~l~~~d~~tG 548 (829)
....|-+--.|+.||.||..+- + .+|..+. +-.+. .+.++- . +-+...+.|++|..||++.+
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp-~-~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP-R-GCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC-c-cceeEecCCCcEEEeecccc
Confidence 3445555556788999998752 2 3554332 11111 122222 2 34666777999999997653
Q ss_pred ---cEEEEEecC----------C-----------------------e-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 549 ---DIYWTFQTC----------G-----------------------E-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 549 ---~~~w~~~~~----------~-----------------------~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
.+..+--.. + . -.-+..+.+++..+..|..-|+|+.+|+..-+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 332210000 0 0 01223445566677777777899999987765
Q ss_pred EEEeeccCCcc-----cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC--EEEEEee
Q 003331 592 CVYKLPCGGSI-----FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR--HVICCLV 664 (829)
Q Consensus 592 ~~w~~~~~~~~-----~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~--~l~~~~~ 664 (829)
..-....+... ++.|.+.. ..+..++.+.-|.+||... .-.++.+...+...+.+..+...+. .++.+..
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~--kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTN--KLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhheecccceeEEEeecCchhhh--HhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 55444444321 23333332 4566677788888998763 1223333333333334444444432 2333333
Q ss_pred CCeEEE-Ec-C--CCCEEEE-ee-cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccc
Q 003331 665 DGHVVA-LD-S--SGSIIWR-CR-TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 737 (829)
Q Consensus 665 ~g~i~~-~d-~--~g~~~w~-~~-~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 737 (829)
|..++. .+ + +|.+.-+ .. ... .++...+ .-.-+.+..++.|..|..||.++|+..-.++....-...+.-
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V--dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK- 646 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV--DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK- 646 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeee--CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-
Confidence 332221 11 1 2322110 00 011 1111111 112356888889999999999999998776643322111110
Q ss_pred cccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEEC--CEEEEeeeCCe
Q 003331 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG--GRVFVGCRDDY 815 (829)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--~~l~vg~~~g~ 815 (829)
....+++.+++..+.|.+|.++|..+|.. ....--+++++....+.+ ..|+..+.||.
T Consensus 647 -------v~lDPSgiY~atScsdktl~~~Df~sgEc-------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 647 -------VILDPSGIYLATSCSDKTLCFVDFVSGEC-------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred -------EEECCCccEEEEeecCCceEEEEeccchh-------------hhhhcCcchheeeeeecccchhheeecCCce
Confidence 01123478888899999999999987731 221122333444333333 36777788999
Q ss_pred EEEEeccc
Q 003331 816 IYCIALET 823 (829)
Q Consensus 816 l~~~d~~t 823 (829)
|+.|.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99998753
No 301
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.19 E-value=0.0001 Score=75.35 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=104.2
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC-Ccceee
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE-VPAFAS 649 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s 649 (829)
-++..|+..+.+..||.+..-+......+...+....+...+.+|..++..|.|.+.+..+ +...-.+..+ ....--
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc--CccccceecCCCCeEEE
Confidence 4455677788999999884333222232333223333333456777778888888888776 4333233222 111111
Q ss_pred eeeeec-CCEEEEEeeCCeEEEEcCCC-CEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 650 LCITSA-NRHVICCLVDGHVVALDSSG-SIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 650 ~~~~~~-~~~l~~~~~~g~i~~~d~~g-~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
..+... .-.+.+++++|.|..||.+| .+++... .........|......-.+.....|..|+.||....+..-.+..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y 249 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY 249 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence 122222 23455677889999999434 3332221 11111111111222223344457799999999876655444444
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+.....+.+. +-++++|+..|.|+.||.+.-
T Consensus 250 ~~Plstvaf~~~------------G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 250 SHPLSTVAFSEC------------GTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred cCCcceeeecCC------------ceEEEeecCCceEEEEecccC
Confidence 445444444433 788999999999999998754
No 302
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.17 E-value=4.4e-05 Score=78.36 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=121.6
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEE-EEc----CCc-eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEE---
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWE-IKL----EGR-IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTF--- 554 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~-~~~----~~~-~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~--- 554 (829)
.+.+...+.||.+..||...-+..-+ +.. +.+ ...++.+..++..|..||.||.|.+|+..+-. ....+
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 45566678899999999876442222 211 122 23466788899999999999999999953211 11111
Q ss_pred ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeecc-C-CcccccceeecCCCEEEEEec------CCeEE
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPC-G-GSIFGSPAIDEVHDVLYVAST------SGRLT 625 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~-~-~~~~~~~~~~~~~~~l~v~t~------~g~l~ 625 (829)
...+.-..+..|+.++++|..=+.|+.+..||+..-+ ++..... . ......+++++++..|+.|+. .|.|+
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 2233345666777778888888889999999987643 3322211 1 122345667776677777763 46799
Q ss_pred EEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 626 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.||..+ ...+.++.............+.-+.|++|+.+|++++|-
T Consensus 441 f~d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 441 FFDRMT--LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEeccc--eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999887 777777766544444444555667899999999998864
No 303
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0018 Score=70.77 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=124.5
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+... .+..+.....++.+++||..++..+. +..|+.+|..+|+........+. ...+.+++++..|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEE
Confidence 5777776544332 22223334567899999887765443 34799999998876543333322 3456777777777
Q ss_pred EEe-ccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCG-SHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~g-s~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++. +.+| .||.+|.++|+....... ......+.+++++..|++.+..+ .||.+|+++ |+... ........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~-lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQR-ITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEE-eecCCCCc
Confidence 654 3343 599999998876543322 23445677887777776666432 678888776 54322 22222222
Q ss_pred eeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCe---EEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGS---IYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~---l~~~d~~tG~~ 720 (829)
..+.++++++.+++...+ ..++.+| .+|+.. ....... ...|.... .+..|++.+.++. ++.++. +|+.
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~-~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~ 409 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFL-DETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRF 409 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCC-CCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCC
Confidence 456677788887766543 3478888 667543 2221111 11222221 2335666665553 666665 4555
Q ss_pred EEEE
Q 003331 721 LWEY 724 (829)
Q Consensus 721 ~w~~ 724 (829)
...+
T Consensus 410 ~~~l 413 (429)
T PRK03629 410 KARL 413 (429)
T ss_pred eEEC
Confidence 4443
No 304
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.17 E-value=0.00019 Score=81.57 Aligned_cols=249 Identities=17% Similarity=0.121 Sum_probs=139.7
Q ss_pred ceEEee-CCcEEEEEEeCCEEEEEEcCC--Cc---E--EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC--C
Q 003331 521 SAAVLA-DFSQVVVGCYKGKIYFLDYLT--GD---I--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN--Y 590 (829)
Q Consensus 521 ~~~~~~-~~~~v~vg~~dg~l~~~d~~t--G~---~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t--g 590 (829)
..+++. ++..++.|+.||.|.+||... |+ . .-++...+.-.........++.+.+++.||.+..+++.. +
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 344444 447888999999999999653 22 1 122332222222233344567788899999888777654 2
Q ss_pred eE-----EEeecc--CCccccccee-ecCCC-EEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEE
Q 003331 591 RC-----VYKLPC--GGSIFGSPAI-DEVHD-VLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHV 659 (829)
Q Consensus 591 ~~-----~w~~~~--~~~~~~~~~~-~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l 659 (829)
+. ....+. .+........ ..... .+..+|..+.+..||+.. -...|+.+... ....+.++.+....+
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecCCceEE
Confidence 11 111111 1111111111 11123 567778888899999886 67788876543 334677777778888
Q ss_pred EEEeeCCeEEEEc-CCCCEE--EEeecCCceeecCcccccC-CCe-EEEEe-eCCeEEEEeCCCCcE---EEEE-ecCCc
Q 003331 660 ICCLVDGHVVALD-SSGSII--WRCRTGGPIFAGPCTSFAL-PSQ-VLICS-RNGSIYSFEQESGNL---LWEY-SVGDP 729 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~--w~~~~~~~~~~~~~~~~~~-~~~-i~~~t-~~g~l~~~d~~tG~~---~w~~-~~~~~ 729 (829)
.+|+..|.+.+|| +-+.++ |+++...++...-+..... +.. +..+. ..+.|..|+..+|.- +|.- ..+.-
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcch
Confidence 9999999999999 666554 7776554432221111111 122 33333 567899999988854 3432 11111
Q ss_pred ccccccc----ccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 730 ITASAYI----DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 730 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
....|.. ..............++.++.|..|.+|..||...-
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1111111 00000001112234788999999999999998654
No 305
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2e-05 Score=81.84 Aligned_cols=261 Identities=12% Similarity=0.120 Sum_probs=139.5
Q ss_pred cccccccccc--cccccccceEEeeCCCeEEEEecCCCcEEEEECCC--------CcEEEEEEcCCceeeceEEeeCCcE
Q 003331 461 FIQELWKVHM--ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR--------SSVLWEIKLEGRIECSAAVLADFSQ 530 (829)
Q Consensus 461 ~~~~~W~~~~--~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t--------g~~~w~~~~~~~~~~~~~~~~~~~~ 530 (829)
.++..|...+ ....++.-...+......++.++.+|.|..|+++. -+++|+|..+...+.+.++...+..
T Consensus 279 a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 279 AFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred hhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 4567788664 22222222222334567899999999999998821 2578999888776677888888899
Q ss_pred EEEEEeCCEEEEEEcC------CCc---EE-EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 531 VVVGCYKGKIYFLDYL------TGD---IY-WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~------tG~---~~-w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+|.|+-||.|.||+.. +.- .+ -.+..+....-...+......|...+.||+++.|++....+ ..+....
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 9999999999999532 111 11 01111222222233444556688888899999998776544 1111110
Q ss_pred cccccce-eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEcCCCCEE
Q 003331 601 SIFGSPA-IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALDSSGSII 678 (829)
Q Consensus 601 ~~~~~~~-~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d~~g~~~ 678 (829)
. ...|. ++-..........+..+..+.+.+ .+. .....++.+ ..++...++.-++++
T Consensus 438 e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~--~ev------------------~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 438 E-HGYPLSVDRTSSRPAHSLASFRFGYTSIDD--MEV------------------VSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred c-cCCcceEeeccchhHhhhhhcccccccchh--hhh------------------hhheeeccccCCCcccccCccceEE
Confidence 0 00010 000000000000001011111111 000 001111111 111122222222222
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 679 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
|. + ..+..|.+-.++.|..+|..+|+++...........+..++. ++.++..++
T Consensus 497 s~----------~-----~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-----------ng~~l~s~s 550 (577)
T KOG0642|consen 497 SH----------P-----TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-----------NGPYLMSGS 550 (577)
T ss_pred ec----------C-----CCCeeEecccCCceecccccccccchheeeccceecceeecC-----------CCceEEeec
Confidence 22 1 124566677889999999999999876655544444444443 388999999
Q ss_pred cCCcEEEEEee
Q 003331 759 SSGSIHILRVN 769 (829)
Q Consensus 759 ~~G~l~~~d~~ 769 (829)
.||.+..|...
T Consensus 551 ~d~sv~l~kld 561 (577)
T KOG0642|consen 551 HDGSVRLWKLD 561 (577)
T ss_pred CCceeehhhcc
Confidence 99999988765
No 306
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00094 Score=68.12 Aligned_cols=215 Identities=19% Similarity=0.168 Sum_probs=119.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE-EecC-Ce--eee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTC-GE--VKC 562 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~-~~--~~~ 562 (829)
..+|+--..+.|+.||+.+|+.. .+..++.+ .+....+.++.|++ + +.+++.++.++|..+-. .... +. ...
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~-~~~~~~d~~g~Lv~-~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKKR-VFPSPGGF-SSGALIDAGGRLIA-C-EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCceE-EEECCCCc-ccceeecCCCeEEE-E-ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 35777777889999999888654 24445544 23344444445544 4 34477888776666311 2211 11 111
Q ss_pred eeeeecCCCEEEEeccC------------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003331 563 QPVVDAPRQLIWCGSHD------------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
.-...+..|.+|+++.. |.||.+|+. |..+......-...+.+++++++..+|++-. .+.+++++.
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 11223345889998765 458999974 4443333322344566788887888888755 478888876
Q ss_pred cCCCceE----EEeeccCCcceeeeeeeecCCEEEEEeeCC--eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEE
Q 003331 630 KALPFHT----LWLHELEVPAFASLCITSANRHVICCLVDG--HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 630 ~~~~g~~----~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g--~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
+..+|.. .+......+..........++++|++...+ .|.+++.+|+++-++..+....+.++......+.||+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 6212221 111111112222223444678899655443 8999996699998887764333333222222345666
Q ss_pred Eee
Q 003331 704 CSR 706 (829)
Q Consensus 704 ~t~ 706 (829)
.+.
T Consensus 273 Ts~ 275 (307)
T COG3386 273 TSA 275 (307)
T ss_pred Eec
Confidence 543
No 307
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.15 E-value=4.8e-07 Score=88.56 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=68.4
Q ss_pred ccccccccCccccchhhhhhcccccCCccccCCcccccCCCCC------------------ccCCCCCC-eeeeccccce
Q 003331 374 DKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLP------------------WNLSSVPM-SCSFSRCNKV 434 (829)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~------------------~~~~~~~~-~~s~~~~~~~ 434 (829)
+++||||++.|.+.+|.+|+..|+.+.++|++++++......+ +|..||.| |||+||.+|+
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~~~v~~l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~ 80 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPLLPVYGLQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAF 80 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccCceeeccccCcccccccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHH
Confidence 4699999999999999999999999999999999885322221 12229999 9999999999
Q ss_pred e--eccccccccccccceeecccc
Q 003331 435 M--HEEKIRGNDLCGVNWSLEVPR 456 (829)
Q Consensus 435 ~--~~~~~~~~~~~~~~~~~~~p~ 456 (829)
+ .+++.+++.+.+.++.-..+.
T Consensus 81 evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 81 EVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHhCCCeEEEEEEeccCCC
Confidence 8 778899999998887755554
No 308
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.001 Score=73.05 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=125.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+... .+..+.....++.+++++..|+..+++ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 185 ~l~i~D~~g~~~~-~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQ-TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCce-EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEE
Confidence 5777887544333 232233334577888898887776643 369999999888654332232 33456777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.+| .||.+|..+|+... ..........+.+++++..+++.+. +| .+|.++.++ |+... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~-lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAER-LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEE-eecCCCCc
Confidence 54 44444 59999999887543 3223334456777777777776654 33 488888776 54322 11122222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~ 720 (829)
..+.++++++.+++.+.++ .|+.+| .+|+.. ....+.. ...+.... .+..|++.+.+ +.|+.++.. |..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~-~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~ 414 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSL-DESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRV 414 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCC-CCCceECC-CCCEEEEEEecCCceEEEEEECC-CCc
Confidence 3567778888888765443 588888 777654 2222211 11222111 23345555542 358888864 444
Q ss_pred EEEE
Q 003331 721 LWEY 724 (829)
Q Consensus 721 ~w~~ 724 (829)
....
T Consensus 415 ~~~l 418 (433)
T PRK04922 415 RQRL 418 (433)
T ss_pred eEEc
Confidence 4333
No 309
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.0002 Score=75.08 Aligned_cols=224 Identities=10% Similarity=0.049 Sum_probs=108.6
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
.+...|..|..|+.||+|..|...||+++|++...+.+.+. .+.+. +--|++......+..+++.=|..+-.......
T Consensus 407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~v-aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSV-AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred EecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEE-EecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 34445667889999999999999999999999988876654 34332 22344444444577777766633322211111
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCC---CceEEEeeccCCcceeeeeeeecCCEEEEEee---CCeEEEEc-CC
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKAL---PFHTLWLHELEVPAFASLCITSANRHVICCLV---DGHVVALD-SS 674 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~---~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~---~g~i~~~d-~~ 674 (829)
....|..... ++.+..|..... .+...-.+....+ .........++++.+... +..+++.. ..
T Consensus 486 l~~~~~~~~p---------~~~~~~W~~~~~~e~~~~v~~~I~~~k~-i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 486 LASAPNESEP---------DAAVVTWSRASLDELEKGVCIVIKHPKS-IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhcCCCccCC---------cccceeechhhhhhhccceEEEEecCCc-cceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 1122111110 111222221100 0000000111111 112222223444433322 22344444 22
Q ss_pred CCEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 675 GSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 675 g~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
.+..--+. ..+.+....+.+. .-.++++|.. .|..||.....++-++..+....++..+. ..|..
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs--~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msih-----------p~GDn 621 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPS--KPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIH-----------PNGDN 621 (733)
T ss_pred ccccCchhhcCCceeEEEecCC--CceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeec-----------CCCCe
Confidence 22111111 1111211111111 2367777754 59999988766554444444433333332 23889
Q ss_pred EEEEccCCcEEEEEeecC
Q 003331 754 VCICTSSGSIHILRVNLD 771 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~ 771 (829)
+++++.++.+..+|.+-.
T Consensus 622 li~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLS 639 (733)
T ss_pred EEEecCCCeeEEEEcccC
Confidence 999999999999998743
No 310
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.09 E-value=0.0014 Score=62.66 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=135.5
Q ss_pred EeeCCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE-EEEec--
Q 003331 481 VLKDSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQT-- 556 (829)
Q Consensus 481 ~~~d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~-w~~~~-- 556 (829)
+..+.++.||.+. ..|.+=.+|+.||+.. ++.++....-..++...++..|+......|.++|.+|+++. |....
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc
Confidence 3334678777765 4577889999999986 35665443223344444456888765558999999888764 33321
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCC-eEEEEEccCCCc
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPF 634 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g 634 (829)
......+++++ ..+.+|+....|..-.+|+.++.+ +|....+..... +|... ++.||+++..+ .|..+|+.+ |
T Consensus 146 a~~nlet~vfD-~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyG-i~atp-dGsvwyaslagnaiaridp~~--~ 220 (353)
T COG4257 146 ADANLETAVFD-PWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYG-ICATP-DGSVWYASLAGNAIARIDPFA--G 220 (353)
T ss_pred CCCcccceeeC-CCccEEEeeccccceecCcccCceeeeccCCCCCCcc-eEECC-CCcEEEEeccccceEEccccc--C
Confidence 22234455555 567888877777667889887643 344443433333 33333 47788876544 466777766 4
Q ss_pred eEEEeeccCCc-ceeeee-eeecCCEEEEEee-CCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEe-eCC
Q 003331 635 HTLWLHELEVP-AFASLC-ITSANRHVICCLV-DGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNG 708 (829)
Q Consensus 635 ~~~w~~~~~~~-~~~s~~-~~~~~~~l~~~~~-~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g 708 (829)
... .+..... ...+-. .+...+.+|+.+. .+.++.|| ++. -..|.....++- ...+..+..+.||+.. ..|
T Consensus 221 ~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ar--pys~rVD~~grVW~sea~ag 297 (353)
T COG4257 221 HAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKAR--PYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred Ccc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCC--cceeeeccCCcEEeeccccC
Confidence 211 1111111 111112 2334578888765 56799999 443 233444332221 1112355678899853 457
Q ss_pred eEEEEeCCCCcEE
Q 003331 709 SIYSFEQESGNLL 721 (829)
Q Consensus 709 ~l~~~d~~tG~~~ 721 (829)
.|..||+++-++.
T Consensus 298 ai~rfdpeta~ft 310 (353)
T COG4257 298 AIGRFDPETARFT 310 (353)
T ss_pred ceeecCcccceEE
Confidence 8999999887663
No 311
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00018 Score=71.70 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=128.1
Q ss_pred CCCeEEEEecCCCcEEEEECC-----CCcEEEEEEcCCceeeceEEee-CCcEEEEEEeC--CEEEEEEcCCCcEEEEEe
Q 003331 484 DSDIYLFVGSHSHKFICADAK-----RSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYK--GKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~-----tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~d--g~l~~~d~~tG~~~w~~~ 555 (829)
-.++.|..+..+|.+..+..+ +.+++|.. .+.... ..--.+ +...+..|+.. ..+-.||+++++.+|+-.
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~-~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLY-DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCcee-eeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 357888888889999999877 44555533 332221 111112 22234447666 678999999999999754
Q ss_pred cCC--------eeee-eeeeecC--CCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCe
Q 003331 556 TCG--------EVKC-QPVVDAP--RQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR 623 (829)
Q Consensus 556 ~~~--------~~~~-~~~~~~~--~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~ 623 (829)
.-. .+.. ...|.+. ...+.+++..+.++.||+..+ +++-.+.......++....+.++.||+|...|.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 321 1111 1223333 456788888999999999876 577777777777777777777899999999999
Q ss_pred EEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 624 LTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
+..||... ++..-. ++.-.....+....+....+..++-|..+.++| ++.+++
T Consensus 271 l~~FD~r~--~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 271 LAKFDLRG--GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred hheecccC--ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999887 665543 332233334555555556777788888899999 665554
No 312
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.002 Score=70.67 Aligned_cols=217 Identities=16% Similarity=0.079 Sum_probs=121.7
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|...+. ......+.....++.+++++..++..+++ ..|+.||..+|+........+ ....+.+.+++..
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCE
Confidence 467777765433 22333333345678999999888776654 369999999887543222222 2235677777777
Q ss_pred EEEec-cCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCe--EEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGS-HDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGR--LTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs-~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~--l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++++ .+| .||.+|..+++... ...+......+.+++++..+++.+ .+|. |+.++..+ +..... ....
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l-~~~~-- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLV-GGRG-- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEe-cCCC--
Confidence 76654 455 47888988776543 333334456777888777776655 3454 44555443 433221 1111
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC--CCCcEEEE
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ--ESGNLLWE 723 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~--~tG~~~w~ 723 (829)
..+.++++++.+++.+. ..++.+| .+|+....... .. ...+.... .+..|++++.+|....|.. .+|+.+-+
T Consensus 336 -~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~-~~-~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 -YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSST-FL-DESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred -CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCC-CC-CCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 23456778888877765 4577789 77765321111 11 11121111 2335666666765554442 45666555
Q ss_pred Ee
Q 003331 724 YS 725 (829)
Q Consensus 724 ~~ 725 (829)
+.
T Consensus 411 l~ 412 (429)
T PRK01742 411 LP 412 (429)
T ss_pred cc
Confidence 44
No 313
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0036 Score=68.80 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=120.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+..|....... ..........++.+++|++.|+..+.+ ..||.+|..+|+........+ ....+.+++++..|
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEE
Confidence 4555665433322 122222234578889998877766543 269999999887643322222 23456777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-C--CeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-S--GRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~--g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+|+..- ..........+.+++++..+++.+. + ..++.+|.++ |+... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEE-EecCCCCC
Confidence 55 44455 49999998887543 2223334456777777777766553 2 3588888876 54322 11111222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-C--eEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-G--SIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-g--~l~~~d~~tG~~ 720 (829)
..+.++++++.+++.+..+ .|+.+| .+|+.. ...... ....|.... .+..|++.+.+ | .++.++. +|+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 3456777888887765533 467788 666542 221111 111222221 23345554433 3 3777775 5665
Q ss_pred EEEEe
Q 003331 721 LWEYS 725 (829)
Q Consensus 721 ~w~~~ 725 (829)
.....
T Consensus 429 ~~~l~ 433 (448)
T PRK04792 429 KARLP 433 (448)
T ss_pred eEECc
Confidence 54443
No 314
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.07 E-value=0.0011 Score=74.99 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=146.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--------------EEEE----EecCCeeeeeeeeecCCCEEEEeccCC
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--------------IYWT----FQTCGEVKCQPVVDAPRQLIWCGSHDH 580 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--------------~~w~----~~~~~~~~~~~~~~~~~~~i~~gs~~g 580 (829)
..+.-++.||.++++|+.|..|..|....+- ..|+ +..+..-.....+++++.++..++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 3455588999999999999988888865311 1232 222222222334455567777889999
Q ss_pred eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec------cCCcceeeeeeee
Q 003331 581 NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE------LEVPAFASLCITS 654 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~------~~~~~~~s~~~~~ 654 (829)
.+..||..+.+.+-++..+....-...+|+-+.++..-+.|+.|.+|+..+ -....... .....|.-+..++
T Consensus 152 sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCC
Confidence 999999999988888877766666777888788888889999999998554 11111111 1122344456667
Q ss_pred cCCEEEEEe-eCCeE---EEEcCCCCEEEEeec-----CCce---eecCcccccCCC------------eEEEEeeCCeE
Q 003331 655 ANRHVICCL-VDGHV---VALDSSGSIIWRCRT-----GGPI---FAGPCTSFALPS------------QVLICSRNGSI 710 (829)
Q Consensus 655 ~~~~l~~~~-~~g~i---~~~d~~g~~~w~~~~-----~~~~---~~~~~~~~~~~~------------~i~~~t~~g~l 710 (829)
++.++.+.. .++.. -.++++ -|+... .+++ ...|.+.....+ .+-+|+.|+.|
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~---tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERG---TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred CcCeecchhhccCCcceeEEEecC---CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 777776542 23332 233321 144321 1111 111212111111 35577889999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccc
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGK 775 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~ 775 (829)
..|+...-+++.... .+......| .+..++|-.+++++.||+|..+..+....|.
T Consensus 307 SVW~T~~~RPl~vi~---~lf~~SI~D-------msWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 307 SVWNTALPRPLFVIH---NLFNKSIVD-------MSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EEEecCCCCchhhhh---hhhcCceee-------eeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 999876666543211 111112222 2344568899999999999999988765554
No 315
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.06 E-value=0.0012 Score=63.07 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=128.6
Q ss_pred EEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeecc--
Q 003331 523 AVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPC-- 598 (829)
Q Consensus 523 ~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~-- 598 (829)
...+| +.||.+. ..+.|-.+|+.||+..- +..+......-++.+.++..|+......|..+|.++++. .|....
T Consensus 68 apapd-G~VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 68 APAPD-GAVWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred ccCCC-CceEEecCccccceecCCCCCceEE-EecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc
Confidence 34445 4566554 45678899999999874 555443333334445567788876655899999988765 344433
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCce-EEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCC
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSG 675 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g 675 (829)
......++++++ .+.||+....|.--.+|+.+ +. .+|.... ......++.. -++.+|+.+. +..|..+| .+|
T Consensus 146 a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~--~~i~vfpaPq-G~gpyGi~at-pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 146 ADANLETAVFDP-WGNLWFTGQIGAYGRLDPAR--NVISVFPAPQ-GGGPYGICAT-PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCcccceeeCC-CccEEEeeccccceecCccc--CceeeeccCC-CCCCcceEEC-CCCcEEEEeccccceEEcccccC
Confidence 223455667776 78888887777555677765 32 2333221 1222333444 3566777654 45677788 666
Q ss_pred CEEEEeecCCc-eeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEE-EEecCCc--cccccccccccccccccccCC
Q 003331 676 SIIWRCRTGGP-IFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLW-EYSVGDP--ITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 676 ~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 750 (829)
... .+..... .-.+..+..+.-+.+|+.+. .+.++.+|+.+-. | ++.+++. -..+..+|+
T Consensus 221 ~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~------------ 285 (353)
T COG4257 221 HAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDR------------ 285 (353)
T ss_pred Ccc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeecc------------
Confidence 221 1211111 11111223344678998865 5689999988765 5 3343332 222233333
Q ss_pred CcEEEEEc-cCCcEEEEEeec
Q 003331 751 DRLVCICT-SSGSIHILRVNL 770 (829)
Q Consensus 751 ~~~l~~~~-~~G~l~~~d~~~ 770 (829)
.+.+|... ..|.|..||..+
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 56777743 345677777764
No 316
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00091 Score=73.44 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=109.4
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+........+ ....+.++++++.+++. +.++ .||.+|..+|+... ..........+.+.+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~ 305 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKS 305 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCE
Confidence 469999999887654333332 33467888888877654 4444 69999999887643 2222233445677777777
Q ss_pred EEEecc-CC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSH-DH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~-~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
+++.+. +| .||.+|..+|+..... ..+.....+.++++++.|++.+.++ .|+.+|+.+ |+... .... ..
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~~-Lt~~-~~ 380 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVRT-LTPG-SL 380 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeEE-CCCC-CC
Confidence 776654 33 4999998887654332 2333344677777778887765433 588899876 55442 2211 12
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEcCCCCEEEEe
Q 003331 647 FASLCITSANRHVICCLVD---GHVVALDSSGSIIWRC 681 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d~~g~~~w~~ 681 (829)
..++.+.+++..+++.+.. +.|+.++.+|......
T Consensus 381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 381 DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 2345667777777666543 3466666445444443
No 317
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.05 E-value=0.00033 Score=67.96 Aligned_cols=189 Identities=15% Similarity=0.068 Sum_probs=124.0
Q ss_pred CeEEEEec-CCCcEEEEECCCCcEEEEEEcCC---ce--eeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEec--
Q 003331 486 DIYLFVGS-HSHKFICADAKRSSVLWEIKLEG---RI--ECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQT-- 556 (829)
Q Consensus 486 ~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~---~~--~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~-- 556 (829)
+..+|..| .+.-|..||+-||+.+-.+..-+ .+ ..+..+++||.+||+|- ...|..||. ..|+..-.+.+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 34455444 56679999999999887665322 11 23678899999999985 678999997 66764322211
Q ss_pred C-----Ceeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003331 557 C-----GEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 557 ~-----~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
. ..+.+...+.+ +.+.+.+|++...+-.+.-..+.++.....++.-+....+.++++.+|+|+. +-.|.+||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 1 23344444444 3467888888876655555566777666555555566677777889999886 557999998
Q ss_pred cCCCceEEEeeccCCc---ceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CC
Q 003331 630 KALPFHTLWLHELEVP---AFASLCITSANRHVICCLVDGHVVALD-SS-GS 676 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~---~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~ 676 (829)
.. .+.++|....... -..-..+.+.+..+..|..+|.|.+|| ++ |.
T Consensus 281 R~-~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RY-SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hh-ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 85 3667776654322 112223444566777777899999999 54 55
No 318
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.04 E-value=0.0026 Score=69.87 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...++.. .+........++.++++++.++..+.+ ..|+.+|..+|+........+ ....+.+.+++..+
T Consensus 171 ~l~~~d~~g~~~~-~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQ-TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCCE-EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 5777776544333 222233334577888998888777654 479999999997654333332 23346677666666
Q ss_pred EE-eccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.+ ..||.+|..+++..... ........+.+..++..|++.+.. + .|+.++..+ ++.. .........
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE-EeecCCCCc
Confidence 54 3433 35999999887654332 222333455666666777665543 2 688888876 4432 222222223
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSI 677 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~ 677 (829)
..+.+.++++.+++.+.++ .|+.+| .++..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 4556677788888877655 788888 66543
No 319
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.03 E-value=0.0019 Score=62.88 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=116.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecC---Cee--eeeeeeecCCCEEEEeccCCeEEEEEc-CCCeEEEee--ccC--
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTC---GEV--KCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKL--PCG-- 599 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~---~~~--~~~~~~~~~~~~i~~gs~~g~l~~~d~-~tg~~~w~~--~~~-- 599 (829)
++.+.+.+.-|..||+-||+.+-.|..- +++ ..+..+.+++..||+| +...|..||. ..|...-.+ ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccc
Confidence 4555666788999999999998776432 222 3455677788888887 4668999998 555432111 111
Q ss_pred ---CcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc--
Q 003331 600 ---GSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-- 672 (829)
Q Consensus 600 ---~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-- 672 (829)
..+++...+.+.+ +.+.+++....+-.++-.. +.++.........+.......+++.+|.|.. +..|.+||
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 2344444444433 4677777766555555444 5666655544444556677788999999875 56899999
Q ss_pred CCCCEEEEeec-----CCceeecCcccccCCC-eEEEEeeCCeEEEEeCCC-Cc
Q 003331 673 SSGSIIWRCRT-----GGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQES-GN 719 (829)
Q Consensus 673 ~~g~~~w~~~~-----~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~t-G~ 719 (829)
..+.++|.... ...|+.. .+..+ .+..|..+|.|..||.++ |.
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FD----ld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFD----LDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hccchhhhhhhhccCccceEEEe----cCCCCceeeccCCCccEEEEecCCCCC
Confidence 57777776542 2333332 22334 445556899999999887 66
No 320
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0015 Score=71.37 Aligned_cols=190 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred CeEEEEecC---CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCC--EEEEEEcCCCcEEEEEecCCe
Q 003331 486 DIYLFVGSH---SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 486 ~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+..|+..+. ...|+.+|..+|+..-.....+ ....+.+++|++.+++ .+.++ .||.+|..++... ....+..
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~ 284 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLTQSSG 284 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECCCCCC
Confidence 344444442 2359999999997653332332 3346788999887765 44454 5888898776643 2322333
Q ss_pred eeeeeeeecCCCEEEEeccC-C--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHD-H--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~-g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~ 633 (829)
....+.+.+++..|++.+.. + .||.++..+++..... ..+.....+.+++++..|++.+..+ .|+.+|..+
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-- 361 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-- 361 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--
Confidence 34456777777777765543 2 5888887776543322 2233334577777778877666544 588999887
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEee
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 682 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~ 682 (829)
|+....... .....+.+.+++..+++.+.++ .+++++.+|.......
T Consensus 362 g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 362 GQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred CCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 554432221 1224566777888877776543 3555555565554443
No 321
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.99 E-value=0.00065 Score=71.97 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=126.5
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEE------EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--eccCC
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIY------WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGG 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~~~ 600 (829)
..+|++..+|+|..+|.+.-... .....+..........+..-.|+..+.|..+.+||.+++++.-. +-.+.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 46889999999999986543322 11112222222223334455677788899999999999887654 22222
Q ss_pred cccccceeecCCC-EEEEEecCCeEEEEEccCCC----------------c-----------eEEEeeccCCccee--ee
Q 003331 601 SIFGSPAIDEVHD-VLYVASTSGRLTAISVKALP----------------F-----------HTLWLHELEVPAFA--SL 650 (829)
Q Consensus 601 ~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~----------------g-----------~~~w~~~~~~~~~~--s~ 650 (829)
...-+.++...+. .+..|..||.+.+||..-.. + ...|... ...++. +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssvTv 223 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSVTV 223 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeeeEE
Confidence 2233344444334 44557789999999854311 0 0001000 001111 23
Q ss_pred eeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec------CCc---eeecCccccc-CCCeEEEEeeCCeEEEEeCCCC
Q 003331 651 CITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT------GGP---IFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 651 ~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~------~~~---~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.+..++..|..++. |+.|.+|| .......+..- ... .....++..+ .+..+|+.+.|+.||+||..+-
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 44456667766655 89999999 54433332210 000 0111111222 3457999999999999997653
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..-=...+......+.++ -.....++..+..|+.+...|+|..++-
T Consensus 304 s~sP~~~~sg~~~~sf~v-------ks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYV-------KSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CcCchhhccCcccceeee-------eeecCCCCceEeccCCCcceeeeeecCc
Confidence 221000011111111111 0112345889999999999999988753
No 322
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.0037 Score=68.77 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=99.5
Q ss_pred EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.|+.+|...+... .+..+......|.+.+++..|++.+. +..|+.+|..+|+........+ ....+.+++++..|
T Consensus 183 ~l~~~d~dg~~~~-~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVR-YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcE-EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 6888886544443 33334445567788877777766543 3579999999987643322222 34467777777776
Q ss_pred EEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCcee
Q 003331 616 YVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIF 688 (829)
Q Consensus 616 ~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~ 688 (829)
++. +.+| .||.+|.++ +... ...........+.+++++..+++.+.. ..|+.+| .+++.. +........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~--~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRS--GTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCC--CceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc
Confidence 554 3333 488889886 5432 222222223456777788888777643 2588888 555432 222221111
Q ss_pred ecCcccccCCCeEEEEeeC---CeEEEEeCCCCcE
Q 003331 689 AGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 720 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~ 720 (829)
..+.... .+..|++.+.+ ..|+.+|..++..
T Consensus 337 ~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 337 STPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce
Confidence 2222221 23455555433 2588888766543
No 323
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.98 E-value=0.00095 Score=64.45 Aligned_cols=263 Identities=13% Similarity=0.049 Sum_probs=149.5
Q ss_pred EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc----CC----------CcEE-----
Q 003331 491 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY----LT----------GDIY----- 551 (829)
Q Consensus 491 igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~----~t----------G~~~----- 551 (829)
.++.|+.-..|...+|+++-++..+.+...+..+.+.+..+..++.|++-..|.. +. ++..
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 3456777778888899998888877776777888888777788877776555531 00 0000
Q ss_pred ---------------------EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003331 552 ---------------------WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 552 ---------------------w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
-.+..+..+....-+-..+..++++++|.....||.++|+++..+..+......++..+
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP 324 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence 00000111111111122456788899999999999999999987766655445555554
Q ss_pred CCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCcee
Q 003331 611 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIF 688 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~ 688 (829)
....++..+.|-++..||.... -..+-.++.+.....+..+ ..+.+++.|+.|.++.+|| .+- ..+-++.+..++-
T Consensus 325 tQrLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF-~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVF-NTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred cceEEEEeccCceeEeccchhh-cceeeeecccccceeEEEE-ecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 3445556667777888886631 1112223333333333333 4567899999999999999 543 3444554444332
Q ss_pred ecCcccccCCCeE-EEEeeCCeEEEEeCCCCcEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 689 AGPCTSFALPSQV-LICSRNGSIYSFEQESGNLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 689 ~~~~~~~~~~~~i-~~~t~~g~l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.. ....++.| .+.-.+..|..||.. |..+-.++- .-.+.+..+..+.. -..++.+..|.
T Consensus 403 Rv---avs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp----------~cnLftcGFDR 468 (481)
T KOG0300|consen 403 RV---AVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHP----------ACNLFTCGFDR 468 (481)
T ss_pred ee---EeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCc----------ccccccccccc
Confidence 21 12223333 344445578888854 544333221 11233334443321 13456666677
Q ss_pred cEEEEEee
Q 003331 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.+.-|+.+
T Consensus 469 ~v~gW~in 476 (481)
T KOG0300|consen 469 MVAGWKIN 476 (481)
T ss_pred eeeeeEec
Confidence 77777654
No 324
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0008 Score=67.19 Aligned_cols=194 Identities=10% Similarity=0.108 Sum_probs=125.8
Q ss_pred CcEEEEEEeCCEEEEEEcCCC-----cEEEEEecCCeeeeeeeeecCCCEEEEeccC--CeEEEEEcCCCeEEEeeccCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTG-----DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD--HNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~--g~l~~~d~~tg~~~w~~~~~~ 600 (829)
++.|..+..+|.+..+..+.+ +++|. .++..+...-........+.+|+.. ..+-.||.++.+.+|.-..-.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 346777777888888887733 34443 2333222111122234555567777 678999999999999865421
Q ss_pred --------ccc-ccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEE
Q 003331 601 --------SIF-GSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 601 --------~~~-~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
+++ ....+-+. ...+..+|..+.+..||+... -.+.-.+.......++....++++.||+|+..+.+.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 111 22233332 346777888899999998861 245666666677778888888999999999999999
Q ss_pred EEc-CCCCEEEE-ee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 670 ALD-SSGSIIWR-CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 670 ~~d-~~g~~~w~-~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
.|| ..|++.-. +. ..+.+.+..+.+ ....+..++-|..|..+|.++.+++.+..
T Consensus 273 ~FD~r~~kl~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eecccCceeeccccCCccCCcceEEEcC--CCceEEeeccceeEEEeecccchhhhhhh
Confidence 999 77777644 22 122232222211 12356677789999999999977765443
No 325
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.0021 Score=70.66 Aligned_cols=179 Identities=12% Similarity=0.084 Sum_probs=106.6
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|..+|+........+ ....+.++++++.+++ .+.++ .||.+|..+|+..- ...+......+.+.+++..|
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred EEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEE
Confidence 69999999887643322222 2346788888887765 44444 49999998887643 22223334556777777777
Q ss_pred EEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++.+.. ..||.+|..+|+..... ..+.....+.++++++.+++.+.. + .|+.+|+++ |+..- .... ...
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~-lt~~-~~d 395 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQV-LTST-RLD 395 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEE-ccCC-CCC
Confidence 665432 35999999888754332 222223456777777788776543 2 577788776 54322 1111 112
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEee
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 682 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~ 682 (829)
.++.+++++..+++.+..+ .++.++.+|.......
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 3456677777777665433 2566665565544443
No 326
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=4.5e-05 Score=77.35 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=133.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+.+|...|.|.++|..|+++..++.....+. .+.+.... .+++.....-+|.|| ..|..+........+..-
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHne-q~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rL- 215 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNE-QFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARL- 215 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcch-HHHHhhhhceEEEec-CCCcEEeehhhcCchhhh-
Confidence 46678889999999999999999988877655443 23333332 344444567789999 788887766544433211
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
-+-+..-.+..++..|.+...|..+|+++-.+..+......+...+-+..+-+|..+|.|..|.++. -+++-+.-+..
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s--kePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS--KEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC--cchHHHHHhcC
Confidence 1222233455567778899999999999888777655554555555456677888899999999887 66666666666
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
....+.++...+.++.....|..+.+|| .+-..+..+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 6667888887777777777889999999 6544444443
No 327
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.0071 Score=66.58 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=118.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+..|...++.. ..........++.++++++.|+..+.+ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEE
Confidence 3666776544432 222233334577888898887665543 369999999997654332222 23356777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---CeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+++... ..........+.+++++..+++.+.. ..||.+++.+ |+... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEE-eecCCCCc
Confidence 64 33344 69999999887543 22233344567777777777766542 3688888876 54322 11112222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCC
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQE 716 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~ 716 (829)
..+.++++++.+++....+ .|+.+| .+|+...-.. ... ...+.... .+..+++.+.+ ..|+.++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~-~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TSL-DESPSVAP-NGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CCC-CCCceECC-CCCEEEEEEecCCceEEEEEECC
Confidence 3456677888887766433 478888 6665432111 111 11222221 23345555433 347777764
No 328
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.91 E-value=0.042 Score=59.95 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=151.3
Q ss_pred cCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC
Q 003331 493 SHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 493 s~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 570 (829)
..++.+..||..+ +........+........+.+++..++.++. ++.+..|+..+++.+..+..+........+.+.+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 4478899999876 5555555555554446777777777777764 9999999998888887776544433333444444
Q ss_pred CEEEEe-ccCCeEEEEEcCCCeEEE-eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCccee
Q 003331 571 QLIWCG-SHDHNLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA 648 (829)
Q Consensus 571 ~~i~~g-s~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 648 (829)
..+.++ +.++.+..||..++.... .+..+.... ...+..++..+..++.++.+..|+...... .......+.....
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~ 288 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVL 288 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEE
Confidence 434444 788999999988787776 344333321 214555445677788899999999875211 1333322222233
Q ss_pred eeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee--cCCc-eeecCcccccCCCeEEEE-eeCCeEEEEeCCCCcEEEE
Q 003331 649 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR--TGGP-IFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~--~~~~-~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~tG~~~w~ 723 (829)
...+.+....+..++.++.+..++ .++....... .... +....+ . .....+..+ ..++.+..|+.........
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 344444566777777777777788 6665544433 2211 222211 1 111345555 4667777788776663332
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
........... ..........+..++.+.+|+....
T Consensus 367 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 367 LEGHSNVLSVS------------FSPDGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred ecCCceEEEEE------------ECCCCCEEEEecCCCceEEEecccC
Confidence 22222111100 0011112223567888999987754
No 329
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00063 Score=71.52 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=135.0
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..+..|..|+.+|.|..|...||+++|++.+.+.+. ++.+.+.... |.+...+..+..+|..-|..+-...+......
T Consensus 410 p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred CCcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 356788889999999999999999999998887553 4555554432 33334455577777766633322111111111
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-----eEEEeeccCCcccccceeecCCCEEEEEec---CCeEEEEEccCCCc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-----RCVYKLPCGGSIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPF 634 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-----~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g 634 (829)
.|.-.. .++.+..|....- .+.-.+. ....+........++++.+... +..+++..+.. .
T Consensus 489 ~~~~~~---------p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK--~ 556 (733)
T KOG0650|consen 489 APNESE---------PDAAVVTWSRASLDELEKGVCIVIK-HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK--R 556 (733)
T ss_pred CCCccC---------CcccceeechhhhhhhccceEEEEe-cCCccceeeeecCCceEEEeccCCCcceEEEEeccc--c
Confidence 111110 1112222322110 0011111 1112233334444555544332 22355555443 2
Q ss_pred eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 635 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 635 ~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
+.+--+...........+.+..-++++++. ..|..|| ..+.++-+..++....++..+. ..+++|++|+.++.+..+
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNLILGSYDKKMCWF 634 (733)
T ss_pred cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeEEEecCCCeeEEE
Confidence 221111111222234445556678888875 5788888 5555554444444444443322 246789999999999999
Q ss_pred eCCCCcEEEE-EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 714 EQESGNLLWE-YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 714 d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
|.+-+..-|+ +..+........+.. .=.++++|+.||.++++-.
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~-----------ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHK-----------RYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcc-----------ccceeeeecCCCcEEEEee
Confidence 9875543332 223333222222221 1346788888899888743
No 330
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.007 Score=66.19 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=116.5
Q ss_pred EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.|+.+|...+... .+..+......|.+++++..|.+.+. +..++.+|..+|+........+ ....+.+++++..|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEE
Confidence 6888885544332 23334445667888887776665432 3469999999887654333322 23457788877777
Q ss_pred EEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCcee
Q 003331 616 YVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIF 688 (829)
Q Consensus 616 ~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~ 688 (829)
++. +.+| .|+.+|.++ |+... ..........+.++++++.+++.+..+ .|+.+| .+|+.. +....+...
T Consensus 258 a~~~~~~g~~~I~~~d~~t--g~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLAS--GQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCC--CCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 765 3344 599999886 54432 222222335667778888887766543 577888 555443 222222111
Q ss_pred ecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc---
Q 003331 689 AGPCTSFALPSQVLICSRN---GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS--- 762 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~--- 762 (829)
..+.... .+..|++.+.+ ..|+.+|..+|+..- +. .......+. ..+++..+++.+.++.
T Consensus 334 ~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt-~~~~~~~p~-----------~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 334 QDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT-DTFLDETPS-----------IAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred cCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE-eC-CCCCCCCce-----------ECCCCCEEEEEEcCCCceE
Confidence 1222221 13345554432 358889998887542 11 111111111 2334777777776664
Q ss_pred EEEEEee
Q 003331 763 IHILRVN 769 (829)
Q Consensus 763 l~~~d~~ 769 (829)
+++++.+
T Consensus 400 l~~~~~~ 406 (429)
T PRK03629 400 LNLVSTD 406 (429)
T ss_pred EEEEECC
Confidence 5666654
No 331
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.89 E-value=0.0003 Score=72.01 Aligned_cols=183 Identities=10% Similarity=0.051 Sum_probs=117.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPV 565 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~ 565 (829)
-++..|..++.|..||++...+....+.+...+..+.+...+.+|..++..|.|.....+|+..--.|..+ +...--.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 46777778889999999844333333334333334444445567888888899999999998776666554 33221122
Q ss_pred eec-CCCEEEEeccCCeEEEEEcCCCeEEEeec-cCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeecc
Q 003331 566 VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLP-CGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 566 ~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+.. ..-.+.+++++|.+..||.....++..+. .+......+++.+.+..|+ ..+.|..|+.||... -+..-....
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s--~~s~~~l~y 249 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS--QASTDRLTY 249 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc--ccccceeee
Confidence 222 23456678899999999977666654432 2344455566666455444 455688999999764 222222222
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
. ..+.+.++..++-++.+|+..|.|+.||
T Consensus 250 ~-~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 250 S-HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred c-CCcceeeecCCceEEEeecCCceEEEEe
Confidence 2 2346778888888899999999999999
No 332
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.88 E-value=0.0012 Score=63.87 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=145.1
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-----------C---CeE-------
Q 003331 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-----------N---YRC------- 592 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-----------t---g~~------- 592 (829)
.+.|.+-..|..++|+++-+|..+.....+..+...+..+.+++.|+.-..|... + ++.
T Consensus 166 ASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 166 ASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred cccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 3456777888889999988887665444455566666777788877765555311 0 000
Q ss_pred -------------------EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeee
Q 003331 593 -------------------VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCIT 653 (829)
Q Consensus 593 -------------------~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~ 653 (829)
+-.+..+..+....-.-..++.++.+++|.+-..||.++ |+.+.....+.......+-.
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET--GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc--CceeccccCcchhccccccC
Confidence 000000000111011111245567788888888899888 87776554443333333333
Q ss_pred ecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCcc
Q 003331 654 SANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPI 730 (829)
Q Consensus 654 ~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~ 730 (829)
+....++..+.|.++..|| ... .-+-.++.......+ +.+..++.+..|+.|.+|..||.++-+ .+-++...+++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS--~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~ 401 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS--VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA 401 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeE--EEEecCCceeecCCCceEEEeeeccccCcceeeecCCcc
Confidence 4455666667777777777 421 111122221111111 123447789999999999999987643 35555555544
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE----CCE
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI----GGR 806 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~~~ 806 (829)
....... ....|.+.-++..|.+||.+.......-.+. -.-.-.++.+.... -..
T Consensus 402 NRvavs~------------g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts---------RqgHrRMV~c~AW~eehp~cn 460 (481)
T KOG0300|consen 402 NRVAVSK------------GHPIIAIPHDNRQVRLFDLNGNRLARLPRTS---------RQGHRRMVTCCAWLEEHPACN 460 (481)
T ss_pred ceeEeec------------CCceEEeccCCceEEEEecCCCccccCCccc---------ccccceeeeeeeccccCcccc
Confidence 3322111 1447778888888999998744221110000 00011122221111 157
Q ss_pred EEEeeeCCeEEEEecccc
Q 003331 807 VFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 807 l~vg~~~g~l~~~d~~tg 824 (829)
||.+..|..+..|+.++-
T Consensus 461 LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 461 LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeEeccc
Confidence 888888888888887654
No 333
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.87 E-value=0.004 Score=70.57 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=97.1
Q ss_pred eceEEeeCCcEEEEEE--eCCEEEEEEcCCC------------cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEE
Q 003331 520 CSAAVLADFSQVVVGC--YKGKIYFLDYLTG------------DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYAL 585 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~--~dg~l~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~ 585 (829)
.++.+.+++..+..|+ .|+++.+|+.+-= +.+-+...+.....+.-+.+++.++++|++|..+..|
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 3556666666666666 5666666653210 0111112222223333467788899999999988888
Q ss_pred EcCC---Ce-----------EEEe----eccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 586 DFRN---YR-----------CVYK----LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 586 d~~t---g~-----------~~w~----~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
.... +. ..|+ +..+..-......++++..+..++.|+.|..||..+ ++.+-....+....
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLV 174 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc--ceeeeeeecccccc
Confidence 8662 11 1233 222334445556666567777888999999999888 76666666555555
Q ss_pred eeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 648 ASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
-...+.+.+.++..-+.|..|.+|+
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEE
Confidence 5667777888888889999999998
No 334
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.00012 Score=79.05 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=94.6
Q ss_pred CCeEEEEecCCCcEEEEECCC---CcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHSHKFICADAKR---SSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.++.|...+.+|.|.+||+.. .+.+-.|.-+.+......+.. .-..|+.|+.||.|.+||.+..+-.-++....+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 466788888899999999865 333334455555544555543 3357889999999999998877766555443322
Q ss_pred eeeeeeec-CCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 561 KCQPVVDA-PRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 561 ~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.--..+.+ .+..+..+..+|.|..||+..- ++..++..+.......-..++...|..|+.|+.+.+||..+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 21222333 2445556667788999998642 23333444444444455566566777788899999999764
No 335
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.85 E-value=0.0041 Score=68.29 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=106.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeC--CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYK--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+......... ...++.++++++.+++. +.+ ..||.+|..+++..... ........+.+.+++..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCE
Confidence 479999999987654333332 23357788888777654 333 35999998888654322 22223334556666666
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++.+.. ..||.+|..+++... ....+.....+.+++++..+++.+.++ .|+.+|+.+ +....... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~--~~~ 366 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTD--TGL 366 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccC--CCC
Confidence 7665433 269999988876543 222333445667777677888777655 788899876 43322111 111
Q ss_pred eeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEe
Q 003331 647 FASLCITSANRHVICCLVDG---HVVALDSSGSIIWRC 681 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~ 681 (829)
...+.+.++++.+++.+.++ .++.++.+|+.....
T Consensus 367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 367 DESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 23445666777777766543 233334566655444
No 336
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0083 Score=65.77 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
..|+.+|.. |........+......|.+++++..|++.+.+ ..|+.||..+|+........+ ....+.+++++..
T Consensus 184 ~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCE
Confidence 578888864 43333333344455678888887777766543 369999999886543332222 2335777777777
Q ss_pred EEEEe-cCCe--EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CC--eEEEEc-CCCCEEEEeecCCce
Q 003331 615 LYVAS-TSGR--LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DG--HVVALD-SSGSIIWRCRTGGPI 687 (829)
Q Consensus 615 l~v~t-~~g~--l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g--~i~~~d-~~g~~~w~~~~~~~~ 687 (829)
|+++. .+|. |+.+|.++ ++.. ...........+.+.+++..+++.+. +| .|+.++ ..+.... .....
T Consensus 262 La~~~~~~g~~~Iy~~d~~~--~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l~~~~-- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANG--GTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-VGGRG-- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCC--CCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ecCCC--
Confidence 77654 4553 67777765 4432 22222223356677778877776653 34 355555 3333321 11111
Q ss_pred eecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 688 FAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 688 ~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
.. +.... .+..|++.+.+ .++.+|..+|+....... .....+ +..+++..+++++.+|...+|+
T Consensus 336 ~~-~~~Sp-DG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~-----------~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 336 YS-AQISA-DGKTLVMINGD-NVVKQDLTSGSTEVLSST--FLDESP-----------SISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CC-ccCCC-CCCEEEEEcCC-CEEEEECCCCCeEEecCC--CCCCCc-----------eECCCCCEEEEEEcCCCceEEE
Confidence 11 11111 23456666554 588899998876422111 111111 1233477888888888776665
Q ss_pred e
Q 003331 768 V 768 (829)
Q Consensus 768 ~ 768 (829)
.
T Consensus 400 ~ 400 (429)
T PRK01742 400 L 400 (429)
T ss_pred E
Confidence 4
No 337
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.81 E-value=0.0043 Score=68.14 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=125.7
Q ss_pred cEEEEECCCC-cEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE--EEEEec----CCeeeeeeeeec
Q 003331 497 KFICADAKRS-SVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI--YWTFQT----CGEVKCQPVVDA 568 (829)
Q Consensus 497 ~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~----~~~~~~~~~~~~ 568 (829)
.++.||.++- ++.-.+.....+. +..+.+ +...++.|+++|.|..||...+.. .+.... +.......+...
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~-~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVT-CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEecCCcee-EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 5777776553 3333344444332 333433 455788899999999999887765 443322 111111222221
Q ss_pred --CCCEEEEeccCCeEEEEEcCCCeE------EEeec-cC----C--cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 569 --PRQLIWCGSHDHNLYALDFRNYRC------VYKLP-CG----G--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 569 --~~~~i~~gs~~g~l~~~d~~tg~~------~w~~~-~~----~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+..++.++.||.|..|+.+.-.. .-... .+ . ...+.-....+....++||..|.|+.-+....+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 224488888899999997653211 00000 00 0 011111122234778999999998875544311
Q ss_pred ceE------EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEeecCCc-eeecCcccccCCCeEEEE
Q 003331 634 FHT------LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCRTGGP-IFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 634 g~~------~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~ 704 (829)
-.. .-.+..+.....+....+-...++..+.|-++..|. . .-.++..+..... ++... .+......++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va-WSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA-WSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE-EcCcCceEEEEE
Confidence 111 101111111112222222233344444466676666 2 3333322221111 11111 111112235556
Q ss_pred eeCCeEEEEeCCCCc--EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 705 SRNGSIYSFEQESGN--LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 705 t~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..+|.|..||..... +.-+.+....+. ........+..+.+|...|.+++++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l-----------~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPAL-----------TRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCccccccccccc-----------ceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 668999999975322 222222221111 1111233478899999999999998863
No 338
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.007 Score=61.82 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=112.4
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee--c
Q 003331 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--P 597 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~ 597 (829)
+++..++.+ .+|+.-..+.|+.||+.+|+.. .+..++.+.+...++ .++.|++.. ..++.++.+++..+-.+ .
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 344444444 4666667889999999888554 233444443333333 455665553 34667776666552221 1
Q ss_pred cCC---cccccceeecCCCEEEEEecC------------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003331 598 CGG---SIFGSPAIDEVHDVLYVASTS------------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 598 ~~~---~~~~~~~~~~~~~~l~v~t~~------------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
..+ ...+...++. ++.+|+++.. |.||.+++. |...-.....-......+++++++.+|+.
T Consensus 105 ~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 105 EDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 111 1223334444 5889998766 457777764 22222221111122456788888888887
Q ss_pred ee-CCeEEEEc-C--CCCEE----EEeecCCceeecCcccccCCCeEEEEeeCC--eEEEEeCCCCcEEEEEecCCcccc
Q 003331 663 LV-DGHVVALD-S--SGSII----WRCRTGGPIFAGPCTSFALPSQVLICSRNG--SIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 663 ~~-~g~i~~~d-~--~g~~~----w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
.. .+.++.++ . +|.+- +......+ -...-...+.+|.+|+....+ .|.+|+++ |+++-.+..+.....
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~-G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEP-GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCC-CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 54 47777776 3 23221 11111000 001112356789999765553 89999988 999988888754333
Q ss_pred c
Q 003331 733 S 733 (829)
Q Consensus 733 ~ 733 (829)
.
T Consensus 259 ~ 259 (307)
T COG3386 259 N 259 (307)
T ss_pred c
Confidence 3
No 339
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.80 E-value=0.0026 Score=72.75 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=135.4
Q ss_pred CCCeEEEEecCCCcEEEEECCC--Cc---EEE--EEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC--CcEEEE
Q 003331 484 DSDIYLFVGSHSHKFICADAKR--SS---VLW--EIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT--GDIYWT 553 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~t--g~---~~w--~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t--G~~~w~ 553 (829)
++......||.||.|.+||... |+ .+- ++. .+.++. .......+..+.+++.||.|..++..- ++.+--
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~-~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE-KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE-EEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 3446777899999999999753 11 111 122 223332 334445667888999999887776543 221110
Q ss_pred -------EecCCeeeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecCCCEEEEEecCC
Q 003331 554 -------FQTCGEVKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 554 -------~~~~~~~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
....+.+...-.+ ....-.+..++..+.+..||..+..-.|+.+.. ....++.++++....+.+||..|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 0111222221111 112225666778889999999998889987653 34667788888677888999999
Q ss_pred eEEEEEccCCCceEEEeeccCCcce-eeeeeeec-CCE-EEEEe-eCCeEEEEc-CCCCE---EEEeecCCceee--cC-
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAF-ASLCITSA-NRH-VICCL-VDGHVVALD-SSGSI---IWRCRTGGPIFA--GP- 691 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~-~~~-l~~~~-~~g~i~~~d-~~g~~---~w~~~~~~~~~~--~~- 691 (829)
.+.+||+.=..--..|.+....+.. ...++... ... +..+. ..+.+..|+ .+|.. +|.- .+.+.++ .|
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPS 1296 (1431)
T ss_pred eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchhhhccc
Confidence 9999998752223456665544332 11111111 122 22333 456788888 66643 3433 1111110 01
Q ss_pred -------------cccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 692 -------------CTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 692 -------------~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+.....++.++.|..|..|..||..+.+.
T Consensus 1297 ~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1297 NDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11133456788888899999999776544
No 340
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.80 E-value=0.026 Score=68.47 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=128.7
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCc--------------eeeceEEeeCCcEEEEEEe-CCEEEEEEcCCC
Q 003331 485 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGR--------------IECSAAVLADFSQVVVGCY-KGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~--------------~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG 548 (829)
.++.||+.. .+++|..+|.. |+.+-.+...+. .-...++..+++.||+... ++.|..+|..++
T Consensus 578 ~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~ 656 (1057)
T PLN02919 578 LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE 656 (1057)
T ss_pred CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC
Confidence 467788875 46789999975 555433322100 0123455556677888754 467888998777
Q ss_pred cEEEEEecCC--------------e-e--eeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeecc------CC----
Q 003331 549 DIYWTFQTCG--------------E-V--KCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPC------GG---- 600 (829)
Q Consensus 549 ~~~w~~~~~~--------------~-~--~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~------~~---- 600 (829)
.+.- +...+ . . .....+++.++.+|+.. .++.|+.||..+|...-.... .+
T Consensus 657 ~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~ 735 (1057)
T PLN02919 657 TVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGT 735 (1057)
T ss_pred EEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccc
Confidence 6532 21100 0 0 11234555567788764 467899999988765321100 00
Q ss_pred ----cccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeecc-----------C---C-------cceeeeeeee
Q 003331 601 ----SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHEL-----------E---V-------PAFASLCITS 654 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~-----------~---~-------~~~~s~~~~~ 654 (829)
..-..++++++++.+|++.. ++.|..||+++ +...+.... + . .......+..
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 00112456666677887754 57899999886 543322110 0 0 0012233443
Q ss_pred cCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCc----------eeecCc-ccccCCCeEEEEe-eCCeEEEEeCCCCcE
Q 003331 655 ANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGP----------IFAGPC-TSFALPSQVLICS-RNGSIYSFEQESGNL 720 (829)
Q Consensus 655 ~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~----------~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~tG~~ 720 (829)
+ +.+|++. .++.|..+| .++.+......+.. .+..|. +..+.+|.+|+.. .++.|..||..+++.
T Consensus 814 d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 814 D-GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred C-CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3 4566654 567899999 66665543322211 112221 2344567788874 577899999998875
No 341
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.79 E-value=0.046 Score=59.66 Aligned_cols=267 Identities=16% Similarity=0.152 Sum_probs=151.7
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEE-EEecCCeee
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYW-TFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w-~~~~~~~~~ 561 (829)
.+..++.++. ++.+..|+..+++....+..+........+.+++..+.++ +.|+.+..||..++.... .+..+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 245 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce
Confidence 3446666664 8999999998888877776655544555666665535555 778999999988888776 344333322
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+...+..+..++.++.++.||...... ......+........+.++...+..++.++.+..|+..+ .......
T Consensus 246 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~ 322 (466)
T COG2319 246 -VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--GKLLSSL 322 (466)
T ss_pred -eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--CceEEEe
Confidence 224555556777888999999999886654 444422222233334444456677777777778887765 4433333
Q ss_pred c--cCCcceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEE-EEeeCCeEEEEeC
Q 003331 641 E--LEVPAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~--~~~~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~-~~t~~g~l~~~d~ 715 (829)
. ..........+..+...+..+ ..++.+..++ ..............+...... . +..+. .+..++.+..|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS-P--DGRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEEC-C--CCCEEEEecCCCceEEEec
Confidence 2 222222333331112455555 4566677777 444433333222221111111 1 11222 2567788999998
Q ss_pred CCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 716 ESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 716 ~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
............ ..+...... ..+..+..+..++.+..|+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 400 STGSLLRNLDGHTSRVTSLDFS------------PDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ccCeeeeeccCCCCcEEEEEEC------------CCCcEEEEecCCCcEEEEecc
Confidence 887776554443 222211111 124555556778888888766
No 342
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=97.79 E-value=2.9e-05 Score=52.25 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=28.0
Q ss_pred cccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCC
Q 003331 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR 505 (829)
Q Consensus 463 ~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t 505 (829)
+++|+++++..+.++|++ .++.||+++.+|.|+++|++|
T Consensus 2 ~~~W~~~~~~~~~~~~~v----~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAV----AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS---S--EE----CTSEEEEE-TTSEEEEEETT-
T ss_pred ceeEEEECCCCcCcCCEE----ECCEEEEEcCCCEEEEEeCCC
Confidence 468999999999999998 789999999999999999875
No 343
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.77 E-value=0.0056 Score=67.37 Aligned_cols=175 Identities=13% Similarity=0.181 Sum_probs=104.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+........+ ....+.++++++.+++.. .++ .||.+|..+|+... ..........+.+.+++..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCE
Confidence 369999999887654322222 233578888888776543 333 69999999887643 2222333445667777777
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++.+.. ..||.+|..+|+..... ..+.....+.++++++.|++.+.. + .|+.+|+.+ |+....... ..
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~--~~ 375 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDT--SL 375 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCC--CC
Confidence 7766542 36999999888754322 223333456677777787776543 2 478888876 543322111 11
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEcCCCCE
Q 003331 647 FASLCITSANRHVICCLVD---GHVVALDSSGSI 677 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d~~g~~ 677 (829)
...+.+++++..+++.+.. ..++.++.+|..
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 2345666777777766543 235556644433
No 344
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.75 E-value=0.003 Score=60.71 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=129.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceE--EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA--VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~--~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.|....+|.|+.+.+||.+|-+..-.|+.++.++..+. ++..--.|.+|+.+-.|..-|.++|..-.+...+..-.-
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 566666778899999999999998888888887654221 111223577788888899999999998877765543222
Q ss_pred eeeeecC-CCEEEEeccCCeEEEEEcCCC-eEEEeeccC--------------CcccccceeecCCCEEEEEecCCeEEE
Q 003331 563 QPVVDAP-RQLIWCGSHDHNLYALDFRNY-RCVYKLPCG--------------GSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 563 ~~~~~~~-~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~--------------~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
+.-+.+. +-.+++|+.||.+..||+..- .+....+.+ ...+...+...++..++..+.+..+..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 2333333 345778999999999998642 222222111 112223344444555666666677888
Q ss_pred EEccCCCceEEEe-e-cc-----CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC
Q 003331 627 ISVKALPFHTLWL-H-EL-----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP 698 (829)
Q Consensus 627 ~~~~~~~g~~~w~-~-~~-----~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~ 698 (829)
|+..+ |+---. + +. ..+.+. .. +.+.+.+..--.+++++.++ -.|..+-..+....-.... .....-
T Consensus 273 wn~~~--G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~-~~~~~f 347 (397)
T KOG4283|consen 273 WNMES--GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA-AYRPDF 347 (397)
T ss_pred eeccc--CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE-eecCch
Confidence 88766 431110 0 00 001111 11 11222222223458888898 7787765444432211111 111112
Q ss_pred CeEEEEeeCCeEEEEeC
Q 003331 699 SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~ 715 (829)
...+.|..|+.++.|.+
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 35778888888888865
No 345
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.74 E-value=0.0084 Score=58.74 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeecc---CCccccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPC---GGSIFGS 605 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---~~~~~~~ 605 (829)
.+++|++-|.|+.+|..+++....+..++......-+. ...+.|+.+|.|..|+.||++++.++-.+-. +..-.-+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 57777788999999999999887776655322222222 2346889999999999999999999877643 1222334
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.-++.+++++..++.|..|..|+++.
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecCh
Confidence 44555667888888899999998774
No 346
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=97.73 E-value=7.6e-05 Score=50.17 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=28.0
Q ss_pred CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 548 GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 548 G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
|+++|+++.++.+..+|++.+ +.||+++.+|.++++|++|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~--g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAG--GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECT--SEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEEC--CEEEEEcCCCEEEEEeCCC
Confidence 789999999988888888764 8999999999999999875
No 347
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0034 Score=66.40 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=114.1
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeece-----------------------EEeeCCcEEEEEEeCCEEEEEE
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA-----------------------AVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~-----------------------~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+....+.+|.+..||..++++.-.|....+...+. ..+.+-..++.|+..|.+..|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 34445678899999998888765553221110000 1122334577899999999999
Q ss_pred cCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 545 YLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 545 ~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
...|++.|++.++. ..+........-+.||.++.|+.+..|+.++++.+..........++.++.++++.+.+++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 99999999987543 2233333344567899999999999999999998877777777888889988767777765 5
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeee
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
.|-.||.++ ++.+-++..+.....+..+
T Consensus 165 ~ik~~~~~~--kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 165 QIKVLDIET--KEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred eEEEEEccC--ceEEEEecCCCcceEEEEE
Confidence 699999998 8888877766554444443
No 348
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.69 E-value=6.3e-05 Score=49.75 Aligned_cols=36 Identities=42% Similarity=0.696 Sum_probs=31.0
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+.+|+++.+|.|+++|++||+++|+++....+.+.|
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p 36 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSP 36 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCB
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCc
Confidence 368999999999999999999999999877665544
No 349
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.67 E-value=0.0073 Score=60.59 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=105.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEE-------EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w-------~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
.+..|..||.|..+..|..-.+-... .+..+.+-...+...+ ..+.+...+.|..+..||..||+.+-+...
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h 172 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH 172 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCC
Confidence 46678888999999999854432221 1222222222222222 123466667799999999999999888774
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec----CCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST----SGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~----~g~l~~~~~~~ 631 (829)
++. ..+..+..++..+.+.+.|..|+.||+.+|++++.-..+...-.. .++-. ++.++.... +.++-.||+++
T Consensus 173 pd~-i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 173 PDM-VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCe-EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCccc
Confidence 444 445566667788888899999999999999999987443322221 12222 233443332 33455566554
Q ss_pred CCceEEEeeccCC-cceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003331 632 LPFHTLWLHELEV-PAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 632 ~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
.. +.+-..++.. +...-+-..++.+.+|++.. |+.|..|.
T Consensus 251 l~-eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 251 LE-EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cc-CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 10 1111111111 11122334445667776654 66676666
No 350
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.028 Score=51.86 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=122.0
Q ss_pred CeEEEEecCCCcEEEE--ECCCCcEE---EEEEcCCceeeceEEeeC---CcEEEE--EEeCCEEEEEEcCCCcEEEEEe
Q 003331 486 DIYLFVGSHSHKFICA--DAKRSSVL---WEIKLEGRIECSAAVLAD---FSQVVV--GCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~--d~~tg~~~---w~~~~~~~~~~~~~~~~~---~~~v~v--g~~dg~l~~~d~~tG~~~w~~~ 555 (829)
+..|..|+.|..|..+ |..|.+.. -+++.++...-..++.++ ++.+.+ |..|..||.-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 5567778888766544 44443211 234555543334444432 233333 3446788988988888776655
Q ss_pred cCCe-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CC---cccccceeecCCCEEEEEecCCeEEEE
Q 003331 556 TCGE-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GG---SIFGSPAIDEVHDVLYVASTSGRLTAI 627 (829)
Q Consensus 556 ~~~~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~ 627 (829)
.+.. +.. .+.-.+-++..|+.|..++.||..-..++..... ++ ....+.++++.+..+..|-.+.....|
T Consensus 181 ghtghila--lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILA--LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEE--EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 4332 222 2232345666789999999999887666665433 12 344556677756666677778889999
Q ss_pred EccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEE
Q 003331 628 SVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSII 678 (829)
Q Consensus 628 ~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~ 678 (829)
|+.. |..+.++........+..+++..-++..++++..|..-|-.|.+.
T Consensus 259 dirg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 259 DIRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred EeeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 9997 888888877666666777777777888999998888877556554
No 351
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.023 Score=63.15 Aligned_cols=271 Identities=14% Similarity=0.176 Sum_probs=148.6
Q ss_pred ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCC---cEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 476 ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF---SQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 476 ~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~---~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
-+|.+. +.+..++++.+. ..|..|...||..+-.+..+.....+..+.... ..+|+.+.+|.|..||-..++++.
T Consensus 19 ~~~avf-SnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 19 KSPAVF-SNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred eccccc-ccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 344443 334556666555 469999999998876544333222233332221 467899999999999999999999
Q ss_pred EEecCCeeeee---eeeecCCCEEEEeccCC-eEEEEEcCCCeEEEeeccC------C-----cccccceeecCCCEEEE
Q 003331 553 TFQTCGEVKCQ---PVVDAPRQLIWCGSHDH-NLYALDFRNYRCVYKLPCG------G-----SIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 553 ~~~~~~~~~~~---~~~~~~~~~i~~gs~~g-~l~~~d~~tg~~~w~~~~~------~-----~~~~~~~~~~~~~~l~v 617 (829)
++..+..+... |...+....+|.+..+. .++....+..+....+... + ...-.++.+...+.+..
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 88776544322 22222223344443332 2222222222221111110 0 00112333333343333
Q ss_pred EecCCeEEEEEccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCC---------CEEEEee
Q 003331 618 ASTSGRLTAISVKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALDSSG---------SIIWRCR 682 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g---------~~~w~~~ 682 (829)
...+-.++.|+..+ +. |.... +.-.+....+++.+..+..+..+|.|..|...| .+.|+..
T Consensus 177 i~~~~~~~~~~v~~--~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPK--HT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEeeeEEEEEecc--cc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 33344577777665 22 22211 111124456777788888888899999887222 1235532
Q ss_pred -cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 683 -TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 -~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+..-.++. .+..+|.|...|-+..|...|++...--..++++....... ++.+..+...|.
T Consensus 253 ~V~~L~fS~------~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~------------ds~~~sl~~~DN 314 (792)
T KOG1963|consen 253 EVNSLSFSS------DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP------------DSDLYSLVLEDN 314 (792)
T ss_pred ccceeEEec------CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC------------CCCeEEEEecCc
Confidence 11112222 35689999999999999999988543333445443332222 266677777888
Q ss_pred cEEEEEeec
Q 003331 762 SIHILRVNL 770 (829)
Q Consensus 762 ~l~~~d~~~ 770 (829)
.|..+...+
T Consensus 315 qI~li~~~d 323 (792)
T KOG1963|consen 315 QIHLIKASD 323 (792)
T ss_pred eEEEEeccc
Confidence 898887643
No 352
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.64 E-value=0.00022 Score=72.49 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=120.1
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
..++..+++|+..|+|.++|-.|+++...+.....+...-.+.. ...+.......+|+||-+ |..+.........
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn--eq~~AVAQK~y~yvYD~~---GtElHClk~~~~v 212 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN--EQFFAVAQKKYVYVYDNN---GTELHCLKRHIRV 212 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc--hHHHHhhhhceEEEecCC---CcEEeehhhcCch
Confidence 33567788899999999999999998887766444333222322 334444455668888855 6666555433222
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
....+.+..=.+..++..|.+...| ++|+++-.+.++..-..... ..-.+..+-+|..+|.|..|.+...+++-++.
T Consensus 213 -~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~-qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 213 -ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK-QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred -hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh-cCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 1222333333444556678888888 99998876665432211111 01124567788889999999999888877666
Q ss_pred cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 726 VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
++....++..++.. +.+++....|..+.+||...
T Consensus 291 cH~g~V~siAv~~~-----------G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRG-----------GRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hcCCCcceEEECCC-----------CcEEeecccccceeEeeecc
Confidence 55554455555542 78888888999999999974
No 353
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0074 Score=56.65 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=123.4
Q ss_pred CCeEEEEecCCCcEEEEECCCC---cEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEe----
Q 003331 485 SDIYLFVGSHSHKFICADAKRS---SVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---- 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~---- 555 (829)
.+.+|...+.|+.|..|..... +.+-++..+......+.... .|+.|...++||.+..|.-++| .|+..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~ 99 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHA 99 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhh
Confidence 4678888889999998886543 34444555555555556554 5678888999999999997777 66522
Q ss_pred cCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEee----cc---C-Ccccccceeec----------CCCEE
Q 003331 556 TCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKL----PC---G-GSIFGSPAIDE----------VHDVL 615 (829)
Q Consensus 556 ~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~----~~---~-~~~~~~~~~~~----------~~~~l 615 (829)
.+.....+..+. +.+-.|.+++.||.|..++.++- -.|.. .+ + ..+.-.|...+ .-.++
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 222222222222 23456788999999988876543 11211 11 1 01111111100 01457
Q ss_pred EEEecCCeEEEEEccCCCceEEEeecc----CCc----ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLHEL----EVP----AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 686 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~~~----~~~----~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~ 686 (829)
..|..|+.+-+|+.++ + .|..+. +.. ....+.+......+..++.||.+++|. ..-..-|+...-.+
T Consensus 179 vSgGcDn~VkiW~~~~--~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDS--D--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eccCCccceeeeecCC--c--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 7778888888888776 4 454432 111 112222222345678888999999998 32223466544332
Q ss_pred ----eeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 687 ----IFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 687 ----~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
++.... ...++.+-++..|+.+.+|-
T Consensus 255 f~~~~w~vSW--S~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 255 FPDVVWRVSW--SLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CCcceEEEEE--eccccEEEEecCCcEEEEEE
Confidence 211111 11234555666677777776
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.61 E-value=0.12 Score=53.64 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=102.7
Q ss_pred CeEEEEecCC--CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHS--HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..||.+..+ ..++.+|+.|++...-....+......+++.+...+|.-..+..|+.+|+.|++..-.+..+...+..
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~ 127 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY 127 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc
Confidence 3455555443 47999999999987655543332224556666666544333568999999999987777776655532
Q ss_pred ee-eecCCCEEEEec-----------------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-
Q 003331 564 PV-VDAPRQLIWCGS-----------------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA- 618 (829)
Q Consensus 564 ~~-~~~~~~~i~~gs-----------------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~- 618 (829)
.. +.+.++..++|. ....|+.+|.++|+..-.+... ...+.+.+++.+..+++-
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEe
Confidence 22 223344455441 1246899999999765443322 112222222222222222
Q ss_pred e---c---CCeEEEEEccCCCceEEEeeccCCc--ceeeeeeeecCCEEEEEee-----CCeEEEEc-CCCCEEEEeecC
Q 003331 619 S---T---SGRLTAISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLV-----DGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 619 t---~---~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~l~~~~~-----~g~i~~~d-~~g~~~w~~~~~ 684 (829)
- + +..+..++.+ |...|......+ .....-..+++..+|.-+. +..|..+| .+++..|....+
T Consensus 207 HEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 207 HEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp E-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-
T ss_pred ccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC
Confidence 1 1 2246666644 455555433322 1222334556777666433 22477788 777765543332
Q ss_pred CceeecCcccccCCCeEEEEeeCC-----------------eEEEEeCCCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNG-----------------SIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g-----------------~l~~~d~~tG~~~ 721 (829)
.. +.. ....++.+++|...+ -|+.++.++++..
T Consensus 284 ~~---~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 284 WC---SHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp SE---EEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred ce---eee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 11 110 112366777774321 4566777776653
No 355
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=97.60 E-value=0.00038 Score=57.66 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=54.7
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc----hHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS----SEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
|.+|+|.+||++|.++|++.....+...+......+...++..+.... .+.+.++|++.+++.+.-.. ...++..
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~-~V~lv~~ 79 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRP-EVELVPP 79 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-E-EEEEE-T
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceE-EEEEECC
Confidence 789999999999999999995444444444456677777888775532 34556677777777765432 3344555
Q ss_pred CcccCCCCCCcch
Q 003331 253 DSLPMTSSGKVDY 265 (829)
Q Consensus 253 ~~lP~t~~GKi~r 265 (829)
.+||++ .||..|
T Consensus 80 gtLpr~-~~K~~R 91 (96)
T PF14535_consen 80 GTLPRS-EGKAKR 91 (96)
T ss_dssp T-S----SSSS-S
T ss_pred CCccCC-CCcceE
Confidence 679997 678655
No 356
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.59 E-value=0.046 Score=58.14 Aligned_cols=290 Identities=17% Similarity=0.200 Sum_probs=150.0
Q ss_pred cccccccc--ccccccceEEee-----CCCeEEEEecCCCcEEEEECCCCc-----EEEEEEcCCceee---ceEEee-C
Q 003331 464 ELWKVHME--SCVDASPLVVLK-----DSDIYLFVGSHSHKFICADAKRSS-----VLWEIKLEGRIEC---SAAVLA-D 527 (829)
Q Consensus 464 ~~W~~~~~--~~~~~sp~v~~~-----d~~~~l~igs~~g~l~~~d~~tg~-----~~w~~~~~~~~~~---~~~~~~-~ 527 (829)
.-|+...+ ...+...+.+.+ +....|++||.+|.|..|++..+. .+-+.++...+.. ..-+.. +
T Consensus 8 ewWst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~ 87 (418)
T PF14727_consen 8 EWWSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE 87 (418)
T ss_pred heeeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC
Confidence 34776654 334444444422 345689999999999999986544 3333444433211 100111 1
Q ss_pred CcEEEEEEeCCE--EEEEEcCCCc-----E-----EEEEecCCee--eeeeeeec--CCCEEEEeccCCeEEEEEcCCCe
Q 003331 528 FSQVVVGCYKGK--IYFLDYLTGD-----I-----YWTFQTCGEV--KCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 528 ~~~v~vg~~dg~--l~~~d~~tG~-----~-----~w~~~~~~~~--~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
...+.|-. -.. ||.+-..+|. . +......... .+.-.+.. +...|-+-+.||.|..++.+.-
T Consensus 88 ~~~LaVLh-P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~- 165 (418)
T PF14727_consen 88 DLQLAVLH-PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF- 165 (418)
T ss_pred cceEEEec-CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-
Confidence 11233322 222 3333333333 1 1111111111 11111211 2466777889999999985542
Q ss_pred EEEeeccCCccc-ccceeecCCCEEEEEecCCeEEEEEcc---------------------CCCceEEEeeccCCcceee
Q 003331 592 CVYKLPCGGSIF-GSPAIDEVHDVLYVASTSGRLTAISVK---------------------ALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 592 ~~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~g~l~~~~~~---------------------~~~g~~~w~~~~~~~~~~s 649 (829)
.......+... +..++....+.+++++.+..+.+|... .+.-..-|.+..++....-
T Consensus 166 -~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i 244 (418)
T PF14727_consen 166 -AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDI 244 (418)
T ss_pred -EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEE
Confidence 22333333222 233344445677777777777777521 1112356888887765422
Q ss_pred eeeee--cC-CEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecC-c-ccccCC----CeEEEEeeCCeEEEEeCCCCcE
Q 003331 650 LCITS--AN-RHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP-C-TSFALP----SQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 650 ~~~~~--~~-~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~-~-~~~~~~----~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.++.. .. ..+..| ...+++++.+|.+.|............ . +....+ ..+.+++.++.+..|. +.++
T Consensus 245 ~v~~~~~~~~~IvvLg--er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L 320 (418)
T PF14727_consen 245 QVVRFSSSESDIVVLG--ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTL 320 (418)
T ss_pred EEEEcCCCCceEEEEe--cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeE
Confidence 22221 22 333444 468999998899999887654322111 1 101111 2488999999999995 6789
Q ss_pred EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 721 LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 721 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+|.-+.+....+... ......++.|.+=+.+|.|.+-=..
T Consensus 321 ~WsA~l~~~PVal~v---------~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 321 VWSAQLPHVPVALSV---------ANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred EEecCCCCCCEEEEe---------cccCCCCceEEEEcCCCcEEEEEeC
Confidence 998776433221110 0111226777777778877654443
No 357
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.58 E-value=0.0002 Score=47.35 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=31.8
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
+.+|+++.+|.|+++|.+||+.+|+++......+.|.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 4689999999999999999999999998876665553
No 358
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.58 E-value=0.0079 Score=66.12 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=129.5
Q ss_pred EEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE--EEeeccCC----ccccccee--e
Q 003331 539 KIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC--VYKLPCGG----SIFGSPAI--D 609 (829)
Q Consensus 539 ~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~----~~~~~~~~--~ 609 (829)
.++.|+.++- ...-.+.....+.+......+...+..|+++|.|..||...+.. .+...... ......+. .
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 4677776553 44444555555544433333457788899999999999887765 34332211 11111111 1
Q ss_pred cCCCEEEEEecCCeEEEEEccCCCc----eEEEeecc-C---Ccce--eeeee-eecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 610 EVHDVLYVASTSGRLTAISVKALPF----HTLWLHEL-E---VPAF--ASLCI-TSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 610 ~~~~~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~-~---~~~~--~s~~~-~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
..+..++.++.||.|..|+.+...- ...-.... + .... .+..+ ..+....++|+..|.|+.-+ ...+.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 2124478888899999997653110 00000000 0 0000 11122 12456788999999998855 32211
Q ss_pred ----EEE----ee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCC-CCcEE-EEEecCCcccccccccccccccccc
Q 003331 678 ----IWR----CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLL-WEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 678 ----~w~----~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~-tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+++ +. ..+++.+....++ ...++..+.|.++..|... .-.++ |.......+....+..
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp--------- 451 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP--------- 451 (555)
T ss_pred cccccccccccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcC---------
Confidence 111 11 1122322222222 2245555558888888755 33333 3222222222111111
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecc
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
..-..++++..+|.|.+||+.....+-. .+.+....+...... .+..|.+|...|.++.|++.
T Consensus 452 --trpavF~~~d~~G~l~iWDLl~~~~~Pv-----------~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 452 --TRPAVFATVDGDGNLDIWDLLQDDEEPV-----------LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred --cCceEEEEEcCCCceehhhhhccccCCc-----------ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1245677788899999999874421111 011111111111111 24578889999999999874
No 359
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.56 E-value=0.023 Score=58.43 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=104.5
Q ss_pred cccceEEeeCCCeEEEEec-CC--CcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003331 475 DASPLVVLKDSDIYLFVGS-HS--HKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 475 ~~sp~v~~~d~~~~l~igs-~~--g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
.++|+++ +++||.-| ++ |.||..|+. |+-+.+ .+..+-. .--...||+.++.. ..|.||.+|++|-++
T Consensus 228 vS~PmIV----~~RvYFlsD~eG~GnlYSvdld-GkDlrrHTnFtdYY--~R~~nsDGkrIvFq-~~GdIylydP~td~l 299 (668)
T COG4946 228 VSSPMIV----GERVYFLSDHEGVGNLYSVDLD-GKDLRRHTNFTDYY--PRNANSDGKRIVFQ-NAGDIYLYDPETDSL 299 (668)
T ss_pred cCCceEE----cceEEEEecccCccceEEeccC-CchhhhcCCchhcc--ccccCCCCcEEEEe-cCCcEEEeCCCcCcc
Confidence 3578885 66677655 44 589999986 554433 2222211 22334466666554 368899999988766
Q ss_pred EEEEecC--C------eeeeeee-----eec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE
Q 003331 551 YWTFQTC--G------EVKCQPV-----VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 551 ~w~~~~~--~------~~~~~~~-----~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~ 616 (829)
.. .+.+ - .....|. ++. +++.+..-| .|..+..+...|-.+..-..++ +.-.- +..+...+.
T Consensus 300 ek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~-VrY~r-~~~~~e~~v 375 (668)
T COG4946 300 EK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGG-VRYRR-IQVDPEGDV 375 (668)
T ss_pred ee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCc-eEEEE-EccCCcceE
Confidence 43 2222 0 0000110 011 223333333 4455555554443332211111 11111 111235788
Q ss_pred EEecCC-eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 617 VASTSG-RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 617 v~t~~g-~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
+|+.+| .+-++|..+ |+..- ...+-....+..+.++++.+.++.....+.++| .+|+..
T Consensus 376 igt~dgD~l~iyd~~~--~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 376 IGTNDGDKLGIYDKDG--GEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EeccCCceEEEEecCC--ceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 899988 788899886 65433 322223335667777888899999889999999 888764
No 360
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.56 E-value=0.066 Score=65.06 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=126.5
Q ss_pred EEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCe--------------eeeeeeeecCCCEEEEecc-CCeEEEEE
Q 003331 523 AVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE--------------VKCQPVVDAPRQLIWCGSH-DHNLYALD 586 (829)
Q Consensus 523 ~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~--------------~~~~~~~~~~~~~i~~gs~-~g~l~~~d 586 (829)
++...++.+|+.. .++.|..+|. +|+.+-.+...+. .....+++.+++.||++.. ++.|..+|
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 4444456677764 4667999995 5665433322110 0122345555677888754 46788899
Q ss_pred cCCCeEEEeecc--------CC-----ccccc---ceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeecc------C
Q 003331 587 FRNYRCVYKLPC--------GG-----SIFGS---PAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL------E 643 (829)
Q Consensus 587 ~~tg~~~w~~~~--------~~-----~~~~~---~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~------~ 643 (829)
..++...-.... ++ ..... .+++++++.+|++. .++.|+.+|..+ |...-.... .
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~--g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD--GVTRVFSGDGYERNLN 730 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC--CeEEEEecCCccccCC
Confidence 887764321110 00 01122 35565567888875 457789999876 443211100 0
Q ss_pred C--------cceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec-----------C---C----ceeecC-ccc
Q 003331 644 V--------PAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT-----------G---G----PIFAGP-CTS 694 (829)
Q Consensus 644 ~--------~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~-----------~---~----~~~~~~-~~~ 694 (829)
. ......++.++++.+|++.. ++.|.++| .+|...+.... + + ..+..| .+.
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 0 00123456667777887754 57899999 66654332210 0 0 011122 123
Q ss_pred ccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCcccc-ccccccccccccccccCCCcEEEEE-ccCCcEEEEEeecC
Q 003331 695 FALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIHILRVNLD 771 (829)
Q Consensus 695 ~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~l~~~d~~~~ 771 (829)
.+.+|.+|++. .++.|..||.+++.+......+...+. ............+-....++.+|++ +.++.|.+||.+++
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 34567788874 577899999988877543322110000 0000000000000011113445554 56778999998876
Q ss_pred c
Q 003331 772 V 772 (829)
Q Consensus 772 ~ 772 (829)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 361
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.052 Score=59.24 Aligned_cols=220 Identities=11% Similarity=0.085 Sum_probs=117.0
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE---EEEEEeC--CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCC
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ---VVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 571 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~---v~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 571 (829)
.|+..|...+... .+........++.+++||.. +|+...+ ..||..++.+|+..-.....+. ...|.+++++.
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCCC
Confidence 5666676544432 22223333457899999864 3344333 3699999988876543333332 34577777776
Q ss_pred EEEEecc-CC--eEEE--EEcCC---CeEEEeeccCCcccccceeecCCCEEEEEe-cCC--eEEEEEccCCCceEEEee
Q 003331 572 LIWCGSH-DH--NLYA--LDFRN---YRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSG--RLTAISVKALPFHTLWLH 640 (829)
Q Consensus 572 ~i~~gs~-~g--~l~~--~d~~t---g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g--~l~~~~~~~~~g~~~w~~ 640 (829)
.|++.+. +| .++. |+..+ |+..............+.+++++..|++.+ .+| .++.++.+...+... ..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-~l 322 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-LL 322 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-Ee
Confidence 6665432 22 3444 56554 343333322223445678888777766655 344 477777653212221 12
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee---CCeEEEE
Q 003331 641 ELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR---NGSIYSF 713 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~---~g~l~~~ 713 (829)
.........+..+++++.+++.... ..|+.+| .+|+...-...... ...+.... .+..|++.+. ...|+.+
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~-~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN-KESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC-ccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 1122223466778888888776543 3588899 77765322211111 11222211 1234554432 3468899
Q ss_pred eCCCCcEE
Q 003331 714 EQESGNLL 721 (829)
Q Consensus 714 d~~tG~~~ 721 (829)
|..+++..
T Consensus 401 dl~~g~~~ 408 (428)
T PRK01029 401 SLITKKTR 408 (428)
T ss_pred ECCCCCEE
Confidence 98877654
No 362
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0099 Score=55.84 Aligned_cols=234 Identities=11% Similarity=0.088 Sum_probs=128.3
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCeeeeeeeee-c-CCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGEVKCQPVVD-A-PRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~-~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
.+.-.|++|...+.|+.|..+...+.. ++-+...+....-...+. + .++.|...++||.+..|..++| .|...
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~ 95 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKA 95 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhh
Confidence 334456788999999999888876533 333333333222222222 2 3566777899999999998887 66542
Q ss_pred c----CCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEee-ccCCcceeeee--------------eeecC
Q 003331 598 C----GGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLH-ELEVPAFASLC--------------ITSAN 656 (829)
Q Consensus 598 ~----~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~~~~s~~--------------~~~~~ 656 (829)
. +.....+....+. +-.|.+++.||.|.+++.++..+-..-+. ..+.....+.. +...-
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 2 2223333333221 23578899999999998876312111011 11111111111 11112
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEEEeec--CCc------eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003331 657 RHVICCLVDGHVVALD-SSGSIIWRCRT--GGP------IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~~------~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
.++..|..|..+.++. .++ .|.... .+. +--.|.+. .....|..++.||++..|-.......|+...-
T Consensus 176 krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred ceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEecCccCccccccc
Confidence 4577777788888887 555 344321 110 11122111 12346778889999999986643345765433
Q ss_pred CccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+.... . ..+....++.+.++..|..+.+|..+
T Consensus 253 ~~f~~~~-w-------~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVV-W-------RVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCcce-E-------EEEEeccccEEEEecCCcEEEEEEeC
Confidence 3311100 0 01223448899999999999999655
No 363
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00021 Score=76.70 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=118.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.....|-.|+.+|.|..||+.+++...++..+.....+..+.+.+.+...|+.|..+..||.+..-+...|..+..+..
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 34566788889999999999999998776554443334556777766666688899999999875556666665555666
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..-+.+++..+..|+.|..+..||...|++.-.|..+.....++-+.+.+-.+--|+.++.+..||.++ .+.+-..+.
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--fe~I~s~~~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--FEVISSGKP 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce--eEEeeccCC
Confidence 666777777888888889999999999999888775433333333433222334567788899999886 555544333
Q ss_pred CCcceeeeeeeecCCEEEEE
Q 003331 643 EVPAFASLCITSANRHVICC 662 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~ 662 (829)
......+..+.+++..++.|
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccCCceeeeecCCceeeecC
Confidence 22222333444444444444
No 364
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.14 Score=57.22 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=112.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC---cE--EEEEe
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG---DI--YWTFQ 555 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG---~~--~w~~~ 555 (829)
+.+..-.++..++.|+..++. |..... .....+..+++.+..+.+|..||.|..|. .-| .- ...+.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSETCTLLH 248 (792)
T ss_pred ceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-ccccccccccceEEE
Confidence 334334455568888877655 432211 11123456778888899999999999986 233 10 01112
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
.+........+..++..+|.|+..+.+..|...|++...--..++ ++-..+++++++...+...|+.+..+...+ -+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI~li~~~d--l~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQIHLIKASD--LE 325 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC-eeEEEEEcCCCCeEEEEecCceEEEEeccc--hh
Confidence 222223344566688999999999999999999988444333333 334455566566666667788888887543 22
Q ss_pred EEEeecc---C--------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 636 TLWLHEL---E--------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 636 ~~w~~~~---~--------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
.+-.... . ........+.+.-+.+.+.+..|.|-.|| .+-+.+.++.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 2222211 1 11122334444455666677788898888 5555555554
No 365
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.50 E-value=0.16 Score=55.16 Aligned_cols=153 Identities=9% Similarity=-0.000 Sum_probs=94.7
Q ss_pred eeeceEEeeCCcE-EEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEe-cc--CCeEEEEEcCCC
Q 003331 518 IECSAAVLADFSQ-VVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCG-SH--DHNLYALDFRNY 590 (829)
Q Consensus 518 ~~~~~~~~~~~~~-v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~g-s~--~g~l~~~d~~tg 590 (829)
...++.++++++. ++..+++ ..||.+|..+|+...-....+ ....+.+++++..+++. +. +..||.+|..+|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4457889999874 6665544 469999999998765444333 33445677666666543 32 357999998888
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--
Q 003331 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-- 665 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-- 665 (829)
+...... .......+.+++++..|++.+.. | .||.+|+++ |+..-...... ....++++++.+++....
T Consensus 268 ~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFHGK---NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccCCC---cCceECCCCCEEEEEEcCCC
Confidence 6543222 22234567788878888777643 2 689999886 55421111111 123667788877665432
Q ss_pred -------CeEEEEc-CCCCE
Q 003331 666 -------GHVVALD-SSGSI 677 (829)
Q Consensus 666 -------g~i~~~d-~~g~~ 677 (829)
..|+.+| .+|..
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred cccCCCCcEEEEEECCCCCe
Confidence 3688888 66653
No 366
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.48 E-value=0.0014 Score=65.60 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=97.0
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee-eee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK-CQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~-~~~ 564 (829)
.+.|..++.|..|..||..||+..-+.. +.....+..+..+|+.+...|.|..|..||..+|++++.-..+...+ ...
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 4456666778899999999999887766 44456688999999999999999999999999999999764443332 223
Q ss_pred eeecCCCEEEEecc----CCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEccC
Q 003331 565 VVDAPRQLIWCGSH----DHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVKA 631 (829)
Q Consensus 565 ~~~~~~~~i~~gs~----~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~~ 631 (829)
++-.++. +++.+. +..+..||+.+-+ .....+.. +-.-.|+++++.+.||+. -.|+.|..|...+
T Consensus 223 ifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 223 IFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 3443333 544322 3456677765432 12222222 223457788877888764 4578888888775
No 367
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.045 Score=59.34 Aligned_cols=177 Identities=10% Similarity=-0.016 Sum_probs=105.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|+.+|+...-....+ ....+.+++|+..+++... +..||.+|..+|+..- ..........+.+.+++..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCE
Confidence 469999999998654433333 3345678888877665432 3579999988887543 2222223445678877777
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---------CeEEEEEccCCCceEEEee
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---------GRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~~~~g~~~w~~ 640 (829)
|++.+.. ..||.+|..+|+.......+. . .+.++++++.+++.+.. ..|+.+|+++ |... ..
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~~~-~L 364 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--DYIR-RL 364 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--CCeE-EC
Confidence 8776643 269999999887743332222 1 23566667766554432 3688888876 5432 22
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEe
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRC 681 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~ 681 (829)
... .....+.+++++..+++.+..+ .++.++.+|.....+
T Consensus 365 T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 365 TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 222 1223566777777777665432 244555445443333
No 368
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.47 E-value=0.034 Score=55.56 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=117.1
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-CeeeeeeeeecCCC--EE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQ--LI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~--~i 573 (829)
.+..++.+.+..+=+...+..+. .+--+.++++|.-. ..||.||.++=+++.+.++. .......++....+ ++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL---~VrmNr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSIL---AVRMNRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred eEEEEEcccCceEEEEecCCceE---EEEEccceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 47777777776666555555442 22234456666553 44999999999999887654 23332333333332 33
Q ss_pred EE-e-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEE-EEEccCCCceEEEeeccCCc--cee
Q 003331 574 WC-G-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLT-AISVKALPFHTLWLHELEVP--AFA 648 (829)
Q Consensus 574 ~~-g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~-~~~~~~~~g~~~w~~~~~~~--~~~ 648 (829)
.. + ...|.|+.||..+-+..-.+..+....+...++.++..+..++..|+|. ++...+ |+.+..+..+.. ...
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIY 222 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEE
Confidence 32 2 2358899999999888888888888888888888788888899889865 567666 888877755432 235
Q ss_pred eeeeeecCCEEEEEeeCCeEEEEc
Q 003331 649 SLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+.++..+...+.+.+..++|.+|-
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEE
Confidence 677777888888888888888875
No 369
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.46 E-value=0.027 Score=58.90 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=65.9
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
.+.+.+.|.||++..++. .|++......+.....+.-...+|.-+...+.||.|..|. ++|-++-+..-.+....+..
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 446777888998888874 5777666655555444556677777788888899999998 78866554332333333334
Q ss_pred eec-CCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 566 VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 566 ~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
+.+ ....+|+....-.+.-+-+...-+.|+.+
T Consensus 153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH 185 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH 185 (737)
T ss_pred ECCCCCceEEecCCeEEEeecccccceeEEecc
Confidence 444 34555554322223333334444556543
No 370
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=97.39 E-value=0.00022 Score=79.40 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=55.1
Q ss_pred EecCceEEEcc--CC--cEEEEeecCCcEEECCeeeChHHHHHHHhCC-----CCeeEEEEEEeecCCceEEEEEEEEec
Q 003331 149 FRTGDFARRIQ--SG--DLVFLGRKDRTIKINGQRMALEEIEHTLRGH-----PDVVDTAVVSHKHQGELVILVAFIVLK 219 (829)
Q Consensus 149 ~~TGDl~~~~~--~G--~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~ 219 (829)
|+.||++++.. ++ .+.|+||.+.++.+.|++++-.+|++++.+. -.+.+..+............+.++++.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 99999999742 34 7999999999999999999999999998764 335555555552222223556666666
Q ss_pred CCCCchHHHHHHHHHHHHhcC
Q 003331 220 EKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~l 240 (829)
... ...+.+.+.+.+.|
T Consensus 451 ~~~----~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 451 GEP----DDLEELAKALDESL 467 (528)
T ss_dssp S-H----HHHHHHHHHHHHCS
T ss_pred CCc----hHHHHHHHHHHHHh
Confidence 542 22334444444444
No 371
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.36 E-value=0.08 Score=57.80 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=93.4
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE---EEEeccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCC
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL---IWCGSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 612 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~---i~~gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~ 612 (829)
..|+..|...+... .+........+|.+.+++.. +|+...+ ..||..+..+|+........+. ...|.+++++
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCC
Confidence 36888886544433 33334444567888877653 3444333 3599999988875544433333 3457788777
Q ss_pred CEEEEEec-CC--eEEE--EEccCC-CceEEEeeccCCcceeeeeeeecCCEEEEEee-CC--eEEEEc-C-CCCEEEEe
Q 003331 613 DVLYVAST-SG--RLTA--ISVKAL-PFHTLWLHELEVPAFASLCITSANRHVICCLV-DG--HVVALD-S-SGSIIWRC 681 (829)
Q Consensus 613 ~~l~v~t~-~g--~l~~--~~~~~~-~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g--~i~~~d-~-~g~~~w~~ 681 (829)
..|++... .| .++. ++..+. .|+..............+.+++++..+++.+. +| .++.++ . .+...-..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 77766542 22 3444 455431 12222222111122245677888887776653 33 467666 2 23222222
Q ss_pred ecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEE
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNLL 721 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~ 721 (829)
.........+..+.+ +..|++.+.+ ..|+.+|..+|+..
T Consensus 323 t~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 323 TKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ccCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 211111122222222 3345544432 36899999988764
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.33 E-value=0.052 Score=56.13 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=91.3
Q ss_pred EEECCCCcEEEEEEcCCc-----eeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCC
Q 003331 500 CADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 571 (829)
Q Consensus 500 ~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 571 (829)
..|+.||..+-++.-... .....++..+|..++..+. ...+|.+|+++|+...-....+......++...+.
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC
Confidence 357888876644432222 1234567777766555543 34799999999998765443333222334444556
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEEe-----------------------cCCeEEE
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVAS-----------------------TSGRLTA 626 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~t-----------------------~~g~l~~ 626 (829)
.+|.-..+..|+.+|++|++..-.+........ ..+... +.+.+++. ....|+.
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 654433456899999999887555544432221 112222 34444332 1135777
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCE-EEEEe------eCCeEEEEcCCCCEEEEeecCC--ceeecCcccccC
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRH-VICCL------VDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFAL 697 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~-l~~~~------~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~ 697 (829)
+|+++ |+..-.+.... -...+..++.+.. |.+|- .+..|..++.+|.-.|...... .+..-..... .
T Consensus 173 idl~t--G~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-D 248 (386)
T PF14583_consen 173 IDLKT--GERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-D 248 (386)
T ss_dssp EETTT----EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-T
T ss_pred EECCC--CceeEEEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-C
Confidence 88877 65432222111 1122223332222 22221 1335666665555555543221 1111111111 1
Q ss_pred CCeEEEEee-----CCeEEEEeCCCCcEEEEEec
Q 003331 698 PSQVLICSR-----NGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 698 ~~~i~~~t~-----~g~l~~~d~~tG~~~w~~~~ 726 (829)
+..||.-+. +-.|+.+|+.|++..|....
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 234544322 23689999999987765444
No 373
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.066 Score=52.42 Aligned_cols=197 Identities=9% Similarity=0.031 Sum_probs=101.3
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE----EecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEc--
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT----FQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDF-- 587 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~----~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~-- 587 (829)
+.......+++.+|+.+...+.|+.|..|+.++-...-. ...+-.-.....+.++-.-+++.... ..|+.|-.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 344455788999999999999999999999876322110 01111111222344443333333323 34555432
Q ss_pred C-CCeEEEeec------c---CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003331 588 R-NYRCVYKLP------C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 588 ~-tg~~~w~~~------~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
+ +|..-..+. . +...+.+.-+.+....|..++.+..|..|+.+ |+.+-..+.+.......++++++.
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---CceeeeeccccccccceeeCCCCc
Confidence 2 222111100 0 01111122233323345556667778888877 777777665544444556777777
Q ss_pred EEEEEeeCCeEEEEc----CCCCEE-----EEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 658 HVICCLVDGHVVALD----SSGSII-----WRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d----~~g~~~-----w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.++...-.+.+|. .+|... ++.+... .+....+ . .....+...+.||.+..||.+
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-s-n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-S-NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-C-CCcceeEEEecCCcEEEeecc
Confidence 777765555555544 344321 1221111 1111111 1 123467888999999999854
No 374
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.29 E-value=0.007 Score=66.00 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=109.2
Q ss_pred ccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ce-eeceEE---eeCCcEEEEEEeCCE
Q 003331 466 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RI-ECSAAV---LADFSQVVVGCYKGK 539 (829)
Q Consensus 466 W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~-~~~~~~---~~~~~~v~vg~~dg~ 539 (829)
|..++.+...|-.+ ..+..+.+.+|-.--.|++++...-.+.-....+. .. .+..-+ ..+.+.|.+.+.+|.
T Consensus 34 ~~~~~k~~~nAIs~--nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 34 MNCKLKAKANAISV--NRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred eeeecccccceEee--cCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCc
Confidence 55555444332222 23344455555443457777765433222222111 11 111111 123456788888999
Q ss_pred EEEEEcCC---CcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-E
Q 003331 540 IYFLDYLT---GDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-V 614 (829)
Q Consensus 540 l~~~d~~t---G~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~ 614 (829)
|.+||+.. .+.+..|.-+........+. ....+|+.|+.||.+.+||.+..+-.-.+......+....+.+..+ .
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK 191 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce
Confidence 99999754 23322232222221122221 2347888999999999999987665554444333333333333334 4
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
...+..+|.|..||+.. -.+|..+. +..........++...+..|+.|+.+.+||
T Consensus 192 F~s~~dsG~lqlWDlRq---p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQ---PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred EEEecCCceEEEeeccC---chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 44555678889999874 23343332 222234555666777888888899999999
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.32 Score=52.23 Aligned_cols=200 Identities=13% Similarity=0.171 Sum_probs=128.0
Q ss_pred ceEEeeCCcEEEEEEeC-CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEee
Q 003331 521 SAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~ 596 (829)
...+...+..+|+.+.+ +.+..+|..+-+.......+. ......++.+++.+|++.. ++.+..+|..+++..-..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 44566677788887754 779999977776665554443 2233455667789999765 578999999999887775
Q ss_pred ccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEe--eccC---CcceeeeeeeecCCEEEEEeeC---Ce
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWL--HELE---VPAFASLCITSANRHVICCLVD---GH 667 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~--~~~~---~~~~~s~~~~~~~~~l~~~~~~---g~ 667 (829)
..+... ....++.++..+|+.. .++.+..+|.++ ..+|+ .... ........+.+++.++|+.... +.
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC---cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 554433 4556677778899887 567899999764 44553 1101 1111344566678888887655 48
Q ss_pred EEEEc-CCCCEEEE-eecCCceeecCccccc-CCCeEEEEee-CCeEEEEeCCCCcEEEEEecC
Q 003331 668 VVALD-SSGSIIWR-CRTGGPIFAGPCTSFA-LPSQVLICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 668 i~~~d-~~g~~~w~-~~~~~~~~~~~~~~~~-~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
+..+| .++...+. ...+.. ....+... .+..+|+... .+.++.+|..+.++.-.....
T Consensus 233 v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 89999 77777665 333331 11111112 2446777643 478999998887776554433
No 376
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00094 Score=75.82 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=130.3
Q ss_pred CeEEEEecCCCcEEEEECCC---Cc---EEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEec--
Q 003331 486 DIYLFVGSHSHKFICADAKR---SS---VLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQT-- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---g~---~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~-- 556 (829)
.|.|.-|..||.|..||+.. +. .+-+++.+.+.+...-+....+ .+..|..||.|+.||+++-+.-.++..
T Consensus 80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 35677777899999999764 21 1122223333223344544444 778889999999999877443322210
Q ss_pred -CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--ccccceeecCC-CEEEEEecCC---eEEEEE
Q 003331 557 -CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVH-DVLYVASTSG---RLTAIS 628 (829)
Q Consensus 557 -~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~-~~l~v~t~~g---~l~~~~ 628 (829)
.+++.+ ..+... ..++..++.+|....||++..+.+-.+...+. .++.....+++ ..|++++.+. .|..||
T Consensus 160 ~~~eI~~-lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 160 PPSEIKC-LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CcccceE-eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 112211 111111 12344567788999999988776655544332 23344444433 3577777654 355666
Q ss_pred ccCCCceEEEeeccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe
Q 003331 629 VKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS 705 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t 705 (829)
+... -..+..++.+.....+...+..+ ..++.+..|+.++|+| .+|+++..+...+.- +.... .....+.+-+.+
T Consensus 239 lR~a-ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w-~pr~P~~~A~as 316 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW-CPRNPSVMAAAS 316 (1049)
T ss_pred cccc-CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee-cCCCcchhhhhe
Confidence 4431 12223333344444455554444 5666777899999999 999999888764432 11111 111223455667
Q ss_pred eCCeEEEEeCCCCc
Q 003331 706 RNGSIYSFEQESGN 719 (829)
Q Consensus 706 ~~g~l~~~d~~tG~ 719 (829)
.+|.|-.++..++.
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 78888888776543
No 377
>PRK00982 acpP acyl carrier protein; Provisional
Probab=97.26 E-value=0.0005 Score=54.57 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++.+.++++.++.++. ..+..+.+| -++|-|||..+++...+ .++...+++.+|+..++.++.++
T Consensus 3 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 76 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKH 76 (78)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHh
Confidence 4567788888888876 458888899 79999999999998765 47788899999999999999764
No 378
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.25 E-value=0.098 Score=53.57 Aligned_cols=145 Identities=11% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCEEEEEEcCCCcEEEEEecCCee--------------------------eeee-eeecCCCEEEEeccCCeEEEEEcCC
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEV--------------------------KCQP-VVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~--------------------------~~~~-~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
|+.++.+|.+||+++|+....+-+ -... -...++++|+..-+-..|+++|.++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 567899999999999874321100 0001 1122234444444457899999999
Q ss_pred CeEEEeeccC-Ccc-------c---ccceee---cCCCEEEEEe-----------cCCeEEEEEccCCCceEEEeec-cC
Q 003331 590 YRCVYKLPCG-GSI-------F---GSPAID---EVHDVLYVAS-----------TSGRLTAISVKALPFHTLWLHE-LE 643 (829)
Q Consensus 590 g~~~w~~~~~-~~~-------~---~~~~~~---~~~~~l~v~t-----------~~g~l~~~~~~~~~g~~~w~~~-~~ 643 (829)
|+++|+.... +.. + -.+-+. ++++.|-+-. ..+.++.+|..+.+-+.++.+. ..
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~ 254 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHP 254 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCC
Confidence 9999998533 110 0 011111 1123332211 2356777787763333333333 11
Q ss_pred Ccce----eeeeeeecCCEEEEE-eeCCeEEEEcCCCCEEEEee
Q 003331 644 VPAF----ASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCR 682 (829)
Q Consensus 644 ~~~~----~s~~~~~~~~~l~~~-~~~g~i~~~d~~g~~~w~~~ 682 (829)
.+.. .+....++ +.++++ +..+.+.=++.+|+++|++.
T Consensus 255 ~~~~s~~~G~~Q~L~n-Gn~li~~g~~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 255 DGFYSPSQGSAQRLPN-GNVLIGWGNNGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred CcccccCCCcceECCC-CCEEEecCCCceEEEECCCCCEEEEEE
Confidence 2111 22233334 455554 44566777778899999875
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.24 E-value=0.091 Score=51.50 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=93.8
Q ss_pred CCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccC
Q 003331 569 PRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 569 ~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.++.+|-++.- ..|+.+|+++|+.+.+.......++ .+++. ++.||.-|+ ++..+.||.++ .+.+-++...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYP 129 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT--TEEEEEEE-S
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc--ceEEEEEecC
Confidence 34777776532 2699999999999998888766554 23333 378888887 57789999987 7766665544
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec--CC-ceeecCcccccCCCeEEEEe-eCCeEEEEeCCCC
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--GG-PIFAGPCTSFALPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~-~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
... =.+..++..+++......|+.+| .+-+..-+.++ .+ ++.... -..-.+|.||+-- ....|..+|+.||
T Consensus 130 ~EG---WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN-ELE~i~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 130 GEG---WGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN-ELEYINGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp SS-----EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE-EEEEETTEEEEEETTSSEEEEEETTT-
T ss_pred Ccc---eEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE-eEEEEcCEEEEEeCCCCeEEEEeCCCC
Confidence 322 12345788899988888999999 77666655443 22 211111 0122367888764 3567999999999
Q ss_pred cEEEEEec
Q 003331 719 NLLWEYSV 726 (829)
Q Consensus 719 ~~~w~~~~ 726 (829)
++.-.++.
T Consensus 206 ~V~~~iDl 213 (264)
T PF05096_consen 206 KVVGWIDL 213 (264)
T ss_dssp BEEEEEE-
T ss_pred eEEEEEEh
Confidence 99876664
No 380
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.23 E-value=0.0054 Score=58.16 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=78.1
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCCc------ccccceee----cCCCEEEEEecCCeEEEEEccCCCceEEE--ee
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGSPAID----EVHDVLYVASTSGRLTAISVKALPFHTLW--LH 640 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~----~~~~~l~v~t~~g~l~~~~~~~~~g~~~w--~~ 640 (829)
+.+|-.+|++..||..++..+-.+..... ....|+.+ ..-++=..++.+-.+..|+++..+|...- ..
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 44566679999999999855433322111 11111111 10111122333334556665554454322 22
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEeeCCeEEEEeC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~ 715 (829)
....+......+-++++.+..+.+|+++.+|+ +++..+-.......- ..++.+..+ +.+-.++.|+.|..|+.
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag--vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG--VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc--eeEEEeCCCCchhhhccCCceEEeeec
Confidence 34455556677888899999999999999999 888776444332211 111122223 45667788888877763
No 381
>CHL00124 acpP acyl carrier protein; Validated
Probab=97.23 E-value=0.00052 Score=55.03 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCccc-cCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNFFT-MGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~-lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+.+.++.++.++. ..+.++++|.+ +|.|||.+++|...+ .++...+...+|+..++.++.++.
T Consensus 4 ~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 4 NDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 45677888888888876 56899999988 999999999998765 477778999999999999998754
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.23 E-value=0.069 Score=52.29 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.++.+|-+|.. ..|..+|+.||+.+.+.+++.....-.+... ++.+|.-++ ++..+.||.+|-+.+-++...++-
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 46788888742 3799999999999999888876543222222 357888887 577899999999998888776543
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--Cccc---ccceeecCCCEEEEEec-CCeEEEEEccCCCc
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPF 634 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g 634 (829)
..- .. ++..+|....+..|+.+|+++-+.+.++... +... .-.-+. ++.||+.-+ ...|..+|+++ |
T Consensus 133 WGL--t~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t--G 205 (264)
T PF05096_consen 133 WGL--TS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET--G 205 (264)
T ss_dssp -EE--EE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT---
T ss_pred eEE--Ec-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC--C
Confidence 322 22 4567888777789999999987776655432 2111 111222 478887665 34688999998 8
Q ss_pred eEEEeec
Q 003331 635 HTLWLHE 641 (829)
Q Consensus 635 ~~~w~~~ 641 (829)
+..-.++
T Consensus 206 ~V~~~iD 212 (264)
T PF05096_consen 206 KVVGWID 212 (264)
T ss_dssp BEEEEEE
T ss_pred eEEEEEE
Confidence 8766554
No 383
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.29 Score=49.30 Aligned_cols=239 Identities=12% Similarity=0.147 Sum_probs=127.6
Q ss_pred eeCCCeEEEEecCC---CcEEE--EECCCCcEEEE--EEcCCceeeceEEeeCCcEEEEEEeCC-EEEEEEcC-CCcEEE
Q 003331 482 LKDSDIYLFVGSHS---HKFIC--ADAKRSSVLWE--IKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYL-TGDIYW 552 (829)
Q Consensus 482 ~~d~~~~l~igs~~---g~l~~--~d~~tg~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg-~l~~~d~~-tG~~~w 552 (829)
.+.....||++-.+ |.+.+ ||..+|++... ....+..-+...++.++..|+++.+.. .|..+-.. +|.+.-
T Consensus 47 ~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 47 VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 34456688887654 45554 55556776432 233333335567777888999998864 45555443 365532
Q ss_pred EE---ecCCe--------e-eeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeecc---CCcccccceeecCCCEEE
Q 003331 553 TF---QTCGE--------V-KCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 553 ~~---~~~~~--------~-~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~---~~~~~~~~~~~~~~~~l~ 616 (829)
.. ...+. . .-...+.+++.+|++.+. ...++.|+.+.|++.-.... .+.--..+++.+++...|
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence 21 11111 0 112234555666666532 23688888888876433221 222234567777788888
Q ss_pred EEec-CCeEEEEEccCCCceE--EEeecc------CCcceeeeeeeecCCEEEEEeeC-CeEE--EEc-CCCCEEEE--e
Q 003331 617 VAST-SGRLTAISVKALPFHT--LWLHEL------EVPAFASLCITSANRHVICCLVD-GHVV--ALD-SSGSIIWR--C 681 (829)
Q Consensus 617 v~t~-~g~l~~~~~~~~~g~~--~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~-g~i~--~~d-~~g~~~w~--~ 681 (829)
+.+. ++.|.+|..++..|+. +..... +.+..+.+.++.++..+|++... ..|. .+| .+|++... .
T Consensus 207 ~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 207 LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 7664 7888888777643442 222211 11223556777788888887542 2344 445 44544321 1
Q ss_pred ecCCceeecCcccccCCCeEEEEeeCC---eEEEEeCCCCcEE
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGNLL 721 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~g---~l~~~d~~tG~~~ 721 (829)
.+.+. +.-.+.....++.|++...++ .+|..|.+||++.
T Consensus 287 ~teg~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 287 PTEGQ-FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCc-CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 22221 000011122244566665443 5788899999874
No 384
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.077 Score=60.44 Aligned_cols=287 Identities=11% Similarity=0.047 Sum_probs=135.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
.-..-++++.....+..||-..++.+-.|+.+.. -++...+.+ |...+.+++.||.|..|+. =...|. ...
T Consensus 1074 pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~--y~~~~~--~~e 1149 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD--YADKWK--KPE 1149 (1387)
T ss_pred CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc--cccccC--Cce
Confidence 3344566665556677888777777666654421 122333333 3345777777887777752 111120 000
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
-+.. +..-.+.+-.....|.|..|.- ..+.+++++.-..|.+||... -....
T Consensus 1150 LVTa---w~~Ls~~~~~~r~~~~v~dWqQ-----------------------~~G~Ll~tGd~r~IRIWDa~~--E~~~~ 1201 (1387)
T KOG1517|consen 1150 LVTA---WSSLSDQLPGARGTGLVVDWQQ-----------------------QSGHLLVTGDVRSIRIWDAHK--EQVVA 1201 (1387)
T ss_pred eEEe---eccccccCccCCCCCeeeehhh-----------------------hCCeEEecCCeeEEEEEeccc--ceeEe
Confidence 0000 0000011111111122222221 125566665555677788765 22222
Q ss_pred eeccCCcce-eee-eeeecCCEEEEEeeCCeEEEEc-CCC-----CEEEEeecC-CceeecCcccccCCCeEEEEeeCCe
Q 003331 639 LHELEVPAF-ASL-CITSANRHVICCLVDGHVVALD-SSG-----SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGS 709 (829)
Q Consensus 639 ~~~~~~~~~-~s~-~~~~~~~~l~~~~~~g~i~~~d-~~g-----~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~ 709 (829)
....+.... .+. +-...++.+.+|..||.+.+|| ..- -..|+-... .++..... .....+.++.|+.+|.
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGD 1280 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe-ecCCCcceeeeccCCe
Confidence 222222111 111 1112367888899999999999 422 223442211 12222211 1112346999999999
Q ss_pred EEEEeCCCCcEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccccc
Q 003331 710 IYSFEQESGNLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 783 (829)
Q Consensus 710 l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~ 783 (829)
|+.||.+.....-.... ++..+. ..+ ..+...++.|+. +.|.+|+......+-...
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTa-l~V-----------H~hapiiAsGs~-q~ikIy~~~G~~l~~~k~----- 1342 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTA-LTV-----------HEHAPIIASGSA-QLIKIYSLSGEQLNIIKY----- 1342 (1387)
T ss_pred EEEEecccCcccccceeeeccccCcccee-eee-----------ccCCCeeeecCc-ceEEEEecChhhhccccc-----
Confidence 99999886422111111 111111 111 123567777776 889999887543221110
Q ss_pred ceeeeeeccCCc---ccccceEEC--CEEEEeeeCCeEEEEecccccc
Q 003331 784 VQEFAKLELQGD---IFSSPVMIG--GRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 784 ~~~~~~~~~~~~---~~~s~~~~~--~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+..+.+. ..++..++- =.+.+|..|..+-.|....+++
T Consensus 1343 -----n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1343 -----NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred -----CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 0011111 112333332 2455677788888887665544
No 385
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=97.22 E-value=0.00071 Score=54.89 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcccCcce---eccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVEE---VLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~~---i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+...+...|...++... +..+.+||++|+||+.++++...+ .++...++.+||+..++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 12 LLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 455667777877776632 478889999999999999987653 47888899999999999988753
No 386
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.22 E-value=0.00015 Score=81.79 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=87.0
Q ss_pred HHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHcCCcchhhhcCCCHHHHHHHHHh----hcCCCc-----ccc-
Q 003331 295 RKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLE----KKGLCN-----LDV- 361 (829)
Q Consensus 295 ~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~pt~~~la~~l~~----~~~~~~-----~~~- 361 (829)
.+..+.+||+ ..+..+.++++||.|||+.+++...|+-....++....+++|..--.+ +.+..+ .+.
T Consensus 2010 iatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEiRqLT~~kLqql~~~a~~~~~aa~~~~ke 2089 (2376)
T KOG1202|consen 2010 IATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEIRQLTLRKLQQLDSKADEAPEAACPTPKE 2089 (2376)
T ss_pred HHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHHHHHHHHHHHHhhccCCCCccccCCCCch
Confidence 3344566776 457889999999999999999988776444444444444444322111 111000 000
Q ss_pred -----------------ccc-----cccccCcccccccccccCccccchhhhhhcccccCCccccCCcccc---------
Q 003331 362 -----------------SAD-----ANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHH--------- 410 (829)
Q Consensus 362 -----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~--------- 410 (829)
... .......+++++|.+|+--|..-....|+++|. .|.|++|+-..
T Consensus 2090 ~~~~~~qtql~~~~~~v~~e~~~~l~~ka~~se~~~~Ffv~pIEG~tt~l~~la~rle--~PaYglQ~T~~vP~dSies~ 2167 (2376)
T KOG1202|consen 2090 DGLAQQQTQLVFRSLLVNPEGPVLLRLKAVQSEEPPLFFVHPIEGFTTALESLASRLE--IPAYGLQCTEAVPLDSIESL 2167 (2376)
T ss_pred hhHHHHHHHHHHhhhcCCccccHHHhhhhhcccCCceEEEeccccchHHHHHHHhhcC--CcchhhhccccCCcchHHHH
Confidence 000 001124455789999999998888888888876 58999987431
Q ss_pred -----cCCCCCccCCCCCC-eeeecccccee
Q 003331 411 -----HKDGLPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 411 -----~~~~~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
+.-..-+|..||++ |+|+|-|.+|+
T Consensus 2168 A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ 2198 (2376)
T KOG1202|consen 2168 AAYYIRQIRKVQPEGPYRLAGYSYGACLAFE 2198 (2376)
T ss_pred HHHHHHHHHhcCCCCCeeeeccchhHHHHHH
Confidence 00011234449999 99999999987
No 387
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=97.21 E-value=0.0022 Score=72.85 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=104.3
Q ss_pred CcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 003331 88 NCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 163 (829)
Q Consensus 88 ~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 163 (829)
+..+.+++++. ..++.|||||.++++..+|+.-+..|...|...+....- ...+...|.|||=+|+++++ .+
T Consensus 511 ~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~---~~~~n~~FmRtGLlGFv~~g-ki 586 (1363)
T KOG3628|consen 511 DATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSG---KPPSNVPFMRTGLLGFVHNG-KI 586 (1363)
T ss_pred ceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccC---CCCccchhhhhcceeeeeCC-eE
Confidence 34455666555 356779999999999999999998888888765543211 12234578899999998654 55
Q ss_pred EEEeec-CCcEEECCeeeChHHHH----------HHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHH
Q 003331 164 VFLGRK-DRTIKINGQRMALEEIE----------HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 232 (829)
Q Consensus 164 ~~~GR~-dd~ik~~G~~i~~~~iE----------~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 232 (829)
+++|-+ |....+.|.+.+..+|- .+.+..+.|-++.++- + +.++..++-++.....+. .+-+
T Consensus 587 ~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~----E~~~Vv~~esP~a~e~~~-~q~~ 659 (1363)
T KOG3628|consen 587 YVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--D----EHIVVVVLESPDATEENS-FQWM 659 (1363)
T ss_pred EEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--c----ceEEEEEEeCcchhhhhh-hhHH
Confidence 555554 44445588887766553 3334567777777775 1 233333333333221111 1111
Q ss_pred HHHHHhcCCCCCcCCe---EEEeCcccCCCCCCcchhhhccccc
Q 003331 233 KSWVSSKLPLAMIPNR---FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 233 ~~~l~~~l~~~~~p~~---~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+-++.....+.+-.. ++.-..||+|+-|-|.-..+++.+.
T Consensus 660 ~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~ 703 (1363)
T KOG3628|consen 660 SRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFL 703 (1363)
T ss_pred HHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHH
Confidence 2222222222333222 3334679999988788777776654
No 388
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.21 E-value=5e-05 Score=75.58 Aligned_cols=76 Identities=12% Similarity=-0.002 Sum_probs=60.0
Q ss_pred cccccccCccccchhhhhhcccccC-CccccCCcccccCCCCCccCC-------------------CCCC-eeeeccccc
Q 003331 375 KEHQFHSGYSRTENHAVVSKRLKVN-STKYFKPELHHHKDGLPWNLS-------------------SVPM-SCSFSRCNK 433 (829)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~y~~~~~~~~~~~~~~~~~-------------------~~~~-~~s~~~~~~ 433 (829)
++||+|++.|.+..|..|++.|+.+ .++|+++.++.. ...+...+ ||.| |||+||.+|
T Consensus 2 ~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA 80 (229)
T PF00975_consen 2 PLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRG-DDEPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILA 80 (229)
T ss_dssp EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHH
T ss_pred eEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHH
Confidence 6899999999999999999999998 999999998743 22222233 8999 999999999
Q ss_pred ee--ecccccccccccccee
Q 003331 434 VM--HEEKIRGNDLCGVNWS 451 (829)
Q Consensus 434 ~~--~~~~~~~~~~~~~~~~ 451 (829)
++ .+++.++..+.+..+.
T Consensus 81 ~E~A~~Le~~G~~v~~l~li 100 (229)
T PF00975_consen 81 FEMARQLEEAGEEVSRLILI 100 (229)
T ss_dssp HHHHHHHHHTT-SESEEEEE
T ss_pred HHHHHHHHHhhhccCceEEe
Confidence 98 6666677766655544
No 389
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.19 E-value=0.062 Score=52.93 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=72.9
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcc
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPA 646 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~ 646 (829)
-.+.+|+.-|.|+.+|..++++.-.+..++..++.+-..+ +.+.|+.++.|..|..||+++ ...+--+. .+...
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccccCc
Confidence 3456677889999999999988877766665544443333 235788899999999999998 65554432 23344
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+..+..++.++..+..|-.|..|+
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEe
Confidence 56777777888898888888888887
No 390
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.16 Score=54.54 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=127.4
Q ss_pred CCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCe
Q 003331 484 DSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 484 d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+.+.++|+.+. ++.+..+|..+-+..-....+. ......+..+++.+|+... ++.+..+|..++++.-+...+..
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 45667888774 3779999987777665555443 2235677788889999876 58899999999998776554432
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEecC---CeEEEEEc
Q 003331 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVASTS---GRLTAISV 629 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~ 629 (829)
. ...+++++++.+|+.. .++.+..+|.++- .+|+ ... +..-....++.++..+|+.... +.+..+|.
T Consensus 162 P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred c-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 2 4455666778788875 5688999996554 4443 111 1112334566667888887655 47888888
Q ss_pred cCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeec
Q 003331 630 KALPFHTLWL-HELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 630 ~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~ 683 (829)
.+ +...+. ..............+++..+|+.... +.+..+| .+..+.-....
T Consensus 239 ~~--~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 239 AT--GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CC--ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 77 776665 22222122344566678888887544 7888888 66666544443
No 391
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.16 E-value=0.0059 Score=60.88 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=98.2
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC-CcEEEEEEeCCEEEEEE
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD-FSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d 544 (829)
|-.++=||. ..+.+..|.-.+.|+.|.+.+|. |.+... ...+-....++. .+.+..++-||.|..||
T Consensus 214 Gy~LdWSp~-----~~g~LlsGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWD 286 (440)
T KOG0302|consen 214 GYGLDWSPI-----KTGRLLSGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWD 286 (440)
T ss_pred ceeeecccc-----cccccccCccccceEeeeeccCc--eeecCccccccccchhhhccCCccCceEEeeecCceEEEEE
Confidence 345666785 36778888777889999998876 765421 111112233332 34556667799999999
Q ss_pred cCCCc---EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC---CeEEEeeccCCcccccceeecCC-CEEEE
Q 003331 545 YLTGD---IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---YRCVYKLPCGGSIFGSPAIDEVH-DVLYV 617 (829)
Q Consensus 545 ~~tG~---~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~~~-~~l~v 617 (829)
...|. .+.+...++.+. ..-+......|..|+.+|.+..||+++ |+++-.++.+...+.++-..+.+ ..+.+
T Consensus 287 iRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 287 IRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred ecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 99883 333322222222 222333344688899999999999864 56666676666666666665433 56677
Q ss_pred EecCCeEEEEEccC
Q 003331 618 ASTSGRLTAISVKA 631 (829)
Q Consensus 618 ~t~~g~l~~~~~~~ 631 (829)
++.|.++..||+..
T Consensus 366 sg~D~QitiWDlsv 379 (440)
T KOG0302|consen 366 SGEDNQITIWDLSV 379 (440)
T ss_pred ccCCCcEEEEEeec
Confidence 77888999998663
No 392
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.34 Score=48.79 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=133.7
Q ss_pred EEEEEEeC----CEEEEEEcC--CCcEEEEEec-CC-eeeeeeeeecCCCEEEEecc---CCeE--EEEEcCCCeEEEe-
Q 003331 530 QVVVGCYK----GKIYFLDYL--TGDIYWTFQT-CG-EVKCQPVVDAPRQLIWCGSH---DHNL--YALDFRNYRCVYK- 595 (829)
Q Consensus 530 ~v~vg~~d----g~l~~~d~~--tG~~~w~~~~-~~-~~~~~~~~~~~~~~i~~gs~---~g~l--~~~d~~tg~~~w~- 595 (829)
.+|+|++. ..||.|+.. +|++ |..+. .. ....-..+.++...+|++-. .|++ |.+|..+|++-..
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 57888875 467777654 4543 22211 11 11122344556668888744 3555 5556666866443
Q ss_pred -eccCCcccccceeecCCCEEEEEecC-CeEEEEEccCCCceEEEeec---cCC---------cceeeeeeeecCCEEEE
Q 003331 596 -LPCGGSIFGSPAIDEVHDVLYVASTS-GRLTAISVKALPFHTLWLHE---LEV---------PAFASLCITSANRHVIC 661 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~---~~~---------~~~~s~~~~~~~~~l~~ 661 (829)
....+...+...+++++..|+++... |.|.++-+++ .|...-..+ ... +......+.+++.++++
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~-dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA-DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc-CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 33344444666778877789988875 4455555543 254322111 111 11233456667777777
Q ss_pred Eee-CCeEEEEc-CCCCEEEEeecCCceeecCc-c-cccCCCeEEEEee-CCeEEEEeCCC--CcEEEEEe---cCCccc
Q 003331 662 CLV-DGHVVALD-SSGSIIWRCRTGGPIFAGPC-T-SFALPSQVLICSR-NGSIYSFEQES--GNLLWEYS---VGDPIT 731 (829)
Q Consensus 662 ~~~-~g~i~~~d-~~g~~~w~~~~~~~~~~~~~-~-~~~~~~~i~~~t~-~g~l~~~d~~t--G~~~w~~~---~~~~~~ 731 (829)
..- ...|+.|+ .+|++.-.....-+.-+.|- + ........|+.++ +++|-+|..+. |++.--.. .+....
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 653 34688888 77765422221111111111 1 1112345666654 66666665444 55532111 111111
Q ss_pred cccccccccccccccccCCCcEEEEEccCC-cEEEEEee--cCccccccccccccceeeeeeccCCcccccceE--ECCE
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSG-SIHILRVN--LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGR 806 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~ 806 (829)
......+ -....++.++|+....- .|.+|..+ ++. ..........+..-....+ .++.
T Consensus 242 g~~~~aa------Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 242 GTNWAAA------IHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred CCCceeE------EEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCE
Confidence 1100000 01123477888776532 35555443 221 1222222333322222222 3456
Q ss_pred EEEeeeCC---eEEEEeccccccc
Q 003331 807 VFVGCRDD---YIYCIALETQHLE 827 (829)
Q Consensus 807 l~vg~~~g---~l~~~d~~tg~~~ 827 (829)
|++...++ .+|..|.+||++.
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceEE
Confidence 66665433 5677788899875
No 393
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.26 Score=48.19 Aligned_cols=183 Identities=10% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCCEEEEeccCCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
.++.+|++.++.+|..+|+.+-. ++-.+...+. .-.+.-.++..|++..+..+..+|..+.+ ++.-.-....+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy---aygv~vsGn~aYVadlddgfLivdvsdps-sP~lagrya~~ 170 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY---AYGVYVSGNYAYVADLDDGFLIVDVSDPS-SPQLAGRYALP 170 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCce---EEEEEecCCEEEEeeccCcEEEEECCCCC-CceeeeeeccC
Confidence 35789999999999999987642 2222222111 11122235889999877778888877622 22111111111
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CC---CCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SS---GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~---g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
...+-.+...+++.|++..++++..+| .+ -.++-++.++..+.+. ...+++.|+.-.+-++...|..+-+-.
T Consensus 171 ~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv----~vsdnr~y~vvy~egvlivd~s~~ssp 246 (370)
T COG5276 171 GGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV----SVSDNRAYLVVYDEGVLIVDVSGPSSP 246 (370)
T ss_pred CCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE----EecCCeeEEEEcccceEEEecCCCCCc
Confidence 111123344688999999999999999 42 3445555555444333 223667888877778999998877766
Q ss_pred EEEec---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 722 WEYSV---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|.+.. .++...+ .....+.+.|+...+.++-+.|..+.
T Consensus 247 ~~~gsyet~~p~~~s------------~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 247 TVFGSYETSNPVSIS------------TVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEeeccccCCccccc------------ceecccceeeeeccccCceeEeccCC
Confidence 65432 2221111 11233778888888877888877643
No 394
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.00062 Score=73.18 Aligned_cols=188 Identities=12% Similarity=-0.006 Sum_probs=114.8
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
..+..|..+..+-.|....-..+-.+..+...+-+..+..+...|..|+.+|.|..||++.++++.+...+-....+..+
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 34555555544333332111111234455555556777777778889999999999999999987765444332333335
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
.+...+..-|+.|..+..||.+...+...+..+........+.+++..+..++.+..+.+||... |+..-.++.+...
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGK 198 (825)
T ss_pred ccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--ccccccccccccc
Confidence 55444444478889999999986667777765444445555666566777888889999999877 8877666533322
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
..+..+.+.+-.+--|+.+..+-.|| .+-+
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeE
Confidence 22222322222334455566666666 4433
No 395
>PRK09184 acyl carrier protein; Provisional
Probab=97.08 E-value=0.0012 Score=53.18 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHhcccCc-----ceeccCCCccc--cCCChHHHHHHHHHc----CCcc-----hhhhcCCCHHHHHHHHH
Q 003331 288 SDLLQVIRKAFGHALMV-----EEVLHHDNFFT--MGGNSIAAAHVAHNL----GIDM-----RLIYNFPTPSKLEIALL 351 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~-----~~i~~~~~Ff~--lGgdSl~a~~l~~~l----~~~~-----~~~~~~pt~~~la~~l~ 351 (829)
+++++.++++..+.|++ ++|.++..||. +|.|||.++.|...+ ++.+ ..+..++|+..|+.++.
T Consensus 5 ~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~ 84 (89)
T PRK09184 5 TALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVA 84 (89)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHH
Confidence 46788899999888874 56889999865 999999999988654 4433 33667899999999998
Q ss_pred hhc
Q 003331 352 EKK 354 (829)
Q Consensus 352 ~~~ 354 (829)
++.
T Consensus 85 ~~~ 87 (89)
T PRK09184 85 AHR 87 (89)
T ss_pred Hhh
Confidence 754
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.049 Score=61.57 Aligned_cols=207 Identities=9% Similarity=0.150 Sum_probs=98.6
Q ss_pred cEEEEECCCCcEEEEEE--cCCceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-eeeeeeeee
Q 003331 497 KFICADAKRSSVLWEIK--LEGRIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG-EVKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~ 567 (829)
.+.+||+.+++ |..- .+.......+...++...++|+.+ ..+++||+.+.+ |..-..- .........
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeEE
Confidence 57889988775 6532 222211112233343344445532 358899987763 7532210 011111111
Q ss_pred cCCCEEEE-eccCC-----eEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEE-ecC----------------
Q 003331 568 APRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVA-STS---------------- 621 (829)
Q Consensus 568 ~~~~~i~~-gs~~g-----~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~-t~~---------------- 621 (829)
.-++.||+ |+.++ .+.+||+.+. .|..-.. .... ...+.. ++.||+. +.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence 12356665 55443 4889998876 4775332 1111 112222 3777763 322
Q ss_pred -------CeEEEEEccCCCceEEEeeccCCcc-eeeeeeeecCCEEEE-EeeC------CeEEEEc-CC-CCEEEEeecC
Q 003331 622 -------GRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVIC-CLVD------GHVVALD-SS-GSIIWRCRTG 684 (829)
Q Consensus 622 -------g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~-~~~~------g~i~~~d-~~-g~~~w~~~~~ 684 (829)
..+.+||+.+ -.|..-...+. ........-++.||+ |+.+ ..+.+|| .+ . .|+.-..
T Consensus 425 ~~~~~~~~~ve~YDP~t----d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~ 498 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVN----NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITT 498 (557)
T ss_pred cccccccceEEEECCCC----CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccc
Confidence 2477888876 35765332211 111222233555655 4322 2367888 44 2 3764322
Q ss_pred C--ceeecCcccccCCCeEEEE-eeCC--eEEEEeCCCCc
Q 003331 685 G--PIFAGPCTSFALPSQVLIC-SRNG--SIYSFEQESGN 719 (829)
Q Consensus 685 ~--~~~~~~~~~~~~~~~i~~~-t~~g--~l~~~d~~tG~ 719 (829)
- +..... ....++.||+. +.+| .+-+||+.+.+
T Consensus 499 m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 499 TESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence 1 111111 12236677754 4455 57777776653
No 397
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=97.03 E-value=0.0012 Score=42.13 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEI 512 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~ 512 (829)
.++.+|+++.+|.++++|..+|+.+|++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4668999999999999999999999985
No 398
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.02 Score=60.84 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=93.0
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...+..|+..|.|..|+...|++.|++..+. ..+.......+-+.+|.++.|..+..|+.++++.............+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 3467889999999999999999999987543 22333333455568999999999999999999887666656666677
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
.++.++++.+.+++ +.|..||.++++.+-+|..++....+..
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 77777778888776 5799999999999999988776555443
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.02 E-value=0.64 Score=49.64 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=101.4
Q ss_pred CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-eeeeeeecCCEEEEEeeCCeEEEEc-C----------------
Q 003331 612 HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCLVDGHVVALD-S---------------- 673 (829)
Q Consensus 612 ~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~~~~~~g~i~~~d-~---------------- 673 (829)
.+.|.|-+.||.+..|+-+. ......++.-.. .........+.+++++.+..+.+|. +
T Consensus 145 ~~~IcVQS~DG~L~~feqe~----~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES----FAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTE 220 (418)
T ss_pred ceEEEEEecCceEEEEeCCc----EEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccc
Confidence 46788999999999998664 222332222111 2223444556666666666666653 1
Q ss_pred ----CCC---EEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc-ccccccccccc
Q 003331 674 ----SGS---IIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS-AYIDEHLQLKL 744 (829)
Q Consensus 674 ----~g~---~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~~~~~~ 744 (829)
+++ .-|.+..+..+....++... ....|++-+. .++++++ .+|+++|..+.+-...+. ++....
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~-~~G~l~~~krLd~~p~~~~~Y~~~~----- 293 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLK-DNGSLRFQKRLDYNPSCFCPYRVPW----- 293 (418)
T ss_pred ccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEc-CCCeEEEEEecCCceeeEEEEEeec-----
Confidence 223 24898888876655443321 2234555443 4699999 479999987765432221 111100
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE----ECCEEEEeeeCCeEEE
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM----IGGRVFVGCRDDYIYC 818 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~l~vg~~~g~l~~ 818 (829)
.........+.+++.++.|.+|.-. ++.|...++...+.--+. .+|.|.+-+.+|.|-+
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d~---------------~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYEDT---------------TLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeCC---------------eEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEE
Confidence 0000012358899999999999533 667777764432221111 2566666666776654
No 400
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.93 E-value=0.0016 Score=47.95 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=43.3
Q ss_pred cceeccCCCccccCCChHHHHHHHHHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 304 VEEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 304 ~~~i~~~~~Ff~lGgdSl~a~~l~~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+++|....|.||+.+|+|+.++ .++...+.++||+.+--..+....
T Consensus 15 ~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~G~~i~F~~La~~PTl~aW~qLl~~~~ 70 (74)
T COG3433 15 VEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFAQLAANPTLAAWWQLLSTRS 70 (74)
T ss_pred hhhcCchhhHHHhchhHHHHHHHHHHHHHcCCcccHHHHHhCccHHHHHHHHHhcc
Confidence 366888899999999999999999876 488899999999998777766543
No 401
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.19 Score=55.39 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=95.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEE--eeCC--cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAV--LADF--SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~--~~~~--~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.-.|.++..+|+|..+|...+..+-.+..+.......+. ..+. ..+.+-.....|..||..||+..|+++....+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 345667777899999998887655333333222122222 1121 244454556789999999999999998877776
Q ss_pred eeeeeec--CCCEEEEeccCCeEEEEEc-C------CCeEEEeecc-------------CCccccc------------ce
Q 003331 562 CQPVVDA--PRQLIWCGSHDHNLYALDF-R------NYRCVYKLPC-------------GGSIFGS------------PA 607 (829)
Q Consensus 562 ~~~~~~~--~~~~i~~gs~~g~l~~~d~-~------tg~~~w~~~~-------------~~~~~~~------------~~ 607 (829)
+..-+++ ....++.|+ .|.+...+. . .|+....... +....+. ..
T Consensus 159 s~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeCCCCcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 6444433 223333333 344443332 1 1222221111 0011111 11
Q ss_pred eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 608 IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 608 ~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+.+....+.+.+....++.+|++- -..+-...... ..|....+....+.+|+.-.+|.+..+-
T Consensus 238 f~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 233334444555566799999875 33444433322 2233444444556677776677665543
No 402
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=96.90 E-value=0.0018 Score=51.19 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++.+.++++.++.++.+ .+.++.+|+ ++|.|||..++|...+ .++...+...+|+..++.++.++
T Consensus 3 ~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 56778888888888774 588888986 6999999999998765 36778899999999999998764
No 403
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.2 Score=49.22 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=132.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEE----EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEc---CCCcEE--
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLW----EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDY---LTGDIY-- 551 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w----~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~---~tG~~~-- 551 (829)
++.++..+...+.|+.|..|+.++=...- +.+++-.-...+.+++|-.-+++.+. ...||.|.. ++|..-
T Consensus 94 FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~ 173 (420)
T KOG2096|consen 94 FSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH 173 (420)
T ss_pred EcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc
Confidence 34467788888899999999987622110 01111111224556666555555544 345665542 234322
Q ss_pred ---EE-EecC---CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 552 ---WT-FQTC---GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 552 ---w~-~~~~---~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
|. .+.+ .......-..+...+|..++.|..|..||.+ |+.+-.++..........+++++..|.+....-.+
T Consensus 174 ~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 174 FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCc
Confidence 21 0011 1111112223445667778888899999988 88888877765555556677766667666655556
Q ss_pred EEEEcc-CCCceE-----EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEee-------cCC-c---e
Q 003331 625 TAISVK-ALPFHT-----LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR-------TGG-P---I 687 (829)
Q Consensus 625 ~~~~~~-~~~g~~-----~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~-------~~~-~---~ 687 (829)
.+|.+- ++.|+. ....+.+.......+++.+..++...+.||....||.+= .++.. .+. + .
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV--rY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV--RYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc--eEecCCCchHhhcCCcchhhc
Confidence 666542 112432 122222333345567777788889999999998887221 11111 110 0 0
Q ss_pred eecCc-ccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 688 FAGPC-TSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 688 ~~~~~-~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
-+.|+ +....++.++..+....|..|..++|+..-
T Consensus 331 g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred CCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 11111 112235677777777789999988887653
No 404
>PRK05883 acyl carrier protein; Validated
Probab=96.88 E-value=0.0027 Score=51.59 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
...++..++.+++++.|++ ..|.++++|+ ++|.|||..+.+...| +++...+...+|+..|+.++..+.
T Consensus 11 ~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~ 88 (91)
T PRK05883 11 SPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKV 88 (91)
T ss_pred CHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHc
Confidence 4567889999999999987 5688999995 7999999988887654 477888999999999999998754
No 405
>PRK12449 acyl carrier protein; Provisional
Probab=96.88 E-value=0.0021 Score=51.22 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++.+++.+++++.++. ..+.++.+|. ++|.||+..++|...+ .++...+.+.+|+..++.++.++
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 78 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 45677888888888875 4688899996 9999999999988765 36778899999999999999764
No 406
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.72 E-value=0.18 Score=55.84 Aligned_cols=144 Identities=15% Similarity=0.219 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc---eeeeeeeec
Q 003331 579 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA---FASLCITSA 655 (829)
Q Consensus 579 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~---~~s~~~~~~ 655 (829)
....+.+| .+|.++|............... .++.+++++. ..++.+|.. |+.+|.+...... .......++
T Consensus 127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l-~nG~ll~~~~-~~~~e~D~~---G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLID-NNGDVRWYLPLDSGSDNSFKQL-PNGNLLIGSG-NRLYEIDLL---GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEE-TTS-EEEEE-GGGT--SSEEE--TTS-EEEEEB-TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CceEEEEC-CCccEEEEEccCccccceeeEc-CCCCEEEecC-CceEEEcCC---CCEEEeeecCCcccccccccEECCC
Confidence 56789999 7799999987654332222222 3466777665 679999987 8999998877633 344555566
Q ss_pred CCEEEEEee-------------CCeEEEEcCCCCEEEEeecCCce---ee---------c-------------Cccc-cc
Q 003331 656 NRHVICCLV-------------DGHVVALDSSGSIIWRCRTGGPI---FA---------G-------------PCTS-FA 696 (829)
Q Consensus 656 ~~~l~~~~~-------------~g~i~~~d~~g~~~w~~~~~~~~---~~---------~-------------~~~~-~~ 696 (829)
++.++.+.. ...|+-+|.+|+++|........ .. . ..+. ..
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 667766662 34577788899999876532111 00 0 0011 12
Q ss_pred CCCeEEEEeeCC-eEEEEeCCCCcEEEEEecCC
Q 003331 697 LPSQVLICSRNG-SIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 697 ~~~~i~~~t~~g-~l~~~d~~tG~~~w~~~~~~ 728 (829)
.++.|++.+... .|..+|.+++++.|.+-.+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 367788887754 89999999999999886544
No 407
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.72 E-value=0.084 Score=53.01 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCeEEEEeeCCeEEEEeCCCCcE---EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003331 698 PSQVLICSRNGSIYSFEQESGNL---LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
++.+..++-||.|..||.+.+.. +.....++.+....+.. ...+|+.|..+|.+.+||++.-..+
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr------------~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR------------REPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC------------CcceeeecCCCceEEEEEhhhccCC
Confidence 45666778899999999998833 32322333332222221 2458999999999999999854333
Q ss_pred cccccccccceeeeeeccCCcccccceEE---CCEEEEeeeCCeEEEEeccc
Q 003331 775 KENQSKDHMVQEFAKLELQGDIFSSPVMI---GGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~l~vg~~~g~l~~~d~~t 823 (829)
+....++.+..-+++.-.. +..+-+++.|+.+..||+..
T Consensus 338 ----------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 ----------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ----------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 2334444443333333332 56777888899999999854
No 408
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.70 E-value=0.072 Score=58.85 Aligned_cols=142 Identities=18% Similarity=0.274 Sum_probs=80.4
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee---eeeeeeecCCC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---KCQPVVDAPRQ 571 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~ 571 (829)
.+..+++|. +|.++|................+ +.++++.. ..++.+| -.|+++|.+..++.. .......+.++
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~n-G~ll~~~~-~~~~e~D-~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPN-GNLLIGSG-NRLYEID-LLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TT-S-EEEEEB-TEEEEE--TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCC-CCEEEecC-CceEEEc-CCCCEEEeeecCCcccccccccEECCCCC
Confidence 567899996 59999998776543222334444 45666654 8899999 579999998877633 22223344455
Q ss_pred EEEEecc-------------CCeEEEEEcCCCeEEEeeccCCcc---------------------------cccceeecC
Q 003331 572 LIWCGSH-------------DHNLYALDFRNYRCVYKLPCGGSI---------------------------FGSPAIDEV 611 (829)
Q Consensus 572 ~i~~gs~-------------~g~l~~~d~~tg~~~w~~~~~~~~---------------------------~~~~~~~~~ 611 (829)
.++.+.. ...|..+| .+|+++|........ ..++.+++.
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 6665551 24689999 999999986542100 123345555
Q ss_pred CCEEEEEecC-CeEEEEEccCCCceEEEeeccC
Q 003331 612 HDVLYVASTS-GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 612 ~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
++.|++.+.. ..|+.+|..+ ++..|....+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t--~~i~Wilg~~ 312 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRT--GKIKWILGPP 312 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TT--S-EEEEES-S
T ss_pred CCeEEEEcCcceEEEEEECCC--CcEEEEeCCC
Confidence 6778887774 4799999777 9999988654
No 409
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.013 Score=61.64 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=113.9
Q ss_pred ccccccccccccccc-cccccceEEeeCCCeEEEEecCCCcEEEEEC------CCCc---EEE-EEEcCCceeeceEEee
Q 003331 458 KRGFIQELWKVHMES-CVDASPLVVLKDSDIYLFVGSHSHKFICADA------KRSS---VLW-EIKLEGRIECSAAVLA 526 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~-~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~------~tg~---~~w-~~~~~~~~~~~~~~~~ 526 (829)
....++.+|+|.-.+ .|. +|+.......+|.|++||.|.+|+. .+.. .+- .+..+..-.....++.
T Consensus 330 ~~~~~epi~tfraH~gPVl---~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 330 AEKDVEPILTFRAHEGPVL---CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred cccceeeeEEEecccCceE---EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc
Confidence 345677778887433 222 1222345789999999999999943 2211 110 1111112222344555
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee--eeeeeecCCCEEEEeccCCeEE-EEEcCCCeEEEeeccC---C
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK--CQPVVDAPRQLIWCGSHDHNLY-ALDFRNYRCVYKLPCG---G 600 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~i~~gs~~g~l~-~~d~~tg~~~w~~~~~---~ 600 (829)
...++...+.||+++.|+...... -+|.....-. .+.-+....-.+.+.+..-..+ .+|.+++..+..+... +
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 555788888899999999665555 2332221111 1111111110111111111112 2223333322222111 0
Q ss_pred ----cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 601 ----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
......+..+..+..|.+-.++.+..+|-.+ |+++.........+.+.++.+++.++..++.++.+..+.
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccc--cccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 1112223334456777788888899998777 888877766666677888888888888898888887765
No 410
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=96.69 E-value=0.0036 Score=39.86 Aligned_cols=27 Identities=44% Similarity=0.789 Sum_probs=24.6
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
++.+|+++.++.|+++|.++|+++|++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 358999999999999999999999975
No 411
>PHA02713 hypothetical protein; Provisional
Probab=96.67 E-value=0.12 Score=58.58 Aligned_cols=29 Identities=7% Similarity=0.205 Sum_probs=20.8
Q ss_pred cceEECCEEEE-eeeCC--eEEEEeccccccc
Q 003331 799 SPVMIGGRVFV-GCRDD--YIYCIALETQHLE 827 (829)
Q Consensus 799 s~~~~~~~l~v-g~~~g--~l~~~d~~tg~~~ 827 (829)
..++.+++||+ |+.+| .+.+||+.+++..
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 44557888887 45565 6889999888753
No 412
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.4 Score=51.75 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=87.2
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
..+|.+|.++|+..-.....+ ....|.+.+++..|.+ ...+| .||.+|..+++ +++......+...|.+.+++..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCE
Confidence 359999999887655444332 3345666666655544 44444 48999988766 5665555556668889888888
Q ss_pred EEEEecCC---eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-Ce--EEEEc-CCCCEEEEeecC
Q 003331 615 LYVASTSG---RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GH--VVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 615 l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~--i~~~d-~~g~~~w~~~~~ 684 (829)
|+..+..+ .|+.++++. ...-++.........+.++++++.+.+.+.. |. +..+| .++.. |+.-..
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g---~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~ 368 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEG---SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTS 368 (425)
T ss_pred EEEEeCCCCCcceEEECCCC---CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccc
Confidence 87776543 488888875 3223333333323367778888888777643 33 55566 44443 554433
No 413
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.61 E-value=0.062 Score=56.35 Aligned_cols=150 Identities=8% Similarity=0.065 Sum_probs=84.8
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
+.+.+.+.||.+..++ ++|++....+.+.....+.-+.+++.-+++.+.||.+..|. ++|-+.-.....+....+...
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 3577888899999998 78888766665544444444555566677888899999998 555443222111111112222
Q ss_pred ecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecC
Q 003331 609 DEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 609 ~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~ 684 (829)
.++. ..+|+.. +.++.=.+.....-..|+.. .....+.......+.+..|..|-...+||..|..++.....
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE 226 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccceeEEecc--CcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence 2222 3344332 33443322221234556542 22233444444566777777788888888767777655443
No 414
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.12 Score=57.60 Aligned_cols=203 Identities=15% Similarity=0.226 Sum_probs=100.8
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccC-C----eEEEEEcCC---C--
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHD-H----NLYALDFRN---Y-- 590 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~-g----~l~~~d~~t---g-- 590 (829)
.+++..++.|++|+.+|.|..++ ..-+.+..+...... ....-.......+++-..| + .|..||++. +
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 45667778999999999999998 333443333332211 1111112222334332222 2 356666532 1
Q ss_pred -eEE---Eeecc----CCcccccceeecCCCEEEEEecCCeEEEEE--ccCCCceEEEeecc-CCcceeeeeeeecCCE-
Q 003331 591 -RCV---YKLPC----GGSIFGSPAIDEVHDVLYVASTSGRLTAIS--VKALPFHTLWLHEL-EVPAFASLCITSANRH- 658 (829)
Q Consensus 591 -~~~---w~~~~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~--~~~~~g~~~w~~~~-~~~~~~s~~~~~~~~~- 658 (829)
.++ ..+.. ...+.++.+++.+...+.+|-.+|.|+++. +....|.. ..+.. +........+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEecCCcee
Confidence 223 11111 123455566777778899999999998885 11111221 11211 1222233344444444
Q ss_pred EEEEeeCCeEEEEcCCCCE-EEE-eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 659 VICCLVDGHVVALDSSGSI-IWR-CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~-~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
+++.|. ..|..|.-+|+. .-+ ....+ .+..|........=++++.+..|+.|+.+.-+.-|.+..+..
T Consensus 187 lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 187 LFVATT-EQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEEec-ceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 455554 556666622332 222 22222 222333222222223344455699999887777888775544
No 415
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.59 E-value=0.94 Score=46.31 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred CeEEEEecCCCcEEEEECCCC-------cEEEE--EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-------C-
Q 003331 486 DIYLFVGSHSHKFICADAKRS-------SVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------G- 548 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg-------~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------G- 548 (829)
.+.+..|+.|..+..|-...+ ++... +..+.+....+-++.+|+.+..|..+|.+.+|-..+ .
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 347777777777776644332 22221 223444455666788888999999899999997551 2
Q ss_pred ----cEEEEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 549 ----DIYWTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 549 ----~~~w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
+..|... .+..-..-.+...++..+.+++-|..++.||...|+..-....+
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 3335422 11111122344556778888999999999999999887665444
No 416
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.59 E-value=0.29 Score=50.53 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=83.3
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcE-------EEEEecCCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCC--eEEEeec
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDI-------YWTFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNY--RCVYKLP 597 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~-------~w~~~~~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg--~~~w~~~ 597 (829)
.+.+..++.|+.+..||...... +-.+..+..+..-..+..-. ..+-..+.|+.|..||..++ ++.....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 35788899999999999754322 11233333322222222222 33344577899999999853 2222233
Q ss_pred cCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEEc
Q 003331 598 CGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVALD 672 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~d 672 (829)
.+...+.+..+.+-+ ..|..++.|++|..||+.+.. +.+..+............++....++ .++.++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 333333333443333 445667779999999998732 34445555555445555666555544 445689999999
No 417
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.1 Score=48.33 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=94.5
Q ss_pred CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec----CC---eeeeeeee
Q 003331 494 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT----CG---EVKCQPVV 566 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~----~~---~~~~~~~~ 566 (829)
.|..||.-|-.+|+....+..+..-. -..++-++-.+..|+.|.+|.+||+.-...+.+... ++ ....+.++
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghi-lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHI-LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccE-EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 45678877877787765555443321 234455566788899999999999876666655332 12 33455566
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
++.+..+..|-.|..-..||+..|+.+.++..+...+...-+++...+++.++.+..|..-|+.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 7666667777778888889999999999988776665556666645667778888777776666
No 418
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.24 Score=50.33 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=53.1
Q ss_pred ceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 521 SAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 521 ~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
...+++.. +.+.+++.+..|..+|.++-.+.-.+..+..+.+..---++.+.||.|..+|.|+.||...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 34454433 4688888899999999999888888877766665543334678899999999999999864
No 419
>PRK05828 acyl carrier protein; Validated
Probab=96.52 E-value=0.0057 Score=48.62 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHhc-c--cCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGH-A--LMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~-~--l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.++++++.++ . +..+.+..+.+|.+||.|||..++|...| +++...+....|+..+..++....
T Consensus 4 ~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 4 MEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred HHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 4667788888876 3 34477888899999999999999998754 466677899999999999987654
No 420
>PRK07081 acyl carrier protein; Provisional
Probab=96.51 E-value=0.0045 Score=49.38 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=48.3
Q ss_pred HHHHHHHhccc--Cc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHhhcC
Q 003331 292 QVIRKAFGHAL--MV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLEKKG 355 (829)
Q Consensus 292 ~~l~~~~~~~l--~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~~~~ 355 (829)
+.++++..+.+ +. +.+..+.+|+++|.|||.+++|...| .++...+.. ++|+..++.++.....
T Consensus 3 ~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 3 NTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred HHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 45556666553 22 56889999999999999999998765 355565643 8999999999987653
No 421
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.50 E-value=0.052 Score=55.73 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=87.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE-------EEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCC--cEEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV-------LWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTG--DIYWTF 554 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~-------~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG--~~~w~~ 554 (829)
..+++..++.++.+..||...... +-.+..+..++.-+.+..- .+.+-..+.|+.|..||..++ +.....
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 467888999999999999764322 1123334433333333332 234445567899999999853 222223
Q ss_pred ecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccC
Q 003331 555 QTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKA 631 (829)
Q Consensus 555 ~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~ 631 (829)
..+..-.-+..+.+ ++..|.+|+.|+.|..||+.+-+ ++.++..+.........++....|+ .++.|+.+.+||+..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 33332233334443 34566778889999999998743 4445544444444444555445544 455688999999775
No 422
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.50 E-value=1.2 Score=45.51 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE----------
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF---------- 554 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~---------- 554 (829)
.+.+|++|+.+| |+.++.... ..|..-..........+..+-+.+++-+ |+.|+++++.+-...-..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP-SKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC-ccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 578999999988 999998222 2222222211133444545545555554 688999987654333210
Q ss_pred ---ecCCeeeeeeeee----cCCC-EEEEeccCCeEEEEEcCC--C---eEEEeeccCCcccccceeecCCCEEEEEecC
Q 003331 555 ---QTCGEVKCQPVVD----APRQ-LIWCGSHDHNLYALDFRN--Y---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 555 ---~~~~~~~~~~~~~----~~~~-~i~~gs~~g~l~~~d~~t--g---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
... .......+. ..+. .+.++. ...|..|.... + +....+.....+. +..+. ++.+.+++.+
T Consensus 83 ~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~-~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 83 LPTKLP-ETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPS-SIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccc-ccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcE-EEEEe--CCEEEEEeCC
Confidence 010 011111111 1122 233333 33444443322 2 2334444443322 23333 4888888866
Q ss_pred CeEEEEEccCCCceEEEeeccCCcc---------eeee-eeeecCCEEEEEeeCCeEEEEcCCCC------EEEEeecCC
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPA---------FASL-CITSANRHVICCLVDGHVVALDSSGS------IIWRCRTGG 685 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~---------~~s~-~~~~~~~~l~~~~~~g~i~~~d~~g~------~~w~~~~~~ 685 (829)
+ .+.+|+++ +....-....... ...+ .+...++.+.++. +..-..+|..|+ +.|......
T Consensus 158 ~-f~~idl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 G-FYLIDLNT--GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred c-eEEEecCC--CCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 5 78889887 5544333222111 0011 1122334555543 333333444443 334322111
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003331 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
-.+. ...|++.+ ++.|-.++..+|+++-....+
T Consensus 234 ~~~~--------~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 234 VAYS--------SPYLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEE--------CCEEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 1111 22455444 456999999999887665543
No 423
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.19 Score=54.89 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=69.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-EEEEec-----C
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI-YWTFQT-----C 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-~w~~~~-----~ 557 (829)
.+.++.+|+..|.||.|+..+|+.+-... ...++.+..+++.+...+.+|+..|.|..+-...+.. .-.+-+ +
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 46789999999999999998877543222 2344555666777766777888777665554443322 111111 2
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
+....+..++.+...+|.|...|.|.+....+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33445566777788899999999888776665
No 424
>PRK07117 acyl carrier protein; Validated
Probab=96.48 E-value=0.0071 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHhccc-Cc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHAL-MV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l-~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++...++++..+.+ ++ ..|.++.+|.+||.|||..++++..+ +++-..+-+-.|+..+..++.++
T Consensus 4 ~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~ 78 (79)
T PRK07117 4 QRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAK 78 (79)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHh
Confidence 456788888888888 46 56999999999999999999987653 46777888899999999998764
No 425
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.082 Score=58.61 Aligned_cols=119 Identities=9% Similarity=0.154 Sum_probs=73.7
Q ss_pred ccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceee-ceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 466 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC-SAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 466 W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
|+-.+-+....+-+. .+....++++.|..|-+..+|++||++.|+.-+...... ...+. -++......++.||
T Consensus 28 wr~~~vG~~k~~~~~-~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~-----~~iS~dg~~lr~wn 101 (910)
T KOG2103|consen 28 WRQQLVGVKKVNFLV-YDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT-----NTISVDGRYLRSWN 101 (910)
T ss_pred hhhhcccceeEEEEe-ecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee-----EEEccCCcEEEeec
Confidence 766654433333333 344678999999999999999999999999765543211 11111 13333344689999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.++|.+.|.......... ..+....+..+++. +....|+..|.-..
T Consensus 102 ~~~g~l~~~i~l~~g~~~-~~~~v~~~i~v~~g-------~~~~~g~l~w~~~~ 147 (910)
T KOG2103|consen 102 TNNGILDWEIELADGFKG-LLLEVNKGIAVLNG-------HTRKFGELKWVESF 147 (910)
T ss_pred CCCceeeeecccccccce-eEEEEccceEEEcc-------eeccccceeehhhc
Confidence 999999999877655222 22222233333322 45567888887544
No 426
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.43 E-value=0.051 Score=52.69 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=65.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEE--EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcC-CCcEEEE-EecCCe-
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLW--EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL-TGDIYWT-FQTCGE- 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w--~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~-tG~~~w~-~~~~~~- 559 (829)
+..++++..+|.+...+-..+.+.- +.+.++--...+.++. +.+.||.|+.|+.+.+||.. -++.+|+ ...+..
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 3446666666666644433332211 1122221112333332 33589999999999999987 5678886 222222
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCGG 600 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~ 600 (829)
+.+...-.+....|++|++|..+..||..+ |+++.....++
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G 254 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG 254 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc
Confidence 222111122456899999999999999873 55554444433
No 427
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.42 E-value=0.63 Score=46.00 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=106.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC-CCcEEEEEecCCeeeeeeeeec--CCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQTCGEVKCQPVVDA--PRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~--~~~~ 572 (829)
+.|..||-...+++-++.....+. ++.+.. +.|++-. .+.||.|... +-+.+..+++....+....+.+ ....
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~-~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIK-AVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEecccee-eEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 357888866666666666555442 333433 3555554 6789999876 5566666665443332222222 2233
Q ss_pred EEE-eccCCeEEEEEcCCCeEE--EeeccCCcccccceeecCCCEEEEEecCCeE-EEEEccCCCceEEEeeccCC--cc
Q 003331 573 IWC-GSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRL-TAISVKALPFHTLWLHELEV--PA 646 (829)
Q Consensus 573 i~~-gs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l-~~~~~~~~~g~~~w~~~~~~--~~ 646 (829)
|.+ |..-|.|...|...-+.- -.+..+...++...+.-++..|..++..|++ .+||..+ |+.+.....+. ..
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--GTLLQELRRGVDRAD 228 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC--CcEeeeeecCCchhe
Confidence 333 444588888887654431 2334445555666666656677788888876 4678777 88877664432 33
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
....+++++...+.+.+..|++.+|.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 45677888888999999999999887
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.16 Score=46.92 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=92.9
Q ss_pred CCeEEEEecC---CCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCe
Q 003331 485 SDIYLFVGSH---SHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.++.++.++. ...|+.+|+.+|+++|+.++.. .+. .-.+..-++.+|.-++ +|.-+.+|+.|-+++-++...++
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-gEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-GEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCcccc-ccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 3557777664 2469999999999999988772 322 2234445668998887 56668999999988887777665
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccc-eeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSP-AIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~-~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
-.. +.. ++..++.++....++.-|+++=...-+... .+...... -+.--++.+|..-+ ...|..+++++ |+
T Consensus 133 GWg--Lt~-d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s--Gr 207 (262)
T COG3823 133 GWG--LTS-DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS--GR 207 (262)
T ss_pred cee--eec-CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC--Cc
Confidence 433 222 345577777677888889887544333322 11111110 01111255554332 23478888887 87
Q ss_pred EEEeecc
Q 003331 636 TLWLHEL 642 (829)
Q Consensus 636 ~~w~~~~ 642 (829)
..--++.
T Consensus 208 V~~widl 214 (262)
T COG3823 208 VVAWIDL 214 (262)
T ss_pred EEEEEEc
Confidence 6655544
No 429
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.02 Score=65.53 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=119.8
Q ss_pred cEEEEEEeCCEEEEEEcCC---Cc---EEEEEe-cCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 529 SQVVVGCYKGKIYFLDYLT---GD---IYWTFQ-TCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~t---G~---~~w~~~-~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
|.|.-|+.||.|..||+.. +. .+-++. ..+.+.. .-|... ++.+..|..+|.|+.||..+-+.- +..+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~ 157 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGS 157 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCC
Confidence 4677778899999999754 21 122222 2344443 333333 446777888999999998763221 11111
Q ss_pred c----ccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCc--ceeeeeeeec-CCEEEEEeeCCe---EE
Q 003331 601 S----IFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSA-NRHVICCLVDGH---VV 669 (829)
Q Consensus 601 ~----~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~-~~~l~~~~~~g~---i~ 669 (829)
. .+........- ..+..++.+|...+||++. .+.+-.+..... ..+.....++ -..+++++.+.+ |.
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 0 00111111111 1233456677888999886 333333322221 1123333333 235666665543 44
Q ss_pred EEc-C-CCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003331 670 ALD-S-SGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 670 ~~d-~-~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
.|| + .-..+-.++. ...+.+...... ++..+..+..|+.+.|||.+||+++.++...++.+... .-
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv----------~w 304 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV----------QW 304 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCC-CchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee----------ee
Confidence 555 2 1122222211 112333332222 23456777789999999999999998776643322111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+-..-+.+.+.+-+|.|-++...+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 1222557778888999999988755
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.34 Score=44.85 Aligned_cols=140 Identities=12% Similarity=0.107 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003331 580 HNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
..|+.+|..+|+.+|...... ..+.--.. .-++.+|.-|+ +|.-+.+|+++ .+.+-.+...... -.+..++.
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeG---WgLt~d~~ 141 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEG---WGLTSDDK 141 (262)
T ss_pred ceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEEeccceeEEEChHH--hhhhcccccCCcc---eeeecCCc
Confidence 469999999999999887762 23322221 22578888887 45557788877 6555544443322 13445677
Q ss_pred EEEEEeeCCeEEEEc-CCCCEEEEee---cCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEec
Q 003331 658 HVICCLVDGHVVALD-SSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.++++.....++..| .+-...-+.+ .+.++....- ..-.+|.+|.-- ....|..+++++|+++-.++.
T Consensus 142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE-LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE-LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc-eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 888887666777777 4433322222 1222222211 112355665542 245799999999999754544
No 431
>PRK05350 acyl carrier protein; Provisional
Probab=96.33 E-value=0.0078 Score=48.10 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+++.++.++.+++ ..+.++.+| -++|.|||..++|...| .++...+...+|+..++.++.+..
T Consensus 5 ~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 5 EEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 45677888888888876 468888886 79999999999988754 467778999999999999998754
No 432
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.29 E-value=0.031 Score=59.56 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=106.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEE-------EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w-------~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
++.++.+++.+|.|..|-...+-.-- .+..+..-+++.-+.+ ..+.+.+.++|-+|..||+.+++..-++..
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 45678899999988888765432111 1112221122222222 123577889999999999999999887776
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCccc-ccceeecCCCEEEEEecC----CeEEEEEcc
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIF-GSPAIDEVHDVLYVASTS----GRLTAISVK 630 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~----g~l~~~~~~ 630 (829)
+..-....++++++..+.+-+.||.|+.|.+.+++. +..-....... +-+.+.-++..|++...+ .++..||.+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 655555567787888888889999999999988743 22221111111 111222223455554433 356677776
Q ss_pred CCCceEEEeeccCC-cceeeeeeeecCCEEEEEe-eCCeEEEEc
Q 003331 631 ALPFHTLWLHELEV-PAFASLCITSANRHVICCL-VDGHVVALD 672 (829)
Q Consensus 631 ~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~~d 672 (829)
+..+..+....+.. +...-+....+.+.+++.. .|..|++|.
T Consensus 799 ~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 799 TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 65555555443321 1112223333445555433 345667765
No 433
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.34 Score=48.86 Aligned_cols=150 Identities=7% Similarity=0.010 Sum_probs=89.8
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC------CcEEEEEec-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLT------GDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t------G~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
..-++.++..++.|+.|-.+..|+... -+++-.... +.....+..+...+..+|.|..++.+..-|+++.+.+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi 140 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI 140 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee
Confidence 345666667788888888888887432 222221111 1123344556666778999999999999999999888
Q ss_pred EeeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCC--ceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCe
Q 003331 594 YKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP--FHTLWLHELEVPAFASLCITSA-NRHVICCLVDGH 667 (829)
Q Consensus 594 w~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~--g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~ 667 (829)
..+.... .++. ....+-++++.+.+.++.|..||..... +.+.--. .....|.+..+.+. ...+.+.+..++
T Consensus 141 ~V~~~~~~~~~VY~-m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-N~~~~F~t~~F~P~~P~Li~~~~~~~G 218 (609)
T KOG4227|consen 141 YVANENNNRGDVYH-MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-NSGKNFYTAEFHPETPALILVNSETGG 218 (609)
T ss_pred eeecccCcccceee-cccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-CCCccceeeeecCCCceeEEeccccCC
Confidence 8775533 2221 2222335888889999999999876421 2222211 11223344444333 334556666777
Q ss_pred EEEEc
Q 003331 668 VVALD 672 (829)
Q Consensus 668 i~~~d 672 (829)
+.+||
T Consensus 219 ~~~~D 223 (609)
T KOG4227|consen 219 PNVFD 223 (609)
T ss_pred CCcee
Confidence 77777
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.17 E-value=0.46 Score=53.65 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=101.9
Q ss_pred CcEEEEECCCCcEEEEE--EcCC-ceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-eeeeeee
Q 003331 496 HKFICADAKRSSVLWEI--KLEG-RIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG-EVKCQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~--~~~~-~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~-~~~~~~~ 565 (829)
..+.+||+.+++ |.. ..+. +...++++. ++...++|+++ ..+.+||+.+++ |+.-..= .......
T Consensus 301 ~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 301 RSVECYDPKTNE--WSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFG 375 (571)
T ss_pred ceeEEecCCcCc--EeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccce
Confidence 468899998885 543 2222 222233333 33344457777 368899988887 8642110 1111111
Q ss_pred eecCCCEEEE-eccCC-----eEEEEEcCCCeEEEeeccCC--c-ccccceeecCCCEEEEEec-C------CeEEEEEc
Q 003331 566 VDAPRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPCGG--S-IFGSPAIDEVHDVLYVAST-S------GRLTAISV 629 (829)
Q Consensus 566 ~~~~~~~i~~-gs~~g-----~l~~~d~~tg~~~w~~~~~~--~-~~~~~~~~~~~~~l~v~t~-~------g~l~~~~~ 629 (829)
+..-+|.||+ |+.+| .+-+||+.+. .|..-..- . .....+.. ++.||+.+. + ..+.+||+
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcC
Confidence 1112356665 65554 4778888764 46554321 1 11112222 377776432 2 34778888
Q ss_pred cCCCceEEEeeccCCcce-eeeeeeecCCEEE-EEeeCC-----eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 630 KALPFHTLWLHELEVPAF-ASLCITSANRHVI-CCLVDG-----HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~-~~~~~g-----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
.+ -.|+.....+.. .......-++.|| +|+.++ .+.+|| .+. .|..-..-..-.+..-....++.+
T Consensus 452 ~t----~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 452 ET----NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVLGGKL 525 (571)
T ss_pred CC----CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCccccccccEEEECCEE
Confidence 86 357654432211 1112222344444 444443 267788 433 255432111111111111224566
Q ss_pred EEE-eeC-----CeEEEEeCCCCcEEEEEe
Q 003331 702 LIC-SRN-----GSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 702 ~~~-t~~-----g~l~~~d~~tG~~~w~~~ 725 (829)
|+. ..+ +.+-+||+.+.+ |+..
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~--W~~~ 553 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDT--WTEV 553 (571)
T ss_pred EEEecccCccccceeEEcCCCCCc--eeeC
Confidence 644 333 357777776653 5443
No 435
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=0.17 Score=57.80 Aligned_cols=211 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred ccccccccccccc---cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeece--EEeeCCcEEE
Q 003331 458 KRGFIQELWKVHM---ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA--AVLADFSQVV 532 (829)
Q Consensus 458 ~~~~~~~~W~~~~---~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~--~~~~~~~~v~ 532 (829)
++..+...|+.-. .....+.-++--....|.++++..-..|..||+..-++.-....+.....+. +-...++.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 4445555565421 1223334232223456788887766789999988766655444432211111 1113467899
Q ss_pred EEEeCCEEEEEEcCCC-----cEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec--c---CCc
Q 003331 533 VGCYKGKIYFLDYLTG-----DIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP--C---GGS 601 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG-----~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~--~---~~~ 601 (829)
+|..||.|..||...- -..|+-.... .+.....-..+-+.++.|+.+|.|+.||+..-...-... . .|.
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 9999999999996542 2334322211 122211111133468999999999999987631111111 1 022
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-------ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-------AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-------~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
......+......+..|+. +.+.+|+.. |+.+-.+..... ..++..+.+..-.+.+|+.|..|.+|.
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~---G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLS---GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecC---hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 2344555554455666665 778888876 554443332211 112233333344556666677777776
No 436
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.11 Score=52.90 Aligned_cols=153 Identities=11% Similarity=-0.001 Sum_probs=87.2
Q ss_pred eeCCCeEEEEecCCCcEEEEE-CCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-cCC-
Q 003331 482 LKDSDIYLFVGSHSHKFICAD-AKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-TCG- 558 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d-~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~~~- 558 (829)
+..++..|-+|..||.+.+|+ +..-..+-....+.. +-...+++|++.|..-+.| ....|+..+|..+-+.. ...
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e-V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~ 229 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE-VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD 229 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc-cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence 344567888999999999999 443333322222333 3367788898776665556 78999999995443222 111
Q ss_pred eeeeeeee--ecCCCEEEEec---cCCeEEEEEcCC--C--eEEEeecc-CCcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 559 EVKCQPVV--DAPRQLIWCGS---HDHNLYALDFRN--Y--RCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 559 ~~~~~~~~--~~~~~~i~~gs---~~g~l~~~d~~t--g--~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
......-+ ++....+++.. ..+.+..+|... + -..|+... ....+++..+++++..+.+||.+|.|.+++
T Consensus 230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 11111111 11123444432 123454444321 1 11222222 223567788888889999999999999999
Q ss_pred ccCCCceEEE
Q 003331 629 VKALPFHTLW 638 (829)
Q Consensus 629 ~~~~~g~~~w 638 (829)
..+ -+.+.
T Consensus 310 ~~~--lq~~~ 317 (398)
T KOG0771|consen 310 AKS--LQRLQ 317 (398)
T ss_pred ece--eeeeE
Confidence 776 44443
No 437
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.08 E-value=0.96 Score=43.22 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=75.8
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEec--CCeeeeeeeeecCCCEEEE--eccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEVKCQPVVDAPRQLIWC--GSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~--gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
..|.|. ..||.++..+... -.... .+. .....+.+++..+.+ |.....+..||.+ ++.+..+.. .....
T Consensus 33 ks~~~~--~~l~~~~~~~~~~-~~i~l~~~~~-I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~ 105 (194)
T PF08662_consen 33 KSYYGE--FELFYLNEKNIPV-ESIELKKEGP-IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNT 105 (194)
T ss_pred ceEEee--EEEEEEecCCCcc-ceeeccCCCc-eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceE
Confidence 444443 4688888655433 23333 223 344456666665433 4456789999986 677666643 33345
Q ss_pred ceeecCCCEEEEEec---CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 606 PAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
+..++++..+++++. .|.+..||.++ .+.+-..+. ........++++.++..++.
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 667777788887754 46799999886 666655433 22355667777777777654
No 438
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.06 E-value=1.8 Score=43.03 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=98.4
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-CCeEEEeeccCCcccccceeecCC-CE-
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPCGGSIFGSPAIDEVH-DV- 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~-~~- 614 (829)
+.|..||-...+++-++....+++..-+ ..+.|++.. .+.+|.|... +-+.+..+..-.+.-..+++...- ..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l---~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKL---RRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEE---cCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 4699999777777777777777665432 234454443 4567777655 344555544432222222222211 22
Q ss_pred EEE-EecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE-Ec-CCCCEEEEeecCCceeecC
Q 003331 615 LYV-ASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA-LD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 615 l~v-~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~-~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
|.+ |..-|.|.+.|+....-..-.....+....+...+...+..+..++..|++.. || .+|+++.++..+..-...-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 222 33457788877664111000122223333455566667788888999998765 67 8999998877554321111
Q ss_pred cccccCC-CeEEEEeeCCeEEEEeCCC
Q 003331 692 CTSFALP-SQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 692 ~~~~~~~-~~i~~~t~~g~l~~~d~~t 717 (829)
++.+..+ ..+.+.+..|+|+.+..+.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 2222223 3566778889999887654
No 439
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.03 E-value=2.4 Score=44.38 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=111.8
Q ss_pred cEEEEECCCCcEEEEEEcCCcee-eceE-Ee--e----CCcEEEEEEe---------C-CEEEEEEcCCC-----cE--E
Q 003331 497 KFICADAKRSSVLWEIKLEGRIE-CSAA-VL--A----DFSQVVVGCY---------K-GKIYFLDYLTG-----DI--Y 551 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~-~~~~-~~--~----~~~~v~vg~~---------d-g~l~~~d~~tG-----~~--~ 551 (829)
.|..+|..+.+.+-++.+...-. .+.+ +. . ...++++|+. . |.|+.|+..+. ++ +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 47788888888776666554311 1221 11 1 1357888864 2 88999998874 22 2
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCc-ccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
......+.+.+...+ ++.++++. ++.|+.++....+ .+-....... ...+.... ++.+++|.....+..+..
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 344556665554444 46666654 5678888877766 4443333222 22233333 479999987766776543
Q ss_pred cCCCceEEEeeccCCcc-eeeeeeeecCCEEEEEeeCCeEEEEc-C-------CCC--E--EEEeecCCceeec---Ccc
Q 003331 630 KALPFHTLWLHELEVPA-FASLCITSANRHVICCLVDGHVVALD-S-------SGS--I--IWRCRTGGPIFAG---PCT 693 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g~--~--~w~~~~~~~~~~~---~~~ 693 (829)
+....+.........+. ..+..+..+++.++++..+|.++.+. . .+. + .-.+..+..+... ...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 32112222222222222 23344442445888888899998876 2 122 2 2334444444332 111
Q ss_pred cc-cCC-----CeEEEEeeCCeEEEEeC
Q 003331 694 SF-ALP-----SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 694 ~~-~~~-----~~i~~~t~~g~l~~~d~ 715 (829)
.. ... ..++.+|.+|.|.++-+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEEEe
Confidence 11 111 24888999999987755
No 440
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=95.98 E-value=0.029 Score=61.93 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=72.5
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
++++-.+.+|+.|+.|..+..|...|+..+-....+..-.....+....-.+.++++|.-|.+|.+.+|.++-....+..
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG 275 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc
Confidence 33444567899999999999999999988876665544333445555545677788899999999999988765444433
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~ 588 (829)
...+..+.+-. ..+.||.+..||..
T Consensus 276 avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 276 AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ceeeeccCccc----cCCCCCceEecccc
Confidence 33334444311 44668888888865
No 441
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.91 E-value=2.3 Score=43.01 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=121.4
Q ss_pred CeEEEEecCCC-cEEEEECCCCcEEEEEEcC-Cc-eeeceEEeeCCcEEEEEEe-----CCEEEEEEcC-CCcEEEEEec
Q 003331 486 DIYLFVGSHSH-KFICADAKRSSVLWEIKLE-GR-IECSAAVLADFSQVVVGCY-----KGKIYFLDYL-TGDIYWTFQT 556 (829)
Q Consensus 486 ~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~-~~-~~~~~~~~~~~~~v~vg~~-----dg~l~~~d~~-tG~~~w~~~~ 556 (829)
...|.++-.-| .+..||..+|+..-....+ ++ +..-.+++.||..+|+... .|.|-.||.. +-+.+-.+.+
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 34455555444 5778999999887544433 22 3456788999999998754 3678899987 3444445555
Q ss_pred CCeeeeeeeeecCCCEEEEe------------------ccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCCCE
Q 003331 557 CGEVKCQPVVDAPRQLIWCG------------------SHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVHDV 614 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~g------------------s~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~~~ 614 (829)
.+.-.--..+.+++..|+++ +.+-.|..+|..+|+++-+... ....+-...++. ++.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~ 175 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGT 175 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCc
Confidence 44211112233344455554 3345688899999998766544 222334445554 466
Q ss_pred EEEEec-CCe-------EEEEEccCCCceEEEeeccCC-------cceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCE
Q 003331 615 LYVAST-SGR-------LTAISVKALPFHTLWLHELEV-------PAFASLCITSANRHVICCLVD-GHVVALD-SSGSI 677 (829)
Q Consensus 615 l~v~t~-~g~-------l~~~~~~~~~g~~~w~~~~~~-------~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~ 677 (829)
++++.. .|. +..++. |+.+-...... ....++++..+++.+.+.+.. +.+..|| .+|++
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 666542 221 222221 12111111111 123566777677777777654 5566787 88887
Q ss_pred EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 678 IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 678 ~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+-.......- . +....++ ..+.+..|.+..++..+.+.
T Consensus 252 ~~~~~l~D~c-G---va~~~~~-f~~ssG~G~~~~~~~~~~~~ 289 (305)
T PF07433_consen 252 LGSVPLPDAC-G---VAPTDDG-FLVSSGQGQLIRLSPDGPQP 289 (305)
T ss_pred eeccccCcee-e---eeecCCc-eEEeCCCccEEEccCccccc
Confidence 7544332110 0 1111222 55555566666666544433
No 442
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.88 E-value=0.46 Score=48.67 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCcEEEEECCCCcEEEEEEcCCce---------------------------eeceEEeeCCcEEEEEEeCCEEEEEEcCC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRI---------------------------ECSAAVLADFSQVVVGCYKGKIYFLDYLT 547 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~---------------------------~~~~~~~~~~~~v~vg~~dg~l~~~d~~t 547 (829)
++.++.+|+.||+++|+....+.+ ..++....+|++|+..-.-..|+++|.+|
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 456889999999999875432110 12333344556666665567899999999
Q ss_pred CcEEEEEec
Q 003331 548 GDIYWTFQT 556 (829)
Q Consensus 548 G~~~w~~~~ 556 (829)
|+++|+...
T Consensus 175 G~I~W~lgG 183 (299)
T PF14269_consen 175 GKIIWRLGG 183 (299)
T ss_pred CcEEEEeCC
Confidence 999998743
No 443
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=95.85 E-value=0.53 Score=53.91 Aligned_cols=181 Identities=11% Similarity=0.026 Sum_probs=108.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce--eeceEEeeCCc--EEEEEEeCCEEEEEEcCC-CcEEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI--ECSAAVLADFS--QVVVGCYKGKIYFLDYLT-GDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~--~~~~~~~~~~~--~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~ 559 (829)
.+..+++++.++.+..+|.+.+....+...+.+. .++..+..... +++.|+--+.|+.|++.- .+.. ....+..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG 176 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEG 176 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCC
Confidence 5678888888888999998877766554444432 22333333334 455666778899998751 1222 2333334
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee--ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+.+..++.++.+.|.|..++.|++++++..-.. .....++. .++.+ ..++.++.|-++.+|+.+ |+.+
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-~~~~~--n~i~t~gedctcrvW~~~---~~~l 250 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-CCFLP--NRIITVGEDCTCRVWGVN---GTQL 250 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-EEecc--ceeEEeccceEEEEEecc---ccee
Confidence 4445566667888999999999999999998765411 11122333 34444 488888888888888655 4433
Q ss_pred EeeccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 638 WLHELE-VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 638 w~~~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
-.+..+ ...........+.-.++.+..||++..++
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 333221 12222333333444556666778777776
No 444
>PRK07639 acyl carrier protein; Provisional
Probab=95.84 E-value=0.023 Score=45.58 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHhcccCc---ceeccCCCccc-cCCChHHHHHHHHHc----C--Ccchhh--hcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV---EEVLHHDNFFT-MGGNSIAAAHVAHNL----G--IDMRLI--YNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~---~~i~~~~~Ff~-lGgdSl~a~~l~~~l----~--~~~~~~--~~~pt~~~la~~l~~~~ 354 (829)
.++...++++.++.++. +++.++.+|++ +|.||+.+++|...| + ++-..+ -...|+..++.++.++.
T Consensus 4 ~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T PRK07639 4 EALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQ 82 (86)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhh
Confidence 45677888888888776 35788899976 999999999998765 3 554544 47889999999998765
No 445
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=95.82 E-value=0.018 Score=45.11 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcccCcc--eeccCCCccccCC-ChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHh
Q 003331 290 LLQVIRKAFGHALMVE--EVLHHDNFFTMGG-NSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLE 352 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~--~i~~~~~Ff~lGg-dSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~ 352 (829)
+++.++++..+..+.+ .+..++++|+.|+ |||.+++|...| .++...+-. +.|+..++.++.+
T Consensus 3 i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~ 76 (78)
T PRK05087 3 FKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEE 76 (78)
T ss_pred HHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHH
Confidence 5667777777776554 4568899999996 999999998765 355555555 8899999998875
No 446
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.78 E-value=0.46 Score=45.54 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCcEEE-EEec-CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc--
Q 003331 697 LPSQVLICSRNGSIYSFEQESGNLLW-EYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV-- 772 (829)
Q Consensus 697 ~~~~i~~~t~~g~l~~~d~~tG~~~w-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~-- 772 (829)
....+.+|+.+|.+-.||.++....- .+.. ...+...-+.. .....+++++.||.|+.||.++..
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp-----------k~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP-----------KNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC-----------CCchheeEecCCCcEEEEcCCCceEE
Confidence 45678899999999999988763210 0111 11111111111 126789999999999999988422
Q ss_pred -----ccccccccccccee-eeeec-cCCc--ccccceEECCEEEEeeeCCeEEEEe
Q 003331 773 -----TGKENQSKDHMVQE-FAKLE-LQGD--IFSSPVMIGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 773 -----~~~~~~~~~~~~~~-~~~~~-~~~~--~~~s~~~~~~~l~vg~~~g~l~~~d 820 (829)
....-|...+..+. +.... ++.. -+++.-+.+..|.-|+.-+-+|.++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 12222332222221 21111 1221 2334555678899998888888775
No 447
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.77 E-value=0.017 Score=45.81 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+..++++..+.|+.+ .+..++.|. ++|.|||.+++|...| .++...+...+|+..++.++.+.
T Consensus 5 ~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~ 78 (80)
T COG0236 5 AIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEEL 78 (80)
T ss_pred HHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHh
Confidence 46777888888888774 466778887 5999999999998765 47888899999999999998764
No 448
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=95.75 E-value=0.36 Score=47.09 Aligned_cols=107 Identities=9% Similarity=0.188 Sum_probs=63.6
Q ss_pred eeeecCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC-CCcEEEEE
Q 003331 651 CITSANRHVICCLVDGHVVALD-SSGSI----IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLLWEY 724 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~-tG~~~w~~ 724 (829)
.+...+..++++..+|.+...+ ....+ .|+.. ..+.....+. ....+.+|.|+.|+.+.+||.+ .++++|.-
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeeeeeecc-cCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 3444556677777777777555 32222 13211 1112222211 1124679999999999999988 56788862
Q ss_pred -e-cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 725 -S-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 725 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+ ...++.+..... .....|++|+.|-.|..||.++
T Consensus 206 ~kvH~~GV~SI~ss~-----------~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSP-----------PKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ceeeecceEEEecCC-----------CCCceEEEeccccceeeeehhc
Confidence 2 233333222111 2367899999999999999873
No 449
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.59 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.249 Sum_probs=71.2
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEEeec
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVYKLP 597 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~ 597 (829)
.++...++++.+|+.-|.||.|+..+|+.+.... ....+.+...+.+.+.++.+|+..|.|..+-...+. ......
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 3455556789999999999999977776654322 123344445556566777778877776665444322 222222
Q ss_pred c---CCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 598 C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 598 ~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
. ++........+.++..+|.|...|.|.+..++.
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 233455566777788999999999988877664
No 450
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.15 Score=52.07 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=91.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEE-cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec-c
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLD-YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP-C 598 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d-~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~-~ 598 (829)
..++..+|..+.+|..||.+..|+ +..-.++-...++.++..- .+.+++..|..-+.+ ....|+..+|..+-... .
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccc-eeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 456667778899999999999999 4444444444555665543 455555555544445 78999999995433222 2
Q ss_pred CC-cccccceeec--CCCEEEEEec---CCeEEEEEccCCCce--EEEeecc-CCcceeeeeeeecCCEEEEEeeCCeEE
Q 003331 599 GG-SIFGSPAIDE--VHDVLYVAST---SGRLTAISVKALPFH--TLWLHEL-EVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 599 ~~-~~~~~~~~~~--~~~~l~v~t~---~g~l~~~~~~~~~g~--~~w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
+. ..+..+-+.. ....+++++. .+.+..++.....+. ..|.... ..+..++..++.+++.+.+|+.+|.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22 2333333322 1235665543 234554443321110 0111111 123457888888999999999999999
Q ss_pred EEc-CCCCEEE
Q 003331 670 ALD-SSGSIIW 679 (829)
Q Consensus 670 ~~d-~~g~~~w 679 (829)
+++ .+-+.+.
T Consensus 307 i~~~~~lq~~~ 317 (398)
T KOG0771|consen 307 IYDAKSLQRLQ 317 (398)
T ss_pred EEEeceeeeeE
Confidence 998 5544443
No 451
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.60 E-value=3 Score=42.17 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=75.4
Q ss_pred EEEEeccCC-eEEEEEcCCCeEEEeeccC--CcccccceeecCCCEEEEEe-----cCCeEEEEEccCCCceEEEeeccC
Q 003331 572 LIWCGSHDH-NLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVAS-----TSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 572 ~i~~gs~~g-~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t-----~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.+.++-.-| .++.||..+|+....+... -..+..-+++.++..+|+.- ..|.|-+||... +...+-.+...
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~ 97 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSH 97 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCC
Confidence 344443322 4778898888877555443 23455667777677777643 247788898872 14444444332
Q ss_pred CcceeeeeeeecCCEEEEEe------------------eCCeEEEEc-CCCCEEEEeec--CCceeecCcccccCCCeEE
Q 003331 644 VPAFASLCITSANRHVICCL------------------VDGHVVALD-SSGSIIWRCRT--GGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~------------------~~g~i~~~d-~~g~~~w~~~~--~~~~~~~~~~~~~~~~~i~ 702 (829)
.-......+.+++..++++. .+..+..+| .+|+++-+... .-...|.--+....+|.++
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~ 177 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVA 177 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEE
Confidence 21112233444555666653 344577888 88988755443 2222333323345578888
Q ss_pred EEee
Q 003331 703 ICSR 706 (829)
Q Consensus 703 ~~t~ 706 (829)
++..
T Consensus 178 ~a~Q 181 (305)
T PF07433_consen 178 FAMQ 181 (305)
T ss_pred EEEe
Confidence 8864
No 452
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.58 E-value=0.1 Score=55.83 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~ 563 (829)
.++.++.+++ |.++.+|..|++.+.+...+...+.++..+.||..+.+.|.|..|..||+.. ++.+...+.++.++.+
T Consensus 140 aDgil~s~a~-g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 140 ADGILASGAH-GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred cCceEEeccC-ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 5777888776 5699999999999988777777777889999999999999999999999864 6666666666555433
Q ss_pred eee-ecCCCEEEEeccC----CeEEEEEcCC-CeEEEeeccCCc-ccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003331 564 PVV-DAPRQLIWCGSHD----HNLYALDFRN-YRCVYKLPCGGS-IFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 564 ~~~-~~~~~~i~~gs~~----g~l~~~d~~t-g~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
-++ ...-..|+..+.+ ..+.+||... |..+.+...... -.-.|.++.+.+.++.+. .+..++++...+
T Consensus 219 Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 219 RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred eeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 222 1111122221111 2466666432 233333332221 123456677666666544 356788877443
No 453
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.54 E-value=1.2 Score=45.01 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred ccccccceEEeeCCCeEEEEecCCCcEEEEECC------CCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 472 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAK------RSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 472 ~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~------tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+||.|- -++..+..|..|..|-.+..|+.. +-|++-....+. ..+.+..+......+|.|..++.|...|
T Consensus 57 GCiNAl---qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 57 GCINAL---QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccee---eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 466532 233456677778887777888764 233333222222 2234556666667899999999999999
Q ss_pred cCCCcEEEEEecCC---eeeeeeeeecCCCEEEEeccCCeEEEEEcCCC----eEEEeeccCCcccccceeecCCCEEEE
Q 003331 545 YLTGDIYWTFQTCG---EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----RCVYKLPCGGSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 545 ~~tG~~~w~~~~~~---~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg----~~~w~~~~~~~~~~~~~~~~~~~~l~v 617 (829)
.++.+.+..+.... .++. .-..+.++++.+.+.++.+..||.... .+......+....+...-......|.+
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~-m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYH-MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccceeeeeecccCcccceee-cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998887665433 3332 223344677888888999999997653 233222222222222221112245666
Q ss_pred EecCCeEEEEEccC
Q 003331 618 ASTSGRLTAISVKA 631 (829)
Q Consensus 618 ~t~~g~l~~~~~~~ 631 (829)
.+..+++-.||...
T Consensus 213 ~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NSETGGPNVFDRRM 226 (609)
T ss_pred ccccCCCCceeecc
Confidence 67677777787653
No 454
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.49 E-value=3.9 Score=42.82 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=108.5
Q ss_pred EEEEEEcCCCcEEEEEecCC--eeeeeeee--ec----CCCEEEEecc---------C-CeEEEEEcCCC-----e--EE
Q 003331 539 KIYFLDYLTGDIYWTFQTCG--EVKCQPVV--DA----PRQLIWCGSH---------D-HNLYALDFRNY-----R--CV 593 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~--~~~~~~~~--~~----~~~~i~~gs~---------~-g~l~~~d~~tg-----~--~~ 593 (829)
.|..+|..+.+.+-++.... .+.+...+ .. ....+.+|+. . |.++.|+..+. + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46777777777776655432 22221111 11 1455666642 2 88999998874 2 22
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
......+.+.+-..+ ++.++++. ++.++.++..... +..-......+. ....+...++.+++|....++..+.
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPF-YITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEETTS-SEEEEEEE-BSS-SEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccCcc-cchhhheecceE-EEEEEeccccEEEEEEcccCEEEEEE
Confidence 334444554443333 36766655 5779999988732 122222222222 2333444577999999888887764
Q ss_pred -CCCC-EEEEeecCCc--eeecCcccccCCCeEEEEeeCCeEEEEeCCC-------C--cEE--EEEecCCccccccccc
Q 003331 673 -SSGS-IIWRCRTGGP--IFAGPCTSFALPSQVLICSRNGSIYSFEQES-------G--NLL--WEYSVGDPITASAYID 737 (829)
Q Consensus 673 -~~g~-~~w~~~~~~~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t-------G--~~~--w~~~~~~~~~~~~~~~ 737 (829)
..+. +........+ +.+..++. + ++.+.++..+|.++.+.... + ++. -.+..+..+....-..
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d-~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLV-D-EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--S-SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccCCEEEEEEecCCCccEEEEEEec-C-CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 3333 3322222222 22222221 2 24788888889887776431 2 233 3444554443320000
Q ss_pred cccccc-cccccCCCcEEEEEccCCcEEEEEe
Q 003331 738 EHLQLK-LESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 738 ~~~~~~-~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+... ..+.......++.++.+|+|..+-+
T Consensus 235 --l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 235 --LIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred --eeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 0000 0000001345888889999996654
No 455
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.47 E-value=0.84 Score=43.60 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=85.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEE--EEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVV--GCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~v--g~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
..+.-|.|.. .|+.++..+... -...+.. ........++++..+.+ |..++.+..||.+ ++.+..+.. ...
T Consensus 30 ~~~ks~~~~~--~l~~~~~~~~~~-~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~ 103 (194)
T PF08662_consen 30 KSGKSYYGEF--ELFYLNEKNIPV-ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPR 103 (194)
T ss_pred cCcceEEeeE--EEEEEecCCCcc-ceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCc
Confidence 3444555442 477777654432 2333322 22456778888877544 4456789999975 777766643 222
Q ss_pred eeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 562 CQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
....+++.+..+.+++. .|.+..||..+.+.+-+..... ......++++..+..++... ....++ |-.+|
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~t~~~WsPdGr~~~ta~t~~---r~~~dn--g~~Iw 176 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--ATDVEWSPDGRYLATATTSP---RLRVDN--GFKIW 176 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--EEEEEEcCCCCEEEEEEecc---ceeccc--cEEEE
Confidence 34456777788887654 3679999999888876665432 34556777677777665431 223333 55555
Q ss_pred ee
Q 003331 639 LH 640 (829)
Q Consensus 639 ~~ 640 (829)
.+
T Consensus 177 ~~ 178 (194)
T PF08662_consen 177 SF 178 (194)
T ss_pred Ee
Confidence 54
No 456
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=95.46 E-value=0.2 Score=56.25 Aligned_cols=43 Identities=19% Similarity=0.446 Sum_probs=38.4
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003331 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
|+.||.+++.. --.|.|+||.+.++.+.|+++.-.+++.++..
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 89999999842 34699999999999999999999999998876
No 457
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=95.43 E-value=0.093 Score=55.28 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=63.6
Q ss_pred CccEEEEec------CCCC-HhHHHHHHHhCCC---ceEEeecCccccccccccccccCCCcccccCCCCccccccccCC
Q 003331 19 SLKLLVLSG------EVLP-LSMWDIISKLFPN---ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 88 (829)
Q Consensus 19 ~lr~i~~gG------e~l~-~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 88 (829)
..+++-.|| |.++ .++.+.+.+.|.- ..+++.||+||..... +.+... -.+.|.
T Consensus 222 ~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~--~~~~~~--------------~~~~p~ 285 (365)
T PF04443_consen 222 GSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQA--YECGHG--------------HFHVPP 285 (365)
T ss_pred CCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhh--eeCCCC--------------cccCCC
Confidence 455555554 4575 4566667776722 4799999999965322 222110 012223
Q ss_pred cEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC----
Q 003331 89 CDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS---- 160 (829)
Q Consensus 89 ~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~---- 160 (829)
. +.+.|++. +.|..|-|.+-.+... . ..+..-|.|+|.+..+
T Consensus 286 w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s----------------------------~p~~IlTeDlGvl~~~~~c~ 335 (365)
T PF04443_consen 286 W-VIIRDPETLEPLPPGETGLIQVIDLANT-S----------------------------YPGFILTEDLGVLHGDDDCG 335 (365)
T ss_pred e-EEEECCCCCcCCCCCCeeEEEEEccccc-C----------------------------CCcEEEEcceeeecCCCCCC
Confidence 3 66677765 2344455555332110 0 1233679999987543
Q ss_pred ----CcEEEEeecCCcEEECCee
Q 003331 161 ----GDLVFLGRKDRTIKINGQR 179 (829)
Q Consensus 161 ----G~l~~~GR~dd~ik~~G~~ 179 (829)
.++.++||.+.- .++|-.
T Consensus 336 cr~g~~f~vlGR~~~a-e~RGCs 357 (365)
T PF04443_consen 336 CRKGKYFEVLGRADGA-EIRGCS 357 (365)
T ss_pred CccCCEEEEEeCCCCC-ccCCcH
Confidence 279999998742 344443
No 458
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.42 E-value=3.7 Score=41.99 Aligned_cols=260 Identities=13% Similarity=0.149 Sum_probs=107.9
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CCe--e-eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGE--V-KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~~--~-~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
.+.+.++ +.-|+....+.| +...+|-.-|+... ... . .....+.+ +..|+.+..+.|+. ..+|-.-|
T Consensus 21 dV~F~d~-~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~ll~--T~DgG~tW 93 (302)
T PF14870_consen 21 DVAFVDP-NHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLLLH--TTDGGKTW 93 (302)
T ss_dssp EEEESSS-S-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEEEE--ESSTTSS-
T ss_pred EEEEecC-CEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceEEE--ecCCCCCc
Confidence 3445433 444444445644 33456666676432 111 1 11222232 34555544553322 23344455
Q ss_pred eec-c----CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc--eeeeeeeecCCEEEEEeeCCe
Q 003331 595 KLP-C----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA--FASLCITSANRHVICCLVDGH 667 (829)
Q Consensus 595 ~~~-~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~l~~~~~~g~ 667 (829)
..- . .+..+....+. ++.+++.+..|.||. ..+ |-.-|+....... +...... .++.+++.+..|.
T Consensus 94 ~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~--T~D--gG~tW~~~~~~~~gs~~~~~r~-~dG~~vavs~~G~ 166 (302)
T PF14870_consen 94 ERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYR--TTD--GGKTWQAVVSETSGSINDITRS-SDGRYVAVSSRGN 166 (302)
T ss_dssp EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEE--ESS--TTSSEEEEE-S----EEEEEE--TTS-EEEEETTSS
T ss_pred EEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEE--eCC--CCCCeeEcccCCcceeEeEEEC-CCCcEEEEECccc
Confidence 432 1 22222222233 356777777776654 223 5556776443221 2222233 4445554555677
Q ss_pred EEEEcCCCCEEEEee---cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccc
Q 003331 668 VVALDSSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLK 743 (829)
Q Consensus 668 i~~~d~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~ 743 (829)
++.--..|...|+.. ....+.+.. ...++.+|+.+..|.|+.-+.......|....... ....-+.+ +.
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~g---f~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld----~a 239 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMG---FSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD----LA 239 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEE---E-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEE----EE
T ss_pred EEEEecCCCccceEEccCccceehhce---ecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEE----EE
Confidence 765434455455432 222333322 34578999999888777776344445676532111 00000010 00
Q ss_pred cccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc----CCcccccceEECCEEEEeeeCCeEEEE
Q 003331 744 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL----QGDIFSSPVMIGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~l~vg~~~g~l~~~ 819 (829)
...++.+|++..+|.|++= .+.| +.|.+... +++....-...+++-|+-..+|.|..|
T Consensus 240 ----~~~~~~~wa~gg~G~l~~S-~DgG-------------ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 ----YRPPNEIWAVGGSGTLLVS-TDGG-------------KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ----ESSSS-EEEEESTT-EEEE-SSTT-------------SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ----ecCCCCEEEEeCCccEEEe-CCCC-------------ccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 1126788888888877643 2222 33433322 332222222346788888889988776
No 459
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.39 E-value=0.27 Score=56.45 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=84.5
Q ss_pred CCCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCce-eeceEEee-----CCcEEEEEEeCCEEEEEEcCC-C-cEEEE
Q 003331 484 DSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRI-ECSAAVLA-----DFSQVVVGCYKGKIYFLDYLT-G-DIYWT 553 (829)
Q Consensus 484 d~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~-~~~~~~~~-----~~~~v~vg~~dg~l~~~d~~t-G-~~~w~ 553 (829)
+.+..+++-+ +...||.+|+.+|+++-+++.+..+ ....+... .....++|-.++.|++||+.- | +++|.
T Consensus 490 ~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 490 DQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 3444444443 4578999999999997555554432 11222111 124688999899999999874 3 45553
Q ss_pred ----EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 554 ----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 554 ----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
|...... +.+....+|.|.+|+.+|.|+.||. .|+. .-.+..-+..+..+.+.. +|..+++|.+..|..++
T Consensus 570 ~~k~Y~~~~~F--s~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 570 QSKQYSSKNNF--SCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATCKTYLLLID 645 (794)
T ss_pred cccccccCCCc--eEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEeecceEEEEE
Confidence 2222222 2334456799999999999999994 4432 111221133333444444 35555566667787777
Q ss_pred cc
Q 003331 629 VK 630 (829)
Q Consensus 629 ~~ 630 (829)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
No 460
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=2 Score=42.45 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee------ecCCCEEEEeccCCeEEEEEc-
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV------DAPRQLIWCGSHDHNLYALDF- 587 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~------~~~~~~i~~gs~~g~l~~~d~- 587 (829)
+........+...|.++..++.|+++..||.++..-.|.....-......++ ..-+..|.+.++|+++..|..
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Q ss_pred ----CCCeEEEeeccC--------CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-------cee
Q 003331 588 ----RNYRCVYKLPCG--------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-------AFA 648 (829)
Q Consensus 588 ----~tg~~~w~~~~~--------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-------~~~ 648 (829)
+.....|...+. -.+-..|...+ =.+...+.+|.|.+|+.-+----..|.....-. .+.
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG--LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG--LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcc--eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Q ss_pred eeeeeec-------CCEEEEEeeC-----CeEEEEc-CCCCEEEEeecCCceeecCc-------ccccCCCeEEEEeeCC
Q 003331 649 SLCITSA-------NRHVICCLVD-----GHVVALD-SSGSIIWRCRTGGPIFAGPC-------TSFALPSQVLICSRNG 708 (829)
Q Consensus 649 s~~~~~~-------~~~l~~~~~~-----g~i~~~d-~~g~~~w~~~~~~~~~~~~~-------~~~~~~~~i~~~t~~g 708 (829)
.++.+.. ...+.+|+.+ +.++.|. ..+...|..-..-+-...|+ .....-..|-+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Q ss_pred eEEEEeCCCCc------------------------------EEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 709 SIYSFEQESGN------------------------------LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 709 ~l~~~d~~tG~------------------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
|+.|+.+.-. .+|.....-. +..+...+
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------------------GtiLsStG 307 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------------------GTILSSTG 307 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------------------eeEEeecC
Q ss_pred cCCcEEEEEee
Q 003331 759 SSGSIHILRVN 769 (829)
Q Consensus 759 ~~G~l~~~d~~ 769 (829)
.||.|..|...
T Consensus 308 dDG~VRLWkan 318 (361)
T KOG2445|consen 308 DDGCVRLWKAN 318 (361)
T ss_pred CCceeeehhhh
No 461
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=95.32 E-value=0.078 Score=59.41 Aligned_cols=188 Identities=15% Similarity=0.239 Sum_probs=106.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEE--EEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW--TFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w--~~~~~~~~~~ 562 (829)
+...+++.+-| .+.+.+..+|.+.|...-.- +..++.-... -...-+-.+|.+|.+-- +.-+. .+.....+..
T Consensus 26 ~e~~~~~stid-~l~a~s~~~g~~~~~l~~~p-vv~~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~ 100 (903)
T KOG1027|consen 26 DENLLLVSTID-SLHAPSSETGFIKWTLSDDP-VVASPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNA 100 (903)
T ss_pred ccccccccccc-cccCccccccceeeeeccCc-cccCCccccc-cccCCCccccceeeccC--CCccccCCccchhhhcc
Confidence 34567777777 78888889999999754321 1111111000 00112233566665532 22222 2333334444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+|+.. .+|.+|.|+..+..|.+|++||+..|++....++ ...+|.+-.+.++..+|.++ -...|....
T Consensus 101 ~pcrs-sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~--~~~~wn~t~ 168 (903)
T KOG1027|consen 101 SPCRS-SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNV--RGKTWNTTF 168 (903)
T ss_pred CcccC-CCCeEEecccccceEEecCCccceeEEEecCCcc---------hhheecccceeEEecccCcc--cCceeeccc
Confidence 55544 5799999999999999999999999999776522 24566665566666666554 344565544
Q ss_pred CCcceeeeeeeecCCEE-EEEeeCCeEEEEc-CCCCEEEEeecCCceee
Q 003331 643 EVPAFASLCITSANRHV-ICCLVDGHVVALD-SSGSIIWRCRTGGPIFA 689 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l-~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~ 689 (829)
.......+.......+. +..+.+|.+.-+| ..|+.+|......+++.
T Consensus 169 ~dy~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv~ 217 (903)
T KOG1027|consen 169 GDYSAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVVA 217 (903)
T ss_pred cchhccCCCccCCceeEEEeecCCccEEeccCcccceeeccccCCceEE
Confidence 32221111111111121 2222367777788 89999998776655443
No 462
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.27 E-value=0.33 Score=49.46 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=89.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc---EEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---CcEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSS---VLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT---GDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~---~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t---G~~~w~~ 554 (829)
.++++..|++++.+...+.++..... ..|. +..+.+. .+..+..+...+.++..-|.+|.+|..+ |..+-..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 45667788888877765445433222 2232 2222222 2333444445666666566666666433 3332211
Q ss_pred ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+-.+....++.+++..|.++..|..|++.....-..+-.+-. +....+.+.+.+ +..|+.++.|++|+.||..+
T Consensus 149 -GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~s-- 224 (390)
T KOG3914|consen 149 -GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITS-- 224 (390)
T ss_pred -hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEeccc--
Confidence 1223444556667778888888888887765443333333333 233455566654 45678899999999999998
Q ss_pred ceEEEeec
Q 003331 634 FHTLWLHE 641 (829)
Q Consensus 634 g~~~w~~~ 641 (829)
|+.+....
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 88775544
No 463
>PTZ00171 acyl carrier protein; Provisional
Probab=95.25 E-value=0.035 Score=49.49 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+.+.+++++.+++ +.+.++.+|. ++|.|||..++|...| .++..++-...|+..++.++.++.
T Consensus 68 ~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 68 KEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred HHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 456788888999888876 4688899986 9999999999998765 367778899999999999998754
No 464
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.23 E-value=5.6 Score=43.10 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=101.2
Q ss_pred cccceEEeeCCCeEEEEecCCC-cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003331 475 DASPLVVLKDSDIYLFVGSHSH-KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 475 ~~sp~v~~~d~~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
.+.|+.+..+....+-.++... .|..|+. +|+++++............+..+. .+++-..||.++.+|.. |+. +
T Consensus 39 ~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~ 113 (410)
T PF04841_consen 39 YGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--Q 113 (410)
T ss_pred CCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--e
Confidence 3345555555444444444433 4888885 599998876665444466776654 45555679999999965 666 5
Q ss_pred EecCCeeeeeee--------eecCCCEEEEeccCCeEEEEEcCCCeEEEeec--cCCc---------ccccceeecCCCE
Q 003331 554 FQTCGEVKCQPV--------VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP--CGGS---------IFGSPAIDEVHDV 614 (829)
Q Consensus 554 ~~~~~~~~~~~~--------~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~--~~~~---------~~~~~~~~~~~~~ 614 (829)
+..+..+....+ .....|.+. -+.++.++.++--+....++.. .... ....+.++.+...
T Consensus 114 fsl~~~i~~~~v~e~~i~~~~~~~~Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~ 192 (410)
T PF04841_consen 114 FSLGEEIEEEKVLECRIFAIWFYKNGIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVV 192 (410)
T ss_pred echhhhccccCcccccccccccCCCCEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcce
Confidence 544433321111 111245443 3456677777544333232211 1110 0001122322233
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+....++.++.++... .+. ... ...+..++++++++.+.+-+.+|.+.+++ .-.+..-++.++
T Consensus 193 ~i~~~~g~~i~~i~~~~--~~~---i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 193 EILLANGETIYIIDENS--FKQ---IDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EEEEecCCEEEEEEccc--ccc---ccC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 33333445555555332 111 111 12345667777888888888888887777 333444444443
No 465
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=1.1 Score=50.28 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=103.5
Q ss_pred CcEEEEEecCCeeee-eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEEecCCeE
Q 003331 548 GDIYWTFQTCGEVKC-QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 548 G~~~w~~~~~~~~~~-~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~t~~g~l 624 (829)
|+.-|+...-+..+. ...+.....++++.+..|.+..++.+||++.|+.-....... .+. ..++......+
T Consensus 24 gkfdwr~~~vG~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~------~~~iS~dg~~l 97 (910)
T KOG2103|consen 24 GKFDWRQQLVGVKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPL------TNTISVDGRYL 97 (910)
T ss_pred hhcchhhhcccceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcce------eEEEccCCcEE
Confidence 566666554443222 223444677899999999999999999999999866543221 111 11344444568
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCCCeEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVL 702 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~ 702 (829)
+.||.++ |...|....... +....+....+..++. | .. ..|++.|.-.......-.. .......+.+|
T Consensus 98 r~wn~~~--g~l~~~i~l~~g-~~~~~~~v~~~i~v~~---g----~~~~~g~l~w~~~~~~~~~~~~q~~~~~~t~vvy 167 (910)
T KOG2103|consen 98 RSWNTNN--GILDWEIELADG-FKGLLLEVNKGIAVLN---G----HTRKFGELKWVESFSISIEEDLQDAKIYGTDVVY 167 (910)
T ss_pred EeecCCC--ceeeeecccccc-cceeEEEEccceEEEc---c----eeccccceeehhhccccchhHHHHhhhccCcEEE
Confidence 8999888 999999877654 3222222222222221 1 33 5788888755432211000 00011123344
Q ss_pred EE----eeCCeEEEEeCCCCcEE-EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 703 IC----SRNGSIYSFEQESGNLL-WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~----t~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.- .....|+.++.++|... |+.....+-..... |....+.+++ +.+|++..+|....
T Consensus 168 ~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~-----------c~~~k~~vl~-~s~g~l~s~di~~~ 229 (910)
T KOG2103|consen 168 VLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLS-----------CSTDKEVVLV-CSNGTLISLDISSQ 229 (910)
T ss_pred EEEEEecCCceEEEEEccCCcEecceeeeecCcccccc-----------cccccceEEE-cCCCCeEEEEEEee
Confidence 32 12345777777777765 54433222211110 1112344444 45667777776643
No 466
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.18 E-value=0.59 Score=52.80 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++..|..+..+..+|..+++..........- ..++-.++..+++|...|+|..-|+++-+.+.++..+....+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence 3456777888888999999999887766665432 2233345578999999999999999999999999887665443
Q ss_pred eeecCCCEEEEeccCCe---------EEEEEcCCCeEEEeeccCC-c--ccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 565 VVDAPRQLIWCGSHDHN---------LYALDFRNYRCVYKLPCGG-S--IFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~---------l~~~d~~tg~~~w~~~~~~-~--~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
++-.++.+.+.+.... |..||...-+.+--+.... + ..-.|.+ -.++.|.+..|.....|..+.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl---~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL---TTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc---cceEEEEecccceeecccccc
Confidence 3334566666554433 3444544433222111111 0 1112222 256778888888888774321
Q ss_pred Cc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 633 PF--HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 633 ~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+. .-........+...+..+++.++.+.+|..+|.|..|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 11122223333346677888889999999999999887
No 467
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=95.13 E-value=0.13 Score=49.14 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=79.9
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCe------eeeeeee----ecCCCEEEEeccCCeEEEE--EcCCCeEEEee-
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------VKCQPVV----DAPRQLIWCGSHDHNLYAL--DFRNYRCVYKL- 596 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------~~~~~~~----~~~~~~i~~gs~~g~l~~~--d~~tg~~~w~~- 596 (829)
.+.+|-.+|.+..||..+|..+-.+..... ....|+. +.....=..|+.+..+..| +-.+|.+.-..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 356777789999999999855433221111 1111111 1111111223333344444 44445443221
Q ss_pred -ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 597 -PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.....-.+...+-.+++.+..+.+||.+.+|+-++ +.++-..+.+.....+.++.++-+.+..++.|+.|..|+
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 12222334445555567778889999999999887 777665555555556667777767778888888776653
No 468
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=95.07 E-value=0.043 Score=43.58 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
++..++++++++.+++ +.+.++.+| -++|.|||..+.|...| .++...+.+..|+..+..++.++.
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~ 78 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSL 78 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHH
Confidence 4667888888888877 568899999 57999999999998765 477788999999999999998754
No 469
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.98 E-value=0.33 Score=49.44 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=82.5
Q ss_pred ecCCCEEEEeccCCeEEEEEc--CCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc-
Q 003331 567 DAPRQLIWCGSHDHNLYALDF--RNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL- 642 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~--~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~- 642 (829)
.++...+++++.+...+.++. ... ...|...+.........+..++..+.++-..|.+|.++..... . |....
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--~-~~~~~~ 147 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--S-GRCEPI 147 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc--c-cCcchh
Confidence 344555666655555433332 221 2223222222222233333334666666666777777655311 0 22111
Q ss_pred --CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 643 --EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 --~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+........+++++..|..+..|+.|.+.. ..-..+-.+-.+.. ..+.++ ...+..++.++.|++|+.||..+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCceeeecCCCCcEEEEecccC
Confidence 112234556777788888888888777665 32222222222222 222222 223556899999999999999999
Q ss_pred cEEEEEecC
Q 003331 719 NLLWEYSVG 727 (829)
Q Consensus 719 ~~~w~~~~~ 727 (829)
+.+..++..
T Consensus 226 k~L~t~dl~ 234 (390)
T KOG3914|consen 226 KLLDTCDLS 234 (390)
T ss_pred Ccccccchh
Confidence 988665543
No 470
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.97 E-value=7.8 Score=43.32 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=123.4
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCC----------------ce----eeceEEeeCCcEEEEE-EeCCEEEE
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEG----------------RI----ECSAAVLADFSQVVVG-CYKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~----------------~~----~~~~~~~~~~~~v~vg-~~dg~l~~ 542 (829)
++.++|+-.. +.++..+++++=+..--...+. .+ +..+-+.++|..++.. .+.+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 4567888774 5677777776533222122111 00 1112233455555433 34567889
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 543 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
+|.++-++.|+...++... ...+..+++.+|+.+++ ..+..++..+...+..+..... .....+++..+++
T Consensus 220 ID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~i----ea~vkdGK~~~V~ 294 (635)
T PRK02888 220 VDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARI----EEAVKAGKFKTIG 294 (635)
T ss_pred EECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHH----HHhhhCCCEEEEC
Confidence 9999999999988876432 22445577888888643 3455666554443333332210 1122345677773
Q ss_pred ecCCeEEEEEccCC--Cc-eEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCE------------EEEe
Q 003331 619 STSGRLTAISVKAL--PF-HTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSI------------IWRC 681 (829)
Q Consensus 619 t~~g~l~~~~~~~~--~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~------------~w~~ 681 (829)
++.|.++|..++ .+ +.+-.+..+. ......+++++.++++++. +..+.++| .+.+. .-+.
T Consensus 295 --gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 --GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred --CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 457889996641 01 2333333322 2245677889999998865 67889999 55442 2222
Q ss_pred ecCCceeecCcccccCCCeEEEE-eeCCeEEEEeCCC
Q 003331 682 RTGGPIFAGPCTSFALPSQVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~t 717 (829)
..+...+. ..++.+|..|+. ..|..|..||..+
T Consensus 372 evGlGPLH---TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGPLH---TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCcce---EEECCCCCEEEeEeecceeEEEehHH
Confidence 22221111 124556677765 3477899998765
No 471
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.94 E-value=2 Score=48.65 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=98.7
Q ss_pred CeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEE-EecC------CeEEEEEccCCCceEEEeeccCCcc-eeee
Q 003331 580 HNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYV-ASTS------GRLTAISVKALPFHTLWLHELEVPA-FASL 650 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v-~t~~------g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~ 650 (829)
..+.+||+.+++-.+....... .....++.+ +.||+ |+.+ ..+..||+.+ .+ |..-..... ....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~--~~--W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRT--NQ--WTPVAPMNTKRSDF 374 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCC--Cc--eeccCCccCccccc
Confidence 3577888888732222222211 122233333 56665 4444 2477888886 33 865322111 1222
Q ss_pred eeeecCCEEE-EEeeCC-----eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee-C------CeEEEEeCC
Q 003331 651 CITSANRHVI-CCLVDG-----HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-N------GSIYSFEQE 716 (829)
Q Consensus 651 ~~~~~~~~l~-~~~~~g-----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~------g~l~~~d~~ 716 (829)
.+..-++.+| +|+.+| .+-+|| .+. .|..-.+-......+-....++.||+... + ..+.+||+.
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 2222344444 454443 366777 332 36654322111111111223677876532 2 358899988
Q ss_pred CCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC-----cEEEEEeecCccccccccccccceeeeeec
Q 003331 717 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG-----SIHILRVNLDVTGKENQSKDHMVQEFAKLE 791 (829)
Q Consensus 717 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-----~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 791 (829)
+++ |+...+-......... ...++..+++|+.+| .+.+||+.+. .|....
T Consensus 453 t~~--W~~~~~M~~~R~~~g~---------a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--------------~W~~v~ 507 (571)
T KOG4441|consen 453 TNT--WTLIAPMNTRRSGFGV---------AVLNGKIYVVGGFDGTSALSSVERYDPETN--------------QWTMVA 507 (571)
T ss_pred CCc--eeecCCcccccccceE---------EEECCEEEEECCccCCCccceEEEEcCCCC--------------ceeEcc
Confidence 764 5443221110000000 001133444455554 2566766633 222221
Q ss_pred -cCC-cccccceEECCEEEEe-ee-----CCeEEEEeccccccc
Q 003331 792 -LQG-DIFSSPVMIGGRVFVG-CR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 792 -~~~-~~~~s~~~~~~~l~vg-~~-----~g~l~~~d~~tg~~~ 827 (829)
+.. ......+..++.+|+. .. -+.+-+||+.+.+.+
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 111 1112335578888774 22 357888898887654
No 472
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.88 E-value=3.1 Score=45.06 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecC
Q 003331 580 HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSAN 656 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 656 (829)
..++.+|..+|+..-.....+ ....|.+.+++..|.+. ..+| .||.+|..+ +.+++..........+.+.+++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~---~~~~~Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG---KNLPRLTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCC---CcceecccCCccccCccCCCCC
Confidence 358999999887655544333 33456666666766554 4444 478888875 3355544333334567788889
Q ss_pred CEEEEEeeCC---eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEee-CCe--EEEEeCCCCcEEEEE
Q 003331 657 RHVICCLVDG---HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGS--IYSFEQESGNLLWEY 724 (829)
Q Consensus 657 ~~l~~~~~~g---~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~--l~~~d~~tG~~~w~~ 724 (829)
..+++.+..+ .|+.+|.+|...-++.....-.+.|.+..+. ..+.+.+. +|. |...|..++.. |..
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~-~~~ 365 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK-IRI 365 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc-EEE
Confidence 9888887644 4788884444333333333222344333322 23333332 343 77777766665 443
No 473
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.74 E-value=1.2 Score=37.32 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=63.4
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
+.|++||.|..|..|+ ..++++.+...+.+..-..+ ..+.+..+..+|+|-.|+. .+.+|+.+....+.+...+
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSL--GGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEc--CCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEE
Confidence 4799999999999997 45788888766665543333 3477888889999999985 4678998876665555555
Q ss_pred ecCCC---EEEEEecCCeE
Q 003331 609 DEVHD---VLYVASTSGRL 624 (829)
Q Consensus 609 ~~~~~---~l~v~t~~g~l 624 (829)
+-+++ -|.+|-.+|.+
T Consensus 90 D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cCCCCCceEEEEEecCCeE
Confidence 44221 46666666654
No 474
>PHA03098 kelch-like protein; Provisional
Probab=94.73 E-value=1.7 Score=49.38 Aligned_cols=168 Identities=10% Similarity=0.141 Sum_probs=77.1
Q ss_pred EEEEEEcCCCcEEEEEecC--Cee-eeeeeeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeeccC--Cccc-ccc
Q 003331 539 KIYFLDYLTGDIYWTFQTC--GEV-KCQPVVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPCG--GSIF-GSP 606 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~--~~~-~~~~~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~~--~~~~-~~~ 606 (829)
.+++||..+++ |..... ... ..+.+.. ++.||+ |+.+ ..+.+||+.++ .|+.... .... .+.
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCV 385 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceE
Confidence 58899987654 543211 011 1112222 244554 5543 34788888765 4764321 1111 111
Q ss_pred eeecCCCEEEEEec---C----CeEEEEEccCCCceEEEeeccCCcce-eeeeeeecCCEEEEEe-eC--------CeEE
Q 003331 607 AIDEVHDVLYVAST---S----GRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCL-VD--------GHVV 669 (829)
Q Consensus 607 ~~~~~~~~l~v~t~---~----g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~~~~-~~--------g~i~ 669 (829)
+.. ++.+|+.+. + ..+..||+.+ . .|..-...+.. ........++.+|+.+ .+ ..++
T Consensus 386 ~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 386 VNV--NNLIYVIGGISKNDELLKTVECFSLNT--N--KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred EEE--CCEEEEECCcCCCCcccceEEEEeCCC--C--eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 222 367776432 1 3578888876 3 47653322211 1112222345555532 21 2378
Q ss_pred EEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEee------CCeEEEEeCCCCcEEEEE
Q 003331 670 ALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSR------NGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~------~g~l~~~d~~tG~~~w~~ 724 (829)
+|| .++ .|+.-... +...... ...++.||+.+. .+.+.+||+.+. .|..
T Consensus 460 ~yd~~~~--~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 517 (534)
T PHA03098 460 SYNPVTN--KWTELSSLNFPRINASL--CIFNNKIYVVGGDKYEYYINEIEVYDDKTN--TWTL 517 (534)
T ss_pred EecCCCC--ceeeCCCCCcccccceE--EEECCEEEEEcCCcCCcccceeEEEeCCCC--EEEe
Confidence 888 544 35542211 1111111 112556665432 236788887755 3653
No 475
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=2.9 Score=47.30 Aligned_cols=197 Identities=11% Similarity=0.059 Sum_probs=96.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeC-C----EEEEEEcCC---Cc---E
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYK-G----KIYFLDYLT---GD---I 550 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~d-g----~l~~~d~~t---G~---~ 550 (829)
+..++.|++|+.+|.|..+|.. -+.+..+.... ++....-..++...++.-..| + .|..||++. +. +
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3467899999999999999843 33323333221 112122222222344433222 2 356666532 12 2
Q ss_pred E---EEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC----CCeEEEeec-cCCcccccceeecCCCE-EEE
Q 003331 551 Y---WTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR----NYRCVYKLP-CGGSIFGSPAIDEVHDV-LYV 617 (829)
Q Consensus 551 ~---w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~----tg~~~w~~~-~~~~~~~~~~~~~~~~~-l~v 617 (829)
+ ..+. +...+.++..+..+-..|.+|-.+|.|+++.-. -|. +-.+. .++..+....+..++.. +++
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeEEE
Confidence 2 1111 123445556666677889999999999988521 111 11111 12233333444333343 677
Q ss_pred EecCCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 618 ASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
+|.. .|..|.....+ +.-. .+..+-......... ...-++++....++.|+ ..-++-|.+..+.
T Consensus 190 ~Tt~-~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~-~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 190 ATTE-QVMLYSLSGRT--PSLKVLDNNGISLNCSSFSD-GTYQFICAGSEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred Eecc-eeEEEEecCCC--cceeeeccCCccceeeecCC-CCccEEEecCceEEEEcCCCcceeeeecCCC
Confidence 7765 47777766422 1211 222222222222222 22224444567899999 4334557766443
No 476
>PHA03098 kelch-like protein; Provisional
Probab=94.64 E-value=1.7 Score=49.37 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=63.2
Q ss_pred cEEEEECCCCcEEEEEEc--C-CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Cee-eeeee
Q 003331 497 KFICADAKRSSVLWEIKL--E-GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEV-KCQPV 565 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~--~-~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~-~~~~~ 565 (829)
.+++||+.+.+ |..-. + .+.. ..++..++...++|+.+ ..+.+||+.++ .|+.... ... ..+.+
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCVV 386 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCccccc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceEE
Confidence 58899988765 74321 1 1111 22233343334455543 35788997765 4764221 111 11112
Q ss_pred eecCCCEEEE-eccC------CeEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEEec-C--------CeEEE
Q 003331 566 VDAPRQLIWC-GSHD------HNLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVAST-S--------GRLTA 626 (829)
Q Consensus 566 ~~~~~~~i~~-gs~~------g~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~t~-~--------g~l~~ 626 (829)
. -++.||+ |+.+ ..+++||+.++ .|..... .... .+.+.. ++.||+.+. + ..+++
T Consensus 387 ~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 387 N--VNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred E--ECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEE
Confidence 2 2356665 4321 35889998875 4764322 1111 122223 366766432 1 23788
Q ss_pred EEccCCCceEEEee
Q 003331 627 ISVKALPFHTLWLH 640 (829)
Q Consensus 627 ~~~~~~~g~~~w~~ 640 (829)
||+.+ ..|..
T Consensus 461 yd~~~----~~W~~ 470 (534)
T PHA03098 461 YNPVT----NKWTE 470 (534)
T ss_pred ecCCC----Cceee
Confidence 88776 34654
No 477
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=94.59 E-value=0.74 Score=51.40 Aligned_cols=43 Identities=21% Similarity=0.489 Sum_probs=37.6
Q ss_pred EecCceEEEc----cCCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003331 149 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
||.||+++.. ..-.+.|++|.+-+..+.|+|++-.++..++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 8999999973 335799999999999999999999999888765
No 478
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=94.59 E-value=0.27 Score=54.81 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=38.4
Q ss_pred EecCceEEEc----cCCcEEEEeecCCcEEECCeeeChHHHHHHHhCC
Q 003331 149 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192 (829)
Q Consensus 149 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~ 192 (829)
||.||+++.. ..-.+.|++|.+.+..+.|+|++-.++..++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 8999999863 3357999999999999999999999998888763
No 479
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=94.53 E-value=4.8 Score=40.51 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=114.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----cEEEEEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----DIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~~~w~~~~~ 557 (829)
.+..||..+.|-.+..|-..+--..|.-- .+.. ........+-..+++|-.+|.++-+....- .+...+..+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~-~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSP-CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCC-ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 45567878888777776544333456421 1111 112233444457899988888887764321 111222223
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
.......+++.....|+..+.|..+.---.+.|.-+-.+..... -+.+.++- ...|+|-..|.+.........-.++
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i 190 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLI 190 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc-CCCCceee--EEEEecccccceEEEEEeecCCceE
Confidence 33334445554555666666554433222233322211111110 11122222 3667777777766555443224455
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCC--EEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGS--IIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~--~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
-+................++.++.|..+..+..+|--|. ....... ...+...-. ...-..++....||.|.+||
T Consensus 191 ~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~--~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 191 TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY--AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh--hhhheeeeeccCCCeEEEEe
Confidence 555444444455556667788899998999999982221 1122111 111111110 11123577788899999999
Q ss_pred CCCC
Q 003331 715 QESG 718 (829)
Q Consensus 715 ~~tG 718 (829)
-+..
T Consensus 269 mn~~ 272 (404)
T KOG1409|consen 269 MNVK 272 (404)
T ss_pred ccce
Confidence 7654
No 480
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=1.7 Score=44.62 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
..|.+..++.+..|..+|.++...+-.+..+..+++...--++.+.||.|-.+|.|+.||....
T Consensus 205 ~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 205 NEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4567888899999999999998888888777666654443444678999999999999998753
No 481
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.37 E-value=2.5 Score=42.69 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=66.0
Q ss_pred eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 562 CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+.....++..+..++. +..+..||+.+|..+--...+..-++..-.+++++.++.++.|+....|+.+..--+..|..
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 34445555555555554 45799999999876544333444445556777889999999999888886443112334443
Q ss_pred ccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc
Q 003331 641 ELEVPAFASLCITSANRHVICCL-VDGHVVALD 672 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d 672 (829)
..+ ...+.+.++.+..+.+.. ....+|.+.
T Consensus 279 gsg--rvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 279 GSG--RVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred cCC--ceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 222 334556666676665544 344556554
No 482
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=94.33 E-value=0.24 Score=55.74 Aligned_cols=185 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--eccCCccccc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGGSIFGS 605 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~~~~~~~~ 605 (829)
...+++.+-| .+.+.+.++|.+.|+.... .+...+..... -....+-.+|.+|.+-- +..+.+ +........+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~~~-pvv~~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~~ 101 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLSDD-PVVASPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNAS 101 (903)
T ss_pred cccccccccc-cccCccccccceeeeeccC-ccccCCccccc-cccCCCccccceeeccC--CCccccCCccchhhhccC
Confidence 3566777777 7889999999999976432 22211111100 00111223455554432 222222 1222233455
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
|+-. +++.+|.++.++..+.+|+++ |+..|.+....++ ...++.|-.+-++..+| .+-..-|.....
T Consensus 102 pcrs-sdGi~ysg~k~d~~~lvD~~t--g~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~~~~~wn~t~~ 169 (903)
T KOG1027|consen 102 PCRS-SDGILYSGSKQDIWYLVDPKT--GEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNVRGKTWNTTFG 169 (903)
T ss_pred cccC-CCCeEEecccccceEEecCCc--cceeEEEecCCcc---------hhheecccceeEEecccCcccCceeecccc
Confidence 5544 379999999999999999998 9999988766532 23455554455566666 433344654433
Q ss_pred CceeecCcccccCCC--eEEEEeeCCeEEEEeCCCCcEEEEEecCCccc
Q 003331 685 GPIFAGPCTSFALPS--QVLICSRNGSIYSFEQESGNLLWEYSVGDPIT 731 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~--~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~ 731 (829)
......+ ...... .-+..+.+|.+.-+|.++|..+|..+..+++.
T Consensus 170 dy~a~~~--~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv 216 (903)
T KOG1027|consen 170 DYSAQYP--SGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVV 216 (903)
T ss_pred chhccCC--CccCCceeEEEeecCCccEEeccCcccceeeccccCCceE
Confidence 2221111 011111 12222337778889999999999877666543
No 483
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.33 E-value=2.5 Score=35.42 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
....|.+||.|..|..|+ ..+.+++....+.+. ....-.++.+..+..+|+|-.|+. .+.+|+.+....+.+..
T Consensus 14 g~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~--~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~ 87 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFK--GDEIVAEITETDKVT--SLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMA 87 (111)
T ss_pred CcceEEEecCCcEEEEEe--CCcEEEEEecccceE--EEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEE
Confidence 347899999999999997 457888887776653 222233457778888999999983 67889988776665555
Q ss_pred eeecCC---CEEEEeccCCeE
Q 003331 565 VVDAPR---QLIWCGSHDHNL 582 (829)
Q Consensus 565 ~~~~~~---~~i~~gs~~g~l 582 (829)
.++.++ .-|.+|-.+|.+
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEcCCCCCceEEEEEecCCeE
Confidence 544321 136666555543
No 484
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=94.28 E-value=0.46 Score=49.66 Aligned_cols=277 Identities=13% Similarity=0.090 Sum_probs=133.9
Q ss_pred EeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEe--eCCcEEEEEEeCCEEEEEE-cCCCcEEEEE--
Q 003331 481 VLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVL--ADFSQVVVGCYKGKIYFLD-YLTGDIYWTF-- 554 (829)
Q Consensus 481 ~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~--~~~~~v~vg~~dg~l~~~d-~~tG~~~w~~-- 554 (829)
.+...+..+..|+.+-.+..||-.+++..-.+..+.. .+...-+. .+...+...+.||.+..=. ..+|.+..+.
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 3445677888899999999999988887766554321 11111111 1223455555555443211 1445443221
Q ss_pred -ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC---Cc---ccccceeecCC-CEEEEEecCCeEEE
Q 003331 555 -QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---GS---IFGSPAIDEVH-DVLYVASTSGRLTA 626 (829)
Q Consensus 555 -~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~---~~---~~~~~~~~~~~-~~l~v~t~~g~l~~ 626 (829)
...+.+....+.......++..+.|+.+.-+|..++.+.-++.+. .. -..++.+++.. ..+.++..+-.+..
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 222333333233334566788888999999998877654433321 11 11223333322 23444554544555
Q ss_pred EEccCCCce----EEEeecc-----CCccee-eeeeeecCCEEEEEeeCCeEEEEc---CCCCE----------EEE-ee
Q 003331 627 ISVKALPFH----TLWLHEL-----EVPAFA-SLCITSANRHVICCLVDGHVVALD---SSGSI----------IWR-CR 682 (829)
Q Consensus 627 ~~~~~~~g~----~~w~~~~-----~~~~~~-s~~~~~~~~~l~~~~~~g~i~~~d---~~g~~----------~w~-~~ 682 (829)
||......+ .+-++-. ..+... ..++..+++.+.+.-.+-.||.++ ..|.. .-+ ++
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 553221011 0111100 111112 223333566666666677788887 24411 111 11
Q ss_pred cCCceeecCccccc--CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 683 TGGPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 683 ~~~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
...+-.....+.+- ....|..|+.=|+|+.|+.++++++-.+.....+....- +.+.--.++...-+
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE-----------pHP~~PvLAsSGid 457 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE-----------PHPHLPVLASSGID 457 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC-----------CCCCCchhhccCCc
Confidence 10000000001111 234677777779999999999998765554433322111 11123344555556
Q ss_pred CcEEEEEe
Q 003331 761 GSIHILRV 768 (829)
Q Consensus 761 G~l~~~d~ 768 (829)
..|.+|-+
T Consensus 458 ~DVKIWTP 465 (559)
T KOG1334|consen 458 HDVKIWTP 465 (559)
T ss_pred cceeeecC
Confidence 66777755
No 485
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.07 E-value=0.47 Score=47.36 Aligned_cols=146 Identities=13% Similarity=0.222 Sum_probs=89.9
Q ss_pred EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EE---EEecCCeeeeeee
Q 003331 491 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YW---TFQTCGEVKCQPV 565 (829)
Q Consensus 491 igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w---~~~~~~~~~~~~~ 565 (829)
+|... .+...|..||...- |.....+ .+.-+...+..|+.|+.+|.|+.+|+..+.. .| .+-.+..+.+-.+
T Consensus 230 ~G~sq-qv~L~nvetg~~qs-f~sksDV-fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 230 VGLSQ-QVLLTNVETGHQQS-FQSKSDV-FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ccccc-eeEEEEeecccccc-cccchhH-HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 34444 47788988887543 3322222 1333444567899999999999999876521 22 2333444444444
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeE---EEeeccCCcc--cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPCGGSI--FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~~~~~--~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
+.-++..+.+.+.+|.|..||..--++ +-.+..+.+. ....-+++..+.|+.+..|-....|.++. |..+-+.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~--ghLl~ti 384 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS--GHLLCTI 384 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc--Cceeecc
Confidence 444567788888999999999764343 4444433221 12223455667888888887777888776 6665544
Q ss_pred c
Q 003331 641 E 641 (829)
Q Consensus 641 ~ 641 (829)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 3
No 486
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=93.84 E-value=7.3 Score=43.68 Aligned_cols=231 Identities=12% Similarity=0.128 Sum_probs=121.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceE----------EeeC--CcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA----------VLAD--FSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~----------~~~~--~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
..|.+..|+++- |..+|..+-+.+-....+...+.++- .++. .-.+.++.-.|.|..+|...+..+-
T Consensus 25 ~~GLiAygshsl-V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 25 PSGLIAYGSHSL-VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred ccceEEEecCce-EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 356777888764 88889877776655555433211111 1111 1134555567899999988887654
Q ss_pred EEecCCeeeee----eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEE
Q 003331 553 TFQTCGEVKCQ----PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAI 627 (829)
Q Consensus 553 ~~~~~~~~~~~----~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~ 627 (829)
.++.+...... +.-++....+.+-.....+..|+..||+..|++.....+.+...+++ +...+.+-+..|.+...
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 34433222111 11122334555555556899999999999999987765554333333 12344445556655554
Q ss_pred Ecc-----CCCceEEEeeccC-C-----------cc---------e----eeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 628 SVK-----ALPFHTLWLHELE-V-----------PA---------F----ASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 628 ~~~-----~~~g~~~w~~~~~-~-----------~~---------~----~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
+.- ..+|+...-.... . .. | .-.++.+.-.++.+.+....++++| +--.
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 421 1123322211110 0 00 0 0012233445556666778899998 5444
Q ss_pred EEEEeecCCc--eeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 677 IIWRCRTGGP--IFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 677 ~~w~~~~~~~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.+.....+.. .+. .+++....+.+|+.-.||.+..+-.+.
T Consensus 264 ~l~vvpier~~akfv-~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 264 CLAVVPIERGGAKFV-DVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEEEEeccCCccee-EeccCCCcceEEEEecCCeEEEEEeec
Confidence 4444443221 111 111222345688888888777665443
No 487
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.81 E-value=7 Score=38.02 Aligned_cols=194 Identities=9% Similarity=-0.026 Sum_probs=97.9
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEE-EecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWT-FQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+++++|+..|.+-.|...|.+..-. .+.. ..+...--..+..-.+.+++.|..+..++.+.+..........-...+.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4677776667666666654443221 1111 1110000011123346667777666666554433222222211123455
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEee
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEV-PAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCR 682 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~ 682 (829)
.++.++....+......|..|.++.. ++.+-+ +.... ..-....+...+....+++.+|.+.+|| . .+.+.-...
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~-sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDE-SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCc-cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 56665565655566667777776652 333222 21111 1111223444455677889999999999 4 454443222
Q ss_pred c-----CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 683 T-----GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 683 ~-----~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
. .+.+....+......+.+++.-+-+.+..+|.++++-.-.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 1 1222222222223345788888888999999999875433
No 488
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=93.78 E-value=9.4 Score=39.41 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=53.1
Q ss_pred eEEeeCCCeEEEEecCCCcEEEEECC--------C----CcEEEEEEc----CCceeeceEEeeCCcEEEEEEeCCEEEE
Q 003331 479 LVVLKDSDIYLFVGSHSHKFICADAK--------R----SSVLWEIKL----EGRIECSAAVLADFSQVVVGCYKGKIYF 542 (829)
Q Consensus 479 ~v~~~d~~~~l~igs~~g~l~~~d~~--------t----g~~~w~~~~----~~~~~~~~~~~~~~~~v~vg~~dg~l~~ 542 (829)
+|-++..++.+..|+.+|.+.+|-.. + .++.|.... +..-..-.+.++++..+.+++.|+.++.
T Consensus 70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 34444556677777788888888644 2 144464321 1111224567778888999999999999
Q ss_pred EEcCCCcEEEEEecCC
Q 003331 543 LDYLTGDIYWTFQTCG 558 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~ 558 (829)
||...|.+.-...-+.
T Consensus 150 ~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHE 165 (434)
T ss_pred EEeccceeEeeccccc
Confidence 9999999887654443
No 489
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=7.7 Score=38.41 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=104.6
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC---eEEEeeccCC
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGG 600 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~ 600 (829)
.++++|+..++.+|..+|..+-. ++-.+.+.+-.. .+.-.++..|++..+..+..+|..+- .+.-++...+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay---gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY---GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE---EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 45689999999999999976532 333333332222 23335688999987777888887653 2222332222
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.-.-...++. ++-|++.+++++..+|..+..- ..+-++..+. . .......+++.|+.-.+.++...| .+-+-.
T Consensus 172 ~d~~~v~ISG--n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-g--~~sv~vsdnr~y~vvy~egvlivd~s~~ssp 246 (370)
T COG5276 172 GDTHDVAISG--NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-G--TYSVSVSDNRAYLVVYDEGVLIVDVSGPSSP 246 (370)
T ss_pred CCceeEEEec--CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC-c--eEEEEecCCeeEEEEcccceEEEecCCCCCc
Confidence 2222334544 8899999999999999875221 2222333222 1 223334567888877788888888 444444
Q ss_pred EEeec---CCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 679 WRCRT---GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 679 w~~~~---~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
|.+.. ..+...+. ....+...|+...+.++..+|.++
T Consensus 247 ~~~gsyet~~p~~~s~--v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 247 TVFGSYETSNPVSIST--VPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eEeeccccCCcccccc--eecccceeeeeccccCceeEeccC
Confidence 54432 22211111 122356778777666677776554
No 490
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.66 E-value=0.55 Score=49.70 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=52.9
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.+...++.+++..+.+.+.||.|.+||..+ -+.+-..+.--..+...+.++++++|.+|..|.-|.+|. ..++++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 344456666778999999999999999876 332221111112235677888999999999999888888 766665
No 491
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.51 E-value=11 Score=39.28 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEecCCeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCGEVK 561 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~~~~~~ 561 (829)
.++.++|+. ..+.+|.+|..--.. -+ ....+.-+..+.-.++.+.++...| ++.++. ++-+.+|.++..+...
T Consensus 109 tdG~~iy~s-~~~KvYvi~~~pp~~-~~--i~~~i~ecg~l~l~~nvL~i~~~~g-it~yn~~e~~k~vw~~~fnGsyv 182 (603)
T COG4880 109 TDGERIYVS-VNGKVYVIDKNPPLL-ET--IDCPIPECGILALGGNVLAIGEVGG-ITLYNLYESSKKVWVYNFNGSYV 182 (603)
T ss_pred cCCcEEEEE-eCCeEEEEcCCCchh-hh--cccCCccceEEEEcCcEEEEEEeCC-EEEEEeccccceeEEEecCCcee
Confidence 356677764 567799887643221 11 1222222344445566788887654 888887 7889999988776543
No 492
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.48 E-value=0.49 Score=47.24 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE--EEEE--EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE---EEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV--LWEI--KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI---YWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~--~w~~--~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~---~w~~~~ 556 (829)
.+..|+.|..+|.|+.+|+.++.. .|.. -.++...++.-... ++..+.+.+.+|.|..||..--+. +.+|+.
T Consensus 263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 467789999999999999987521 2321 12333223332223 566788888899999999754443 566655
Q ss_pred CCee--eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 557 CGEV--KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 557 ~~~~--~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
+... ....-+.+..+.|+.++.|...+.|..++|.++-+...
T Consensus 343 HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4322 12223455778899999999999999999998876544
No 493
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.46 E-value=7.2 Score=41.44 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=87.4
Q ss_pred EEEEECCCCcEEEE-EE----cCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEec--CCee--eee
Q 003331 498 FICADAKRSSVLWE-IK----LEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQT--CGEV--KCQ 563 (829)
Q Consensus 498 l~~~d~~tg~~~w~-~~----~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~--~~~~--~~~ 563 (829)
+..+|+.+++..+. .. ..+.....+....++..+++-..+ -.++.+|..+|+..+.... .+-+ ...
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 66677788876542 12 123445566777777656665433 2578889988887665432 2211 122
Q ss_pred eee--ecCCCEEEEeccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-----CCeEEEEEcc-CCC
Q 003331 564 PVV--DAPRQLIWCGSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-----SGRLTAISVK-ALP 633 (829)
Q Consensus 564 ~~~--~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-----~g~l~~~~~~-~~~ 633 (829)
+.+ .++...+++...+| +||.++..++...+.....-.+.....++.+++.||+.+. ...||.++.+ .
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-- 317 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-- 317 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--
Confidence 333 24556677766554 6999998888766433222233344556776777776543 2368888877 4
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVI 660 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~ 660 (829)
|+. -.+........+..++++++.+.
T Consensus 318 ~~~-~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 318 GEP-KCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TEE-EESSTTSSTTEEEEE-TTSSEEE
T ss_pred CCe-EeccCCCCCceEEEECCCCCEEE
Confidence 433 23332222213455555544443
No 494
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.29 Score=51.49 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=94.8
Q ss_pred CCeEEEEecCCCcEEEEECC-------CCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe--
Q 003331 485 SDIYLFVGSHSHKFICADAK-------RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-- 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-- 555 (829)
..+..+.++.|.++..|..+ |....|++..+.+......+..+. -++.+-|++|..||+--|+++-...
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RSIASCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ceeeeccCcceeecccccchhHhhhcC
Confidence 44556667788888888754 334678877776655556665552 2555558999999998888754221
Q ss_pred ----cCCeeeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCe--EEEeecc-C--CcccccceeecCCCEEEEEecCCeEE
Q 003331 556 ----TCGEVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYR--CVYKLPC-G--GSIFGSPAIDEVHDVLYVASTSGRLT 625 (829)
Q Consensus 556 ----~~~~~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~--~~w~~~~-~--~~~~~~~~~~~~~~~l~v~t~~g~l~ 625 (829)
..+.+++.+.++ ...+..| +...++..+|...++ +.|+.-. . ........+.+.++.+.++-.+|.+.
T Consensus 824 pk~~a~~~ikcl~nv~--~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVD--RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred cccCCCceeEecccCc--chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEE
Confidence 123444444332 3445555 566789999988765 3455432 1 22344455666677888888899999
Q ss_pred EEEccCCCceEE
Q 003331 626 AISVKALPFHTL 637 (829)
Q Consensus 626 ~~~~~~~~g~~~ 637 (829)
.+|..+ |+.+
T Consensus 902 ~LDaR~--G~vI 911 (1034)
T KOG4190|consen 902 ILDARN--GKVI 911 (1034)
T ss_pred EEecCC--Ccee
Confidence 999888 8765
No 495
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.29 E-value=7.8 Score=36.97 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=31.1
Q ss_pred ccCCCeEEEEeeC-CeEEEEeCCCCcEEEEEecCCccccc
Q 003331 695 FALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGDPITAS 733 (829)
Q Consensus 695 ~~~~~~i~~~t~~-g~l~~~d~~tG~~~w~~~~~~~~~~~ 733 (829)
.+.+|.+|+.+.+ |+|+.+|+.||+++-++.++.+-..+
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 4567899999875 57999999999999888877654433
No 496
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=93.22 E-value=1.1 Score=46.92 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=32.0
Q ss_pred CeEEEEEcCC-CeEEEeeccCC--ccccccee-ecC-C---CEEEEEecCCeEEEEEccC
Q 003331 580 HNLYALDFRN-YRCVYKLPCGG--SIFGSPAI-DEV-H---DVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 580 g~l~~~d~~t-g~~~w~~~~~~--~~~~~~~~-~~~-~---~~l~v~t~~g~l~~~~~~~ 631 (829)
..||.+|+++ |+.+|++.... ...+.|.+ +.+ + +.+|+|...|.|+++|+..
T Consensus 181 ~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 181 AALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--T
T ss_pred cEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCC
Confidence 4699999999 99999987643 12334433 211 2 3689999999999999874
No 497
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.11 E-value=1.1 Score=50.69 Aligned_cols=280 Identities=11% Similarity=0.074 Sum_probs=142.0
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEEC--CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE
Q 003331 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADA--KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 539 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~--~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~ 539 (829)
.+..|.....+++.+.-.. .....+|+|+..|....+=+ .+|-..|....-+.+. ....... .++.-+ +..
T Consensus 45 ~~L~~~~~~~G~vS~v~fd---~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~-~~~~~~~--~i~~ls-~~a 117 (1118)
T KOG1275|consen 45 AELISVGASYGTVSSVHFD---LHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVR-RIEPTES--GIFTLS-KTA 117 (1118)
T ss_pred cceeeeccccccccccccC---chHHhheecccCCceeeeecccccceEEEEEeccchhh-hhhhhhh--hheeee-HHH
Confidence 5677888877766543222 26778999999887665543 3344445443222111 1111111 122221 111
Q ss_pred EEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 540 IYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 540 l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
+ ..-...|.++..+.....- +.+.+.. +...+..|.....+..+|..+++.........+- ..++-.++..+++|
T Consensus 118 l-r~~~r~gl~~~~~~~~s~~~M~~~~~~-~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G 193 (1118)
T KOG1275|consen 118 L-RATTRQGLPVFDFTCPSMTKMASSLHM-GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCG 193 (1118)
T ss_pred h-hhhhccCceeecccCCCHHHHHHHhcc-CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEee
Confidence 1 1122345555544433311 1111122 3345556666667999999988877666554322 12233345778899
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC---Cce--eecCc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG---GPI--FAGPC 692 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~---~~~--~~~~~ 692 (829)
...|.|...|+++ .+.+.++..+....+. +...++.+..++..+..+-+. .-=-.+|-...- .|+ ...|.
T Consensus 194 ~t~G~V~LrD~~s--~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~ 269 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNS--FETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ 269 (1118)
T ss_pred cccceEEeecCCc--Cceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch
Confidence 9999999999998 8888888776654433 333577777776655443222 100112221110 011 01110
Q ss_pred ----ccccCCCeEEEEeeCCeEEEEeCCC-CcE-EE-EEecCCccccccccccccccccccccCCCcEEEEEccCCcEEE
Q 003331 693 ----TSFALPSQVLICSRNGSIYSFEQES-GNL-LW-EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 765 (829)
Q Consensus 693 ----~~~~~~~~i~~~t~~g~l~~~d~~t-G~~-~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~ 765 (829)
.+. --..+.+.+..|.....|..+ +.. .- .+..+....... -....+++.+.+|..+|.|..
T Consensus 270 flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~----------fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 270 FLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA----------FDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred hhhhccc-ccceEEEEecccceeeccccccCCCccceeEEccCCCccee----------EEecCCCceEEEecccCcEee
Confidence 111 123566777777777777322 111 11 111111110000 112334889999999999999
Q ss_pred EE
Q 003331 766 LR 767 (829)
Q Consensus 766 ~d 767 (829)
|.
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 96
No 498
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.01 E-value=16 Score=39.83 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=104.1
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-----------EEEEEEcCCCc----EEEEEecCCeee
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-----------KIYFLDYLTGD----IYWTFQTCGEVK 561 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-----------~l~~~d~~tG~----~~w~~~~~~~~~ 561 (829)
.++.+|+.+|+.+-.. +......++.+.+++..+|....+. .|++++..++. +++.-..+....
T Consensus 151 ~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 5999999999876431 1111111267777766665554332 37888877663 333222122112
Q ss_pred eeeeeecCCCEEEEecc---C-CeEEEEEcCCC---eEEEee--ccCCcccccceeecCCCEEEEEec----CCeEEEEE
Q 003331 562 CQPVVDAPRQLIWCGSH---D-HNLYALDFRNY---RCVYKL--PCGGSIFGSPAIDEVHDVLYVAST----SGRLTAIS 628 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~---~-g~l~~~d~~tg---~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~----~g~l~~~~ 628 (829)
.....+.++..+++.+. + ..++.+|..++ ...|+. ......... +...++.+|+-|. ++.|+.++
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--VDHHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--EEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE--EEccCCEEEEeeCCCCCCcEEEEec
Confidence 33344556677666432 2 45888888775 222222 111111111 2222577887664 36788888
Q ss_pred ccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCC---eEEEEcCC-CCEEEEeecCCceeecCcccccCCCeEE
Q 003331 629 VKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDG---HVVALDSS-GSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 629 ~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~-g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
+++..- ..|.... ......-..+...++.+++....+ .|.+++.+ +.......................+.++
T Consensus 308 l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 308 LADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp TTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred cccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 876221 1233111 111111112223355555544332 45667744 5555554443221101111112234555
Q ss_pred EEee----CCeEEEEeCCCCcEE
Q 003331 703 ICSR----NGSIYSFEQESGNLL 721 (829)
Q Consensus 703 ~~t~----~g~l~~~d~~tG~~~ 721 (829)
+... -+.+|.+|..+|+..
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEeCCCCCCEEEEEECCCCCEE
Confidence 5432 257999999999873
No 499
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=92.98 E-value=0.35 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 506 SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 506 g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
|+++..+..+.....+..+.+++..+++++.|+.|..||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345566777766667888888889999999999999987
No 500
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=92.81 E-value=2.3 Score=49.07 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=86.9
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee--eeeeeeecCCC--EEEEeccCCeEEEEEcCC-CeEEEeecc
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV--KCQPVVDAPRQ--LIWCGSHDHNLYALDFRN-YRCVYKLPC 598 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~--~i~~gs~~g~l~~~d~~t-g~~~w~~~~ 598 (829)
+..+.+.+++++.++.+..+|.+.+.+......+... .+..+..+... ++++|+--+.|+.|++.- ..+. ....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~G 173 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKG 173 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecc
Confidence 3345567888888999999998888777655444322 22222322333 355567778888888752 1222 2223
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-ceeeeeeeecCCEEEEEeeCCeEEEEcCCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-AFASLCITSANRHVICCLVDGHVVALDSSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~ 677 (829)
+....-++....++.++...+.|..+..|++++ ++..--...+.+ .....++. .+.++.++.|-+..+|+.+|+.
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~fgHsaRvw~~~~~--~n~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTGFGHSARVWACCFL--PNRIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeeccc--ccccCcccccccceeEEEEec--cceeEEeccceEEEEEecccce
Confidence 334444566666678899999999999999887 432210000000 01122222 3377888777777777544443
Done!