Query 003336
Match_columns 828
No_of_seqs 373 out of 2352
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12490 BCAS3: Breast carcino 100.0 3E-56 6.5E-61 471.1 15.2 237 457-694 1-251 (251)
2 KOG2109 WD40 repeat protein [G 100.0 1.3E-51 2.8E-56 461.7 18.0 600 2-708 41-653 (788)
3 KOG2110 Uncharacterized conser 100.0 2.8E-33 6.1E-38 298.7 30.8 230 17-412 16-250 (391)
4 KOG2111 Uncharacterized conser 100.0 4.9E-30 1.1E-34 269.9 26.0 238 17-412 16-258 (346)
5 KOG0271 Notchless-like WD40 re 99.9 4.4E-23 9.4E-28 221.1 18.1 280 16-426 167-455 (480)
6 KOG0263 Transcription initiati 99.9 9.1E-22 2E-26 226.4 21.5 177 117-414 473-653 (707)
7 KOG0315 G-protein beta subunit 99.9 2E-20 4.3E-25 192.1 23.9 274 18-423 11-301 (311)
8 KOG0272 U4/U6 small nuclear ri 99.9 2.8E-21 6.1E-26 209.6 18.0 243 18-427 188-435 (459)
9 KOG0272 U4/U6 small nuclear ri 99.8 4.4E-20 9.6E-25 200.4 14.5 222 18-408 232-458 (459)
10 KOG0271 Notchless-like WD40 re 99.8 1.7E-19 3.7E-24 193.7 18.7 240 18-426 127-413 (480)
11 KOG0286 G-protein beta subunit 99.8 4E-18 8.7E-23 178.5 26.1 233 117-426 77-319 (343)
12 KOG0291 WD40-repeat-containing 99.8 5E-18 1.1E-22 194.3 28.7 278 18-420 277-560 (893)
13 cd00200 WD40 WD40 domain, foun 99.8 3.7E-17 8E-22 165.6 30.1 221 19-408 65-289 (289)
14 KOG0279 G protein beta subunit 99.8 6.3E-18 1.4E-22 176.2 24.4 185 115-419 83-271 (315)
15 cd00200 WD40 WD40 domain, foun 99.8 9.3E-17 2E-21 162.7 30.9 236 18-422 21-261 (289)
16 KOG0273 Beta-transducin family 99.8 1.7E-17 3.6E-22 182.4 26.7 271 18-410 247-523 (524)
17 PLN00181 protein SPA1-RELATED; 99.8 2.8E-17 6E-22 200.7 31.5 227 18-409 546-792 (793)
18 KOG0266 WD40 repeat-containing 99.8 4.6E-17 9.9E-22 187.1 26.0 192 115-424 179-378 (456)
19 KOG0295 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 179.0 19.1 238 18-408 162-404 (406)
20 KOG0266 WD40 repeat-containing 99.8 1.2E-16 2.6E-21 183.7 28.0 237 19-422 172-421 (456)
21 KOG0315 G-protein beta subunit 99.8 8.3E-17 1.8E-21 165.7 22.6 230 115-422 18-258 (311)
22 KOG0295 WD40 repeat-containing 99.8 2E-17 4.3E-22 177.4 17.7 236 18-422 120-376 (406)
23 KOG0318 WD40 repeat stress pro 99.7 1.8E-15 3.9E-20 168.3 31.7 314 18-419 203-569 (603)
24 KOG0263 Transcription initiati 99.7 9.1E-17 2E-21 185.6 19.3 116 294-426 508-623 (707)
25 KOG1446 Histone H3 (Lys4) meth 99.7 4.1E-15 8.8E-20 157.7 29.6 239 17-421 25-273 (311)
26 PLN00181 protein SPA1-RELATED; 99.7 3.3E-15 7.1E-20 182.6 33.4 180 117-412 555-740 (793)
27 KOG0286 G-protein beta subunit 99.7 1.5E-15 3.2E-20 159.4 25.6 238 2-408 80-343 (343)
28 KOG0276 Vesicle coat complex C 99.7 5.9E-16 1.3E-20 174.5 23.3 209 117-446 35-260 (794)
29 KOG0279 G protein beta subunit 99.7 2E-15 4.3E-20 157.8 25.5 225 18-411 76-314 (315)
30 KOG0281 Beta-TrCP (transducin 99.7 1.9E-17 4E-22 176.3 9.6 214 24-414 214-432 (499)
31 KOG0268 Sof1-like rRNA process 99.7 9.8E-17 2.1E-21 171.9 14.7 255 18-412 80-347 (433)
32 KOG0292 Vesicle coat complex C 99.7 4.3E-16 9.4E-21 180.5 20.9 265 16-419 19-289 (1202)
33 KOG0274 Cdc4 and related F-box 99.7 1.2E-15 2.6E-20 177.7 24.2 226 18-418 262-490 (537)
34 KOG0278 Serine/threonine kinas 99.7 2E-16 4.4E-21 162.8 15.5 184 18-354 113-299 (334)
35 PTZ00421 coronin; Provisional 99.7 1.3E-14 2.8E-19 168.1 32.5 221 28-414 52-294 (493)
36 KOG0319 WD40-repeat-containing 99.7 6.5E-16 1.4E-20 177.1 21.0 227 117-426 303-551 (775)
37 KOG0274 Cdc4 and related F-box 99.7 1.4E-15 3E-20 177.1 23.6 231 18-421 219-452 (537)
38 KOG0265 U5 snRNP-specific prot 99.7 1.4E-15 3E-20 160.2 21.0 246 18-426 60-312 (338)
39 KOG0284 Polyadenylation factor 99.7 1E-16 2.2E-21 173.9 12.5 223 18-410 109-337 (464)
40 KOG0319 WD40-repeat-containing 99.7 3.5E-15 7.6E-20 171.2 24.2 289 17-424 293-591 (775)
41 KOG0288 WD40 repeat protein Ti 99.7 6.9E-16 1.5E-20 167.7 17.0 225 16-408 230-459 (459)
42 KOG0273 Beta-transducin family 99.7 9.9E-16 2.1E-20 168.6 18.2 189 115-426 255-456 (524)
43 KOG0285 Pleiotropic regulator 99.7 1.3E-15 2.9E-20 163.0 18.6 191 116-428 172-366 (460)
44 KOG0276 Vesicle coat complex C 99.7 1.5E-15 3.3E-20 171.2 19.7 230 19-416 27-263 (794)
45 KOG1036 Mitotic spindle checkp 99.7 2.1E-15 4.6E-20 159.4 18.8 219 18-400 66-294 (323)
46 KOG0306 WD40-repeat-containing 99.7 3.1E-15 6.6E-20 171.7 19.7 225 18-411 424-665 (888)
47 KOG0265 U5 snRNP-specific prot 99.7 1.1E-14 2.5E-19 153.3 22.0 224 17-408 102-336 (338)
48 KOG0643 Translation initiation 99.7 2.4E-14 5.2E-19 148.9 24.1 239 18-411 23-318 (327)
49 KOG0291 WD40-repeat-containing 99.7 2.9E-14 6.2E-19 163.9 26.9 253 15-421 359-623 (893)
50 KOG0285 Pleiotropic regulator 99.6 5.9E-15 1.3E-19 158.1 18.6 226 16-412 161-391 (460)
51 KOG0647 mRNA export protein (c 99.6 1E-14 2.3E-19 153.7 19.4 216 18-399 85-312 (347)
52 KOG0318 WD40 repeat stress pro 99.6 8.8E-14 1.9E-18 155.0 27.6 109 295-419 164-274 (603)
53 KOG0282 mRNA splicing factor [ 99.6 8.2E-16 1.8E-20 169.8 11.5 242 18-423 228-475 (503)
54 PTZ00420 coronin; Provisional 99.6 2.7E-13 5.8E-18 158.9 32.2 219 29-412 56-295 (568)
55 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.4E-12 3.1E-17 137.1 34.4 271 20-420 4-289 (300)
56 KOG0281 Beta-TrCP (transducin 99.6 1.7E-15 3.7E-20 161.4 11.7 227 18-412 247-479 (499)
57 KOG0316 Conserved WD40 repeat- 99.6 2.4E-14 5.2E-19 146.7 19.3 232 18-421 30-268 (307)
58 KOG1407 WD40 repeat protein [F 99.6 3.5E-14 7.6E-19 147.3 20.6 228 18-413 33-264 (313)
59 KOG0316 Conserved WD40 repeat- 99.6 2.2E-14 4.7E-19 147.1 18.8 184 117-425 39-228 (307)
60 KOG0264 Nucleosome remodeling 99.6 1.3E-14 2.8E-19 159.6 18.1 133 294-442 243-382 (422)
61 KOG2055 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 158.7 17.2 178 117-412 325-514 (514)
62 KOG0310 Conserved WD40 repeat- 99.6 4.8E-14 1E-18 156.2 20.5 233 5-408 65-307 (487)
63 KOG0296 Angio-associated migra 99.6 1.4E-13 3.1E-18 148.1 23.1 235 16-410 158-398 (399)
64 KOG0310 Conserved WD40 repeat- 99.6 4.1E-14 8.9E-19 156.7 18.4 230 19-418 40-276 (487)
65 PTZ00420 coronin; Provisional 99.6 3.4E-13 7.5E-18 157.9 27.1 106 295-417 142-255 (568)
66 KOG0277 Peroxisomal targeting 99.6 6.7E-14 1.5E-18 144.8 17.8 222 28-414 39-269 (311)
67 KOG0288 WD40 repeat protein Ti 99.6 2.1E-14 4.5E-19 156.3 14.3 235 18-420 188-427 (459)
68 KOG0313 Microtubule binding pr 99.6 4.8E-13 1E-17 144.6 23.3 268 17-426 115-393 (423)
69 KOG0645 WD40 repeat protein [G 99.6 1.2E-12 2.7E-17 136.6 25.2 176 117-410 37-225 (312)
70 PTZ00421 coronin; Provisional 99.6 7E-13 1.5E-17 153.8 26.2 107 294-416 141-251 (493)
71 KOG0292 Vesicle coat complex C 99.5 1.1E-13 2.3E-18 161.1 18.1 203 117-426 31-254 (1202)
72 KOG0284 Polyadenylation factor 99.5 3E-14 6.5E-19 154.9 11.5 242 6-415 129-385 (464)
73 KOG0305 Anaphase promoting com 99.5 6.4E-13 1.4E-17 151.3 21.9 230 16-412 227-463 (484)
74 KOG0275 Conserved WD40 repeat- 99.5 2.2E-14 4.8E-19 151.8 8.4 125 294-441 278-403 (508)
75 KOG0305 Anaphase promoting com 99.5 1.2E-12 2.5E-17 149.2 23.0 237 18-424 188-433 (484)
76 KOG0973 Histone transcription 99.5 3.2E-13 7E-18 160.9 19.1 240 294-541 28-358 (942)
77 KOG1539 WD repeat protein [Gen 99.5 1E-11 2.2E-16 144.6 30.4 120 297-418 466-614 (910)
78 KOG0264 Nucleosome remodeling 99.5 1.3E-12 2.9E-17 143.9 21.8 114 294-411 288-405 (422)
79 KOG0313 Microtubule binding pr 99.5 1.6E-12 3.5E-17 140.6 22.0 225 19-412 161-420 (423)
80 KOG0277 Peroxisomal targeting 99.5 3.8E-13 8.3E-18 139.3 15.1 226 18-408 74-307 (311)
81 KOG1407 WD40 repeat protein [F 99.5 1.3E-11 2.7E-16 128.6 23.8 172 117-410 128-311 (313)
82 KOG0282 mRNA splicing factor [ 99.5 1.6E-13 3.4E-18 151.9 10.3 176 116-411 236-416 (503)
83 KOG1539 WD repeat protein [Gen 99.5 5.7E-12 1.2E-16 146.7 23.3 174 115-411 468-649 (910)
84 KOG0645 WD40 repeat protein [G 99.5 2.8E-11 6.1E-16 126.6 26.1 239 20-410 30-311 (312)
85 KOG0772 Uncharacterized conser 99.5 1.8E-12 3.9E-17 144.3 18.1 111 294-419 332-454 (641)
86 KOG0772 Uncharacterized conser 99.4 1.3E-12 2.8E-17 145.5 16.3 113 292-417 282-401 (641)
87 KOG0269 WD40 repeat-containing 99.4 5.7E-13 1.2E-17 153.9 14.0 115 297-427 195-314 (839)
88 KOG0289 mRNA splicing factor [ 99.4 7.4E-12 1.6E-16 137.3 21.8 228 18-411 232-463 (506)
89 KOG0308 Conserved WD40 repeat- 99.4 3.6E-13 7.8E-18 153.1 11.9 113 295-424 134-257 (735)
90 KOG0643 Translation initiation 99.4 1.8E-11 3.8E-16 127.9 22.1 188 117-420 32-230 (327)
91 KOG0293 WD40 repeat-containing 99.4 2.3E-12 5E-17 140.4 15.5 225 17-412 281-515 (519)
92 KOG0640 mRNA cleavage stimulat 99.4 2.8E-12 6.1E-17 135.7 14.8 105 301-420 238-345 (430)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 9.3E-11 2E-15 123.3 26.1 176 117-414 11-191 (300)
94 KOG0275 Conserved WD40 repeat- 99.4 6.6E-13 1.4E-17 140.8 9.4 206 114-424 232-481 (508)
95 KOG0308 Conserved WD40 repeat- 99.4 3.9E-12 8.5E-17 144.8 15.7 102 294-412 186-287 (735)
96 KOG1408 WD40 repeat protein [F 99.4 8.7E-12 1.9E-16 142.6 18.0 214 117-411 481-714 (1080)
97 KOG0641 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 119.3 23.3 242 17-410 100-349 (350)
98 KOG0306 WD40-repeat-containing 99.4 8.5E-11 1.8E-15 135.8 25.1 236 117-424 394-636 (888)
99 KOG0278 Serine/threonine kinas 99.4 2.3E-12 5E-17 133.2 11.0 220 113-414 77-301 (334)
100 KOG1274 WD40 repeat protein [G 99.4 7.2E-11 1.6E-15 139.0 24.0 176 117-411 76-263 (933)
101 KOG0973 Histone transcription 99.4 7E-11 1.5E-15 141.3 24.3 239 16-411 79-356 (942)
102 KOG1446 Histone H3 (Lys4) meth 99.4 2.4E-10 5.3E-15 121.8 25.8 229 18-412 69-305 (311)
103 KOG0639 Transducin-like enhanc 99.4 1.2E-11 2.7E-16 137.2 16.1 263 16-409 430-703 (705)
104 KOG4283 Transcription-coupled 99.3 4.5E-11 9.7E-16 126.1 18.8 112 298-412 165-278 (397)
105 KOG0267 Microtubule severing p 99.3 1.9E-12 4.1E-17 148.7 8.4 164 117-401 92-259 (825)
106 KOG0299 U3 snoRNP-associated p 99.3 4.3E-11 9.4E-16 132.3 18.3 213 18-398 215-443 (479)
107 KOG2096 WD40 repeat protein [G 99.3 1.7E-10 3.7E-15 122.8 21.7 98 312-411 269-403 (420)
108 KOG0283 WD40 repeat-containing 99.3 2.5E-11 5.5E-16 141.9 16.2 110 292-420 381-491 (712)
109 KOG2109 WD40 repeat protein [G 99.3 2.4E-12 5.3E-17 146.9 7.5 320 17-423 251-589 (788)
110 KOG0301 Phospholipase A2-activ 99.3 1.5E-10 3.1E-15 133.1 19.7 215 19-412 73-290 (745)
111 KOG0270 WD40 repeat-containing 99.3 2.3E-10 4.9E-15 126.2 19.8 103 296-413 347-452 (463)
112 KOG0289 mRNA splicing factor [ 99.3 1.1E-10 2.4E-15 128.3 16.9 107 295-418 319-427 (506)
113 KOG1408 WD40 repeat protein [F 99.3 1.8E-10 4E-15 132.0 19.3 126 293-422 473-638 (1080)
114 KOG0307 Vesicle coat complex C 99.3 2.3E-11 4.9E-16 146.0 12.4 233 19-412 81-329 (1049)
115 KOG0283 WD40 repeat-containing 99.3 2.5E-10 5.5E-15 133.7 20.4 179 112-413 385-579 (712)
116 KOG1273 WD40 repeat protein [G 99.3 3.2E-10 7E-15 120.7 19.2 248 18-420 35-290 (405)
117 KOG2096 WD40 repeat protein [G 99.2 2.9E-10 6.2E-15 121.2 18.5 108 294-411 202-309 (420)
118 KOG0267 Microtubule severing p 99.2 8.5E-12 1.8E-16 143.4 6.8 180 117-417 50-233 (825)
119 KOG0301 Phospholipase A2-activ 99.2 3.1E-10 6.7E-15 130.5 19.3 207 117-410 35-249 (745)
120 KOG4378 Nuclear protein COP1 [ 99.2 7.2E-11 1.6E-15 131.1 13.8 189 116-424 100-295 (673)
121 KOG0268 Sof1-like rRNA process 99.2 4.6E-11 1E-15 128.9 11.9 216 115-412 87-304 (433)
122 KOG0647 mRNA export protein (c 99.2 1.6E-09 3.4E-14 115.1 23.1 227 19-412 41-283 (347)
123 KOG0299 U3 snoRNP-associated p 99.2 5.3E-10 1.1E-14 123.8 20.2 177 117-412 224-412 (479)
124 KOG0296 Angio-associated migra 99.2 2.1E-09 4.5E-14 116.4 24.0 183 117-419 86-272 (399)
125 KOG1332 Vesicle coat complex C 99.2 9.1E-10 2E-14 114.1 20.1 248 18-414 24-290 (299)
126 KOG0293 WD40 repeat-containing 99.2 8.9E-11 1.9E-15 128.3 12.9 185 18-353 325-514 (519)
127 KOG0294 WD40 repeat-containing 99.2 2.8E-10 6E-15 121.3 15.7 61 293-354 99-159 (362)
128 KOG0639 Transducin-like enhanc 99.2 1.8E-10 4E-15 128.0 13.7 110 298-410 528-663 (705)
129 KOG2106 Uncharacterized conser 99.2 1.2E-08 2.5E-13 114.2 27.8 104 293-418 382-485 (626)
130 KOG0300 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 116.6 17.5 110 294-420 287-397 (481)
131 KOG2919 Guanine nucleotide-bin 99.1 7E-10 1.5E-14 118.5 15.7 106 299-418 228-335 (406)
132 KOG0640 mRNA cleavage stimulat 99.1 7.6E-10 1.6E-14 117.6 15.7 60 294-354 276-337 (430)
133 KOG1036 Mitotic spindle checkp 99.1 5.1E-09 1.1E-13 111.5 21.9 237 18-420 26-272 (323)
134 KOG0302 Ribosome Assembly prot 99.1 2.2E-10 4.8E-15 124.2 11.7 106 292-412 271-380 (440)
135 KOG0302 Ribosome Assembly prot 99.1 4.3E-10 9.4E-15 122.0 13.7 119 293-426 226-351 (440)
136 KOG4283 Transcription-coupled 99.1 6.5E-09 1.4E-13 110.1 21.9 135 116-354 123-278 (397)
137 KOG4328 WD40 protein [Function 99.1 1.3E-09 2.8E-14 120.7 16.8 99 299-410 299-399 (498)
138 KOG2445 Nuclear pore complex c 99.1 2E-08 4.3E-13 107.1 25.0 108 300-411 198-319 (361)
139 KOG1034 Transcriptional repres 99.1 1.6E-09 3.5E-14 116.0 16.9 254 18-409 106-382 (385)
140 KOG2048 WD40 repeat protein [G 99.1 7.1E-09 1.5E-13 119.3 22.7 189 116-423 46-246 (691)
141 KOG0646 WD40 repeat protein [G 99.1 2.3E-09 5E-14 119.0 17.9 121 293-419 190-316 (476)
142 KOG0641 WD40 repeat protein [G 99.1 1.2E-08 2.7E-13 104.5 21.8 100 294-410 197-303 (350)
143 KOG0321 WD40 repeat-containing 99.1 8.8E-10 1.9E-14 125.8 14.8 122 299-443 238-372 (720)
144 KOG1274 WD40 repeat protein [G 99.1 7.5E-09 1.6E-13 122.3 22.7 218 19-403 68-293 (933)
145 KOG1272 WD40-repeat-containing 99.1 1.6E-10 3.5E-15 127.9 8.4 210 117-410 151-362 (545)
146 KOG0646 WD40 repeat protein [G 99.1 7.5E-10 1.6E-14 122.8 13.5 106 299-412 101-208 (476)
147 KOG0294 WD40 repeat-containing 99.1 1.6E-09 3.4E-14 115.6 14.9 107 295-418 57-165 (362)
148 PRK11028 6-phosphogluconolacto 99.1 1E-07 2.2E-12 104.5 29.7 112 299-421 146-269 (330)
149 PRK11028 6-phosphogluconolacto 99.1 6.9E-08 1.5E-12 105.8 28.3 105 299-416 195-310 (330)
150 KOG2055 WD40 repeat protein [G 99.0 9.8E-09 2.1E-13 114.0 19.6 98 297-411 321-418 (514)
151 PRK01742 tolB translocation pr 99.0 5.5E-08 1.2E-12 111.3 26.3 78 325-422 336-415 (429)
152 KOG2048 WD40 repeat protein [G 99.0 4.9E-08 1.1E-12 112.6 25.5 233 17-411 80-320 (691)
153 COG2319 FOG: WD40 repeat [Gene 99.0 3.9E-07 8.4E-12 96.2 30.8 182 117-418 134-322 (466)
154 KOG1188 WD40 repeat protein [G 99.0 3.2E-09 7E-14 114.3 14.8 105 300-418 142-250 (376)
155 KOG0269 WD40 repeat-containing 99.0 4.2E-10 9.1E-15 130.6 8.6 105 294-414 149-254 (839)
156 KOG0650 WD40 repeat nucleolar 99.0 1.7E-08 3.7E-13 114.7 21.0 302 16-407 410-732 (733)
157 KOG0300 WD40 repeat-containing 99.0 1.7E-08 3.8E-13 107.5 19.8 97 297-411 332-429 (481)
158 KOG1587 Cytoplasmic dynein int 99.0 2.8E-08 6E-13 116.3 22.5 98 299-411 418-517 (555)
159 KOG0650 WD40 repeat nucleolar 99.0 3.9E-09 8.4E-14 119.9 14.5 97 300-412 586-682 (733)
160 KOG1007 WD repeat protein TSSC 99.0 1.4E-08 3.1E-13 107.3 17.7 117 294-411 230-362 (370)
161 KOG2106 Uncharacterized conser 99.0 1.8E-07 4E-12 104.9 27.3 96 298-409 425-520 (626)
162 KOG4328 WD40 protein [Function 99.0 1.3E-08 2.8E-13 112.9 17.1 108 295-410 339-450 (498)
163 KOG1009 Chromatin assembly com 99.0 2.2E-09 4.7E-14 117.6 10.5 130 294-426 29-169 (434)
164 KOG0322 G-protein beta subunit 99.0 9.7E-09 2.1E-13 107.5 14.2 70 323-409 253-322 (323)
165 COG2319 FOG: WD40 repeat [Gene 98.9 1.1E-06 2.4E-11 92.7 29.7 223 24-413 130-362 (466)
166 KOG1445 Tumor-specific antigen 98.9 3E-09 6.5E-14 120.9 10.3 100 295-411 644-751 (1012)
167 PRK03629 tolB translocation pr 98.9 9.3E-07 2E-11 101.4 30.4 101 302-422 312-417 (429)
168 KOG1273 WD40 repeat protein [G 98.9 4.4E-09 9.6E-14 112.2 9.3 129 293-422 37-195 (405)
169 KOG2110 Uncharacterized conser 98.9 8.3E-07 1.8E-11 96.8 25.8 199 118-421 107-343 (391)
170 KOG1034 Transcriptional repres 98.9 6.3E-09 1.4E-13 111.6 9.5 101 295-411 109-212 (385)
171 PRK05137 tolB translocation pr 98.9 1.2E-06 2.7E-11 100.3 29.0 81 302-401 315-397 (435)
172 KOG2111 Uncharacterized conser 98.9 1.5E-06 3.3E-11 93.4 27.1 108 302-412 205-324 (346)
173 KOG0321 WD40 repeat-containing 98.9 7.1E-08 1.5E-12 110.6 17.7 101 299-415 291-396 (720)
174 KOG0290 Conserved WD40 repeat- 98.8 1.3E-07 2.8E-12 100.3 18.2 90 300-401 265-357 (364)
175 KOG1332 Vesicle coat complex C 98.8 2.7E-08 5.9E-13 103.3 11.4 106 294-414 26-138 (299)
176 KOG1007 WD repeat protein TSSC 98.8 3.3E-07 7.2E-12 97.2 18.2 103 298-416 190-295 (370)
177 KOG1963 WD40 repeat protein [G 98.8 1.7E-06 3.8E-11 102.5 25.8 108 294-419 220-331 (792)
178 KOG0307 Vesicle coat complex C 98.7 2.3E-08 5E-13 120.7 9.7 103 295-412 178-286 (1049)
179 KOG1063 RNA polymerase II elon 98.7 4E-07 8.6E-12 105.4 19.1 112 300-414 168-301 (764)
180 PF08662 eIF2A: Eukaryotic tra 98.7 1.1E-07 2.3E-12 97.8 13.2 92 297-410 79-179 (194)
181 KOG0303 Actin-binding protein 98.7 1.5E-07 3.3E-12 103.1 14.9 119 294-429 147-271 (472)
182 KOG3881 Uncharacterized conser 98.7 6.6E-07 1.4E-11 98.2 19.4 107 293-415 218-325 (412)
183 KOG1063 RNA polymerase II elon 98.7 2.9E-08 6.2E-13 114.6 8.5 99 301-412 552-650 (764)
184 PRK04922 tolB translocation pr 98.7 1E-05 2.2E-10 92.8 29.0 94 302-414 317-413 (433)
185 KOG0303 Actin-binding protein 98.7 1.2E-07 2.5E-12 104.0 11.9 113 294-424 97-217 (472)
186 PRK02889 tolB translocation pr 98.7 1.1E-05 2.3E-10 92.5 28.6 72 324-413 330-404 (427)
187 KOG0642 Cell-cycle nuclear pro 98.7 6.3E-08 1.4E-12 109.8 9.3 114 292-412 307-428 (577)
188 KOG0290 Conserved WD40 repeat- 98.6 6.9E-07 1.5E-11 94.9 16.1 106 293-413 211-321 (364)
189 KOG0270 WD40 repeat-containing 98.6 2.3E-07 4.9E-12 103.0 12.9 118 292-426 257-377 (463)
190 KOG0771 Prolactin regulatory e 98.6 3.1E-07 6.6E-12 101.5 13.0 75 321-411 281-355 (398)
191 KOG1445 Tumor-specific antigen 98.6 4E-07 8.8E-12 104.1 13.6 93 295-402 694-786 (1012)
192 KOG4378 Nuclear protein COP1 [ 98.6 8.8E-07 1.9E-11 99.3 15.8 207 18-392 92-305 (673)
193 KOG1963 WD40 repeat protein [G 98.6 4.9E-06 1.1E-10 98.8 21.8 102 299-413 179-284 (792)
194 KOG1517 Guanine nucleotide bin 98.6 2.1E-06 4.6E-11 103.1 18.4 108 293-412 1271-1383(1387)
195 PRK01742 tolB translocation pr 98.5 3.2E-06 7E-11 96.8 19.2 89 303-412 274-363 (429)
196 KOG0771 Prolactin regulatory e 98.5 4.1E-07 9E-12 100.5 10.3 120 293-414 158-315 (398)
197 KOG1517 Guanine nucleotide bin 98.5 6E-06 1.3E-10 99.4 20.0 103 293-410 1223-1333(1387)
198 KOG2394 WD40 protein DMR-N9 [G 98.5 1.4E-07 3E-12 106.6 6.0 91 312-421 281-371 (636)
199 TIGR02800 propeller_TolB tol-p 98.5 6.2E-05 1.3E-09 85.0 27.3 85 302-405 303-389 (417)
200 KOG2394 WD40 protein DMR-N9 [G 98.5 1.1E-06 2.5E-11 99.4 12.8 61 293-354 304-364 (636)
201 KOG1524 WD40 repeat-containing 98.5 3.1E-06 6.6E-11 95.8 15.9 85 294-409 201-286 (737)
202 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00043 9.2E-09 77.7 32.9 103 299-418 213-338 (352)
203 PRK04922 tolB translocation pr 98.5 1.7E-05 3.7E-10 91.0 22.3 93 301-411 272-369 (433)
204 PF10282 Lactonase: Lactonase, 98.4 0.00053 1.1E-08 76.5 33.0 85 323-420 246-332 (345)
205 KOG1009 Chromatin assembly com 98.4 5.9E-05 1.3E-09 83.5 24.3 93 302-411 262-373 (434)
206 PF08662 eIF2A: Eukaryotic tra 98.4 6.8E-06 1.5E-10 84.5 16.2 50 300-352 124-179 (194)
207 KOG0649 WD40 repeat protein [G 98.4 1.7E-05 3.7E-10 82.9 18.6 106 297-418 132-243 (325)
208 PF00400 WD40: WD domain, G-be 98.4 5.4E-07 1.2E-11 67.7 5.8 39 311-350 1-39 (39)
209 PRK05137 tolB translocation pr 98.4 8.2E-05 1.8E-09 85.4 25.7 91 301-409 270-365 (435)
210 PRK03629 tolB translocation pr 98.4 5.1E-05 1.1E-09 87.2 23.7 94 302-411 268-364 (429)
211 PRK00178 tolB translocation pr 98.4 0.0002 4.3E-09 81.8 28.4 94 302-414 312-408 (430)
212 KOG1188 WD40 repeat protein [G 98.4 2.5E-06 5.5E-11 92.4 11.7 105 296-414 89-200 (376)
213 PRK02889 tolB translocation pr 98.3 6.8E-05 1.5E-09 86.0 23.6 94 302-412 265-362 (427)
214 KOG0322 G-protein beta subunit 98.3 7.1E-06 1.5E-10 86.5 13.9 58 293-351 265-322 (323)
215 KOG2445 Nuclear pore complex c 98.3 7.1E-06 1.5E-10 88.0 14.0 115 293-415 27-149 (361)
216 KOG1538 Uncharacterized conser 98.3 1.5E-06 3.3E-11 99.9 8.8 143 138-407 14-159 (1081)
217 KOG0644 Uncharacterized conser 98.3 5.5E-06 1.2E-10 97.6 12.6 99 296-411 370-469 (1113)
218 PRK04792 tolB translocation pr 98.3 0.00053 1.1E-08 79.4 28.7 51 117-167 242-298 (448)
219 KOG2139 WD40 repeat protein [G 98.2 7E-05 1.5E-09 82.0 19.1 103 299-419 216-318 (445)
220 PF02239 Cytochrom_D1: Cytochr 98.2 0.00035 7.6E-09 79.0 25.5 180 117-415 16-207 (369)
221 KOG1310 WD40 repeat protein [G 98.2 2.2E-06 4.8E-11 97.1 7.6 81 315-411 44-126 (758)
222 KOG0644 Uncharacterized conser 98.2 4E-07 8.8E-12 106.9 1.7 96 294-410 205-300 (1113)
223 PRK01029 tolB translocation pr 98.2 0.00064 1.4E-08 78.3 27.5 92 303-411 307-404 (428)
224 KOG0642 Cell-cycle nuclear pro 98.2 1.3E-05 2.8E-10 91.6 12.8 57 296-353 506-562 (577)
225 KOG1587 Cytoplasmic dynein int 98.2 5.2E-05 1.1E-09 89.2 18.2 104 293-412 362-474 (555)
226 PF02239 Cytochrom_D1: Cytochr 98.1 2.1E-05 4.6E-10 88.8 13.5 106 297-420 12-118 (369)
227 TIGR02800 propeller_TolB tol-p 98.1 0.0003 6.5E-09 79.4 22.6 93 301-411 258-355 (417)
228 KOG2321 WD40 repeat protein [G 98.1 0.00019 4.1E-09 82.4 20.3 192 117-421 155-354 (703)
229 KOG0649 WD40 repeat protein [G 98.0 4.7E-05 1E-09 79.7 11.9 80 323-419 116-195 (325)
230 KOG2919 Guanine nucleotide-bin 98.0 0.00035 7.7E-09 75.7 18.0 96 297-411 269-368 (406)
231 PRK04792 tolB translocation pr 98.0 0.00089 1.9E-08 77.5 22.8 95 302-414 287-384 (448)
232 PRK04043 tolB translocation pr 97.9 0.011 2.3E-07 68.2 30.6 50 117-166 213-268 (419)
233 PRK00178 tolB translocation pr 97.9 0.0017 3.6E-08 74.2 24.1 92 302-411 268-364 (430)
234 KOG3881 Uncharacterized conser 97.9 0.00056 1.2E-08 75.7 17.8 81 297-395 265-346 (412)
235 KOG0974 WD-repeat protein WDR6 97.9 5E-05 1.1E-09 91.8 10.2 96 297-410 151-246 (967)
236 PF10282 Lactonase: Lactonase, 97.8 0.05 1.1E-06 60.7 31.5 108 301-418 166-283 (345)
237 KOG1538 Uncharacterized conser 97.8 0.0015 3.3E-08 76.1 19.1 260 16-410 22-293 (1081)
238 PF00400 WD40: WD domain, G-be 97.7 0.00011 2.3E-09 55.1 6.7 37 370-408 3-39 (39)
239 KOG2139 WD40 repeat protein [G 97.7 8.7E-05 1.9E-09 81.3 8.5 78 317-411 192-269 (445)
240 PLN02919 haloacid dehalogenase 97.7 0.033 7.1E-07 71.2 32.6 74 325-413 807-891 (1057)
241 PF13360 PQQ_2: PQQ-like domai 97.7 0.068 1.5E-06 55.2 29.0 94 297-412 128-232 (238)
242 KOG1064 RAVE (regulator of V-A 97.6 0.00017 3.6E-09 91.2 9.6 91 299-418 2313-2406(2439)
243 KOG4227 WD40 repeat protein [G 97.6 0.008 1.7E-07 66.6 21.1 105 303-411 268-388 (609)
244 KOG4547 WD40 repeat-containing 97.6 0.0052 1.1E-07 71.2 20.4 99 294-411 117-221 (541)
245 KOG0974 WD-repeat protein WDR6 97.6 0.00092 2E-08 81.3 14.9 100 296-414 192-292 (967)
246 COG4946 Uncharacterized protei 97.6 0.013 2.8E-07 66.6 22.7 75 118-204 383-462 (668)
247 KOG4227 WD40 repeat protein [G 97.6 0.00046 1E-08 76.1 11.2 105 294-413 71-182 (609)
248 PRK01029 tolB translocation pr 97.6 0.0057 1.2E-07 70.5 20.9 75 323-411 282-360 (428)
249 COG2706 3-carboxymuconate cycl 97.6 0.074 1.6E-06 59.0 28.1 85 322-419 244-330 (346)
250 KOG2321 WD40 repeat protein [G 97.6 0.00057 1.2E-08 78.6 12.2 114 292-421 188-313 (703)
251 KOG2315 Predicted translation 97.6 0.036 7.9E-07 64.2 26.4 120 300-456 250-373 (566)
252 KOG1240 Protein kinase contain 97.5 0.011 2.4E-07 73.4 23.2 116 297-412 1213-1336(1431)
253 TIGR03300 assembly_YfgL outer 97.5 0.06 1.3E-06 60.4 27.2 102 296-419 246-347 (377)
254 KOG3914 WD repeat protein WDR4 97.5 0.00025 5.3E-09 78.7 7.8 103 298-418 129-231 (390)
255 KOG1912 WD40 repeat protein [G 97.5 0.001 2.2E-08 78.7 13.0 102 295-412 441-553 (1062)
256 KOG1524 WD40 repeat-containing 97.5 0.00019 4.1E-09 81.8 6.6 115 291-409 75-215 (737)
257 KOG1310 WD40 repeat protein [G 97.4 0.00043 9.3E-09 79.2 8.6 111 294-411 65-179 (758)
258 KOG4497 Uncharacterized conser 97.4 0.0023 5E-08 69.7 13.5 92 299-408 112-238 (447)
259 KOG1240 Protein kinase contain 97.4 0.00081 1.8E-08 82.9 10.6 96 306-412 1034-1130(1431)
260 KOG1272 WD40-repeat-containing 97.4 0.00017 3.7E-09 81.0 4.6 107 294-419 224-332 (545)
261 KOG2315 Predicted translation 97.3 0.005 1.1E-07 71.0 16.2 51 299-352 334-390 (566)
262 KOG4547 WD40 repeat-containing 97.3 0.0016 3.4E-08 75.3 11.9 111 295-424 74-186 (541)
263 smart00320 WD40 WD40 repeats. 97.3 0.00059 1.3E-08 47.4 5.5 39 311-350 2-40 (40)
264 KOG1409 Uncharacterized conser 97.3 0.008 1.7E-07 66.0 16.4 99 298-412 172-272 (404)
265 KOG4497 Uncharacterized conser 97.3 0.0013 2.8E-08 71.6 10.2 87 298-402 68-155 (447)
266 TIGR03300 assembly_YfgL outer 97.3 0.16 3.5E-06 56.9 27.6 94 295-408 283-377 (377)
267 KOG1523 Actin-related protein 97.2 0.0053 1.2E-07 66.8 14.2 99 298-409 74-175 (361)
268 KOG1334 WD40 repeat protein [G 97.2 0.0043 9.3E-08 70.5 14.0 111 296-412 299-426 (559)
269 COG4946 Uncharacterized protei 97.2 0.0034 7.5E-08 71.0 12.6 106 296-420 376-486 (668)
270 KOG1275 PAB-dependent poly(A) 97.1 0.0057 1.2E-07 73.8 14.0 183 116-409 156-341 (1118)
271 PF11768 DUF3312: Protein of u 97.1 0.0045 9.7E-08 72.1 12.1 91 303-412 238-331 (545)
272 TIGR02658 TTQ_MADH_Hv methylam 97.0 0.0087 1.9E-07 67.3 13.5 96 301-412 27-138 (352)
273 PF07433 DUF1513: Protein of u 97.0 0.26 5.6E-06 54.4 24.2 102 302-412 139-249 (305)
274 PF04762 IKI3: IKI3 family; I 97.0 2.1 4.5E-05 54.4 38.3 100 300-414 236-337 (928)
275 KOG4415 Uncharacterized conser 96.8 0.00053 1.1E-08 69.1 1.9 31 635-665 28-59 (247)
276 KOG0280 Uncharacterized conser 96.8 0.0067 1.5E-07 65.4 9.8 103 298-415 140-246 (339)
277 KOG2314 Translation initiation 96.7 0.23 5E-06 57.8 21.9 113 16-167 220-338 (698)
278 COG5354 Uncharacterized protei 96.7 0.35 7.7E-06 55.8 23.2 91 300-410 254-348 (561)
279 COG2706 3-carboxymuconate cycl 96.7 0.28 6.1E-06 54.5 21.5 96 324-432 147-244 (346)
280 PF08450 SGL: SMP-30/Gluconola 96.6 0.67 1.4E-05 48.8 23.7 99 301-410 115-213 (246)
281 PF15492 Nbas_N: Neuroblastoma 96.5 0.47 1E-05 51.5 21.5 100 320-419 146-268 (282)
282 KOG1523 Actin-related protein 96.4 0.018 3.8E-07 62.9 9.8 100 298-411 29-131 (361)
283 KOG1275 PAB-dependent poly(A) 96.3 0.05 1.1E-06 66.1 14.0 52 117-168 197-259 (1118)
284 PLN02919 haloacid dehalogenase 96.3 0.76 1.7E-05 59.1 25.5 87 324-411 742-834 (1057)
285 KOG4532 WD40-like repeat conta 96.1 0.38 8.3E-06 51.8 18.0 97 293-401 217-323 (344)
286 KOG4190 Uncharacterized conser 96.1 0.017 3.7E-07 66.3 8.6 126 293-421 749-917 (1034)
287 KOG1354 Serine/threonine prote 96.1 0.014 3E-07 64.2 7.0 108 292-412 227-361 (433)
288 KOG1334 WD40 repeat protein [G 96.0 0.033 7.2E-07 63.6 9.9 58 295-353 410-467 (559)
289 PF03178 CPSF_A: CPSF A subuni 95.8 0.47 1E-05 52.3 18.0 94 301-411 107-203 (321)
290 KOG1645 RING-finger-containing 95.8 0.023 5E-07 63.6 7.4 95 303-415 175-271 (463)
291 KOG4714 Nucleoporin [Nuclear s 95.7 0.023 4.9E-07 60.6 6.5 113 294-408 195-316 (319)
292 KOG1064 RAVE (regulator of V-A 95.6 0.092 2E-06 67.8 12.5 121 294-419 2223-2375(2439)
293 KOG2695 WD40 repeat protein [G 95.6 0.047 1E-06 60.3 8.6 115 298-427 231-349 (425)
294 PF13360 PQQ_2: PQQ-like domai 95.4 2 4.4E-05 44.2 19.9 55 117-171 46-102 (238)
295 KOG4532 WD40-like repeat conta 95.3 0.22 4.9E-06 53.5 12.5 100 300-415 139-238 (344)
296 KOG0309 Conserved WD40 repeat- 95.3 0.11 2.4E-06 61.9 11.1 103 294-413 130-235 (1081)
297 KOG4190 Uncharacterized conser 95.3 0.015 3.3E-07 66.7 4.0 85 313-409 727-811 (1034)
298 KOG4640 Anaphase-promoting com 95.3 0.064 1.4E-06 63.1 9.1 77 323-417 22-99 (665)
299 PRK04043 tolB translocation pr 95.2 0.24 5.2E-06 57.2 13.4 99 300-416 212-313 (419)
300 COG3386 Gluconolactonase [Carb 95.2 1.8 4E-05 48.0 19.7 100 301-410 143-243 (307)
301 PRK11138 outer membrane biogen 95.1 2.5 5.5E-05 47.9 21.5 57 117-173 130-188 (394)
302 KOG0280 Uncharacterized conser 95.1 0.069 1.5E-06 57.9 8.1 103 295-414 182-288 (339)
303 KOG1645 RING-finger-containing 95.1 1 2.2E-05 51.0 17.0 51 116-166 215-269 (463)
304 PF04762 IKI3: IKI3 family; I 95.0 12 0.00025 47.9 28.5 76 320-410 303-379 (928)
305 PF03178 CPSF_A: CPSF A subuni 94.9 7.4 0.00016 42.8 28.2 50 117-166 62-118 (321)
306 smart00320 WD40 WD40 repeats. 94.7 0.05 1.1E-06 37.3 3.9 28 381-408 13-40 (40)
307 KOG1354 Serine/threonine prote 94.6 0.18 4E-06 55.7 9.9 79 322-414 26-120 (433)
308 KOG1912 WD40 repeat protein [G 94.6 1.7 3.6E-05 52.8 18.1 119 18-174 26-154 (1062)
309 PF07433 DUF1513: Protein of u 94.6 9.5 0.00021 42.4 26.5 71 320-412 215-285 (305)
310 KOG2695 WD40 repeat protein [G 94.3 0.11 2.4E-06 57.4 7.3 104 296-412 269-378 (425)
311 KOG4640 Anaphase-promoting com 94.1 0.14 3.1E-06 60.3 8.0 59 294-354 35-94 (665)
312 COG0823 TolB Periplasmic compo 94.0 1.3 2.8E-05 51.5 15.7 51 117-167 218-274 (425)
313 PRK11138 outer membrane biogen 93.9 7.3 0.00016 44.2 21.4 90 299-409 302-393 (394)
314 COG5354 Uncharacterized protei 93.9 0.11 2.3E-06 59.9 6.4 95 305-419 16-125 (561)
315 PF15492 Nbas_N: Neuroblastoma 93.8 12 0.00027 40.9 23.4 33 320-353 228-260 (282)
316 KOG4714 Nucleoporin [Nuclear s 93.6 0.068 1.5E-06 57.2 3.9 94 301-411 159-255 (319)
317 PF12894 Apc4_WD40: Anaphase-p 93.5 0.2 4.3E-06 40.2 5.5 31 380-410 11-41 (47)
318 KOG2041 WD40 repeat protein [G 93.4 0.13 2.8E-06 61.2 6.1 101 294-409 29-144 (1189)
319 KOG2066 Vacuolar assembly/sort 93.4 0.3 6.4E-06 59.1 9.1 91 294-411 52-147 (846)
320 PF08450 SGL: SMP-30/Gluconola 93.3 1.1 2.5E-05 47.1 12.7 97 302-414 61-168 (246)
321 KOG3621 WD40 repeat-containing 93.3 0.2 4.4E-06 59.7 7.6 102 297-411 51-155 (726)
322 cd00216 PQQ_DH Dehydrogenases 93.0 11 0.00024 44.4 21.5 57 117-173 71-138 (488)
323 PF06433 Me-amine-dh_H: Methyl 92.4 13 0.00028 42.0 19.6 105 298-419 202-329 (342)
324 KOG1920 IkappaB kinase complex 92.4 14 0.00031 47.2 21.7 97 301-412 222-324 (1265)
325 KOG2314 Translation initiation 92.3 0.33 7.1E-06 56.6 7.3 95 323-443 212-317 (698)
326 COG5170 CDC55 Serine/threonine 92.2 0.3 6.6E-06 53.4 6.5 105 293-412 236-369 (460)
327 PRK02888 nitrous-oxide reducta 92.1 1.3 2.9E-05 53.2 12.1 113 297-413 211-354 (635)
328 PF11768 DUF3312: Protein of u 92.0 0.5 1.1E-05 55.6 8.5 59 293-354 273-331 (545)
329 PF12894 Apc4_WD40: Anaphase-p 90.8 0.59 1.3E-05 37.5 5.3 29 322-351 12-40 (47)
330 KOG1832 HIV-1 Vpr-binding prot 90.5 0.15 3.1E-06 62.0 2.2 103 293-414 1115-1218(1516)
331 KOG3617 WD40 and TPR repeat-co 90.1 0.39 8.3E-06 58.3 5.2 98 299-415 39-136 (1416)
332 PF06433 Me-amine-dh_H: Methyl 89.9 0.64 1.4E-05 52.0 6.5 57 117-173 269-330 (342)
333 KOG2079 Vacuolar assembly/sort 89.9 0.67 1.4E-05 57.8 7.1 99 296-410 104-203 (1206)
334 KOG3914 WD repeat protein WDR4 89.8 0.32 6.9E-06 54.7 4.0 60 293-354 165-225 (390)
335 PF04053 Coatomer_WDAD: Coatom 89.8 15 0.00034 42.9 18.0 58 333-411 117-174 (443)
336 PF00930 DPPIV_N: Dipeptidyl p 89.3 1 2.2E-05 50.5 7.7 103 300-412 22-133 (353)
337 KOG0882 Cyclophilin-related pe 89.1 1.5 3.2E-05 50.4 8.5 114 298-414 119-235 (558)
338 PF00780 CNH: CNH domain; Int 88.7 9.8 0.00021 40.5 14.4 43 131-173 223-265 (275)
339 PF08553 VID27: VID27 cytoplas 88.4 5.7 0.00012 49.4 13.6 59 292-352 589-647 (794)
340 PF00780 CNH: CNH domain; Int 88.2 14 0.0003 39.4 15.1 53 115-167 112-169 (275)
341 COG0823 TolB Periplasmic compo 87.9 1.7 3.8E-05 50.3 8.5 96 301-416 218-318 (425)
342 KOG0309 Conserved WD40 repeat- 87.6 1.4 3E-05 53.2 7.3 108 302-425 92-204 (1081)
343 PF10313 DUF2415: Uncharacteri 87.5 1.2 2.7E-05 35.1 4.8 32 322-354 1-35 (43)
344 PF14783 BBS2_Mid: Ciliary BBS 87.2 5.7 0.00012 37.8 9.9 65 324-409 2-70 (111)
345 PF04841 Vps16_N: Vps16, N-ter 87.2 64 0.0014 37.3 24.8 47 116-163 60-109 (410)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 55 0.0012 39.2 20.5 53 300-354 440-492 (527)
347 KOG2395 Protein involved in va 86.8 32 0.00069 40.8 17.4 59 292-352 442-500 (644)
348 KOG2114 Vacuolar assembly/sort 85.0 4.1 8.9E-05 50.1 9.6 109 294-409 38-154 (933)
349 KOG2041 WD40 repeat protein [G 84.0 5.3 0.00012 48.2 9.7 96 295-410 87-186 (1189)
350 KOG1920 IkappaB kinase complex 83.7 17 0.00036 46.6 14.3 67 322-406 69-135 (1265)
351 COG5170 CDC55 Serine/threonine 83.4 2 4.3E-05 47.3 5.6 85 322-411 27-118 (460)
352 PF00930 DPPIV_N: Dipeptidyl p 82.3 91 0.002 34.9 20.3 54 117-171 23-78 (353)
353 cd00216 PQQ_DH Dehydrogenases 82.3 1.1E+02 0.0024 36.0 22.8 59 116-174 119-194 (488)
354 PF10168 Nup88: Nuclear pore c 82.0 24 0.00053 43.8 14.9 92 321-415 84-184 (717)
355 COG3391 Uncharacterized conser 82.0 21 0.00045 40.7 13.6 96 298-411 93-191 (381)
356 KOG2079 Vacuolar assembly/sort 82.0 1.8 3.9E-05 54.2 5.2 78 327-421 93-171 (1206)
357 PF14655 RAB3GAP2_N: Rab3 GTPa 81.9 6.9 0.00015 45.4 9.6 91 313-419 299-407 (415)
358 PRK13616 lipoprotein LpqB; Pro 81.4 8.4 0.00018 46.7 10.5 100 301-418 379-485 (591)
359 PF10313 DUF2415: Uncharacteri 80.5 4.7 0.0001 31.9 5.3 29 383-411 3-34 (43)
360 PRK02888 nitrous-oxide reducta 79.7 15 0.00033 44.5 11.7 106 300-411 295-405 (635)
361 PF08596 Lgl_C: Lethal giant l 79.5 13 0.00028 42.8 10.8 84 312-411 77-174 (395)
362 PF08728 CRT10: CRT10; InterP 78.8 81 0.0017 39.2 17.5 74 322-409 164-245 (717)
363 PRK13616 lipoprotein LpqB; Pro 78.3 13 0.00028 45.2 10.7 104 300-417 429-532 (591)
364 PF02897 Peptidase_S9_N: Proly 77.9 13 0.00029 42.2 10.3 72 323-412 125-212 (414)
365 PF14783 BBS2_Mid: Ciliary BBS 76.4 57 0.0012 31.1 12.2 88 294-405 18-109 (111)
366 PF14583 Pectate_lyase22: Olig 76.2 1.5E+02 0.0033 34.2 17.8 41 115-155 166-209 (386)
367 KOG2066 Vacuolar assembly/sort 75.7 63 0.0014 40.1 15.2 29 117-145 93-121 (846)
368 KOG2444 WD40 repeat protein [G 75.6 6.3 0.00014 41.9 6.2 105 294-414 73-181 (238)
369 PF14781 BBS2_N: Ciliary BBSom 75.4 16 0.00035 35.9 8.5 45 126-170 37-88 (136)
370 PF02897 Peptidase_S9_N: Proly 74.8 22 0.00048 40.4 11.1 99 298-411 147-261 (414)
371 PF08553 VID27: VID27 cytoplas 74.4 23 0.00049 44.3 11.5 96 296-408 499-604 (794)
372 KOG1409 Uncharacterized conser 73.5 20 0.00044 40.3 9.6 114 309-426 102-244 (404)
373 PF05694 SBP56: 56kDa selenium 73.3 34 0.00073 39.9 11.7 109 296-414 217-346 (461)
374 KOG4649 PQQ (pyrrolo-quinoline 72.7 92 0.002 34.2 13.9 57 116-172 72-132 (354)
375 PF07676 PD40: WD40-like Beta 71.1 12 0.00026 27.9 5.3 30 320-349 7-38 (39)
376 KOG1832 HIV-1 Vpr-binding prot 71.0 5.1 0.00011 49.5 4.7 87 312-415 1092-1180(1516)
377 KOG3617 WD40 and TPR repeat-co 70.7 8.1 0.00018 47.6 6.3 56 296-352 76-131 (1416)
378 PF12234 Rav1p_C: RAVE protein 70.3 44 0.00096 40.8 12.4 102 300-410 50-156 (631)
379 KOG4460 Nuclear pore complex, 69.5 38 0.00083 40.1 11.0 85 322-412 104-200 (741)
380 COG3391 Uncharacterized conser 69.0 74 0.0016 36.3 13.5 94 299-411 138-240 (381)
381 PF07676 PD40: WD40-like Beta 68.8 10 0.00022 28.3 4.5 26 382-407 10-38 (39)
382 PF12657 TFIIIC_delta: Transcr 61.3 54 0.0012 33.1 9.4 31 382-412 87-123 (173)
383 smart00036 CNH Domain found in 60.2 1.6E+02 0.0034 32.6 13.6 43 131-173 238-280 (302)
384 PF04053 Coatomer_WDAD: Coatom 59.1 19 0.00042 42.1 6.5 54 295-352 120-173 (443)
385 KOG1008 Uncharacterized conser 57.2 3.8 8.3E-05 49.0 0.3 92 299-409 127-224 (783)
386 KOG1008 Uncharacterized conser 56.4 3.9 8.5E-05 48.9 0.2 103 297-410 76-184 (783)
387 COG3490 Uncharacterized protei 56.0 1.5E+02 0.0031 33.2 11.8 54 119-173 51-109 (366)
388 KOG4649 PQQ (pyrrolo-quinoline 55.4 68 0.0015 35.2 9.1 85 297-398 69-154 (354)
389 PF10647 Gmad1: Lipoprotein Lp 54.8 1.1E+02 0.0023 33.0 10.8 75 323-411 67-145 (253)
390 TIGR03074 PQQ_membr_DH membran 54.0 5.6E+02 0.012 32.4 22.9 57 117-173 204-288 (764)
391 PF06977 SdiA-regulated: SdiA- 52.7 1.6E+02 0.0035 31.9 11.7 81 317-414 17-98 (248)
392 PF14870 PSII_BNR: Photosynthe 52.1 76 0.0016 35.4 9.3 69 322-408 145-213 (302)
393 TIGR02276 beta_rpt_yvtn 40-res 50.0 95 0.0021 22.9 7.0 24 331-354 1-24 (42)
394 PF05787 DUF839: Bacterial pro 49.8 33 0.00071 41.1 6.5 70 326-398 440-519 (524)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.8 5.3E+02 0.012 30.9 23.2 56 117-172 79-147 (527)
396 KOG1897 Damage-specific DNA bi 49.5 7.1E+02 0.015 32.3 22.6 95 301-410 848-942 (1096)
397 PF05096 Glu_cyclase_2: Glutam 49.0 4E+02 0.0087 29.3 20.9 56 117-172 68-127 (264)
398 PF12234 Rav1p_C: RAVE protein 48.9 53 0.0012 40.2 8.0 45 117-161 51-102 (631)
399 KOG2395 Protein involved in va 48.2 1.2E+02 0.0026 36.2 10.3 103 294-409 349-458 (644)
400 PF07569 Hira: TUP1-like enhan 47.6 33 0.00071 36.3 5.5 38 131-168 7-45 (219)
401 KOG3621 WD40 repeat-containing 46.4 33 0.00073 41.7 5.7 75 322-412 34-108 (726)
402 PF07569 Hira: TUP1-like enhan 45.4 1.1E+02 0.0023 32.4 8.9 73 329-411 18-96 (219)
403 PF05096 Glu_cyclase_2: Glutam 44.7 1.3E+02 0.0028 33.0 9.4 59 115-173 108-167 (264)
404 PF10214 Rrn6: RNA polymerase 43.2 1E+02 0.0023 38.6 9.7 79 322-412 146-234 (765)
405 PF01731 Arylesterase: Arylest 41.9 1.1E+02 0.0024 27.8 7.1 49 301-352 36-84 (86)
406 PF11715 Nup160: Nucleoporin N 41.8 1E+02 0.0023 36.6 9.1 36 383-418 217-256 (547)
407 KOG2114 Vacuolar assembly/sort 40.9 1.6E+02 0.0034 37.1 10.2 97 301-410 92-201 (933)
408 PF13570 PQQ_3: PQQ-like domai 40.6 52 0.0011 24.8 4.2 22 143-164 18-40 (40)
409 KOG0183 20S proteasome, regula 40.3 12 0.00025 39.4 0.7 21 521-541 6-28 (249)
410 PF14781 BBS2_N: Ciliary BBSom 38.8 3.6E+02 0.0078 26.8 10.5 56 116-171 72-133 (136)
411 COG3386 Gluconolactonase [Carb 38.7 2.4E+02 0.0052 31.5 10.7 99 301-416 47-155 (307)
412 PF06977 SdiA-regulated: SdiA- 37.9 4.7E+02 0.01 28.3 12.5 108 294-411 37-148 (248)
413 smart00036 CNH Domain found in 37.2 3.3E+02 0.0072 30.0 11.5 38 19-58 14-52 (302)
414 PF03088 Str_synth: Strictosid 36.8 1.5E+02 0.0033 27.1 7.3 16 383-398 59-74 (89)
415 PF01011 PQQ: PQQ enzyme repea 36.4 66 0.0014 24.1 4.1 28 148-175 3-30 (38)
416 PF10647 Gmad1: Lipoprotein Lp 36.0 1.9E+02 0.0041 31.0 9.2 67 323-408 25-93 (253)
417 PF14870 PSII_BNR: Photosynthe 35.9 2.4E+02 0.0052 31.5 10.1 90 299-401 163-253 (302)
418 COG3211 PhoX Predicted phospha 35.7 84 0.0018 37.9 6.7 64 325-398 503-571 (616)
419 TIGR03606 non_repeat_PQQ dehyd 33.1 1.5E+02 0.0033 35.0 8.3 20 324-343 148-167 (454)
420 PF04841 Vps16_N: Vps16, N-ter 32.7 2.6E+02 0.0057 32.3 10.2 29 381-410 81-109 (410)
421 KOG1916 Nuclear protein, conta 32.4 15 0.00033 45.7 0.1 53 298-352 202-265 (1283)
422 smart00564 PQQ beta-propeller 32.2 1.1E+02 0.0023 21.6 4.5 26 146-171 7-32 (33)
423 TIGR02604 Piru_Ver_Nterm putat 31.9 2.1E+02 0.0045 32.4 9.1 66 321-401 123-204 (367)
424 PRK10115 protease 2; Provision 31.4 1.7E+02 0.0037 36.3 8.9 62 322-401 127-192 (686)
425 PF14761 HPS3_N: Hermansky-Pud 31.3 1.5E+02 0.0033 31.5 7.2 58 327-401 23-80 (215)
426 KOG2377 Uncharacterized conser 30.9 96 0.0021 36.4 6.0 80 320-414 65-144 (657)
427 TIGR03118 PEPCTERM_chp_1 conse 30.8 6.5E+02 0.014 28.5 12.1 54 298-354 219-281 (336)
428 COG5422 ROM1 RhoGEF, Guanine n 30.0 2.8E+02 0.0061 35.2 9.9 34 142-175 1104-1137(1175)
429 KOG2280 Vacuolar assembly/sort 28.2 7.3E+02 0.016 31.2 12.8 47 117-164 64-113 (829)
430 TIGR02604 Piru_Ver_Nterm putat 26.9 5.4E+02 0.012 29.0 11.3 61 323-396 15-86 (367)
431 PF10214 Rrn6: RNA polymerase 26.8 1.4E+03 0.03 28.9 17.1 72 323-412 205-278 (765)
432 PF07995 GSDH: Glucose / Sorbo 26.4 2.8E+02 0.006 31.0 8.8 25 324-350 4-28 (331)
433 PF05694 SBP56: 56kDa selenium 26.1 1.2E+02 0.0026 35.6 5.7 48 115-162 220-276 (461)
434 PF12768 Rax2: Cortical protei 25.8 7.1E+02 0.015 27.5 11.5 55 300-354 15-74 (281)
435 KOG0882 Cyclophilin-related pe 25.7 35 0.00075 39.7 1.4 59 295-354 24-86 (558)
436 PF13449 Phytase-like: Esteras 25.2 9.7E+02 0.021 26.6 12.8 85 321-412 146-251 (326)
437 PF01731 Arylesterase: Arylest 25.1 1.1E+02 0.0024 27.8 4.2 29 383-411 56-85 (86)
438 PF07995 GSDH: Glucose / Sorbo 24.7 3.9E+02 0.0085 29.8 9.6 79 312-404 244-329 (331)
439 KOG1916 Nuclear protein, conta 24.2 39 0.00084 42.4 1.5 95 299-411 151-266 (1283)
440 PF03088 Str_synth: Strictosid 24.0 1.8E+02 0.0038 26.7 5.4 53 296-349 32-85 (89)
441 PF12341 DUF3639: Protein of u 23.9 1.4E+02 0.0031 21.4 3.7 24 383-408 4-27 (27)
442 PRK10115 protease 2; Provision 23.9 6.5E+02 0.014 31.3 12.0 98 298-410 150-255 (686)
443 COG3490 Uncharacterized protei 23.7 3.6E+02 0.0079 30.2 8.5 71 326-410 72-148 (366)
444 PF08596 Lgl_C: Lethal giant l 23.1 6.2E+02 0.013 29.3 10.9 91 323-419 3-122 (395)
445 TIGR02608 delta_60_rpt delta-6 23.0 1.8E+02 0.0038 24.3 4.7 32 383-414 3-39 (55)
446 PF14269 Arylsulfotran_2: Aryl 22.4 2.8E+02 0.006 30.8 7.6 71 324-410 146-220 (299)
447 PF14583 Pectate_lyase22: Olig 22.0 5E+02 0.011 30.1 9.6 94 306-415 15-115 (386)
448 TIGR03606 non_repeat_PQQ dehyd 21.9 8E+02 0.017 29.1 11.6 29 323-352 31-59 (454)
449 COG3204 Uncharacterized protei 21.8 4E+02 0.0086 29.9 8.4 84 319-418 83-166 (316)
450 COG2133 Glucose/sorbosone dehy 21.4 2.9E+02 0.0063 32.1 7.7 20 323-342 178-197 (399)
451 PF11715 Nup160: Nucleoporin N 21.2 1.6E+02 0.0036 35.0 6.0 31 323-354 216-250 (547)
452 KOG2444 WD40 repeat protein [G 21.1 1E+02 0.0022 33.1 3.7 56 297-353 120-178 (238)
453 PF01436 NHL: NHL repeat; Int 20.5 1.7E+02 0.0038 20.5 3.7 25 383-407 4-28 (28)
454 TIGR03032 conserved hypothetic 20.3 4.1E+02 0.0089 30.1 8.2 59 114-172 220-299 (335)
No 1
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=3e-56 Score=471.08 Aligned_cols=237 Identities=47% Similarity=0.703 Sum_probs=208.9
Q ss_pred CCceeeeeeEEEecCC-CCCCCcccCccccccC-CcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEccCccEEE
Q 003336 457 GPPVTLSVVSRIRNGN-NGWRGTVSGAAAAATG-RVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQ 534 (828)
Q Consensus 457 ~~p~~ls~v~~i~~~~-~~~~~~v~~~a~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~p~g~~~q 534 (828)
|+|++|++|+|||+++ +||.++|+++|++++| |.+.++||+|+.||+|.+.+..+..+...++++|||||+|+|+|||
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5799999999999999 8999999999999999 8899999999999999777766677776789999999999999999
Q ss_pred EeeeeccCCCcccCcCCCCCCCCCC-CCCCceEEEeeecccccccccccccccc-cccccCCCCCccC-cccccccccCC
Q 003336 535 YALRISTGLDVTMGVPGLGSAYDSV-PEDDPRLVVEAIQKWNICQKQARRERED-NIDIYGDNGTLDS-NKIYPEEVKDG 611 (828)
Q Consensus 535 y~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ve~~~~w~~~r~~~~~e~e~-~~~~~~~~~~~~~-~~~~~~~~~~~ 611 (828)
|+|+|+.+.+++.+.++.++++++. +|+++||+|||+|||||||+++|+||++ +..+++++...+. ++|+.+..+++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRKG 160 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhccccccccc
Confidence 9999999999988888899999888 6699999999999999999999999999 7777777665544 56777777776
Q ss_pred C-cccCCCcccccccCCCCcCccceeeeeeeeeecCC-CcccccCceeccccccccC-----ccccCC--CeeEEeeccc
Q 003336 612 N-FASTEANGVIEKTKVSPEDKHHLYISEAELQMHPP-RIPLWAKPQSMMIKDFKMG-----EENFLK--GEIEIERFPT 682 (828)
Q Consensus 612 ~-~~~~~~~~~~~~~~~~~~e~~~~~ls~aE~~~~~~-~~plW~~~~~~~~~~~~~~-----~~~~~~--~e~eie~~~~ 682 (828)
+ +++.+...+ .+.+++++|+++|||||||||||++ |+||||||||.|+++.... ..+..+ ||||||++|+
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~EIE~~~~ 239 (251)
T PF12490_consen 161 NSVNPSNDSYV-SKESDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIEIEKIPT 239 (251)
T ss_pred CCccccccccc-cccCCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCceeeccccc
Confidence 5 666654333 7778889999999999999999999 6999999999999885542 445566 9999999999
Q ss_pred cceecccCCccc
Q 003336 683 RMIEARSKDLVP 694 (828)
Q Consensus 683 ~~~~~~~~~l~p 694 (828)
|+||+|+|||||
T Consensus 240 ~~ve~r~k~l~p 251 (251)
T PF12490_consen 240 REVEIRRKDLLP 251 (251)
T ss_pred cceeeeccccCC
Confidence 999999999998
No 2
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-51 Score=461.73 Aligned_cols=600 Identities=28% Similarity=0.302 Sum_probs=413.8
Q ss_pred eeEEeeeecccCCCCCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEe
Q 003336 2 VLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 81 (828)
Q Consensus 2 v~w~~fd~l~~~~~~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~ 81 (828)
|+|++||+ ..+..+.||+++|.+||||||+++...+.+.++.+++++.|.+|++.|..++ ..+.|+.++|++|+|.
T Consensus 41 vlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg-~~~gf~ss~avpavv~ 116 (788)
T KOG2109|consen 41 VLWIKFDP---KPEVLEEVLLLNREEGFQVVDETDSPTVHKEVSISDDLLDFSSMDKSPLSSG-PDSGFESSDAVPAVVR 116 (788)
T ss_pred ccccccCC---chhHHHHHHHHhhccCceEEeeccCCccceeeeecCCcceecccCCCCccCC-CCCccccCCceeeecc
Confidence 78999994 4455799999999999999999999999999999999999999999998764 4467999999999998
Q ss_pred CCCCccCccccCCcccccCCCCCCCCCCCC-CCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEE
Q 003336 82 DGSRSCGTKVQDGLATACNGTSANYHDLGN-GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCF 160 (828)
Q Consensus 82 ~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~-~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~Iw 160 (828)
.... +-....+ ++|. ....+....++|+++..+++.|+|+ +|+||
T Consensus 117 ~t~S-~p~I~~S--------------~~Gse~d~t~an~~v~dl~S~~yah~l~fR-------------------qi~Cf 162 (788)
T KOG2109|consen 117 TTTS-PPTIPPS--------------QTGSEQDSTQANEMVVDLMSLDYAHALPFR-------------------QIHCF 162 (788)
T ss_pred cccC-CCcCCCC--------------CCcceecccccccceeccccccchhccccc-------------------ccccc
Confidence 2110 0001111 1111 1223455788999999999999996 89999
Q ss_pred ECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCccccccccccc--ccCCCcceee
Q 003336 161 DAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG--FASNGSRVAH 238 (828)
Q Consensus 161 Dl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~--~~s~g~~Va~ 238 (828)
|+.+++..+.+.+.+.+.. +.+++|+|+++++||+||+...+..+.. +.+++-++.++ ++..+..++.
T Consensus 163 Da~tle~d~~~~~n~~p~l-----~l~VGYGplaVg~rWaaya~~~a~~vss-----~~Vt~~~~VspttSs~~~~~va~ 232 (788)
T KOG2109|consen 163 DAPTLEIDSMNTINTKPRL-----LLSVGYGPLAVGRRWAAYAQTLANQVSS-----HLVTMGMSVSPTTSSQITAEVAE 232 (788)
T ss_pred cCcccCCchhhcccccccc-----ceeeccccccceeeeeeeccCcchhhhh-----ccccccccccCCCCCchhHHHHH
Confidence 9999998888877765443 2358899999999999999765543322 11111122222 3345677899
Q ss_pred eecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCe--EEEEECCCCcEEEE
Q 003336 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM--VIVRDIVSKNVIAQ 316 (828)
Q Consensus 239 ~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~--V~IwDl~s~~~i~~ 316 (828)
||++++|++|.||.++||.+|+.+++||....+.+.+.-...+..-+ .|.+.++.+.+ -.|+ +.+-|+.+.+.+.+
T Consensus 233 ~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~-vGrvg~vsaes-V~g~~~vivkdf~S~a~i~Q 310 (788)
T KOG2109|consen 233 WAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVL-VGRVGPVSAES-VLGNNLVIVKDFDSFADIRQ 310 (788)
T ss_pred hhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCcee-cccccccccee-ecccceEEeecccchhhhhh
Confidence 99999999999999999999999999999977665332111111100 12221111111 2344 88999999999999
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEE
Q 003336 317 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (828)
Q Consensus 317 f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 396 (828)
|++|+.+|++|||+++|.+|++++..|+.|++|.+++..... ..+. .-+.--.|+++.+.|++|||+.+.+|++
T Consensus 311 fkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~-~~~~-----qs~~~s~ra~t~aviqdicfs~~s~~r~ 384 (788)
T KOG2109|consen 311 FKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTV-NVSD-----QSLVVSPRANTAAVIQDICFSEVSTIRT 384 (788)
T ss_pred eeeecCcccccccccCceEEEEEeeccceeeeEEeccccccc-cccc-----cccccchhcchHHHHHHHhhhhhcceEe
Confidence 999999999999999999999999999999999998752211 1110 0111115899999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCCceeeccCCCCCCcccCCCCccceecCCCCCCCCCCcccccCCCCceeeeeeEEEecCCCCCC
Q 003336 397 ISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWR 476 (828)
Q Consensus 397 s~S~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~~~~~~q~~~~~~~~p~~ls~v~~i~~~~~~~~ 476 (828)
.+|.+|+- +.+. .....++++...+-.-+.-.+.+....|..+++++--+.-
T Consensus 385 ~gsc~Ge~-----------P~ls---------------~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~-- 436 (788)
T KOG2109|consen 385 AGSCEGEP-----------PALS---------------LTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSY-- 436 (788)
T ss_pred ecccCCCC-----------cccc---------------cccccchhhchhhhccccccCcccceeeeecccccccccc--
Confidence 99977654 1111 0111222222211111111122234445555555543310
Q ss_pred CcccCccccccCCcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEccCc-cEEEEeeeeccCCCcccC-cCCCCC
Q 003336 477 GTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG-CMIQYALRISTGLDVTMG-VPGLGS 554 (828)
Q Consensus 477 ~~v~~~a~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~p~g-~~~qy~l~~~~~~~~~~~-~~~~~~ 554 (828)
+|++-+++...++++.+..||-...-. .......+..|||+.|+| +|+||.|.++-+....+. ...++.
T Consensus 437 -----~asSv~s~s~~pd~ks~gv~~gsv~k~----~q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~ 507 (788)
T KOG2109|consen 437 -----TASSVFSRSVKPDSKSVGVGSGSVTKA----NQGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLV 507 (788)
T ss_pred -----ccceeeccccccchhhccceeeecccc----CccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccce
Confidence 222233444444445555555431110 012345799999999999 999999999988777664 344555
Q ss_pred CCCCCCCCC-ceEEEeeecccccccccccccccccccccCCCCCccCcccccccccCCCcccCCCcccccccCCCCcCcc
Q 003336 555 AYDSVPEDD-PRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKH 633 (828)
Q Consensus 555 ~~~~~~~~~-~~~~ve~~~~w~~~r~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 633 (828)
-.+...+++ .+|.|+|++.|++|++..|+||+++ .++ .-|.+...++++..... ...+...+.-+.+
T Consensus 508 lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r---G~T-----saKv~~~afs~dsrw~A----~~t~~~TthVfk~ 575 (788)
T KOG2109|consen 508 LSADANENEFNIFLVMPHATWSSLAAVQHLYKLNR---GST-----SAKVVSTAFSEDSRWLA----ITTNHATTHVFKV 575 (788)
T ss_pred ecccccccccceEEeecccccHHHhhhhhhhhccC---CCc-----cceeeeeEeecchhhhh----hhhcCCceeeeee
Confidence 556667888 9999999999999999999999997 222 22666666665442111 1134455567899
Q ss_pred ceeeeeeeeeecCCCcccccCc---eeccccccccC--ccccCCCeeEEeeccccceecccCCccccccccCCccccccc
Q 003336 634 HLYISEAELQMHPPRIPLWAKP---QSMMIKDFKMG--EENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQAR 708 (828)
Q Consensus 634 ~~~ls~aE~~~~~~~~plW~~~---~~~~~~~~~~~--~~~~~~~e~eie~~~~~~~~~~~~~l~pv~~~~~~~~~~~~~ 708 (828)
|.|+-++|+++|.. +|||+|. |-|.....+.+ .....++|.||+++.++.+|.|+||||||++ .+|+|-+-.|
T Consensus 576 hpYgg~aeqrth~~-lp~vnk~srFhrsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rsr~~~ 653 (788)
T KOG2109|consen 576 HPYGGKAEQRTHGD-LPFVNKESRFHRSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRSRVGP 653 (788)
T ss_pred ccccccccceecCC-chhccchhhhccccCCCccccccccCCCCccceecccccccccccccccCCccc-ccCccccccC
Confidence 99999999999999 9999999 33443332222 2234566999999999999999999999999 6776655433
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=298.71 Aligned_cols=230 Identities=27% Similarity=0.492 Sum_probs=200.8
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
...+|.+|..+|+++|.+++.++ ..+...+.+..++||- +..|||+|+..
T Consensus 16 d~~~lsvGs~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLF--------------SSSLvaiV~~~------------- 65 (391)
T KOG2110|consen 16 DSTLLSVGSKDGYKIFSCSPFEK---CFSKDTEGVSIVEMLF--------------SSSLVAIVSIK------------- 65 (391)
T ss_pred ceeEEEccCCCceeEEecCchHH---hhcccCCCeEEEEeec--------------ccceeEEEecC-------------
Confidence 47899999999999999998543 5666678999999984 23599999852
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCceEEEEEcC-C
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN-P 175 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t~-p 175 (828)
.++.+++++.+.+..++.+.|+++|.+|++|+++|+|++.++|||||+.+++.++++.+. |
T Consensus 66 ------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 66 ------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPP 127 (391)
T ss_pred ------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCC
Confidence 237899999999999999999999999999999999999999999999999999999887 4
Q ss_pred CccCCCCCCCCCcccceeeecc----ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~----r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
++.+ .+|+++ .||||+++
T Consensus 128 n~~g------------l~AlS~n~~n~ylAyp~s---------------------------------------------- 149 (391)
T KOG2110|consen 128 NPKG------------LCALSPNNANCYLAYPGS---------------------------------------------- 149 (391)
T ss_pred Cccc------------eEeeccCCCCceEEecCC----------------------------------------------
Confidence 4432 234433 46666520
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
...|.|.|||+.+.+++..|.+|+++|.||+|+|
T Consensus 150 ----------------------------------------------~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 150 ----------------------------------------------TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ----------------------------------------------CCCceEEEEEcccceeeeEEEecCCceeEEEECC
Confidence 1247899999999999999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
||++|||||++||+||||.+..+ .++|+||||.....|++|+|+||+++|+++|.-+|||||.|+.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G--------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEG--------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCc--------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999999999999876 6899999999988899999999999999999999999999987
Q ss_pred C
Q 003336 412 L 412 (828)
Q Consensus 412 ~ 412 (828)
.
T Consensus 250 ~ 250 (391)
T KOG2110|consen 250 V 250 (391)
T ss_pred c
Confidence 4
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.97 E-value=4.9e-30 Score=269.85 Aligned_cols=238 Identities=26% Similarity=0.413 Sum_probs=197.0
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeee--ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSR--YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~--hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
...|+++|.++||+||++++. .|..++ +++++..++||-. ..+||+|+++.
T Consensus 16 D~ScFava~~~Gfriyn~~P~---ke~~~r~~~~~G~~~veMLfR--------------~N~laLVGGg~---------- 68 (346)
T KOG2111|consen 16 DHSCFAVATDTGFRIYNCDPF---KESASRQFIDGGFKIVEMLFR--------------SNYLALVGGGS---------- 68 (346)
T ss_pred CCceEEEEecCceEEEecCch---hhhhhhccccCchhhhhHhhh--------------hceEEEecCCC----------
Confidence 478999999999999999984 444442 4666888899842 36899998642
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECC-CCceEEEEEc
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAA-TLEIEYAILT 173 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~-t~~~l~tL~t 173 (828)
++.|.|+.|.|||-....++.+|.|.++|.+|++.+..|+|.++.+|+||... +.+.++.+.|
T Consensus 69 ----------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 69 ----------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred ----------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeec
Confidence 24578899999999999999999999999999999999999999999999998 7889999999
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
.++|.|.+ ++ . |. . ++++
T Consensus 133 ~~NPkGlC------------~~-------~-------------~~-~-----------------------~k~~------ 150 (346)
T KOG2111|consen 133 RSNPKGLC------------SL-------C-------------PT-S-----------------------NKSL------ 150 (346)
T ss_pred ccCCCceE------------ee-------c-------------CC-C-----------------------CceE------
Confidence 87765432 11 1 00 0 0000
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP 331 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~--i~~f~aH~~pIsaLaFSP 331 (828)
.++|+. ..|.|+|-|+...+. ...+.||.++|.||+.+-
T Consensus 151 -------------------------LafPg~--------------k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 151 -------------------------LAFPGF--------------KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL 191 (346)
T ss_pred -------------------------EEcCCC--------------ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC
Confidence 123332 347899999987654 578899999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+|++|||||.+||.|||||..++ ..+++||||...|.|++|+||||++|||++|+.||+|||.+..
T Consensus 192 ~Gt~vATaStkGTLIRIFdt~~g--------------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 192 QGTLVATASTKGTLIRIFDTEDG--------------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEeccCcEEEEEEEcCCC--------------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999987 6899999999999999999999999999999999999999976
Q ss_pred C
Q 003336 412 L 412 (828)
Q Consensus 412 ~ 412 (828)
.
T Consensus 258 ~ 258 (346)
T KOG2111|consen 258 T 258 (346)
T ss_pred C
Confidence 4
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.4e-23 Score=221.14 Aligned_cols=280 Identities=16% Similarity=0.253 Sum_probs=207.7
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+..+.|+.|..+| +.+||-...+..-+-+.+|...|.++++.|-....+ .| +||-++
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~--------~r-~las~s------------- 224 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP--------CR-RLASSS------------- 224 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC--------cc-ceeccc-------------
Confidence 5577788887666 999998887777788889999999999987543211 11 333222
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S-~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
.+++|+|||+..++++.++.- ..+|.+|++- ..++.. +.|++|++|++..+.+.++|
T Consensus 225 --------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 225 --------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred --------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 237899999999999999975 5699999997 455555 67899999999999999999
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccce----EEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRW----LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~----LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
.+|.. .+|.+|++..| =||- .+|+..+
T Consensus 285 kGHah------------wvN~lalsTdy~LRtgaf~-------~t~~~~~------------------------------ 315 (480)
T KOG0271|consen 285 KGHAH------------WVNHLALSTDYVLRTGAFD-------HTGRKPK------------------------------ 315 (480)
T ss_pred cccch------------heeeeeccchhhhhccccc-------cccccCC------------------------------
Confidence 98842 45667765421 1221 1111100
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISA 326 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~-s~~~i~~f~aH~~pIsa 326 (828)
...|...+.+.+|-.- .+++ | ..++++++|+++.+|+-. +.+++..+.+|..-|..
T Consensus 316 -----~~se~~~~Al~rY~~~-~~~~--------------~---erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 316 -----SFSEEQKKALERYEAV-LKDS--------------G---ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred -----ChHHHHHHHHHHHHHh-hccC--------------c---ceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 0001112333444321 1111 1 235678899999999954 56799999999999999
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI 406 (828)
+.|||||+++|+||.|.. |++||..+| ..|..| |||.. .|+.|+||.|+++|+++|.|.|++|
T Consensus 373 V~fSPd~r~IASaSFDkS-VkLW~g~tG--------------k~lasf-RGHv~-~VYqvawsaDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKS-VKLWDGRTG--------------KFLASF-RGHVA-AVYQVAWSADSRLLVSGSKDSTLKV 435 (480)
T ss_pred EEECCCccEEEEeecccc-eeeeeCCCc--------------chhhhh-hhccc-eeEEEEeccCccEEEEcCCCceEEE
Confidence 999999999999999976 999999987 455566 78764 5999999999999999999999999
Q ss_pred EecCCCCCceeeccCCCCCC
Q 003336 407 FAINPLGGSVNFQPTDANFT 426 (828)
Q Consensus 407 wdl~~~gg~~~~~~H~~~~~ 426 (828)
|++.+..-...+-+|.+..-
T Consensus 436 w~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred EEeeeeeecccCCCCCceEE
Confidence 99999877788889988765
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.88 E-value=9.1e-22 Score=226.45 Aligned_cols=177 Identities=20% Similarity=0.330 Sum_probs=139.8
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++||||+|.|..++-..+- ..||+.|+|+ +-++|. +.|++-++|.....+.++.+.+|-....|
T Consensus 473 ~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c------------ 540 (707)
T KOG0263|consen 473 SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC------------ 540 (707)
T ss_pred cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccce------------
Confidence 7899999999999988875 4599999998 456666 56778999998876666666555221111
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
++|.+ +..
T Consensus 541 -------v~FHP---------------------------Ns~-------------------------------------- 548 (707)
T KOG0263|consen 541 -------VSFHP---------------------------NSN-------------------------------------- 548 (707)
T ss_pred -------EEECC---------------------------ccc--------------------------------------
Confidence 12211 000
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
-.++++.|.+||+||+.+|..++.|.+|+++|.+|+|||+|++||+|+.||. |+|||+.
T Consensus 549 --------------------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~ 607 (707)
T KOG0263|consen 549 --------------------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLA 607 (707)
T ss_pred --------------------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcC
Confidence 1234567889999999999999999999999999999999999999999997 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.+ ..+..| +||+ ..|++|.||.||..||+++.|.+|++||+..-.+
T Consensus 608 ~~--------------~~v~~l-~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 608 NG--------------SLVKQL-KGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CC--------------cchhhh-hccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 76 333344 6774 5699999999999999999999999999976433
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.87 E-value=2e-20 Score=192.12 Aligned_cols=274 Identities=18% Similarity=0.241 Sum_probs=182.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
-.+...||+..+++|...+ |.+...+...|+.|..+++.|+... .-+.-.|-+-+-+-.+.. +....
T Consensus 11 viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~------LAaa~~qhvRlyD~~S~n------p~Pv~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKD------LAAAGNQHVRLYDLNSNN------PNPVA 77 (311)
T ss_pred eEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcch------hhhccCCeeEEEEccCCC------CCcee
Confidence 3455679999999999987 7888888878999999999886421 111111111111110000 00000
Q ss_pred ccCCC-----CCCCCCCCC---CCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCc
Q 003336 98 ACNGT-----SANYHDLGN---GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLE 166 (828)
Q Consensus 98 ~~~g~-----~~~~h~~g~---~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~ 166 (828)
.+.|. +-..|.+|. ....++++||||++.-++-+.++|+++|..|... ..+++.-.++.|+|||+.+-.
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 00000 000112221 1235699999999999999999999999999996 456666778899999998765
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
+-..+..... . ++ +-|+.. .+|+.
T Consensus 158 c~~~liPe~~--~------------~i----~sl~v~---------------------------~dgsm----------- 181 (311)
T KOG0315|consen 158 CTHELIPEDD--T------------SI----QSLTVM---------------------------PDGSM----------- 181 (311)
T ss_pred cccccCCCCC--c------------ce----eeEEEc---------------------------CCCcE-----------
Confidence 5444422110 0 00 011111 01111
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEeccC
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAH 320 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~------~~i~~f~aH 320 (828)
++.+.+.|...+|++-+. +++..|++|
T Consensus 182 -----------------------------------------------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 182 -----------------------------------------------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred -----------------------------------------------EEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 122356688999998764 578889999
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
.+-|....||||+++|||+|.|.+ ++||.+... ...-..+ .|+. ..+++++||.||+||++++.
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~-------------~kle~~l-~gh~-rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDF-------------FKLELVL-TGHQ-RWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCce-EEEEecCCc-------------eeeEEEe-ecCC-ceEEeeeeccCccEEEecCC
Confidence 999999999999999999999988 899998763 1111223 2332 35999999999999999999
Q ss_pred CCcEEEEecCCCCCceeeccCCC
Q 003336 401 RGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 401 DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
|+++|+|++..........+|.-
T Consensus 279 d~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred CCceeecccccCceeeecCCccc
Confidence 99999999998877778888754
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.8e-21 Score=209.64 Aligned_cols=243 Identities=14% Similarity=0.203 Sum_probs=190.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+...+.++-.+||.++.- +....+..|.+.|.++.|-|.- +---||-|+
T Consensus 188 ~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~------------~~~~lat~s---------------- 238 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD------------SDLNLATAS---------------- 238 (459)
T ss_pred CeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCC------------Cccceeeec----------------
Confidence 45555566666999999984 6667778899999999998731 001233222
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+++|++|++.+-..+..|.. ...|..|+|. +++|+. ++|.+=++||+.|.+.+...++
T Consensus 239 -----------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG 301 (459)
T KOG0272|consen 239 -----------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG 301 (459)
T ss_pred -----------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc
Confidence 238899999999889998875 5699999995 788886 7899999999999988877788
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|.... + -|||-. +|+++
T Consensus 302 Hs~~v--------------~-----~iaf~~---------------------------DGSL~----------------- 318 (459)
T KOG0272|consen 302 HSKGV--------------F-----SIAFQP---------------------------DGSLA----------------- 318 (459)
T ss_pred ccccc--------------c-----eeEecC---------------------------CCcee-----------------
Confidence 74311 1 123321 22222
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
++++.|..-+|||+++++++-.|.+|..+|..|+|||+|
T Consensus 319 -----------------------------------------~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 319 -----------------------------------------ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG 357 (459)
T ss_pred -----------------------------------------eccCccchhheeecccCcEEEEecccccceeeEeECCCc
Confidence 234566778999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..|||||.|++ ++|||++.. ..+|++. +|++ .|..|+|+| -|++|+++|.|+|++||.-...
T Consensus 358 y~lATgs~Dnt-~kVWDLR~r--------------~~ly~ip-AH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 358 YHLATGSSDNT-CKVWDLRMR--------------SELYTIP-AHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred eEEeecCCCCc-EEEeeeccc--------------ccceecc-cccc-hhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 99999999998 899999874 3466663 4443 499999999 8899999999999999999988
Q ss_pred CCceeeccCCCCCCc
Q 003336 413 GGSVNFQPTDANFTT 427 (828)
Q Consensus 413 gg~~~~~~H~~~~~~ 427 (828)
....++.+|.+.+..
T Consensus 421 ~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVIS 435 (459)
T ss_pred ccchhhcCCccceEE
Confidence 888899999886553
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.4e-20 Score=200.42 Aligned_cols=222 Identities=19% Similarity=0.237 Sum_probs=172.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+..+++++.+++|+++....+.+ +..|-..|..++|=|.+. .|+-.+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~-l~gH~~RVs~VafHPsG~--------------~L~Tas---------------- 280 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQD-LEGHLARVSRVAFHPSGK--------------FLGTAS---------------- 280 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhh-hhcchhhheeeeecCCCc--------------eeeecc----------------
Confidence 4666777788899999987433333 345788888888887642 232111
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+.+-+|||+.|++.+...+- ...|++|+|. +.+++. ++|..-+|||++|+.++..|.+
T Consensus 281 -----------------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 281 -----------------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred -----------------cccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 237889999999998887765 4589999996 667666 6788899999999999999988
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|..+. ++ ++|++ +|.
T Consensus 344 H~k~I--------------~~-----V~fsP---------------------------NGy------------------- 358 (459)
T KOG0272|consen 344 HIKEI--------------LS-----VAFSP---------------------------NGY------------------- 358 (459)
T ss_pred cccce--------------ee-----EeECC---------------------------Cce-------------------
Confidence 74321 11 12221 111
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-C
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S 332 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-d 332 (828)
++++++.|++++|||++..+.+.++.||..-|+.|+|+| .
T Consensus 359 ---------------------------------------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 359 ---------------------------------------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ---------------------------------------EEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 245677899999999999999999999999999999999 7
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|.+|+|||.|++ ++||...+. .++..| -||. .+|.++.+|+||++|++++-|+|+++|.
T Consensus 400 g~fL~TasyD~t-~kiWs~~~~--------------~~~ksL-aGHe-~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNT-VKIWSTRTW--------------SPLKSL-AGHE-GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcc-eeeecCCCc--------------ccchhh-cCCc-cceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999998 899988765 344455 4665 4699999999999999999999999995
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.7e-19 Score=193.71 Aligned_cols=240 Identities=14% Similarity=0.187 Sum_probs=179.6
Q ss_pred CcEEEEEc-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+.|+.|. +..+++||+++ ....-.+.+|..-|-|+.+.|++. .| +++
T Consensus 127 g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk--------------~i--ASG-------------- 175 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGK--------------KI--ASG-------------- 175 (480)
T ss_pred CceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCcc--------------hh--hcc--------------
Confidence 44555554 66799999997 345667888999999999998641 12 221
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEE-EEe-CCCCEEEEEEc-------CCEEEE-EeCCEEEEEECCCCc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVH-MLK-FRSPIYSVRCS-------SRVVAI-CQAAQVHCFDAATLE 166 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~-tL~-f~s~V~sV~~S-------~riLAV-s~~~~I~IwDl~t~~ 166 (828)
..+++|+|||.++|+++- .|. ++-.|.+++|- .++||. +-|+.|+|||+.-++
T Consensus 176 -----------------~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 176 -----------------SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred -----------------ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 123889999999998764 454 45689999993 456776 557899999999999
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
+++++.+|.++..| +- +.
T Consensus 239 ~~~~lsgHT~~VTC------------vr-------wG------------------------------------------- 256 (480)
T KOG0271|consen 239 CVRTLSGHTASVTC------------VR-------WG------------------------------------------- 256 (480)
T ss_pred EEEEeccCccceEE------------EE-------Ec-------------------------------------------
Confidence 99999888643222 11 11
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsa 326 (828)
|+ +.+.+++.|++|++|+...|+++..|++|.+-|+.
T Consensus 257 --------G~-----------------------------------gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~ 293 (480)
T KOG0271|consen 257 --------GE-----------------------------------GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNH 293 (480)
T ss_pred --------CC-----------------------------------ceEEecCCCceEEEEEccchhHHHhhcccchheee
Confidence 00 01223567899999999999999999999999999
Q ss_pred EEEc-----------CCCCE-------------------------EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 327 LCFD-----------PSGIL-------------------------LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 327 LaFS-----------PdG~l-------------------------LATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
|+.| |.|.. |++||+|++ +.+|+-... ...
T Consensus 294 lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~~-------------kkp 359 (480)
T KOG0271|consen 294 LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFKS-------------KKP 359 (480)
T ss_pred eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce-EEEeccccc-------------ccc
Confidence 8765 55655 999999998 679986542 122
Q ss_pred EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~ 426 (828)
+.++ .|| .+.|..+.||||++|||++|-|..|++|+-.++.-..+|++|-....
T Consensus 360 i~rm-tgH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 360 ITRM-TGH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred hhhh-hch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 2233 244 35699999999999999999999999999999888889999976544
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.82 E-value=4e-18 Score=178.53 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=169.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC-CEEEEEEc--CCEEEE-EeCCEEEEEECCCC------ceEEEEEcCCCccCCCCCCCC
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI-CQAAQVHCFDAATL------EIEYAILTNPIVMGHPSAGGI 186 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S--~riLAV-s~~~~I~IwDl~t~------~~l~tL~t~p~~~~~p~~~~~ 186 (828)
+.+.+||.-|...++-+..++ .|-..+|+ ++++|. ++++.-.||++.+- +..+.|.+|.. +
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg---y------ 147 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG---Y------ 147 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc---e------
Confidence 789999999999999999976 89889995 788887 78999999999965 23344555531 1
Q ss_pred CcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccc
Q 003336 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (828)
Q Consensus 187 ~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~ 266 (828)
++ - .-|..+..+ + .+|.+.+-+.|..+.++++.. ..|+.+- -++
T Consensus 148 ------lS--c--C~f~dD~~i-----------l--------T~SGD~TCalWDie~g~~~~~---f~GH~gD-V~s--- 191 (343)
T KOG0286|consen 148 ------LS--C--CRFLDDNHI-----------L--------TGSGDMTCALWDIETGQQTQV---FHGHTGD-VMS--- 191 (343)
T ss_pred ------eE--E--EEEcCCCce-----------E--------ecCCCceEEEEEcccceEEEE---ecCCccc-EEE---
Confidence 10 0 112222111 1 123456677777777765432 2233220 000
Q ss_pred ccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEE
Q 003336 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 346 (828)
Q Consensus 267 ~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I 346 (828)
-++ .|. + ..+|++++.|+..+|||++++.++++|.+|.+.|++|+|-|+|.-+||||+|++ +
T Consensus 192 lsl-----------~p~---~---~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-c 253 (343)
T KOG0286|consen 192 LSL-----------SPS---D---GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-C 253 (343)
T ss_pred Eec-----------CCC---C---CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-e
Confidence 001 110 1 236889999999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCC
Q 003336 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (828)
Q Consensus 347 ~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~ 426 (828)
|+||++.. +.+..+..-.....|.+++||.-|++|.+|..|.+++|||.-.....-.+.+|.+.+.
T Consensus 254 RlyDlRaD--------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 254 RLYDLRAD--------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS 319 (343)
T ss_pred EEEeecCC--------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence 99999975 2333333333334599999999999999999999999999988766678899988765
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=5e-18 Score=194.28 Aligned_cols=278 Identities=18% Similarity=0.229 Sum_probs=182.8
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCC-CEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR-PLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~r-PLLavv~~~~~~g~~~~~Dg~ 95 (828)
-.+|++|+.+| |.+|.+.+. ++-..+|--+-+|..+.+-..+.- =.|...+ ..|.|+-.-...=.-..+.+.
T Consensus 277 t~~lvvgFssG~f~LyelP~f-~lih~LSis~~~I~t~~~N~tGDW-----iA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDF-NLIHSLSISDQKILTVSFNSTGDW-----IAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred ceEEEEEecCCeeEEEecCCc-eEEEEeecccceeeEEEecccCCE-----EEEcCCccceEEEEEeeccceeeeccccc
Confidence 57899999999 679999874 455666666778887777533210 0111111 123333311100000011111
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEE-EEeCCEEEEEECCCCceEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLA-Vs~~~~I~IwDl~t~~~l~tL 171 (828)
......+-.++.+.......+++||+||..+|-|+.++. +.+.|.+|.|. ++.|. .++|++|++||+...++-+|+
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 111111112222222233356999999999999999995 67899999996 55554 489999999999999988887
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.. |.+ +.+..+|+.| .|.+| .
T Consensus 431 t~-P~p----------~QfscvavD~----------------------------------sGelV-----------~--- 451 (893)
T KOG0291|consen 431 TS-PEP----------IQFSCVAVDP----------------------------------SGELV-----------C--- 451 (893)
T ss_pred cC-CCc----------eeeeEEEEcC----------------------------------CCCEE-----------E---
Confidence 43 322 1222233210 01111 0
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
+.+.+.=.|.||++++|+.+-.+.+|.+||.+|+|+|
T Consensus 452 -------------------------------------------AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 452 -------------------------------------------AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred -------------------------------------------eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence 0011223699999999999999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+|.+|||+|.|.| ||+||+... .+.++ ++.- ...+..++|+|||+-||+++.||.|.+||+..
T Consensus 489 ~~~~LaS~SWDkT-VRiW~if~s----------~~~vE---tl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 489 DGSLLASGSWDKT-VRIWDIFSS----------SGTVE---TLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ccCeEEeccccce-EEEEEeecc----------Cceee---eEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 9999999999988 899999753 11222 3321 24589999999999999999999999999988
Q ss_pred CCCceeecc
Q 003336 412 LGGSVNFQP 420 (828)
Q Consensus 412 ~gg~~~~~~ 420 (828)
.....++.+
T Consensus 552 ~~q~~~Idg 560 (893)
T KOG0291|consen 552 AVQVGSIDG 560 (893)
T ss_pred ceeeccccc
Confidence 765555554
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=3.7e-17 Score=165.65 Aligned_cols=221 Identities=17% Similarity=0.306 Sum_probs=163.7
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.+++++.++.++|||+... .....+..|.+.|.++.+.|.. .+++.+..
T Consensus 65 ~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~---------------- 113 (289)
T cd00200 65 YLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPDG--------------RILSSSSR---------------- 113 (289)
T ss_pred EEEEEcCCCeEEEEEcCcc-cceEEEeccCCcEEEEEEcCCC--------------CEEEEecC----------------
Confidence 5556666777999999863 3444555678889999887631 24443321
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEEEe-CCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAVs~-~~~I~IwDl~t~~~l~tL~t~ 174 (828)
.+.|++||+++++.+..+. +...|.++.++ +++++++. ++.|++||+.+.+.+..+..+
T Consensus 114 -----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 114 -----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred -----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 1679999999999998887 56689999997 47777766 899999999988777666543
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
... . .-+++.. ++.
T Consensus 177 ~~~------------i-------~~~~~~~---------------------------~~~-------------------- 190 (289)
T cd00200 177 TGE------------V-------NSVAFSP---------------------------DGE-------------------- 190 (289)
T ss_pred ccc------------c-------ceEEECC---------------------------CcC--------------------
Confidence 210 0 0112210 000
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~ 334 (828)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|++.
T Consensus 191 --------------------------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 191 --------------------------------------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred --------------------------------------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 011223478999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
++++++.+|. |++||+..+ ..+..+. ++ ...|.+++|+|++++|++++.||+++||+
T Consensus 233 ~~~~~~~~~~-i~i~~~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGT-IRVWDLRTG--------------ECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCc-EEEEEcCCc--------------eeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999998988 899999865 3334443 33 23599999999999999999999999996
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=6.3e-18 Score=176.21 Aligned_cols=185 Identities=15% Similarity=0.289 Sum_probs=141.2
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
+++++|+||+.+|+..+.|.. ..-|.+|+|+ ++++..+-|++|.+||.. +++.+++.....
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~-------------- 147 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSH-------------- 147 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCC--------------
Confidence 569999999999988887764 5589999997 355555778999999987 456667654310
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
..|+..- |.+|...
T Consensus 148 ------~~WVscv----------rfsP~~~-------------------------------------------------- 161 (315)
T KOG0279|consen 148 ------REWVSCV----------RFSPNES-------------------------------------------------- 161 (315)
T ss_pred ------cCcEEEE----------EEcCCCC--------------------------------------------------
Confidence 0111111 0011000
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
+..+++++.|++|+|||+.+.+....|.+|++.++.++|||||.++|+|+.||. +.+||
T Consensus 162 --------------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~Lwd 220 (315)
T KOG0279|consen 162 --------------------NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWD 220 (315)
T ss_pred --------------------CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEE
Confidence 012456678999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
+..+ +++|.|.- ...|.++||+|+-.||+.+...+ |+|||+.+......++
T Consensus 221 L~~~--------------k~lysl~a---~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 221 LNEG--------------KNLYSLEA---FDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELK 271 (315)
T ss_pred ccCC--------------ceeEeccC---CCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcc
Confidence 9876 67899843 23599999999999998887664 9999999875554444
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=9.3e-17 Score=162.70 Aligned_cols=236 Identities=19% Similarity=0.314 Sum_probs=171.5
Q ss_pred CcEEEEEc-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+|+.|. ++.+++||+.. +.....+..|..++..+.+.|.. .+|++++.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--------------~~l~~~~~-------------- 71 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG--------------TYLASGSS-------------- 71 (289)
T ss_pred CCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC--------------CEEEEEcC--------------
Confidence 35555555 66699999987 34555666688888888887642 24444432
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEEEe-CCEEEEEECCCCceEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAICQ-AAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~--riLAVs~-~~~I~IwDl~t~~~l~tL~ 172 (828)
.+.|++||+.+++.+..+.. ...|.++.++. ++++++. ++.|++||+.+.+....+.
T Consensus 72 -------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 72 -------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred -------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 16799999999888888875 45899999974 7777776 8999999999888777765
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.+... + ..+++.. .+.
T Consensus 133 ~~~~~---------------i----~~~~~~~---------------------------~~~------------------ 148 (289)
T cd00200 133 GHTDW---------------V----NSVAFSP---------------------------DGT------------------ 148 (289)
T ss_pred cCCCc---------------E----EEEEEcC---------------------------cCC------------------
Confidence 43210 0 1122221 000
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|+
T Consensus 149 ----------------------------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 188 (289)
T cd00200 149 ----------------------------------------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188 (289)
T ss_pred ----------------------------------------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC
Confidence 0112234789999999999999999999999999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
++.|++++.+|. |++||+..+ ..+..+. ++. ..|.+++|+|++.++++++.||++++|++...
T Consensus 189 ~~~l~~~~~~~~-i~i~d~~~~--------------~~~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 189 GEKLLSSSSDGT-IKLWDLSTG--------------KCLGTLR-GHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cCEEEEecCCCc-EEEEECCCC--------------ceecchh-hcC-CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 999999999987 899999864 2222331 222 35999999999999999999999999999876
Q ss_pred CCceeeccCC
Q 003336 413 GGSVNFQPTD 422 (828)
Q Consensus 413 gg~~~~~~H~ 422 (828)
.....+..|.
T Consensus 252 ~~~~~~~~~~ 261 (289)
T cd00200 252 ECVQTLSGHT 261 (289)
T ss_pred eeEEEccccC
Confidence 5555555553
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.80 E-value=1.7e-17 Score=182.38 Aligned_cols=271 Identities=16% Similarity=0.284 Sum_probs=188.9
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.+|+.|.-+| ++||+.+ |+....+..|.|||..+++--+ +. .|+ +.+
T Consensus 247 G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~--------G~------yil--S~~------------- 295 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKK--------GT------YIL--SGG------------- 295 (524)
T ss_pred CCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCC--------CC------EEE--ecc-------------
Confidence 78899998888 6999987 5677888899999999998532 12 221 111
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCE-EEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI-YSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V-~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.++++-+||..+|+....+.|.+.. .+|.+- ..++....++.|++|-+..-....++.+
T Consensus 296 ------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 296 ------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred ------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 2278999999999999999998766 888883 3444446788999999998888889988
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
|.++ ++.+-..| ..||.++++ .++..|.+..+...
T Consensus 358 H~g~------------V~alk~n~tg~LLaS~SdD---------------------------~TlkiWs~~~~~~~---- 394 (524)
T KOG0273|consen 358 HHGE------------VNALKWNPTGSLLASCSDD---------------------------GTLKIWSMGQSNSV---- 394 (524)
T ss_pred ccCc------------eEEEEECCCCceEEEecCC---------------------------CeeEeeecCCCcch----
Confidence 8653 22333332 456666433 22222221100000
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
-++..+.-.-|.....|++... .++ ..+..++++..+++|++||+..+.++++|..|..||.+|+|||
T Consensus 395 ---~~l~~Hskei~t~~wsp~g~v~---~n~------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 395 ---HDLQAHSKEIYTIKWSPTGPVT---SNP------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred ---hhhhhhccceeeEeecCCCCcc---CCC------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 0000000000111122332110 011 1123456778899999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+|++||+|+.||. |+||++.++ .+|+-.+|. ..|..+||+-+|.+|+.+-+|+.+.+-|+.
T Consensus 463 ~g~ylAsGs~dg~-V~iws~~~~---------------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGC-VHIWSTKTG---------------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCe-eEeccccch---------------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999997 899999886 455555554 349999999999999999999999998874
No 17
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.79 E-value=2.8e-17 Score=200.66 Aligned_cols=227 Identities=14% Similarity=0.222 Sum_probs=163.9
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++..++++.++|||+.. +.....+..|.+.|.++++.|.. ..+|+.++.
T Consensus 546 ~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~-------------~~~L~Sgs~--------------- 596 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSAD-------------PTLLASGSD--------------- 596 (793)
T ss_pred CEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCCC-------------CCEEEEEcC---------------
Confidence 4566677777899999986 44555667799999999997621 024443332
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCc-eEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~-~l~tL~ 172 (828)
+++|++||+++++.+.++.....|.++.|+ +++|++ +.++.|++||+.+.+ .+.++.
T Consensus 597 ------------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 597 ------------------DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred ------------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 278999999999999999988899999994 566766 568899999998765 344444
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|.. ++ .+++|.. +
T Consensus 659 ~h~~---------------~V----~~v~f~~----------------------------~------------------- 672 (793)
T PLN00181 659 GHSK---------------TV----SYVRFVD----------------------------S------------------- 672 (793)
T ss_pred CCCC---------------CE----EEEEEeC----------------------------C-------------------
Confidence 4321 01 1122210 0
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEE
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISA 326 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s------~~~i~~f~aH~~pIsa 326 (828)
..+++++.||.|+|||+.. .+++..|.+|...+.+
T Consensus 673 ---------------------------------------~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 673 ---------------------------------------STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred ---------------------------------------CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 0123456789999999974 3678899999999999
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---------cCCccccEEEEEEccCCCEEEE
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~---------RG~t~a~I~sIaFSpDg~~LAs 397 (828)
++|+|+|.+||+|+.||+ |+||+...... ...+.+. -......|.+++|+||+..|++
T Consensus 714 v~~s~~~~~lasgs~D~~-v~iw~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva 780 (793)
T PLN00181 714 VGLSVSDGYIATGSETNE-VFVYHKAFPMP------------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA 780 (793)
T ss_pred EEEcCCCCEEEEEeCCCE-EEEEECCCCCc------------eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE
Confidence 999999999999999998 89999764310 0111110 0011234999999999999999
Q ss_pred EeCCCcEEEEec
Q 003336 398 SSSRGTSHLFAI 409 (828)
Q Consensus 398 ~S~DGTVhIwdl 409 (828)
++.||+|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 999999999997
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.6e-17 Score=187.08 Aligned_cols=192 Identities=18% Similarity=0.295 Sum_probs=151.5
Q ss_pred CCCEEEEEECCCCc--EEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEEC-CCCceEEEEEcCCCccCCCCCCCCC
Q 003336 115 VPTVVHFYSLRSQS--YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDA-ATLEIEYAILTNPIVMGHPSAGGIG 187 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~--~V~tL-~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl-~t~~~l~tL~t~p~~~~~p~~~~~~ 187 (828)
..+++++|++.+++ ..+++ .+...|..++|+ +++++. +.|.+|+|||+ ..+.+++++.+|+...
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v--------- 249 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV--------- 249 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce---------
Confidence 44889999998777 66666 456789999996 556665 67789999999 5568899999885421
Q ss_pred cccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccc
Q 003336 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (828)
Q Consensus 188 ~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~ 267 (828)
.+ ++|.. + |.
T Consensus 250 -----~~-----~~f~p-------------~--------------g~--------------------------------- 259 (456)
T KOG0266|consen 250 -----TS-----VAFSP-------------D--------------GN--------------------------------- 259 (456)
T ss_pred -----EE-----EEecC-------------C--------------CC---------------------------------
Confidence 11 22321 0 00
Q ss_pred cccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 268 ~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
.+++++.|++|+|||+.+++++..|.+|..+|++++|++||.+|+++|.||. |+
T Consensus 260 -------------------------~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~ 313 (456)
T KOG0266|consen 260 -------------------------LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IR 313 (456)
T ss_pred -------------------------EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EE
Confidence 1234678999999999999999999999999999999999999999999997 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecCCccc-cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
|||+.++ ...++..+.+ .... .+..++|+|++++|++++.|+++++|++........+.+|.+.
T Consensus 314 vwd~~~~------------~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLETG------------SKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEECCCC------------ceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 9999986 1112334433 3334 6899999999999999999999999999998888899998764
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.2e-17 Score=179.01 Aligned_cols=238 Identities=13% Similarity=0.202 Sum_probs=177.8
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.++|+.+...- +++||.+..-.+...+.+|+-.|.++.++|.+ ..|+-|+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g--------------d~ilS~s--------------- 212 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG--------------DHILSCS--------------- 212 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC--------------Ceeeecc---------------
Confidence 57777777666 89999987656677778899999999999953 1233232
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAVs-~~~~I~IwDl~t~~~l~tL~ 172 (828)
.+.+|+.|++.||-+++++.- +..|..|+.+ +.++|.+ .+.++++|-+.+++++..+.
T Consensus 213 ------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 213 ------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 238899999999999999976 4589999997 6778875 46689999999998888777
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|..+.- .+|++... .-++... |
T Consensus 275 ~hEh~vE-------------------ci~wap~~-------------~~~~i~~-------------a------------ 297 (406)
T KOG0295|consen 275 EHEHPVE-------------------CIAWAPES-------------SYPSISE-------------A------------ 297 (406)
T ss_pred ccccceE-------------------EEEecccc-------------cCcchhh-------------c------------
Confidence 7643211 13333110 0000000 0
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
.+.+ +| ...+..++.|++|++||+.++.++-++.+|..-|..++|+|-
T Consensus 298 -----------------t~~~-------------~~--~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 298 -----------------TGST-------------NG--GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred -----------------cCCC-------------CC--ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence 0000 00 001234678999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|++|+++.+|++ +||||+... +++.++. . ...-|.++.|..+.-++.+|+-|.|+++|.
T Consensus 346 Gkyi~ScaDDkt-lrvwdl~~~--------------~cmk~~~-a-h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 346 GKYILSCADDKT-LRVWDLKNL--------------QCMKTLE-A-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CeEEEEEecCCc-EEEEEeccc--------------eeeeccC-C-CcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999998 899999876 5555554 2 234599999999999999999999999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=183.68 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=175.3
Q ss_pred cEEEEE-ccCCeEEEEecCCC-ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 19 RVLLLG-YRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 19 ~vLl~G-y~~G~qVWdv~~~~-~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.|+.+ .+.-+.+|+..... +....+..|.-.|+.++|.|++. . +++.+
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~--------------~--l~s~s------------- 222 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS--------------Y--LLSGS------------- 222 (456)
T ss_pred CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc--------------E--EEEec-------------
Confidence 334444 56668999996533 13344467899999999988641 2 23321
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEEC-CCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL-~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
.+.+|++||+ ..+.++++|+ +...|++++|+ +++|+. +.|++|+|||+.+++++.+|
T Consensus 223 ------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 223 ------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred ------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 1289999999 5568999997 46799999997 556665 67899999999999999999
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.+|... +.. +++.. +|.
T Consensus 285 ~~hs~~------------is~-------~~f~~---------------------------d~~----------------- 301 (456)
T KOG0266|consen 285 KGHSDG------------ISG-------LAFSP---------------------------DGN----------------- 301 (456)
T ss_pred eccCCc------------eEE-------EEECC---------------------------CCC-----------------
Confidence 888531 111 22221 111
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEE
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSP--ISAL 327 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~p--IsaL 327 (828)
.+++++.||.|+|||+.++. ++..+..+..+ ++++
T Consensus 302 -----------------------------------------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 302 -----------------------------------------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSV 340 (456)
T ss_pred -----------------------------------------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEE
Confidence 12234568999999999999 67888888766 9999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc--cEEEEEEccCCCEEEEEeCCCcEE
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
+|+|+|++|+++..|++ +++||+..+ .....+ +++... .+.+..++++++++.+++.|++|+
T Consensus 341 ~fsp~~~~ll~~~~d~~-~~~w~l~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRT-LKLWDLRSG------------KSVGTY---TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred EECCCCcEEEEecCCCe-EEEEEccCC------------cceeee---cccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 99999999999999987 899999875 112222 344432 477778899999999999999999
Q ss_pred EEecCCCCCceeeccCC
Q 003336 406 LFAINPLGGSVNFQPTD 422 (828)
Q Consensus 406 Iwdl~~~gg~~~~~~H~ 422 (828)
+|++.+......+.+|.
T Consensus 405 ~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 405 VWDSSSGGILQRLEGHS 421 (456)
T ss_pred EEeCCccchhhhhcCCC
Confidence 99999977777888884
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=8.3e-17 Score=165.69 Aligned_cols=230 Identities=14% Similarity=0.218 Sum_probs=158.7
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEEEeCCEEEEEECCCCc--eEEEEEcCCCccCCCCCCCCCcc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIG 189 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~--~l~tL~t~p~~~~~p~~~~~~~~ 189 (828)
++.|||||-+.||.|..++++ .+.|.++... ++.||++....|++||+++.. .+.+++.+..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k------------- 84 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK------------- 84 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-------------
Confidence 458999999999999999999 5699999996 788999989999999999875 4667766522
Q ss_pred cceeeec----cceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccc
Q 003336 190 YGPLAVG----PRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (828)
Q Consensus 190 ~~piAlg----~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y 265 (828)
|.+++| .||+..++++ .++..|.+.+ -...+-
T Consensus 85 -NVtaVgF~~dgrWMyTgseD---------------------------gt~kIWdlR~----------------~~~qR~ 120 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSED---------------------------GTVKIWDLRS----------------LSCQRN 120 (311)
T ss_pred -ceEEEEEeecCeEEEecCCC---------------------------ceEEEEeccC----------------cccchh
Confidence 223333 4887766432 2222222111 000000
Q ss_pred cccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCC
Q 003336 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGH 344 (828)
Q Consensus 266 ~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt 344 (828)
+..-.|- +.+ ...|. -+.+..++..|.|+|||+.+..+...+- ....+|.+|+..|||++|+.+-.+|+
T Consensus 121 ~~~~spV--n~v-vlhpn-------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 121 YQHNSPV--NTV-VLHPN-------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ccCCCCc--ceE-EecCC-------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 0000000 000 00111 1356678899999999999887666554 44578999999999999999999998
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC-CCceeeccCC
Q 003336 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTD 422 (828)
Q Consensus 345 ~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~-gg~~~~~~H~ 422 (828)
..+|++..+..-+ ....+.+++ .+. .-|..+-||||+++||++|+|.|++||.++.+ .....+++|.
T Consensus 191 -cyvW~l~~~~~~s--------~l~P~~k~~-ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 191 -CYVWRLLNHQTAS--------ELEPVHKFQ-AHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred -EEEEEccCCCccc--------cceEhhhee-ccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 7999998752111 223333442 222 23899999999999999999999999999988 7777888885
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2e-17 Score=177.36 Aligned_cols=236 Identities=16% Similarity=0.268 Sum_probs=177.8
Q ss_pred CcEEEEE-ccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+++++ -+..+++||..+ +++.+.+..|...|..+.+-.. --+||-|+. |
T Consensus 120 ~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~--------------Gk~l~tcSs----------D--- 171 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDAS--------------GKYLATCSS----------D--- 171 (406)
T ss_pred ceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecC--------------ccEEEecCC----------c---
Confidence 4455555 455699999997 6777777788777887776421 124544442 1
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCC-CcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-g~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
-.+++||..+ .++++++. +...|.+|.|- +..|+. +-|.+|+.||..|+.+++++
T Consensus 172 --------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 172 --------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred --------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 3389999987 56666654 45678888884 566665 56789999999999999998
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
..|+... -.+++ . . +
T Consensus 232 ~~h~ewv------------r~v~v-------~-------~--------------------D------------------- 246 (406)
T KOG0295|consen 232 PGHSEWV------------RMVRV-------N-------Q--------------------D------------------- 246 (406)
T ss_pred cCchHhE------------EEEEe-------c-------C--------------------C-------------------
Confidence 7764311 00110 0 0 0
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
|+ .+++++.+-+|++|-+.++++.+.|+.|..+|-|++|-|
T Consensus 247 ------------------------------------Gt---i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 247 ------------------------------------GT---IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred ------------------------------------ee---EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc
Confidence 11 133456788999999999999999999999999999877
Q ss_pred C---------------CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEE
Q 003336 332 S---------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (828)
Q Consensus 332 d---------------G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 396 (828)
. |.+|+++|.|++ |++||+.++ .+|++|. |+.+ .|.+++|+|-|+||+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg--------------~cL~tL~-ghdn-wVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTG--------------MCLFTLV-GHDN-WVRGVAFSPGGKYIL 350 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccce-EEEEeccCC--------------eEEEEEe-cccc-eeeeeEEcCCCeEEE
Confidence 4 258999999998 999999987 7899994 6654 599999999999999
Q ss_pred EEeCCCcEEEEecCCCCCceeeccCC
Q 003336 397 ISSSRGTSHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 397 s~S~DGTVhIwdl~~~gg~~~~~~H~ 422 (828)
++.+|+|+||||+....+..++..|.
T Consensus 351 ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred EEecCCcEEEEEeccceeeeccCCCc
Confidence 99999999999999988887777664
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.74 E-value=1.8e-15 Score=168.26 Aligned_cols=314 Identities=13% Similarity=0.223 Sum_probs=194.3
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeee--eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS--~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.++...|.++.+.|||=.+...+.++-+ .|.|.|..+.++|+.. .++-|+.
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--------------~~~T~Sa------------- 255 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--------------QFLTVSA------------- 255 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--------------eEEEecC-------------
Confidence 6788899999999999887555555543 6899999999999631 2333432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEE-----cCCEEEEEeCCEEEEEECCCCceEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-----SSRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-----S~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
+.++||||..+.++++++.+.+.|..... +..+|.|++.+.|.++++..+..+++
T Consensus 256 --------------------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 256 --------------------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred --------------------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 27899999999999999999776543222 47788899999999999999998899
Q ss_pred EEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~--~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
+.+|.. ++..+++++ .+|-.++.+ +..|..|.-....+.+ ...+..+...+...+.+
T Consensus 316 i~GHnK------------~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g-------~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 316 ISGHNK------------SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG-------KGHTNQIKGMAASESGE 376 (603)
T ss_pred eccccc------------ceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc-------ccccceEEEEeecCCCc
Confidence 988842 233455555 333333322 1122222211111100 01112222222211111
Q ss_pred eec-e-----------------------------eEeccCccceeecccccc-cc---------CCCCCCcccccCCCCC
Q 003336 247 LAA-G-----------------------------IVNLGDLGYKKLSQYCSE-FL---------PDSQNSLQSAIPGGKS 286 (828)
Q Consensus 247 las-G-----------------------------l~~lGd~g~~~ls~y~~~-~~---------p~~~~si~sa~~~~k~ 286 (828)
+.. | +-.+.+-++--++-+-.- ++ |-+..+...|....+
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~- 455 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG- 455 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-
Confidence 110 0 100101000000000000 00 001111111111111
Q ss_pred CCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCC
Q 003336 287 NGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (828)
Q Consensus 287 ~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~ 364 (828)
..++-++.||.|+||.+.... .......|..+|++|+|||||++||.+...+. +-+||.....
T Consensus 456 -----~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~~--------- 520 (603)
T KOG0318|consen 456 -----SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASRE--------- 520 (603)
T ss_pred -----CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccCc---------
Confidence 133457899999999998654 44566789999999999999999999999987 7899998751
Q ss_pred CCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 365 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 365 ~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.+ .-+.+.+.++|.+|+||||+++||+||.|-+|+||.+........++
T Consensus 521 ----~~--~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 521 ----VK--TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ----ee--cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence 11 22234445789999999999999999999999999998765554443
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.73 E-value=9.1e-17 Score=185.56 Aligned_cols=116 Identities=13% Similarity=0.268 Sum_probs=102.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
|++++.|++.++|....-.+++.|.+|-+.|.|++|.|++.|+||||.|.+ +|+||+.++ ..++++
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G------------~~VRiF- 573 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTG------------NSVRIF- 573 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCC------------cEEEEe-
Confidence 456678999999999999999999999999999999999999999999987 899999987 223333
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~ 426 (828)
+||+ +.|.+++|||+|+|||+|+.||.|+|||+..+.....+.+|++.+.
T Consensus 574 --~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 574 --TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred --cCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 6775 5699999999999999999999999999988777778999976554
No 25
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.1e-15 Score=157.73 Aligned_cols=239 Identities=14% Similarity=0.235 Sum_probs=164.4
Q ss_pred CCcEEEEEccC-CeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.+.+|+.+.++ .+||||+.. +.+...+..+.=+|..+++... +-.++.+. +.
T Consensus 25 ~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~---------------~~~~i~sS-tk---------- 77 (311)
T KOG1446|consen 25 DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHH---------------SNTVIHSS-TK---------- 77 (311)
T ss_pred CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecC---------------CceEEEcc-CC----------
Confidence 46667775555 899999998 4555555555555666676532 12233331 10
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL 171 (828)
.+.+||.-||.++++++.+.- ...|.+|+.+ ..+|.++.|++|++||++..+|.-.+
T Consensus 78 -------------------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 78 -------------------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred -------------------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 237899999999999999975 5689999997 35677789999999999988776555
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.-.+ .|+ .||.+ +.| +
T Consensus 139 ~~~~---------------~pi------~AfDp-------------~GL---------------i--------------- 154 (311)
T KOG1446|consen 139 NLSG---------------RPI------AAFDP-------------EGL---------------I--------------- 154 (311)
T ss_pred ecCC---------------Ccc------eeECC-------------CCc---------------E---------------
Confidence 3321 122 24541 100 0
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC--CcEEEEec---cCCCCeEE
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS--KNVIAQFR---AHKSPISA 326 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s--~~~i~~f~---aH~~pIsa 326 (828)
|+.+.....|+|||+++ +.+..+|. +-....+.
T Consensus 155 ------------------------------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~ 192 (311)
T KOG1446|consen 155 ------------------------------------------FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTD 192 (311)
T ss_pred ------------------------------------------EEEecCCCeEEEEEecccCCCCceeEccCCCCccceee
Confidence 11122233899999986 35666665 33678999
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI 406 (828)
|.|||||++|+-+...+. |+|.|...| .+.+-+.+++....- -.+.+|+|||++|.+++.||+|||
T Consensus 193 l~FS~dGK~iLlsT~~s~-~~~lDAf~G------------~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 193 LEFSPDGKSILLSTNASF-IYLLDAFDG------------TVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred eEEcCCCCEEEEEeCCCc-EEEEEccCC------------cEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEEE
Confidence 999999999988888776 899999887 233333333322211 257899999999999999999999
Q ss_pred EecCCCCCceeeccC
Q 003336 407 FAINPLGGSVNFQPT 421 (828)
Q Consensus 407 wdl~~~gg~~~~~~H 421 (828)
|+++++.....+++-
T Consensus 259 w~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 259 WNLETGKKVAVLRGP 273 (311)
T ss_pred EEcCCCcEeeEecCC
Confidence 999887666677763
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.72 E-value=3.3e-15 Score=182.56 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=134.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
++|++||+.+++.+..++. ...|++|+|+ +.+|++ +.+++|++||+.+++++.++..+..
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------------- 619 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN--------------- 619 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC---------------
Confidence 7899999999999998864 6789999996 356665 5688999999999988777754210
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
.. .++|... +|.
T Consensus 620 v~-----~v~~~~~--------------------------~g~------------------------------------- 631 (793)
T PLN00181 620 IC-----CVQFPSE--------------------------SGR------------------------------------- 631 (793)
T ss_pred eE-----EEEEeCC--------------------------CCC-------------------------------------
Confidence 01 1122100 000
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~-~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
.++++..+|.|++||+.+.+ ++..+.+|..+|.+++|. ++.+|+|++.||+ |+|||
T Consensus 632 ---------------------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd 688 (793)
T PLN00181 632 ---------------------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWD 688 (793)
T ss_pred ---------------------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEe
Confidence 12345678999999998765 678889999999999997 7889999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+.....+. ....+..+ .|+. ..+..++|+|++++||+++.|++|+||+....
T Consensus 689 ~~~~~~~~--------~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 689 LSMSISGI--------NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCcccc--------CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 97541100 01234455 4554 35899999999999999999999999998654
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.72 E-value=1.5e-15 Score=159.42 Aligned_cols=238 Identities=14% Similarity=0.202 Sum_probs=177.7
Q ss_pred eeEEeeeecccCC-------------CCCC-cEEEEEccCCeEEEEecCC--C---ceeEeeeeecCCEEEEEEecCCCC
Q 003336 2 VLWAGFDKLESEA-------------GATR-RVLLLGYRSGFQVWDVEEA--D---NVHDLVSRYDGPVSFMQMLPRPIT 62 (828)
Q Consensus 2 v~w~~fd~l~~~~-------------~~~~-~vLl~Gy~~G~qVWdv~~~--~---~~~ellS~hdG~V~~v~~lP~p~~ 62 (828)
|-|-.|-+.+.+. .|.. .|-..|.+|-..||++... . .+.+.+..|.|=+.|++|+++..
T Consensus 80 IvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~- 158 (343)
T KOG0286|consen 80 IVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH- 158 (343)
T ss_pred EEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc-
Confidence 5566666554443 2343 4455667888999999854 1 24445677899999999986421
Q ss_pred cccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEE
Q 003336 63 SKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYS 141 (828)
Q Consensus 63 ~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~s 141 (828)
+| +++ -+.|..+||+++|+.+..+.- ..-|.+
T Consensus 159 -------------il---T~S-------------------------------GD~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 159 -------------IL---TGS-------------------------------GDMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred -------------eE---ecC-------------------------------CCceEEEEEcccceEEEEecCCcccEEE
Confidence 22 211 117899999999999999875 568999
Q ss_pred EEEc---CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCC
Q 003336 142 VRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNP 217 (828)
Q Consensus 142 V~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp 217 (828)
+.++ .+.++. +-|+..++||++.+.+.+++.+|.. .+|.+. |-
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes------------DINsv~-------ff-------------- 238 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES------------DINSVR-------FF-------------- 238 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEeeccccc------------ccceEE-------Ec--------------
Confidence 9996 355554 6788999999999999999988742 112221 21
Q ss_pred cccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCccccc
Q 003336 218 QHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDA 297 (828)
Q Consensus 218 ~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~ 297 (828)
|++ -.|+++
T Consensus 239 -----------------------------------------------------P~G------------------~afatG 247 (343)
T KOG0286|consen 239 -----------------------------------------------------PSG------------------DAFATG 247 (343)
T ss_pred -----------------------------------------------------cCC------------------Ceeeec
Confidence 110 025667
Q ss_pred CCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH--~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+.|++.++||++..+.++.|... ..+|++++||-+|+||..|-.|.+ ++|||...+ ++.-.|.
T Consensus 248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~--------------e~vg~L~ 312 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKG--------------ERVGVLA 312 (343)
T ss_pred CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeecccc--------------ceEEEee
Confidence 88999999999999999999833 368999999999999999999987 899999876 4445553
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
||.+ +|.++..+|||.-|++||-|.+++||.
T Consensus 313 -GHeN-RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 -GHEN-RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -ccCC-eeEEEEECCCCcEEEecchhHheeecC
Confidence 6654 599999999999999999999999994
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.9e-16 Score=174.51 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=163.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
+.|+|||..|...|+++.. .-||++-+|= ++.+++ +.|.+|+||+..|+++++++..|++-.
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI-------------- 100 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI-------------- 100 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce--------------
Confidence 6799999999999999987 4589988884 566766 456699999999999999999986411
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
|.||.. |+ ++
T Consensus 101 -----R~iavH-------------Pt-~P--------------------------------------------------- 110 (794)
T KOG0276|consen 101 -----RSIAVH-------------PT-LP--------------------------------------------------- 110 (794)
T ss_pred -----eeeeec-------------CC-CC---------------------------------------------------
Confidence 222221 11 00
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEe
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFK 350 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWd 350 (828)
-+.++++|-+|++||.+.. .+..+|.+|++-|.+|+|+| |-..+|+||-|+| |+||.
T Consensus 111 --------------------~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWs 169 (794)
T KOG0276|consen 111 --------------------YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWS 169 (794)
T ss_pred --------------------eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEE
Confidence 0123456789999999875 68889999999999999999 6779999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCCc-
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT- 427 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~~- 427 (828)
+... ...++|. ||.. .|++|+|=+ |--+|++|++|.|++|||+.+..+..++.+|+++..-
T Consensus 170 lgs~--------------~~nfTl~-gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 170 LGSP--------------HPNFTLE-GHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cCCC--------------CCceeee-cccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 8754 3456775 6654 399999976 5579999999999999999999999999999986543
Q ss_pred -cc-------CCCCccceecCCCCCCC
Q 003336 428 -KH-------GAMAKSGVRWPPNLGLQ 446 (828)
Q Consensus 428 -~~-------~~~~~~~~r~~~~s~~~ 446 (828)
|| .+.-+.++|.|..++..
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCccee
Confidence 22 33445667777766654
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.72 E-value=2e-15 Score=157.77 Aligned_cols=225 Identities=12% Similarity=0.225 Sum_probs=160.4
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
...|..+++..+++||++. ++....+-.|-.-|-+++|.|+.. - +|+++
T Consensus 76 ~~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~-------------q---ivSGS-------------- 124 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNR-------------Q---IVSGS-------------- 124 (315)
T ss_pred ceEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCCCc-------------e---eecCC--------------
Confidence 5667777788899999997 577777778999999999987521 1 24432
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC--CCCEEEEEEcCC----EEEE-EeCCEEEEEECCCCceEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSR----VVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S~r----iLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
-++||++|+...+........ +..|..|+|+++ +|+. +.|+++++||+.+.+..++
T Consensus 125 -----------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 125 -----------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred -----------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 128999999986654444443 678999999743 4443 6788999999999988777
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+.+|.. + .+.+++ + | +|.
T Consensus 188 ~~gh~~---~---------v~t~~v-------S-------------p--------------DGs---------------- 205 (315)
T KOG0279|consen 188 FIGHSG---Y---------VNTVTV-------S-------------P--------------DGS---------------- 205 (315)
T ss_pred cccccc---c---------EEEEEE-------C-------------C--------------CCC----------------
Confidence 665521 1 111221 1 1 111
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
..++++.+|.+.+||+..++.+.+|. |..+|.+++|+
T Consensus 206 ------------------------------------------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 206 ------------------------------------------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred ------------------------------------------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 12346789999999999999988875 67899999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec---CC--c--cccEEEEEEccCCCEEEEEeCCCc
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GL--T--NAVIQDISFSDDSNWIMISSSRGT 403 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R---G~--t--~a~I~sIaFSpDg~~LAs~S~DGT 403 (828)
|+--.|+.|-.. .|+|||+.+.. .+..|+- |. . ...-.+++||+||+.|.++-.|+.
T Consensus 243 pnrywL~~at~~--sIkIwdl~~~~--------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 243 PNRYWLCAATAT--SIKIWDLESKA--------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred CCceeEeeccCC--ceEEEeccchh--------------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 999988887644 49999998761 1111110 11 0 112467899999999999999999
Q ss_pred EEEEecCC
Q 003336 404 SHLFAINP 411 (828)
Q Consensus 404 VhIwdl~~ 411 (828)
|++|.+..
T Consensus 307 irv~qv~~ 314 (315)
T KOG0279|consen 307 IRVWQVAK 314 (315)
T ss_pred EEEEEeec
Confidence 99999864
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.71 E-value=1.9e-17 Score=176.26 Aligned_cols=214 Identities=15% Similarity=0.264 Sum_probs=157.1
Q ss_pred EccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCC
Q 003336 24 GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTS 103 (828)
Q Consensus 24 Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~ 103 (828)
--++.++|||.++. .+..++..|.|.|-|+++-- | ++++++
T Consensus 214 lrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd~---------------r---viisGS-------------------- 254 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYDE---------------R---VIVSGS-------------------- 254 (499)
T ss_pred cccCceEEeccccH-HHHHhhhcCCCcEEeeeccc---------------e---EEEecC--------------------
Confidence 33567899999984 57788889999999998731 2 234432
Q ss_pred CCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEEE-eCCEEEEEECCCCce---EEEEEcCCCcc
Q 003336 104 ANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEI---EYAILTNPIVM 178 (828)
Q Consensus 104 ~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAVs-~~~~I~IwDl~t~~~---l~tL~t~p~~~ 178 (828)
++.||++||..||++++++-+ -..|..++|+..+++.+ -|..|.+||+..... .+.|.+|-
T Consensus 255 -----------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr--- 320 (499)
T KOG0281|consen 255 -----------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--- 320 (499)
T ss_pred -----------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh---
Confidence 227999999999999999866 45899999997777764 567999999875431 11122220
Q ss_pred CCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCcc
Q 003336 179 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 258 (828)
Q Consensus 179 ~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g 258 (828)
..+|.+. |.
T Consensus 321 ---------AaVNvVd-------fd------------------------------------------------------- 329 (499)
T KOG0281|consen 321 ---------AAVNVVD-------FD------------------------------------------------------- 329 (499)
T ss_pred ---------hheeeec-------cc-------------------------------------------------------
Confidence 0001000 00
Q ss_pred ceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEE
Q 003336 259 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVT 338 (828)
Q Consensus 259 ~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLAT 338 (828)
. ..+++++.|.+|++||+.+++.+.++.+|.-.|.|+.+ .|+++++
T Consensus 330 -------------------------~-------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS 375 (499)
T KOG0281|consen 330 -------------------------D-------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS 375 (499)
T ss_pred -------------------------c-------ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEe
Confidence 0 01234567889999999999999999999999999876 7999999
Q ss_pred EecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 339 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 339 aS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
||.|.+ |++||+..| .+|..| .||. .-|.+|-|. .+.|++|.-||+|+|||+.+.-.
T Consensus 376 GSSDnt-IRlwdi~~G--------------~cLRvL-eGHE-eLvRciRFd--~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 376 GSSDNT-IRLWDIECG--------------ACLRVL-EGHE-ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cCCCce-EEEEecccc--------------HHHHHH-hchH-Hhhhheeec--CceeeeccccceEEEEecccccC
Confidence 999987 999999876 344344 4553 238888884 57999999999999999987533
No 31
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=9.8e-17 Score=171.94 Aligned_cols=255 Identities=16% Similarity=0.249 Sum_probs=174.9
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCc-cccCC----CEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDK-FAEVR----PLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~-F~~~r----PLLavv~~~~~~g~~~~~ 92 (828)
..|+..++++.++|||+... ++...+..|+|.|+-+.+--.- .-..++|. .+.+. |+=.+.+.+...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~~~-~~tvgdDKtvK~wk~~~~p~~tilg~s~~~------ 151 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQTS-FFTVGDDKTVKQWKIDGPPLHTILGKSVYL------ 151 (433)
T ss_pred hhhhccccCceEEEEehhhh-hhhheeecccCceeeEEecccc-eEEecCCcceeeeeccCCcceeeecccccc------
Confidence 67888889999999999874 5777888899999998874311 11111111 00000 221122211110
Q ss_pred CCcccccCCCCCCCCCCCCCCcCC--CEEEEEECCCCcEEEEEeCC-CCEEEEEEc---CCEEEEE-eCCEEEEEECCCC
Q 003336 93 DGLATACNGTSANYHDLGNGSSVP--TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS---SRVVAIC-QAAQVHCFDAATL 165 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~--~tVrlWDL~Tg~~V~tL~f~-s~V~sV~~S---~riLAVs-~~~~I~IwDl~t~ 165 (828)
+-+|.-....+.. -.|.|||..-...+.++... ..|.+|.|| ..+|++| .++.|.+||+++.
T Consensus 152 -----------gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 152 -----------GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred -----------ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 1111111111121 34999999999999999885 479999998 5788885 7889999999998
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
..++.+..- ...|.|+.+| =||
T Consensus 221 ~Pl~KVi~~-------------mRTN~IswnP--eaf------------------------------------------- 242 (433)
T KOG0268|consen 221 SPLKKVILT-------------MRTNTICWNP--EAF------------------------------------------- 242 (433)
T ss_pred Cccceeeee-------------ccccceecCc--ccc-------------------------------------------
Confidence 877766432 1122232211 011
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCe
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPI 324 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pI 324 (828)
.|+.++.|-.+..+|+... .++..++.|.+.|
T Consensus 243 -----------------------------------------------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 243 -----------------------------------------------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred -----------------------------------------------ceeeccccccceehhhhhhcccchhhcccceeE
Confidence 1344567778888998864 5788899999999
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
..+.|||.|+-++|||.|.+ ||||....+. -+-+|-.+|- ..|.++.||.|++|+.+||+|+.|
T Consensus 276 ~dVdfsptG~EfvsgsyDks-IRIf~~~~~~------------SRdiYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKS-IRIFPVNHGH------------SRDIYHTKRM---QHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred EEeccCCCcchhccccccce-EEEeecCCCc------------chhhhhHhhh---heeeEEEEeccccEEEecCCCcce
Confidence 99999999999999999987 9999987651 1334444442 249999999999999999999999
Q ss_pred EEEecCCC
Q 003336 405 HLFAINPL 412 (828)
Q Consensus 405 hIwdl~~~ 412 (828)
++|.-...
T Consensus 340 RlWka~As 347 (433)
T KOG0268|consen 340 RLWKAKAS 347 (433)
T ss_pred eeeecchh
Confidence 99998653
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.3e-16 Score=180.54 Aligned_cols=265 Identities=15% Similarity=0.260 Sum_probs=172.7
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+.|..++.+..+| +|+||.-- +-+.+-+-.||||||.+.|=|. .||. |++|- |
T Consensus 19 P~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~--------------qplF--VSGGD--------D- 72 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPT--------------QPLF--VSGGD--------D- 72 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCC--------------CCeE--EecCC--------c-
Confidence 5689999999888 89999976 4566667789999999988663 3554 44321 2
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
-+|++|+.++.+|+-+|.- -.-|+.+.|. +-+|..+.|.+|+||+-.+.+++-+
T Consensus 73 ----------------------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 73 ----------------------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred ----------------------cEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE
Confidence 6899999999999998864 5689999996 3455556778999999999999999
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeC-CCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSG-SPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~-~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
+.+|.--. |+- .|.+ .+++++ +|-+.+|.-|.. +
T Consensus 131 ltGHnHYV--------------McA-----qFhptEDlIVS-------------------aSLDQTVRVWDi-------s 165 (1202)
T KOG0292|consen 131 LTGHNHYV--------------MCA-----QFHPTEDLIVS-------------------ASLDQTVRVWDI-------S 165 (1202)
T ss_pred EecCceEE--------------Eee-----ccCCccceEEE-------------------ecccceEEEEee-------c
Confidence 99884211 110 0110 000000 011112211110 0
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
||+ .++-++.+ .++... | ..+..-++--..--+...+.+|...|+.++|
T Consensus 166 GLR-------------------kk~~~pg~-~e~~~~-~----------~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 166 GLR-------------------KKNKAPGS-LEDQMR-G----------QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred chh-------------------ccCCCCCC-chhhhh-c----------cccchhhcCCcCeeeeeeecccccccceEEe
Confidence 110 00000000 000000 0 0000001100001123457799999999999
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
.|.--++++|++|.. |++|..... +.+.+-++ |||.+ .|.++-|.|.-.+|.+.|.|++|+|||+
T Consensus 215 hpTlpliVSG~DDRq-VKlWrmnet------------KaWEvDtc-rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQ-VKLWRMNET------------KAWEVDTC-RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cCCcceEEecCCcce-eeEEEeccc------------cceeehhh-hcccC-CcceEEecCccceeEecCCCccEEEEec
Confidence 999999999999965 999998754 34555555 78875 5999999999999999999999999999
Q ss_pred CCCCCceeec
Q 003336 410 NPLGGSVNFQ 419 (828)
Q Consensus 410 ~~~gg~~~~~ 419 (828)
..-.+..+|+
T Consensus 280 ~kRt~v~tfr 289 (1202)
T KOG0292|consen 280 TKRTSVQTFR 289 (1202)
T ss_pred ccccceeeee
Confidence 9877766664
No 33
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.70 E-value=1.2e-15 Score=177.67 Aligned_cols=226 Identities=16% Similarity=0.229 Sum_probs=171.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++...++..++|||+.+ +.+..++-.|.+.|+++.+.+. ++ ++++
T Consensus 262 ~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~~~~~~~~----------------~~--~sgs-------------- 308 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVRCLTIDPF----------------LL--VSGS-------------- 308 (537)
T ss_pred CEEEEEecCCcEEeEecCC-CcEEEEecCCCceEEEEEccCc----------------eE--eecc--------------
Confidence 4445555588899999887 7898999999999999987642 11 2221
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcCCEEE-EEeCCEEEEEECCCCceEEEEEcCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVA-ICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~riLA-Vs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.+++|++|++.++.+++++. +..+|++|.++..+++ +++++.|.+||+.++++++++.+|.
T Consensus 309 -----------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 309 -----------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred -----------------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 23899999999999999999 8899999999966555 5788999999999999999998874
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
... .+ |++..+ .
T Consensus 372 ~~V--------------~s-----l~~~~~---------------------------------------~---------- 383 (537)
T KOG0274|consen 372 GRV--------------YS-----LIVDSE---------------------------------------N---------- 383 (537)
T ss_pred ceE--------------EE-----EEecCc---------------------------------------c----------
Confidence 210 00 111100 0
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCC
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSPdG~ 334 (828)
...++..|+.|++||+.++ +++.++..|..-+..+. ..++
T Consensus 384 -------------------------------------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~ 424 (537)
T KOG0274|consen 384 -------------------------------------RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDN 424 (537)
T ss_pred -------------------------------------eEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccc
Confidence 0112345689999999999 99999999999886544 5789
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+|++++.||+ |++||...+ .++.++.-.+. ..|..+++. ...+++++.||++++||+.....
T Consensus 425 ~Lvs~~aD~~-Ik~WD~~~~--------------~~~~~~~~~~~-~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 425 FLVSSSADGT-IKLWDAEEG--------------ECLRTLEGRHV-GGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeEecccccc-EEEeecccC--------------ceeeeeccCCc-ccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 9999999998 999999886 34445532222 348888877 56788999999999999988755
Q ss_pred ceee
Q 003336 415 SVNF 418 (828)
Q Consensus 415 ~~~~ 418 (828)
...+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 5444
No 34
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=2e-16 Score=162.84 Aligned_cols=184 Identities=21% Similarity=0.342 Sum_probs=147.4
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+|..|.+.-++|||++...+..+-++.|.|.||.+-++-. |. .+|- + +
T Consensus 113 ~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e--------D~-----~iLS--S--a------------- 162 (334)
T KOG0278|consen 113 NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE--------DK-----CILS--S--A------------- 162 (334)
T ss_pred hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc--------Cc-----eEEe--e--c-------------
Confidence 678888888889999999888788888999999999988731 11 1221 1 1
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.+++||+||.+||..+++|.|+++|.++..+ +++|.++....|.+||+.++..+.....-
T Consensus 163 -----------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P- 224 (334)
T KOG0278|consen 163 -----------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP- 224 (334)
T ss_pred -----------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-
Confidence 2388999999999999999999999999996 89999999999999999999877665431
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
| ++ +.++ ++
T Consensus 225 ----~--------nV----------~SAS----------L~--------------------------------------- 233 (334)
T KOG0278|consen 225 ----C--------NV----------ESAS----------LH--------------------------------------- 233 (334)
T ss_pred ----c--------cc----------cccc----------cc---------------------------------------
Confidence 1 00 0000 00
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEEcCCCC
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSGI 334 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f-~aH~~pIsaLaFSPdG~ 334 (828)
|+. ..|+.++.++.++.||..++..+..+ ++|-+||.||.|+|||.
T Consensus 234 ---------------P~k------------------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 234 ---------------PKK------------------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ---------------CCC------------------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 110 13556788999999999999999887 89999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~ 354 (828)
+.|+||.||+ |+||.+.++
T Consensus 281 ~yAsGSEDGT-irlWQt~~~ 299 (334)
T KOG0278|consen 281 LYASGSEDGT-IRLWQTTPG 299 (334)
T ss_pred eeeccCCCce-EEEEEecCC
Confidence 9999999999 899999876
No 35
>PTZ00421 coronin; Provisional
Probab=99.70 E-value=1.3e-14 Score=168.10 Aligned_cols=221 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred CeEEEEecCCCceeE---eeeeecCCEEEEEEec-CCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCC
Q 003336 28 GFQVWDVEEADNVHD---LVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTS 103 (828)
Q Consensus 28 G~qVWdv~~~~~~~e---llS~hdG~V~~v~~lP-~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~ 103 (828)
|+.|+.++..|.... ++..|.++|.++++.| ++ .+|+.++.
T Consensus 52 g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~--------------~~LaSgS~--------------------- 96 (493)
T PTZ00421 52 STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP--------------QKLFTASE--------------------- 96 (493)
T ss_pred ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC--------------CEEEEEeC---------------------
Confidence 444544444343332 5667999999999987 21 24554432
Q ss_pred CCCCCCCCCCcCCCEEEEEECCCCc-------EEEEEe-CCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 104 ANYHDLGNGSSVPTVVHFYSLRSQS-------YVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 104 ~~~h~~g~~~~~~~tVrlWDL~Tg~-------~V~tL~-f~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+++|++||+.++. .+.+|. +...|..|+|+ ..+|++ +.+++|+|||+.+++.+.++
T Consensus 97 ------------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 97 ------------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred ------------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 2789999998763 455665 45689999997 246665 66889999999999888777
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
..|... + ..|+|.. +|.
T Consensus 165 ~~h~~~---------------V----~sla~sp---------------------------dG~----------------- 181 (493)
T PTZ00421 165 KCHSDQ---------------I----TSLEWNL---------------------------DGS----------------- 181 (493)
T ss_pred cCCCCc---------------e----EEEEEEC---------------------------CCC-----------------
Confidence 665321 0 1123321 011
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEc
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFD 330 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~p-IsaLaFS 330 (828)
.+++++.||.|+|||+.+++.+..+.+|.+. +..+.|.
T Consensus 182 -----------------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 182 -----------------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 1234567899999999999999999999875 4567899
Q ss_pred CCCCEEEEEe----cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEE
Q 003336 331 PSGILLVTAS----VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSH 405 (828)
Q Consensus 331 PdG~lLATaS----~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVh 405 (828)
+++.+|+|++ .|++ |+|||++... .......+ .....+....|++|+++|++++ .|++|+
T Consensus 221 ~~~~~ivt~G~s~s~Dr~-VklWDlr~~~-----------~p~~~~~~---d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQ-IMLWDTRKMA-----------SPYSTVDL---DQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCeEEEEecCCCCCCe-EEEEeCCCCC-----------CceeEecc---CCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 9988888765 3666 8999997640 01111121 2223366778999999999988 599999
Q ss_pred EEecCCCCC
Q 003336 406 LFAINPLGG 414 (828)
Q Consensus 406 Iwdl~~~gg 414 (828)
+|++.....
T Consensus 286 iwdl~~~~~ 294 (493)
T PTZ00421 286 CFELMNERL 294 (493)
T ss_pred EEEeeCCce
Confidence 999987543
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=6.5e-16 Score=177.11 Aligned_cols=227 Identities=19% Similarity=0.260 Sum_probs=158.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEEEe-CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~---riLAVs~-~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
..+.|||.++.+.++.|- ++..|.+++|-+ +.|||+. ...+++||..++.+. .+.+|....
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~v------------- 368 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAV------------- 368 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhe-------------
Confidence 569999999999998874 688999999964 7888865 468999999999886 666775321
Q ss_pred eeeec----cceEEEeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccce--eceeEeccCccceeec
Q 003336 192 PLAVG----PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL--AAGIVNLGDLGYKKLS 263 (828)
Q Consensus 192 piAlg----~r~LAya~~~--~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l--asGl~~lGd~g~~~ls 263 (828)
++|. .-|||.++.+ ++.| ++-..+++.+ +.+ .|+.
T Consensus 369 -lSL~~~~~g~llat~sKD~svilW---------------------------r~~~~~~~~~~~a~~---~gH~------ 411 (775)
T KOG0319|consen 369 -LSLDVWSSGDLLATGSKDKSVILW---------------------------RLNNNCSKSLCVAQA---NGHT------ 411 (775)
T ss_pred -eeeeecccCcEEEEecCCceEEEE---------------------------EecCCcchhhhhhhh---cccc------
Confidence 2222 2466666432 2222 0000111100 000 0000
Q ss_pred cccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-----EEE----EeccCCCCeEEEEEcCCCC
Q 003336 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----VIA----QFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 264 ~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~-----~i~----~f~aH~~pIsaLaFSPdG~ 334 (828)
+++... ...+ .| ..-|++++.|+++++|++...+ ++. +..+|...|+||+.+|+-+
T Consensus 412 -----------~svgav-a~~~-~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk 476 (775)
T KOG0319|consen 412 -----------NSVGAV-AGSK-LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK 476 (775)
T ss_pred -----------ccccee-eecc-cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence 000000 0000 01 1235678899999999997621 112 3469999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
++||||.|.+ .+||++... +++..| +||+. .|+|+.|+|..+.||++|.|+||+||.|+++.+
T Consensus 477 LiAT~SqDkt-aKiW~le~~--------------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 477 LIATGSQDKT-AKIWDLEQL--------------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred eEEecccccc-eeeecccCc--------------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEecccee
Confidence 9999999988 799999853 566666 68874 499999999999999999999999999999999
Q ss_pred ceeeccCCCCCC
Q 003336 415 SVNFQPTDANFT 426 (828)
Q Consensus 415 ~~~~~~H~~~~~ 426 (828)
.-+|.+|+...-
T Consensus 540 lkT~eGH~~aVl 551 (775)
T KOG0319|consen 540 LKTFEGHTSAVL 551 (775)
T ss_pred eeeecCccceeE
Confidence 999999976544
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=177.11 Aligned_cols=231 Identities=13% Similarity=0.130 Sum_probs=172.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEe-eeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDL-VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~el-lS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.++...++..+++||+... .+... +..|.|.|..++|... .++| ++++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~-~~i~~~l~GH~g~V~~l~~~~~--------------~~~l--vsgS------------- 268 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG-YLILTRLVGHFGGVWGLAFPSG--------------GDKL--VSGS------------- 268 (537)
T ss_pred CeEEecCCCceeEEeecccc-eEEEeeccCCCCCceeEEEecC--------------CCEE--EEEe-------------
Confidence 45666666777889999874 34344 6789999999998531 1233 3322
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
.+.|+++||+.+|+|+++|.. .+.|..+..-+.+++. +.|.+|++||+.++.+++++.+|
T Consensus 269 ------------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 269 ------------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred ------------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccc
Confidence 128899999999999999994 6677777776655554 68999999999999999998765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
..+ + +-+.+. +
T Consensus 331 ~~~---------------V----~~v~~~-----------------------------~--------------------- 341 (537)
T KOG0274|consen 331 TGP---------------V----NCVQLD-----------------------------E--------------------- 341 (537)
T ss_pred ccc---------------E----EEEEec-----------------------------C---------------------
Confidence 321 1 000110 0
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~ 334 (828)
..++++..||+|+|||+.++++++++++|+..|.+|.|++. .
T Consensus 342 -------------------------------------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 342 -------------------------------------PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred -------------------------------------CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c
Confidence 01234567889999999999999999999999999999877 8
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.+.+||.|++ |++||+.+. ..++++| .+++ ..+.+ +...+++|.+++.|++|++||++.+++
T Consensus 384 ~~~Sgs~D~~-IkvWdl~~~-------------~~c~~tl-~~h~-~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 384 RLLSGSLDTT-IKVWDLRTK-------------RKCIHTL-QGHT-SLVSS--LLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred eEEeeeeccc-eEeecCCch-------------hhhhhhh-cCCc-ccccc--cccccceeEeccccccEEEeecccCce
Confidence 9999999987 999999874 1345555 3443 33544 345678999999999999999999988
Q ss_pred ceeeccC
Q 003336 415 SVNFQPT 421 (828)
Q Consensus 415 ~~~~~~H 421 (828)
...+.++
T Consensus 446 ~~~~~~~ 452 (537)
T KOG0274|consen 446 LRTLEGR 452 (537)
T ss_pred eeeeccC
Confidence 8888873
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.69 E-value=1.4e-15 Score=160.19 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=174.1
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.-++..|++.-+-+|++..--+-.-.+..|.|.|--+.+.++. ..|.-|+
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--------------s~i~S~g---------------- 109 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--------------SHILSCG---------------- 109 (338)
T ss_pred CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--------------CEEEEec----------------
Confidence 3455677888899999864222234566899999988887542 1232232
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCE-EEEEEc---CCEEEE-EeCCEEEEEECCCCceEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI-YSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V-~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL~ 172 (828)
.+++|+.||.+||++++.++....+ .++.-+ ..+|.. ..|+++++||+++-+.++++.
T Consensus 110 -----------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 110 -----------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred -----------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 1289999999999999988876544 444433 345554 457899999999877766653
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.- |...|+ +|.. .+.+
T Consensus 173 ~k---------------yqltAv-----~f~d--------------------------------------~s~q------ 188 (338)
T KOG0265|consen 173 NK---------------YQLTAV-----GFKD--------------------------------------TSDQ------ 188 (338)
T ss_pred cc---------------eeEEEE-----Eecc--------------------------------------cccc------
Confidence 21 111121 1110 0000
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
..++.-|+.|++||+.....+.++++|..+|+.|..+|+
T Consensus 189 -----------------------------------------v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~ 227 (338)
T KOG0265|consen 189 -----------------------------------------VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY 227 (338)
T ss_pred -----------------------------------------eeeccccCceeeeccccCcceEEeecccCceeeEEeccC
Confidence 112345788999999999999999999999999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc--EEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~--I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|.+|.+-+-|.+ +++||+++..+ ..+++..+..+..+-. ...++|||+++++.++|.|+.++|||..
T Consensus 228 gs~llsnsMd~t-vrvwd~rp~~p----------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 228 GSFLLSNSMDNT-VRVWDVRPFAP----------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred CCccccccccce-EEEEEecccCC----------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 999999999987 89999998622 2344555543332222 5788999999999999999999999998
Q ss_pred CCCCceeeccCCCCCC
Q 003336 411 PLGGSVNFQPTDANFT 426 (828)
Q Consensus 411 ~~gg~~~~~~H~~~~~ 426 (828)
.-+....+-+|...+.
T Consensus 297 ~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 297 SRRILYKLPGHYGSVN 312 (338)
T ss_pred cccEEEEcCCcceeEE
Confidence 7777778888865443
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.69 E-value=1e-16 Score=173.88 Aligned_cols=223 Identities=18% Similarity=0.328 Sum_probs=166.8
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
|++|+.++.+-|-+|+.... +...++-.||.+||+++++++. .-+|.++.
T Consensus 109 RRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g---------------~wmiSgD~-------------- 158 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNG---------------TWMISGDK-------------- 158 (464)
T ss_pred ceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCC---------------CEEEEcCC--------------
Confidence 67777777777999998653 4566777899999999999753 11223321
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CC-CCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FR-SPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~-s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~ 172 (828)
.+.||+|+..-. .|+.++ +. ..|.+++|+ .+++..+.|++|+|||....+....|.
T Consensus 159 ------------------gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 159 ------------------GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred ------------------CceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 178999998544 355554 33 689999997 567777888999999999887766665
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
+|. +.+ +.+++. |+ |
T Consensus 220 GHg--------------wdV-----ksvdWH-------------P~--------------------------k------- 234 (464)
T KOG0284|consen 220 GHG--------------WDV-----KSVDWH-------------PT--------------------------K------- 234 (464)
T ss_pred cCC--------------CCc-----ceeccC-------------Cc--------------------------c-------
Confidence 541 111 111111 10 0
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
+.+++++.|..|++||-+++.+++++.+|+..|.++.|+|+
T Consensus 235 ---------------------------------------gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 235 ---------------------------------------GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN 275 (464)
T ss_pred ---------------------------------------ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence 12344566779999999999999999999999999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~ 410 (828)
|.+|+|+|.|. .+++||+++- ..|+.+ |||. ..|.++.|+| .-.+|.+++.||.|..|.+.
T Consensus 276 ~N~Llt~skD~-~~kv~DiR~m--------------kEl~~~-r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 276 GNWLLTGSKDQ-SCKVFDIRTM--------------KELFTY-RGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CCeeEEccCCc-eEEEEehhHh--------------HHHHHh-hcch-hhheeeccccccccceeeccCCCceEEEecc
Confidence 99999999996 4999999853 234444 6665 3599999999 66789999999999999987
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=3.5e-15 Score=171.21 Aligned_cols=289 Identities=15% Similarity=0.201 Sum_probs=193.5
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..++|++-.+..+.+||.++..-+..+++ -.+.|..++++-. .+ ..|||++.+
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG-~ndEI~Dm~~lG~-------e~------~~laVATNs------------- 345 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVG-YNDEILDMKFLGP-------EE------SHLAVATNS------------- 345 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcC-CchhheeeeecCC-------cc------ceEEEEeCC-------------
Confidence 37888999999999999887543344444 4567788888731 11 257777642
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEE-c-CCEEEEE-eCCEEEEEECCCCc----eEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-S-SRVVAIC-QAAQVHCFDAATLE----IEY 169 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S-~riLAVs-~~~~I~IwDl~t~~----~l~ 169 (828)
..+|+|++.+-.+--.-.+...|.++.. + +.+|+.+ -|.++.+|.+.... ++.
T Consensus 346 --------------------~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 346 --------------------PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred --------------------CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 4599999998887633345668888883 3 5577764 46789999774332 333
Q ss_pred EEEcCCCccCCCCCCCCCcccceeee---ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAV---GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAl---g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
...+|.+. ++.+|. ++.+|+..+.+ .+++-|...-+|.
T Consensus 406 ~~~gH~~s------------vgava~~~~~asffvsvS~D---------------------------~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 406 QANGHTNS------------VGAVAGSKLGASFFVSVSQD---------------------------CTLKLWDLPKSKE 446 (775)
T ss_pred hhcccccc------------cceeeecccCccEEEEecCC---------------------------ceEEEecCCCccc
Confidence 33444332 122222 22455544322 1221111111111
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsa 326 (828)
-+.- +..-.+|........-+.+. .+|.. ..+++++.|.+.+||++.....+.+|.+|+..|.|
T Consensus 447 ~~~~--------~~~~~~~t~~aHdKdIN~Va-ia~nd-------kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 447 TAFP--------IVLTCRYTERAHDKDINCVA-IAPND-------KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred cccc--------ceehhhHHHHhhcccccceE-ecCCC-------ceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 1000 00001111111111112221 12221 25688999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI 406 (828)
+.|+|..++|||+|.|+| |+||.+.+. .++.+| .||+.+ |..++|-.+++.|+++++||-++|
T Consensus 511 V~Fs~~dq~laT~SgD~T-vKIW~is~f--------------SClkT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKT-VKIWSISTF--------------SCLKTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred EEeccccceeEeccCCce-EEEEEeccc--------------eeeeee-cCccce-eEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999998 899999986 577788 478765 999999999999999999999999
Q ss_pred EecCCCCCceeeccCCCC
Q 003336 407 FAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 407 wdl~~~gg~~~~~~H~~~ 424 (828)
|++.+..+..++..|.+.
T Consensus 574 Wnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDR 591 (775)
T ss_pred Eeccchhhhhhhhhccce
Confidence 999999999999999763
No 41
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=6.9e-16 Score=167.70 Aligned_cols=225 Identities=15% Similarity=0.245 Sum_probs=168.5
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+.+++|+.++++..++|+++. ......++.|.+.|.++++.-. . .++++++
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~------------~----~~vVsgs------------ 280 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS------------H----SRVVSGS------------ 280 (459)
T ss_pred CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc------------c----cceeecc------------
Confidence 348999999999999999997 4677888899999999987531 1 1244432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEE-eCCEEEEEECCCCceEEEEEcC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs-~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
.+.+|++||+....|.+++-+.+.+.+|.++...+..+ .+++|++||+++..+.+.+...
T Consensus 281 -------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g 341 (459)
T KOG0288|consen 281 -------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG 341 (459)
T ss_pred -------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecC
Confidence 23899999999999999999999999999985544443 6789999999998877776432
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
.. +..+.++ + +|-
T Consensus 342 g~-------------vtSl~ls--------------------~--------------~g~-------------------- 354 (459)
T KOG0288|consen 342 GR-------------VTSLDLS--------------------M--------------DGL-------------------- 354 (459)
T ss_pred cc-------------eeeEeec--------------------c--------------CCe--------------------
Confidence 10 0001100 0 000
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC----CCeEEEEEc
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFD 330 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~----~pIsaLaFS 330 (828)
.+.+...|.++.+.|+.+......|.|.. +..+.+.||
T Consensus 355 --------------------------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 355 --------------------------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --------------------------------------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 01112345689999999999888887542 458899999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|+|.|+|+||.||. |+||++.++ +++. .+.-...++.|.+++|+|-|+.|++++.++.+.+|.
T Consensus 397 pd~~YvaAGS~dgs-v~iW~v~tg------------KlE~--~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGS-VYIWSVFTG------------KLEK--VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCc-EEEEEccCc------------eEEE--EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999998 899999987 3333 443333333599999999999999999999999993
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.68 E-value=9.9e-16 Score=168.61 Aligned_cols=189 Identities=16% Similarity=0.239 Sum_probs=146.1
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEE-EEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~--riL-AVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
..+.++||+. +|.++.+|.+ +.+|+++++++ .+| +.+-|+++.+||..+++..+.+.-|..+
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~------------- 320 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP------------- 320 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------
Confidence 4589999997 6777888865 78999999983 444 4577899999999999877666544210
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
++.-.|. +
T Consensus 321 ---~lDVdW~------------------------------------------------------~--------------- 328 (524)
T KOG0273|consen 321 ---ALDVDWQ------------------------------------------------------S--------------- 328 (524)
T ss_pred ---ccceEEe------------------------------------------------------c---------------
Confidence 0000111 0
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
+..|++.+.+|.|+|+-+...+|+.+|.+|.++|.+|.|+|.|.+|+|||+|+| ++||.
T Consensus 329 --------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs 387 (524)
T KOG0273|consen 329 --------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWS 387 (524)
T ss_pred --------------------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeee
Confidence 012444567899999999999999999999999999999999999999999999 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC---------CEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---------NWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg---------~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
.... .....| ++|. ..|+.|.|||+| ..||+++.|+||++||+..+-+..+|..|
T Consensus 388 ~~~~--------------~~~~~l-~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 388 MGQS--------------NSVHDL-QAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred cCCC--------------cchhhh-hhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 7654 112233 2333 359999999976 45999999999999999998888899999
Q ss_pred CCCCC
Q 003336 422 DANFT 426 (828)
Q Consensus 422 ~~~~~ 426 (828)
+....
T Consensus 452 ~~pVy 456 (524)
T KOG0273|consen 452 QEPVY 456 (524)
T ss_pred CCceE
Confidence 87644
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=162.96 Aligned_cols=191 Identities=14% Similarity=0.215 Sum_probs=145.4
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 116 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~---riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
+++++|||+.||++..+|. +-..|..|++|. -++.++.+++|+|||+..-+.++..-+|-. +
T Consensus 172 DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------------~ 237 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------------G 237 (460)
T ss_pred CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------e
Confidence 4899999999999999998 678999999984 355667889999999998776655444310 0
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
. |+ -++.|
T Consensus 238 V---------~~---------------------------------------------------------------L~lhP 245 (460)
T KOG0285|consen 238 V---------YC---------------------------------------------------------------LDLHP 245 (460)
T ss_pred e---------EE---------------------------------------------------------------Eeccc
Confidence 0 11 00111
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
. ...+++++.|.+++|||++++..+..|.+|+.+|..|.|.|-.-.++|||.|++ |++||+
T Consensus 246 T------------------ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl 306 (460)
T KOG0285|consen 246 T------------------LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDL 306 (460)
T ss_pred c------------------ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeee
Confidence 0 001345667889999999999999999999999999999997778999999998 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCCcc
Q 003336 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTK 428 (828)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~~~ 428 (828)
..+ +...++. +....|.+++..|+-..+|++|.| .++-|++..+.-...+.+|...+..+
T Consensus 307 ~ag--------------kt~~tlt--~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl 366 (460)
T KOG0285|consen 307 RAG--------------KTMITLT--HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTL 366 (460)
T ss_pred ccC--------------ceeEeee--cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeee
Confidence 876 2333442 122349999999999999999988 58999998766666788888765543
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.5e-15 Score=171.21 Aligned_cols=230 Identities=16% Similarity=0.215 Sum_probs=170.1
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
=+|+.=|.+.++|||.++...+ +-+.-.+-|||..+|++. ..-++ ++. +|
T Consensus 27 w~la~LynG~V~IWnyetqtmV-ksfeV~~~PvRa~kfiaR--------------knWiv-~Gs---------DD----- 76 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQTMV-KSFEVSEVPVRAAKFIAR--------------KNWIV-TGS---------DD----- 76 (794)
T ss_pred eEEEeeecCeeEEEecccceee-eeeeecccchhhheeeec--------------cceEE-Eec---------CC-----
Confidence 3444555666999999973322 223334789999988863 12332 321 12
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCC-ceEEEEEc
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATL-EIEYAILT 173 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~-~~l~tL~t 173 (828)
..||+|+..|++.|+++.- +.-|++|+.. +-+|..+.|-.|++||-... .+.+++++
T Consensus 77 ------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 77 ------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred ------------------ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 6799999999999999985 5689999986 34555566678999998754 56777777
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|.-- .|. +|+-+
T Consensus 139 H~Hy--------------VMq-----v~fnP------------------------------------------------- 150 (794)
T KOG0276|consen 139 HEHY--------------VMQ-----VAFNP------------------------------------------------- 150 (794)
T ss_pred cceE--------------EEE-----EEecC-------------------------------------------------
Confidence 6421 121 12210
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
.. +.+|++++-|++|+||.+.+..+..+|++|...|+|++|-+-|
T Consensus 151 ------------------kD-----------------~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 151 ------------------KD-----------------PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred ------------------CC-----------------ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 00 1246677789999999999999999999999999999998865
Q ss_pred --CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 334 --ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 334 --~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
-+|+||++|-+ |+|||..+. .++.+| .||++ .|..++|.|.=.+|++||.|||++||.-.+
T Consensus 196 dkpylIsgaDD~t-iKvWDyQtk--------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 196 DKPYLISGADDLT-IKVWDYQTK--------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred CcceEEecCCCce-EEEeecchH--------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 59999999965 999999875 455566 47764 599999999999999999999999999988
Q ss_pred CCCce
Q 003336 412 LGGSV 416 (828)
Q Consensus 412 ~gg~~ 416 (828)
|..+-
T Consensus 259 y~lE~ 263 (794)
T KOG0276|consen 259 YKLEK 263 (794)
T ss_pred eehhh
Confidence 76543
No 45
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.1e-15 Score=159.36 Aligned_cols=219 Identities=19% Similarity=0.289 Sum_probs=146.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.+++..|.++.++++|++. + ....+..|+++|+|+...+.- . .|++++
T Consensus 66 ~~~~~G~~dg~vr~~Dln~-~-~~~~igth~~~i~ci~~~~~~--------------~--~vIsgs-------------- 113 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNT-G-NEDQIGTHDEGIRCIEYSYEV--------------G--CVISGS-------------- 113 (323)
T ss_pred ceEEEeccCceEEEEEecC-C-cceeeccCCCceEEEEeeccC--------------C--eEEEcc--------------
Confidence 4666667777777777775 2 345666677777777776420 0 123344
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEcCCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPI 176 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~ 176 (828)
|+++|+|||.+....+.++.-..+|+++..++.+|+| +.+.+|.+||++++...++..+++.
T Consensus 114 -----------------WD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l 176 (323)
T KOG1036|consen 114 -----------------WDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL 176 (323)
T ss_pred -----------------cCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc
Confidence 4489999999997777777777899999999888888 8889999999999987777666543
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccC
Q 003336 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 256 (828)
Q Consensus 177 ~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd 256 (828)
+. .+-.+++-|..=+|+ ..+..||++.+.+.+++-
T Consensus 177 ky----------qtR~v~~~pn~eGy~----~sSieGRVavE~~d~s~~------------------------------- 211 (323)
T KOG1036|consen 177 KY----------QTRCVALVPNGEGYV----VSSIEGRVAVEYFDDSEE------------------------------- 211 (323)
T ss_pred ee----------EEEEEEEecCCCceE----EEeecceEEEEccCCchH-------------------------------
Confidence 22 111222211111111 122344443333322100
Q ss_pred ccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC---------CCeEEE
Q 003336 257 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK---------SPISAL 327 (828)
Q Consensus 257 ~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~---------~pIsaL 327 (828)
..+.-..|++|. .||.+|
T Consensus 212 -----------------------------------------------------~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 212 -----------------------------------------------------AQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred -----------------------------------------------------HhhhceeEEeeecccCCceEEEEecee
Confidence 001122334442 489999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
+|+|--..||||+.||. |.+||+.+. ++|..|.+-. ..|-+++|+.||..||++++
T Consensus 239 ~Fhp~~~tfaTgGsDG~-V~~Wd~~~r--------------Krl~q~~~~~--~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGI-VNIWDLFNR--------------KRLKQLAKYE--TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeccccceEEecCCCce-EEEccCcch--------------hhhhhccCCC--CceEEEEeccCCCeEEEEec
Confidence 99999889999999996 899999874 5677776542 24999999999999999975
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=3.1e-15 Score=171.67 Aligned_cols=225 Identities=16% Similarity=0.272 Sum_probs=176.8
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+++++|+.+| +||||+... ...|.+..|+|.+..++.+|+.. .| +.++
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~-------g~---------vT~s------------- 473 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNK-------GF---------VTGS------------- 473 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCC-------ce---------EEec-------------
Confidence 67888999988 999999984 46677778999999999988531 12 2221
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCC-----Cc--------EEEEEeCCCCEEEEEEc--CCEEEEE-eCCEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRS-----QS--------YVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCF 160 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-----g~--------~V~tL~f~s~V~sV~~S--~riLAVs-~~~~I~Iw 160 (828)
.+++|+|||.+- |. .-++|+++..|.+|++| +++|||+ ++.+++||
T Consensus 474 ------------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 474 ------------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ------------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 128999998742 11 12567789999999998 8999995 68899999
Q ss_pred ECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003336 161 DAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (828)
Q Consensus 161 Dl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A 240 (828)
-+.|++-.-+|-+|..|.-| |.+ +|. +
T Consensus 536 flDtlKFflsLYGHkLPV~s------------mDI-----S~D-----------------------------S------- 562 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLS------------MDI-----SPD-----------------------------S------- 562 (888)
T ss_pred EecceeeeeeecccccceeE------------Eec-----cCC-----------------------------c-------
Confidence 99999988888777543211 111 010 0
Q ss_pred cccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC
Q 003336 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (828)
Q Consensus 241 ~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH 320 (828)
..+++++.|..|+||-++=|.|-+.|-||
T Consensus 563 ---------------------------------------------------klivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 563 ---------------------------------------------------KLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred ---------------------------------------------------CeEEeccCCCceEEeccccchhhhhhhcc
Confidence 02345667889999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
...|.++.|=|+..++.||+.||. |+-||-... .++.+|. ||+ ..|++++.+|+|.+++++|.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kF--------------e~iq~L~-~H~-~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKF--------------EEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred cCceeEEEEcccceeEEEecCcce-EEeechhhh--------------hhheeec-cch-heeeeeEEcCCCCeEEeccC
Confidence 999999999999999999999997 899998764 5666774 454 46999999999999999999
Q ss_pred CCcEEEEecCC
Q 003336 401 RGTSHLFAINP 411 (828)
Q Consensus 401 DGTVhIwdl~~ 411 (828)
|.+|++|.-..
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 99999998764
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.65 E-value=1.1e-14 Score=153.35 Aligned_cols=224 Identities=16% Similarity=0.235 Sum_probs=164.6
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+.+|.+|.+..+.+||+++ |.+..-...|.+-|.. ++ |. .|.+..||+++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs---~~-p~-----------rrg~~lv~Sgs------------- 152 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNS---LD-PS-----------RRGPQLVCSGS------------- 152 (338)
T ss_pred CCEEEEecCCceEEEEeccc-ceeeehhccccceeee---cC-cc-----------ccCCeEEEecC-------------
Confidence 38899999999999999997 4444433444444444 43 21 23344456642
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.++|+||||+++.++++++.-+.++.+|.|+ .+++....++.|++||++..+.++++.+
T Consensus 153 ------------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG 214 (338)
T KOG0265|consen 153 ------------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG 214 (338)
T ss_pred ------------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec
Confidence 1289999999999999999888899999996 5777778899999999999999999998
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|.++.. -++++ | +|+.
T Consensus 215 h~DtIt------------~lsls--------------------~--------------~gs~------------------ 230 (338)
T KOG0265|consen 215 HADTIT------------GLSLS--------------------R--------------YGSF------------------ 230 (338)
T ss_pred ccCcee------------eEEec--------------------c--------------CCCc------------------
Confidence 854210 01110 0 1110
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC----CcEEEEeccCCCC----eE
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS----KNVIAQFRAHKSP----IS 325 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s----~~~i~~f~aH~~p----Is 325 (828)
+.+-.-|.+|++||++- .+++..|.+|... ..
T Consensus 231 ----------------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 231 ----------------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ----------------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 00112356899999874 4568899987643 34
Q ss_pred EEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEE
Q 003336 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 326 aLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
..+|||+++.+..+|.|.. +.|||.... ..+|+| -|+.. .|..++|.|.-.+|.++++|.||.
T Consensus 271 ~cswsp~~~~i~ags~dr~-vyvwd~~~r--------------~~lykl-pGh~g-svn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRF-VYVWDTTSR--------------RILYKL-PGHYG-SVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eeeccCCCCccccccccce-EEEeecccc--------------cEEEEc-CCcce-eEEEeeecCCCcEEEEeccCceeE
Confidence 5789999999999999976 899998653 578888 47654 499999999999999999999998
Q ss_pred EEe
Q 003336 406 LFA 408 (828)
Q Consensus 406 Iwd 408 (828)
+=.
T Consensus 334 lge 336 (338)
T KOG0265|consen 334 LGE 336 (338)
T ss_pred eec
Confidence 733
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-14 Score=148.93 Aligned_cols=239 Identities=16% Similarity=0.156 Sum_probs=159.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++.++-+...-||--.+ |+..-.+..|.|.|.|+.+--. ++ .+++++
T Consensus 23 DLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~-------------s~---~liTGS-------------- 71 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWD-------------SK---HLITGS-------------- 71 (327)
T ss_pred cEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCC-------------cc---eeeecc--------------
Confidence 3677777788899998765 5555566689999999987421 01 123321
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCC------EEEEEECCCCce--
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA------QVHCFDAATLEI-- 167 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~------~I~IwDl~t~~~-- 167 (828)
.+.+++|||.++|+++.+++++++|..+.|+ +.+++++.++ .|.+||++....
T Consensus 72 -----------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 72 -----------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred -----------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 1278999999999999999999999999997 5666665543 688999874321
Q ss_pred -----EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecc
Q 003336 168 -----EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE 242 (828)
Q Consensus 168 -----l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ 242 (828)
...+.+. +
T Consensus 135 ~s~ep~~kI~t~-------------------------------------------~------------------------ 147 (327)
T KOG0643|consen 135 DSEEPYLKIPTP-------------------------------------------D------------------------ 147 (327)
T ss_pred cccCceEEecCC-------------------------------------------c------------------------
Confidence 1111110 0
Q ss_pred cccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCC
Q 003336 243 SSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHK 321 (828)
Q Consensus 243 ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~ 321 (828)
+|...+++..++ ..++.+..+|.|.+||+.++ +.+...+.|.
T Consensus 148 -skit~a~Wg~l~------------------------------------~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 148 -SKITSALWGPLG------------------------------------ETIIAGHEDGSISIYDARTGKELVDSDEEHS 190 (327)
T ss_pred -cceeeeeecccC------------------------------------CEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence 000001111111 12345678999999999997 5566678999
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCC---------CCCCCccCC---------CCcee--------------
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGI---------LGTSSACDA---------GTSYV-------------- 369 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~---------~~~~~~~~~---------~~~~~-------------- 369 (828)
..|+.|+|+||.++++|+|.|.+ -++||..+.. +-++.+-.+ +....
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA 269 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA 269 (327)
T ss_pred cccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence 99999999999999999999987 6999987641 111110000 00000
Q ss_pred ---------EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 370 ---------HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 370 ---------~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.+-++ .||- .+|++|+|+|||+-.++|+.||.|+|.....
T Consensus 270 rFyh~i~eEEigrv-kGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 270 RFYHLIFEEEIGRV-KGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hHHHHHHHHHhccc-cccc-cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 00011 2332 3599999999999999999999999876554
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=2.9e-14 Score=163.89 Aligned_cols=253 Identities=17% Similarity=0.236 Sum_probs=173.6
Q ss_pred CCCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 15 GATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 15 ~~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
++.+++++.|.+.| ++|||... +-|.-.++.|...|..+++.-.. -..++. +
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g---------------~~llss-S---------- 411 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARG---------------NVLLSS-S---------- 411 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecC---------------CEEEEe-e----------
Confidence 35678888888776 99999987 78889999999999999986432 111222 1
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEE--EEE--cCCEEEEEeCC--EEEEEECCCCce
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYS--VRC--SSRVVAICQAA--QVHCFDAATLEI 167 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~--S~riLAVs~~~--~I~IwDl~t~~~ 167 (828)
-++|||.||++.....+++.-+.++.- |+. ++.+|.++..+ .|++|++.|++.
T Consensus 412 ---------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 412 ---------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred ---------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 238899999999999999998887643 333 46766654333 799999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
+-.|.+|..| +. -|++.. .|
T Consensus 471 lDiLsGHEgP---------------Vs----~l~f~~---------------------------~~-------------- 490 (893)
T KOG0291|consen 471 LDILSGHEGP---------------VS----GLSFSP---------------------------DG-------------- 490 (893)
T ss_pred eehhcCCCCc---------------ce----eeEEcc---------------------------cc--------------
Confidence 9999887432 11 122220 01
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISA 326 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsa 326 (828)
.++++++.|.+|++||+-.. ..+.+++ +.+.+.+
T Consensus 491 --------------------------------------------~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 491 --------------------------------------------SLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA 525 (893)
T ss_pred --------------------------------------------CeEEeccccceEEEEEeeccCceeeeEe-eccceeE
Confidence 12345678899999998754 3445554 6678999
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCcc--CCCCceeEEEEEecC--CccccEEEEEEccCCCEEEEEeCCC
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC--DAGTSYVHLYRLQRG--LTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~--~~~~~~~~l~~L~RG--~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
++|+|||+-||.+..||. |.+||+.....-.+-.+ +..+.....-++.+. .....+..|++|+||++|.+|+...
T Consensus 526 vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred EEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 999999999999999998 89999987522100000 000000000011000 0112389999999999999999999
Q ss_pred cEEEEecCCCCCceeeccC
Q 003336 403 TSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 403 TVhIwdl~~~gg~~~~~~H 421 (828)
.|.||++...--...|+..
T Consensus 605 ~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 605 SICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred cEEEEECchhheeeeEEec
Confidence 9999999875444455543
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.64 E-value=5.9e-15 Score=158.10 Aligned_cols=226 Identities=17% Similarity=0.266 Sum_probs=175.1
Q ss_pred CCCcEEEEEccC-CeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+....|+.|..+ .++|||+++ +.+.-.+..|-..|+.+++.+. +|+|.-|+.+
T Consensus 161 P~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~r--------------HpYlFs~ged----------- 214 (460)
T KOG0285|consen 161 PGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKR--------------HPYLFSAGED----------- 214 (460)
T ss_pred CCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeeccc--------------CceEEEecCC-----------
Confidence 346777777755 599999998 6777778889999999998763 4777655532
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
+.|+-|||...+.|+.+- +=+.|++++.- -++|+. +.|..|+|||++|-..+++
T Consensus 215 ----------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 215 ----------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred ----------------------CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence 789999999999888764 35789999986 455554 5678999999999999999
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+.+|.++ ++ +.++-+
T Consensus 273 l~GH~~~---------------V~---~V~~~~----------------------------------------------- 287 (460)
T KOG0285|consen 273 LSGHTNP---------------VA---SVMCQP----------------------------------------------- 287 (460)
T ss_pred ecCCCCc---------------ce---eEEeec-----------------------------------------------
Confidence 9888542 11 000000
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
+++.+++++.|++|++||+..++...++..|+..|.||+.+
T Consensus 288 ---------------------------------------~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 288 ---------------------------------------TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred ---------------------------------------CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC
Confidence 00123456778999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|.-.++|+||.| +|+-|++..+ ..+..| .|++ +.|..++...|+ .+++|++.|++..||..
T Consensus 329 P~e~~fASas~d--nik~w~~p~g--------------~f~~nl-sgh~-~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 329 PKENLFASASPD--NIKQWKLPEG--------------EFLQNL-SGHN-AIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred CchhhhhccCCc--cceeccCCcc--------------chhhcc-cccc-ceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 999999999998 3899999776 333444 3443 569999999887 66789999999999998
Q ss_pred CC
Q 003336 411 PL 412 (828)
Q Consensus 411 ~~ 412 (828)
.+
T Consensus 390 sg 391 (460)
T KOG0285|consen 390 SG 391 (460)
T ss_pred cC
Confidence 74
No 51
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=1e-14 Score=153.72 Aligned_cols=216 Identities=18% Similarity=0.262 Sum_probs=155.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.+|++.|.++..++||+... ....+..|++||+++++++.+. .++| ++++|
T Consensus 85 skVf~g~~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~------------~~cl--~TGSW------------- 135 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMN------------YQCL--VTGSW------------- 135 (347)
T ss_pred ceEEeeccCCceEEEEccCC--CeeeeeecccceeEEEEecCCC------------ccee--Eeccc-------------
Confidence 78999999999999999973 5566788999999999997531 1233 45444
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEcCCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPI 176 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~ 176 (828)
++|||+||+|+...+.++.++.+||++.+-..+++| +.++.|.+|+|+.....+....+|.
T Consensus 136 ------------------DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL 197 (347)
T KOG0647|consen 136 ------------------DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL 197 (347)
T ss_pred ------------------ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc
Confidence 489999999999999999999999999998777777 5667899999988766655555443
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccC
Q 003336 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 256 (828)
Q Consensus 177 ~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd 256 (828)
... -|.+|...++ .
T Consensus 198 k~Q-----------------~R~va~f~d~---------------------------~---------------------- 211 (347)
T KOG0647|consen 198 KWQ-----------------TRCVACFQDK---------------------------D---------------------- 211 (347)
T ss_pred cce-----------------eeEEEEEecC---------------------------C----------------------
Confidence 211 1333322100 0
Q ss_pred ccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEeccCCC---------CeE
Q 003336 257 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKS---------PIS 325 (828)
Q Consensus 257 ~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~--~~i~~f~aH~~---------pIs 325 (828)
.++-++-.|.|-|..+..+ +.-.+|++|.. +|.
T Consensus 212 ------------------------------------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 212 ------------------------------------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred ------------------------------------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 0011234566666666654 44456777762 578
Q ss_pred EEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 326 aLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
.|+|.|.-..|+|++.||+ +..||-... .+|.+... ....|.+.+|+.+|.++|-+.
T Consensus 256 si~FhP~hgtlvTaGsDGt-f~FWDkdar--------------~kLk~s~~--~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGT-FSFWDKDAR--------------TKLKTSET--HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEeecccceEEEecCCce-EEEecchhh--------------hhhhccCc--CCCccceeEecCCCCEEEEEe
Confidence 8999999889999999998 899997653 23333221 234599999999999998764
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.63 E-value=8.8e-14 Score=154.99 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=93.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
++++.|+.|.+|+-.-.+.-.+++.|..-|.|+.|||||.++||++.||+ |.|||-.++ +++..|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktg--------------e~vg~l 228 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTG--------------EKVGEL 228 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCc--------------cEEEEe
Confidence 56778999999998888888899999999999999999999999999998 889998876 566676
Q ss_pred ec--CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 375 QR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 375 ~R--G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.. +|. ..|+.|+||||++.|+++|.|.|++|||+++.....++.
T Consensus 229 ~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 229 EDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred cCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 42 232 239999999999999999999999999999875555553
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.63 E-value=8.2e-16 Score=169.81 Aligned_cols=242 Identities=12% Similarity=0.162 Sum_probs=175.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+|..|.++-++||++-+.+.+.+.+..|..+|+.+++.+.+. . +|. ++
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------~------fLS-~s---------------- 277 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------S------FLS-AS---------------- 277 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------e------eee-ee----------------
Confidence 45666677777999999887888889999999999998875431 1 221 11
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CC-EEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~r-iLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+++|++||++||+++..+.....+++|.|. .+ +||.+++++|..||+++++.++...-
T Consensus 278 -----------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 278 -----------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred -----------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 2388999999999999999999999999995 24 44557899999999999986554433
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|- +++- -|-|-
T Consensus 341 hL---------------g~i~----~i~F~-------------------------------------------------- 351 (503)
T KOG0282|consen 341 HL---------------GAIL----DITFV-------------------------------------------------- 351 (503)
T ss_pred hh---------------hhee----eeEEc--------------------------------------------------
Confidence 21 0000 00010
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS 332 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPd 332 (828)
+. +..|+++..++.|+||+.....++..+. .+.....||+.+|+
T Consensus 352 -----------------~~------------------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 352 -----------------DE------------------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN 396 (503)
T ss_pred -----------------cC------------------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence 00 0124556778899999999987776654 33346778999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc-EEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|..++.=|.|.. |-||.+.+... ...++..+|+..+- -..|.|||||.+|++|+.||.+-+||..+
T Consensus 397 ~~~~~aQs~dN~-i~ifs~~~~~r------------~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 397 GKWFAAQSMDNY-IAIFSTVPPFR------------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CCeehhhccCce-EEEEecccccc------------cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 999999999976 89999876411 11112224544332 45689999999999999999999999999
Q ss_pred CCCceeeccCCC
Q 003336 412 LGGSVNFQPTDA 423 (828)
Q Consensus 412 ~gg~~~~~~H~~ 423 (828)
......++.|+.
T Consensus 464 ~kl~~~lkah~~ 475 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ 475 (503)
T ss_pred hhhhhccccCCc
Confidence 887788888843
No 54
>PTZ00420 coronin; Provisional
Probab=99.63 E-value=2.7e-13 Score=158.87 Aligned_cols=219 Identities=9% Similarity=0.088 Sum_probs=145.0
Q ss_pred eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCC
Q 003336 29 FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHD 108 (828)
Q Consensus 29 ~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~ 108 (828)
+++|+.... .....+..|.++|.++++.|.. ..+||.++.
T Consensus 56 I~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~-------------~~lLASgS~-------------------------- 95 (568)
T PTZ00420 56 IRLENQMRK-PPVIKLKGHTSSILDLQFNPCF-------------SEILASGSE-------------------------- 95 (568)
T ss_pred EEeeecCCC-ceEEEEcCCCCCEEEEEEcCCC-------------CCEEEEEeC--------------------------
Confidence 567776542 3344566789999999998731 125554432
Q ss_pred CCCCCcCCCEEEEEECCCCc--------EEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEEEEEcCC
Q 003336 109 LGNGSSVPTVVHFYSLRSQS--------YVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 109 ~g~~~~~~~tVrlWDL~Tg~--------~V~tL~-f~s~V~sV~~S~---riLAV-s~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
+++|+|||+.++. .+..+. +...|.+|+|++ .+|++ +.+++|+|||+.+++.+.++. ++
T Consensus 96 -------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~ 167 (568)
T PTZ00420 96 -------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP 167 (568)
T ss_pred -------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC
Confidence 2789999998753 233444 467899999973 34554 568999999999998776663 21
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
. .+ ..|+|.. +|.
T Consensus 168 ~---------------~V----~Slswsp---------------------------dG~--------------------- 180 (568)
T PTZ00420 168 K---------------KL----SSLKWNI---------------------------KGN--------------------- 180 (568)
T ss_pred C---------------cE----EEEEECC---------------------------CCC---------------------
Confidence 1 00 1122221 111
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE-----EEEc
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA-----LCFD 330 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsa-----LaFS 330 (828)
.++++..++.|+|||+.+++.+.++.+|.+.+.+ ..|+
T Consensus 181 -------------------------------------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 181 -------------------------------------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred -------------------------------------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 1223456789999999999999999999986543 3467
Q ss_pred CCCCEEEEEecCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 331 PSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 331 PdG~lLATaS~DG---t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
+++.+|+|++.++ +.|+|||++.. . ...+...+.. ....+...-+.++|.++++|+.|++|++|
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~-~----------~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNT-T----------SALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCC-C----------CceEEEEecC--CccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence 9999999988775 24999999853 0 1122233321 12224444456779999999999999999
Q ss_pred ecCCC
Q 003336 408 AINPL 412 (828)
Q Consensus 408 dl~~~ 412 (828)
++...
T Consensus 291 e~~~~ 295 (568)
T PTZ00420 291 QHSLG 295 (568)
T ss_pred EccCC
Confidence 99753
No 55
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.62 E-value=1.4e-12 Score=137.13 Aligned_cols=271 Identities=12% Similarity=0.124 Sum_probs=156.8
Q ss_pred EEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccccc
Q 003336 20 VLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (828)
Q Consensus 20 vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~ 99 (828)
++..+.++.+.+||+++ ++....+..+.+ ++.+.+.|+. ..++++...
T Consensus 4 ~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg--------------~~l~~~~~~---------------- 51 (300)
T TIGR03866 4 YVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDG--------------KLLYVCASD---------------- 51 (300)
T ss_pred EEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCC--------------CEEEEEECC----------------
Confidence 34455566799999976 445555554433 5666766532 133333321
Q ss_pred CCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE--eCCEEEEEECCCCceEEEEEcCC
Q 003336 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 100 ~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs--~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.++|++||+.+++.++.+.....+..+.++ ++.++++ .+++|++||+.+.+.+..+....
T Consensus 52 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 115 (300)
T TIGR03866 52 ----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV 115 (300)
T ss_pred ----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC
Confidence 167999999999998888765556677775 5556553 46799999999987776664321
Q ss_pred CccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
. ...++++| ++|+++... +..+..|.....+.+.. + .
T Consensus 116 ~-------------~~~~~~~~dg~~l~~~~~~--------------------------~~~~~~~d~~~~~~~~~-~-~ 154 (300)
T TIGR03866 116 E-------------PEGMAVSPDGKIVVNTSET--------------------------TNMAHFIDTKTYEIVDN-V-L 154 (300)
T ss_pred C-------------cceEEECCCCCEEEEEecC--------------------------CCeEEEEeCCCCeEEEE-E-E
Confidence 1 11234433 555554211 00110011110000000 0 0
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEE
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----S--PISA 326 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~-----~--pIsa 326 (828)
.+.. + ..+. ..++ |.. .++.+..+|.|.+||+.+++.+..+..+. . ....
T Consensus 155 ~~~~-------------~---~~~~-~s~d----g~~--l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T TIGR03866 155 VDQR-------------P---RFAE-FTAD----GKE--LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG 211 (300)
T ss_pred cCCC-------------c---cEEE-ECCC----CCE--EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence 0000 0 0000 0111 100 12344568999999999998877765332 1 1246
Q ss_pred EEEcCCCCEEEEE-ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcE
Q 003336 327 LCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTS 404 (828)
Q Consensus 327 LaFSPdG~lLATa-S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTV 404 (828)
++|+|||++++.+ ..+++ |.|||+.++ ..+..+..+ ..+.+++|+|||++|++++ .+|+|
T Consensus 212 i~~s~dg~~~~~~~~~~~~-i~v~d~~~~--------------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANR-VAVVDAKTY--------------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred eEECCCCCEEEEEcCCCCe-EEEEECCCC--------------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeE
Confidence 8899999986554 33444 899999765 222223222 2488999999999998874 68999
Q ss_pred EEEecCCCCCceeecc
Q 003336 405 HLFAINPLGGSVNFQP 420 (828)
Q Consensus 405 hIwdl~~~gg~~~~~~ 420 (828)
+|||+........++.
T Consensus 274 ~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 274 SVIDVAALKVIKSIKV 289 (300)
T ss_pred EEEECCCCcEEEEEEc
Confidence 9999998655555543
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.62 E-value=1.7e-15 Score=161.44 Aligned_cols=227 Identities=16% Similarity=0.266 Sum_probs=163.0
Q ss_pred CcEEEEEcc-CCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
++||+.|.. ..++|||+++ ++...++-.|-..|-.+++.. .+++-|+.
T Consensus 247 ~rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVLhlrf~n----------------g~mvtcSk-------------- 295 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVLHLRFSN----------------GYMVTCSK-------------- 295 (499)
T ss_pred ceEEEecCCCceEEEEeccC-CchhhHHhhhcceeEEEEEeC----------------CEEEEecC--------------
Confidence 556666664 4699999998 566666666777777777652 24444432
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEE---E-eCCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHM---L-KFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~t---L-~f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+.++.+||+.+...+.. | .+...|..|.|+.++++. +.|.+|++||+.|++++++|
T Consensus 296 -------------------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl 356 (499)
T KOG0281|consen 296 -------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTL 356 (499)
T ss_pred -------------------CceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhh
Confidence 27899999987763321 2 257799999999887776 56789999999999999999
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.+|.- | +| .|.|- |..
T Consensus 357 ~gHkR--G-------------IA----ClQYr-----------------------------~rl---------------- 372 (499)
T KOG0281|consen 357 NGHKR--G-------------IA----CLQYR-----------------------------DRL---------------- 372 (499)
T ss_pred hcccc--c-------------ce----ehhcc-----------------------------CeE----------------
Confidence 88731 1 11 01121 111
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
+++++.|.+|+|||+..|+++..+++|..-|.|+.|
T Consensus 373 ------------------------------------------vVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-- 408 (499)
T KOG0281|consen 373 ------------------------------------------VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 408 (499)
T ss_pred ------------------------------------------EEecCCCceEEEEeccccHHHHHHhchHHhhhheee--
Confidence 134567889999999999999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|.+.+++|..||+ |+|||+..+......+ ...++..+-+. ...|..+.|. ...|+++|.|.||-|||.-.
T Consensus 409 d~krIVSGaYDGk-ikvWdl~aaldpra~~-----~~~Cl~~lv~h--sgRVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 409 DNKRIVSGAYDGK-IKVWDLQAALDPRAPA-----STLCLRTLVEH--SGRVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred cCceeeeccccce-EEEEecccccCCcccc-----cchHHHhhhhc--cceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 5678999999998 8999998762211111 11244444332 2358888884 46899999999999999865
Q ss_pred C
Q 003336 412 L 412 (828)
Q Consensus 412 ~ 412 (828)
+
T Consensus 479 ~ 479 (499)
T KOG0281|consen 479 G 479 (499)
T ss_pred C
Confidence 3
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=2.4e-14 Score=146.72 Aligned_cols=232 Identities=15% Similarity=0.213 Sum_probs=168.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+-||.+|.+..+++|+.-. +.+....+.|--.|..++...+. . .++-|++
T Consensus 30 nY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dn-------s-------kf~s~Gg--------------- 79 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDN-------S-------KFASCGG--------------- 79 (307)
T ss_pred CEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccc-------c-------ccccCCC---------------
Confidence 6899999999999999976 77888888888888877765321 0 1222221
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCC--CceEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT--LEIEYAI 171 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t--~~~l~tL 171 (828)
+..|.+||+.||+.++.+.- ..+|.+|+|| ..+++. +.+.++++||-+. .+.++.+
T Consensus 80 ------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 80 ------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 17799999999999998875 5699999998 445554 6789999999874 3444444
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.+... +.+++ +.+++
T Consensus 142 dea~D--------------~V~Si----------------------------------------------~v~~h----- 156 (307)
T KOG0316|consen 142 DEAKD--------------GVSSI----------------------------------------------DVAEH----- 156 (307)
T ss_pred hhhcC--------------ceeEE----------------------------------------------Eeccc-----
Confidence 33211 00000 00000
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
.++.++.||+++.||++.++.....-+| ||+|++|++
T Consensus 157 -----------------------------------------eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~ 193 (307)
T KOG0316|consen 157 -----------------------------------------EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK 193 (307)
T ss_pred -----------------------------------------EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC
Confidence 1234567999999999999876666554 999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc-EEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
||..+..++-|++ +|+.|-.++ +|..-..|+.+.. =.++||+.-...+++||.||.|.+||+.
T Consensus 194 d~nc~La~~l~st-lrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 194 DGNCSLASSLDST-LRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred CCCEEEEeeccce-eeecccchh---------------HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 9999999999987 899998876 2223334655433 4678999989999999999999999998
Q ss_pred CCCCceeeccC
Q 003336 411 PLGGSVNFQPT 421 (828)
Q Consensus 411 ~~gg~~~~~~H 421 (828)
.......+.-|
T Consensus 258 d~~~~sk~~~~ 268 (307)
T KOG0316|consen 258 DETQISKLSVV 268 (307)
T ss_pred cceeeeeeccC
Confidence 76554455443
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.62 E-value=3.5e-14 Score=147.35 Aligned_cols=228 Identities=16% Similarity=0.219 Sum_probs=158.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeee-eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS-~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.++-.+.++..+.||+++...-..++.. +|.+.|--+..-|. ..++++.+.+
T Consensus 33 ~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-------------~~d~~atas~-------------- 85 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-------------HPDLFATASG-------------- 85 (313)
T ss_pred ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-------------CCcceEEecC--------------
Confidence 4555666777899999997533333332 45556665554432 1235555543
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.+|++||.+++++++.+.-+..=..|.++ +..+++ .-+..|.++|+++.+......-
T Consensus 86 -------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 86 -------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred -------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 178999999999999999887665567776 566665 5677899999998765433211
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
. + -.+-++ +. ++
T Consensus 147 ~-----~--------e~ne~~-------w~----------------~~-------------------------------- 158 (313)
T KOG1407|consen 147 K-----F--------EVNEIS-------WN----------------NS-------------------------------- 158 (313)
T ss_pred c-----c--------eeeeee-------ec----------------CC--------------------------------
Confidence 0 0 000000 00 00
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
++ .|.-...-|.|.|....+.+++..++||....-||+|+|+|
T Consensus 159 -nd------------------------------------~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 159 -ND------------------------------------LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred -CC------------------------------------EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC
Confidence 00 11112345899999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
++||+||.|-- +-+||+..- .++..+.|-. ..|..|+||.||++||++|.|.-|-|=.+.++.
T Consensus 202 ryfA~GsADAl-vSLWD~~EL--------------iC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 202 RYFATGSADAL-VSLWDVDEL--------------ICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ceEeeccccce-eeccChhHh--------------hhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 99999999965 899999764 3444554532 459999999999999999999999888887653
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=2.2e-14 Score=147.06 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=141.9
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
.+||+|+...|.++++..- ...|..++.+ .++.+.+.++.|.+||..|++.++.+.+|.. .+|.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a------------qVNt 106 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA------------QVNT 106 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc------------eeeE
Confidence 8999999999999999986 4589988884 5555567888999999999999999988731 2222
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+ +|-.+ +.
T Consensus 107 V-------~fNee----------------------------sS------------------------------------- 114 (307)
T KOG0316|consen 107 V-------RFNEE----------------------------SS------------------------------------- 114 (307)
T ss_pred E-------EecCc----------------------------ce-------------------------------------
Confidence 2 23210 00
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC--CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS--KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s--~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
.+++++-|..+++||.++ .+|++.|..-...|.++.. .+..+++||.||+ +|.||
T Consensus 115 --------------------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGt-vRtyd 171 (307)
T KOG0316|consen 115 --------------------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT-VRTYD 171 (307)
T ss_pred --------------------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCc-EEEEE
Confidence 012345677899999986 4688888877888888766 6788999999999 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
++.+ .+. -..-...|++++||+|++.+.+++.|+|+|+.|-.++.-....++|.+.-
T Consensus 172 iR~G---------------~l~---sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 172 IRKG---------------TLS---SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred eecc---------------eee---hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce
Confidence 9987 111 11123469999999999999999999999999998876666788886643
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.61 E-value=1.3e-14 Score=159.58 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=107.9
Q ss_pred ccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 294 FPDADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~--s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
|.+.+.++.+.|||++ +.++....++|..+|.|++|+| ++.+|||||.|++ +.+||++.- ...
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL-------------~~~ 308 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL-------------NKP 308 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc-------------ccC
Confidence 4556789999999999 5677778889999999999999 7889999999999 899999975 245
Q ss_pred EEEEecCCccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCCc--c-cCCCCccceecCCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT--K-HGAMAKSGVRWPPN 442 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~~--~-~~~~~~~~~r~~~~ 442 (828)
+++|. |+. ..|..|.|||+ ...||+++.|+.++|||+..-+...+...-.+.+++ | ||++..++..+.|+
T Consensus 309 lh~~e-~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 309 LHTFE-GHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred ceecc-CCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 67774 554 35999999994 568899999999999999999888776665666666 3 47777776555543
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=158.73 Aligned_cols=178 Identities=15% Similarity=0.247 Sum_probs=129.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
+-|.|...+|++.+++++..+.|.++.|+ +++++++.+++|++||+++..++++........+ ..+
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g-----------ts~ 393 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG-----------TSL 393 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce-----------eee
Confidence 56999999999999999999999999996 5677778899999999999999888866421111 111
Q ss_pred e--eccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 194 A--VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 194 A--lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
+ +.++|
T Consensus 394 ~~S~ng~y------------------------------------------------------------------------ 401 (514)
T KOG2055|consen 394 CISLNGSY------------------------------------------------------------------------ 401 (514)
T ss_pred eecCCCce------------------------------------------------------------------------
Confidence 1 11122
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-C
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H 344 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s------~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t 344 (828)
+++++..|.|.|||..+ .+++.++..-+..|+.|+|+||+++||.||... .
T Consensus 402 ----------------------lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 402 ----------------------LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred ----------------------EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcccc
Confidence 23455667888888653 578888888889999999999999999998742 2
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 345 ~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+|+-.+... . +-.-+-. ++.+-..|.|++|||.|-+||.|..+|.+|||.|+.|
T Consensus 460 alrLVHvPS~-T-----------VFsNfP~-~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 460 ALRLVHVPSC-T-----------VFSNFPT-SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEEeccce-e-----------eeccCCC-CCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 3566554321 0 0000000 1122234899999999999999999999999999764
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=4.8e-14 Score=156.18 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=160.7
Q ss_pred EeeeecccCCC--CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEe
Q 003336 5 AGFDKLESEAG--ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 81 (828)
Q Consensus 5 ~~fd~l~~~~~--~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~ 81 (828)
+.|++--.+.+ ..+++|++|-..| +||||..+. .....+..|+.||+.++|.|... -+++.++
T Consensus 65 srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah~apv~~~~f~~~d~-------------t~l~s~s 130 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VILRQLYAHQAPVHVTKFSPQDN-------------TMLVSGS 130 (487)
T ss_pred HhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HHHHHHhhccCceeEEEecccCC-------------eEEEecC
Confidence 45555433333 2378999998888 899996552 34455667999999999987421 1343333
Q ss_pred CCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CCEEEE-EeCCE
Q 003336 82 DGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQ 156 (828)
Q Consensus 82 ~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S---~riLAV-s~~~~ 156 (828)
+ | .++++||+.+......|. +..-|.+.+|+ +.+++. +.|++
T Consensus 131 D----------d-----------------------~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 131 D----------D-----------------------KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred C----------C-----------------------ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 3 1 789999999888654554 46689999996 345555 78999
Q ss_pred EEEEECCCC-ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcc
Q 003336 157 VHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR 235 (828)
Q Consensus 157 I~IwDl~t~-~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~ 235 (828)
|++||+++. ..+.++. | ++| +. +.|+.+ .|++
T Consensus 178 vrl~DtR~~~~~v~eln-h----g~p-----------Ve---~vl~lp----------------------------sgs~ 210 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN-H----GCP-----------VE---SVLALP----------------------------SGSL 210 (487)
T ss_pred EEEEEeccCCceeEEec-C----CCc-----------ee---eEEEcC----------------------------CCCE
Confidence 999999987 5555553 2 222 11 111111 1111
Q ss_pred eeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEE
Q 003336 236 VAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVI 314 (828)
Q Consensus 236 Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i 314 (828)
+ +++ ....|+|||+.+| +.+
T Consensus 211 i----------------------------------------------------------asA-gGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 211 I----------------------------------------------------------ASA-GGNSVKVWDLTTGGQLL 231 (487)
T ss_pred E----------------------------------------------------------EEc-CCCeEEEEEecCCceeh
Confidence 1 111 1237999999965 455
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCE
Q 003336 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (828)
Q Consensus 315 ~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 394 (828)
..+..|...|+||+|..+++.|.+||-||+ ++|||+... ++.+-+++ ++.|.+|+.|||++.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~------------Kvv~s~~~-----~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY------------KVVHSWKY-----PGPVLSIAVSPDDQT 293 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce------------EEEEeeec-----ccceeeEEecCCCce
Confidence 555569999999999999999999999999 899997654 23332222 356999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 003336 395 IMISSSRGTSHLFA 408 (828)
Q Consensus 395 LAs~S~DGTVhIwd 408 (828)
+++|-.+|.+-+-+
T Consensus 294 ~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRR 307 (487)
T ss_pred EEEecccceeeeeh
Confidence 99999999987763
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.59 E-value=1.4e-13 Score=148.14 Aligned_cols=235 Identities=13% Similarity=0.194 Sum_probs=162.8
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+..++|+.|...| +-+|.+.. +...++++.|..++.+-+++|++. .+ +++.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGK--------------r~-~tgy------------ 209 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGK--------------RI-LTGY------------ 209 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCc--------------eE-EEEe------------
Confidence 4578888888777 88999987 467889999999999999998631 12 1221
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCC--CCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR--SPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~--s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~ 169 (828)
.+++|++||++|++.++.+.-. ..-..+.++ +..+.. ..+..+++-+..+++.+.
T Consensus 210 --------------------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 210 --------------------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred --------------------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 1278999999999999999731 122233443 444433 456678888888888766
Q ss_pred EEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
...... |. +. + - .++...+..+.
T Consensus 270 ~~n~~~-----~~-----l~--~---------~--------------~e~~~esve~~---------------------- 292 (399)
T KOG0296|consen 270 CNNGTV-----PE-----LK--P---------S--------------QEELDESVESI---------------------- 292 (399)
T ss_pred ecCCCC-----cc-----cc--c---------c--------------chhhhhhhhhc----------------------
Confidence 654210 00 00 0 0 00000000000
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
..|. .-..++.+.-||+|.|||+.+.++ +++-.|..+|..|.|
T Consensus 293 --------------~~ss----------------------~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w 335 (399)
T KOG0296|consen 293 --------------PSSS----------------------KLPLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKW 335 (399)
T ss_pred --------------cccc----------------------ccchhhcccccceEEEEecccchh-heeccCCCceEEEEE
Confidence 0000 001234567899999999987655 556679999999999
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
-+ ..+|+||+.+|+ |++||.++| ..++++ +||. ..|++++.+||.++++++|.|+|.+||++
T Consensus 336 ~~-t~~l~t~c~~g~-v~~wDaRtG--------------~l~~~y-~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 336 LN-TDYLLTACANGK-VRQWDARTG--------------QLKFTY-TGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cC-cchheeeccCce-EEeeecccc--------------ceEEEE-ecCc-hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99 778999999997 899999998 344454 6876 45999999999999999999999999987
Q ss_pred C
Q 003336 410 N 410 (828)
Q Consensus 410 ~ 410 (828)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=4.1e-14 Score=156.71 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=163.4
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.=+++...-++|||+.... .+.+.+++-+..|+.+.|-.++ -|||.+ +.+
T Consensus 40 ~d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG--------------~LlaaG-D~s-------------- 89 (487)
T KOG0310|consen 40 YDFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDG--------------RLLAAG-DES-------------- 89 (487)
T ss_pred CceEEecccEEEEEecchh-hhhhhHHhhccceeEEEeecCC--------------eEEEcc-CCc--------------
Confidence 3455566788999998763 4666777777788877765332 255533 322
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CCEEEEEeC-CEEEEEECCCCceEEEEEc
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAICQA-AQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S---~riLAVs~~-~~I~IwDl~t~~~l~tL~t 173 (828)
+.|+++|+++...++.+. +..+|..+.|+ ..+++.+.| ..+.+||+.+......+.+
T Consensus 90 ------------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 90 ------------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred ------------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence 679999988866666665 46799999997 345555554 5789999999886556666
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|.+-. |..++. |.
T Consensus 152 htDYV-------------------R~g~~~-------------~~----------------------------------- 164 (487)
T KOG0310|consen 152 HTDYV-------------------RCGDIS-------------PA----------------------------------- 164 (487)
T ss_pred Cccee-------------------Eeeccc-------------cC-----------------------------------
Confidence 64310 111111 00
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCC-cccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNG-HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g-~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP 331 (828)
++ .+++++.||.|++||+++. ..+..| .|..||..+.|=|
T Consensus 165 -------------------------------------~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp 206 (487)
T KOG0310|consen 165 -------------------------------------NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP 206 (487)
T ss_pred -------------------------------------CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC
Confidence 01 1356789999999999987 566666 4889999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+|.++|||+ |..|+|||+..| ...++.+ ......|+|+++..|++.|.+++.||.|+|||+..
T Consensus 207 sgs~iasAg--Gn~vkVWDl~~G-------------~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 207 SGSLIASAG--GNSVKVWDLTTG-------------GQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCCEEEEcC--CCeEEEEEecCC-------------ceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 999999998 667999999876 1233332 21234599999999999999999999999999887
Q ss_pred CCCceee
Q 003336 412 LGGSVNF 418 (828)
Q Consensus 412 ~gg~~~~ 418 (828)
+.-..++
T Consensus 270 ~Kvv~s~ 276 (487)
T KOG0310|consen 270 YKVVHSW 276 (487)
T ss_pred eEEEEee
Confidence 7444343
No 65
>PTZ00420 coronin; Provisional
Probab=99.58 E-value=3.4e-13 Score=157.94 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=82.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
++++.||.|+|||+.+++.+..+. |...|.+|+|+|+|.+|++++.|++ |+|||++.+ ..+.++
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg--------------~~i~tl 205 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQ--------------EIASSF 205 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCC--------------cEEEEE
Confidence 345678999999999998887776 6678999999999999999999987 899999876 233344
Q ss_pred ecCCccc----cEEEEEEccCCCEEEEEeCCC----cEEEEecCCCCCcee
Q 003336 375 QRGLTNA----VIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVN 417 (828)
Q Consensus 375 ~RG~t~a----~I~sIaFSpDg~~LAs~S~DG----TVhIwdl~~~gg~~~ 417 (828)
.+|... .++...|++|+++|++++.|+ +|+|||+...+.+..
T Consensus 206 -~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 206 -HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred -ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 233322 145556889999999988774 899999987555443
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.7e-14 Score=144.84 Aligned_cols=222 Identities=15% Similarity=0.218 Sum_probs=156.3
Q ss_pred CeEEEEecCCCceeEeeeee-cCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCC
Q 003336 28 GFQVWDVEEADNVHDLVSRY-DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANY 106 (828)
Q Consensus 28 G~qVWdv~~~~~~~ellS~h-dG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~ 106 (828)
.+-|.+++....++|..+.. ...+..+++.++.. ..++.|.+ |
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e-------------~~~~~a~G----------D------------- 82 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE-------------NQVIAASG----------D------------- 82 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCc-------------ceEEEEec----------C-------------
Confidence 35777886556777777743 56778888876421 13333332 1
Q ss_pred CCCCCCCcCCCEEEEEECCC-CcEEEEEe-CCCCEEEEEEc---CC-EEEEEeCCEEEEEECCCCceEEEEEcCCCccCC
Q 003336 107 HDLGNGSSVPTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGH 180 (828)
Q Consensus 107 h~~g~~~~~~~tVrlWDL~T-g~~V~tL~-f~s~V~sV~~S---~r-iLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~ 180 (828)
+++||||+.- -..++.++ +...|++|.++ ++ +|..+-|++|++||..-.+-++|+.+|..
T Consensus 83 ----------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~---- 148 (311)
T KOG0277|consen 83 ----------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS---- 148 (311)
T ss_pred ----------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc----
Confidence 6799999643 23455554 57799999997 33 34446799999999988887777766522
Q ss_pred CCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccce
Q 003336 181 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 260 (828)
Q Consensus 181 p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~ 260 (828)
+-|... .+|.
T Consensus 149 -------------------~Iy~a~---------~sp~------------------------------------------ 158 (311)
T KOG0277|consen 149 -------------------CIYQAA---------FSPH------------------------------------------ 158 (311)
T ss_pred -------------------EEEEEe---------cCCC------------------------------------------
Confidence 122200 0000
Q ss_pred eeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEE
Q 003336 261 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTA 339 (828)
Q Consensus 261 ~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATa 339 (828)
..+.|++++.||..+|||++.......|.+|...|.|..|+. +-.+||||
T Consensus 159 -----------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 159 -----------------------------IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred -----------------------------CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 011345567899999999986433334999999999999998 78899999
Q ss_pred ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCC
Q 003336 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 340 S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+.|+. ||+||++.- ..++..| -|+.-| |..|.|||- ...||++|-|-|++|||......
T Consensus 210 ~vd~~-vr~wDir~~-------------r~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 210 GVDNL-VRGWDIRNL-------------RTPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred CCCce-EEEEehhhc-------------cccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchh
Confidence 99986 999999875 2457777 455544 999999994 56899999999999999985444
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=156.33 Aligned_cols=235 Identities=11% Similarity=0.138 Sum_probs=165.5
Q ss_pred CcEEEEEccCCeEEEEecCCC-ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~-~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+...|.+.-+++|++.... +....++...|++..+.+=+.. +-.|| ..
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-------------~~~iA--as-------------- 238 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-------------KHVIA--AS-------------- 238 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-------------ceEEe--ec--------------
Confidence 466777888889999997522 1333344556667766653211 11221 10
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~ 172 (828)
.++.+++|++.+.+..++|.. ..+|.++.|. .++|..+.+.+|+.||+....|..++.
T Consensus 239 ------------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 239 ------------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred ------------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 236799999999999999975 5699999995 233333678899999999877665543
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.-+. .+.|.++
T Consensus 301 ~~S~-------------cnDI~~~-------------------------------------------------------- 311 (459)
T KOG0288|consen 301 PGSQ-------------CNDIVCS-------------------------------------------------------- 311 (459)
T ss_pred cccc-------------ccceEec--------------------------------------------------------
Confidence 2110 0111100
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
. ..+.++..|++|+.||+.+..++.....|. .|++|..+++
T Consensus 312 ---~-----------------------------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 312 ---I-----------------------------------SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred ---c-----------------------------------eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC
Confidence 0 012234467889999999999999999886 9999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
|..|.+++.|.+ ++++|+++. ...+.|.-..-.+.+....++||||+.|+|+||.||.|+||++.++
T Consensus 353 g~~lLsssRDdt-l~viDlRt~------------eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 353 GLELLSSSRDDT-LKVIDLRTK------------EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CeEEeeecCCCc-eeeeecccc------------cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999999999987 899999885 3455554322223345889999999999999999999999999887
Q ss_pred CCceeecc
Q 003336 413 GGSVNFQP 420 (828)
Q Consensus 413 gg~~~~~~ 420 (828)
...-.+..
T Consensus 420 KlE~~l~~ 427 (459)
T KOG0288|consen 420 KLEKVLSL 427 (459)
T ss_pred eEEEEecc
Confidence 66655554
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.56 E-value=4.8e-13 Score=144.63 Aligned_cols=268 Identities=13% Similarity=0.192 Sum_probs=172.8
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEE-ecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQM-LPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~-lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.+.+|..+|++..+|||.. |+...++..|.++++.+.. .+++.. .++ ++.+
T Consensus 115 ~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~------------~~f--vsas------------ 166 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSS------------CLF--VSAS------------ 166 (423)
T ss_pred CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCcc------------ceE--EEec------------
Confidence 4899999999999999986 6899999999999996655 444321 123 2221
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEE-----eCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCce
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML-----KFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEI 167 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL-----~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~ 167 (828)
.+.++++|-..-++.+-.. .+...|.+|+.+ .+++..+.|.+|.||+.. .+.
T Consensus 167 -------------------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~-~~~ 226 (423)
T KOG0313|consen 167 -------------------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE-TDE 226 (423)
T ss_pred -------------------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC-CCc
Confidence 2278999988877654332 346789999974 345555789999999932 222
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
..+++...+.. |-.+-.. ...++..|- +
T Consensus 227 ~~~~E~~s~~r-------------------rk~~~~~-----~~~~~r~P~-----------------v----------- 254 (423)
T KOG0313|consen 227 EDELESSSNRR-------------------RKKQKRE-----KEGGTRTPL-----------------V----------- 254 (423)
T ss_pred cccccccchhh-------------------hhhhhhh-----hcccccCce-----------------E-----------
Confidence 23333222100 0000000 000000000 0
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL 327 (828)
..-|++. .++. + ..++ +++..+.+.|.+|+.||+.++..+.++... .++.|+
T Consensus 255 ----tl~GHt~--~Vs~------------V--~w~d-------~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i 306 (423)
T KOG0313|consen 255 ----TLEGHTE--PVSS------------V--VWSD-------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCI 306 (423)
T ss_pred ----Eeccccc--ceee------------E--EEcC-------CCceEeecccceEEEEEeecccceeeeecC-cceeEe
Confidence 0001110 0000 0 0000 012335678999999999999998888764 579999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC-CEEEEEeCCCcEEE
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHL 406 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAs~S~DGTVhI 406 (828)
..+|...|||+||.|.+ |++||-+++ .+ +.. ...| -||.+ .|..+.|+|.. ..|+++|.|+|+++
T Consensus 307 ~~~~~~~Ll~~gssdr~-irl~DPR~~-~g---------s~v-~~s~-~gH~n-wVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRH-IRLWDPRTG-DG---------SVV-SQSL-IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred ecccccceeeecCCCCc-eeecCCCCC-CC---------cee-EEee-ecchh-hhhheecCCCCceEEEEEecCCeEEE
Confidence 99999999999999987 999999886 21 222 2344 36665 69999999955 56889999999999
Q ss_pred EecCCCC-CceeeccCCCCCC
Q 003336 407 FAINPLG-GSVNFQPTDANFT 426 (828)
Q Consensus 407 wdl~~~g-g~~~~~~H~~~~~ 426 (828)
||+.... ....+.+|.+.+-
T Consensus 373 WDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred EEeccCCCcceeeccCCceEE
Confidence 9999877 4568889966543
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=136.63 Aligned_cols=176 Identities=18% Similarity=0.274 Sum_probs=134.1
Q ss_pred CEEEEEECCCC---cEEEEEe--CCCCEEEEEEc--CCEEEE-EeCCEEEEEECC--CCceEEEEEcCCCccCCCCCCCC
Q 003336 117 TVVHFYSLRSQ---SYVHMLK--FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGI 186 (828)
Q Consensus 117 ~tVrlWDL~Tg---~~V~tL~--f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~--t~~~l~tL~t~p~~~~~p~~~~~ 186 (828)
++||+|++..+ .+...|. +...|++|+++ +++||+ ++|.++.||--. +++++.+|++|.+..-+
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~------ 110 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKC------ 110 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeE------
Confidence 78999999853 3444442 46789999996 789987 689999999766 56789999998664321
Q ss_pred CcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccc
Q 003336 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (828)
Q Consensus 187 ~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~ 266 (828)
+|++. +|.+
T Consensus 111 -------------Vaws~---------------------------sG~~------------------------------- 119 (312)
T KOG0645|consen 111 -------------VAWSA---------------------------SGNY------------------------------- 119 (312)
T ss_pred -------------EEEcC---------------------------CCCE-------------------------------
Confidence 22321 1111
Q ss_pred ccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC
Q 003336 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASVQG 343 (828)
Q Consensus 267 ~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s---~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG 343 (828)
+++.+.|..|-||.+.. ..+++.|+.|++.|--+.|.|.-.+|+++|.|.
T Consensus 120 ---------------------------LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 120 ---------------------------LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred ---------------------------EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 12234566788998874 368899999999999999999999999999998
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 344 t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+ |++|+-.++ ..-.+..+|. |++. .|++++|.+.|..|+++++|+|++||.+-
T Consensus 173 T-Ik~~~~~~d-----------ddW~c~~tl~-g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 173 T-IKVYRDEDD-----------DDWECVQTLD-GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred e-EEEEeecCC-----------CCeeEEEEec-Cccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 7 999987743 1235666774 5543 69999999999999999999999999964
No 70
>PTZ00421 coronin; Provisional
Probab=99.56 E-value=7e-13 Score=153.81 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=87.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++.||.|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||++.+ ..+.+
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg--------------~~v~t 205 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDG--------------TIVSS 205 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCC--------------cEEEE
Confidence 345667899999999999999999999999999999999999999999998 899999875 33445
Q ss_pred EecCCccccEEEEEEccCCCEEEEEe----CCCcEEEEecCCCCCce
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPLGGSV 416 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S----~DGTVhIwdl~~~gg~~ 416 (828)
+. ++....+..+.|.+++..|++++ .|++|+|||+.......
T Consensus 206 l~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 206 VE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred Ee-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 53 44444467788999988887654 47999999998654443
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.1e-13 Score=161.11 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=148.6
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL-~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|++||.+=+.+++.+ .+.++|+.|.|. ..+++. +.|-+|++|+..+-+|+++|.+|-+ +
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD---Y------------ 95 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD---Y------------ 95 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc---e------------
Confidence 78999999999999877 468899999996 345555 4456999999999999999988732 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+ |.+.|. ++.
T Consensus 96 V----Rt~~FH-------------hey----------------------------------------------------- 105 (1202)
T KOG0292|consen 96 V----RTVFFH-------------HEY----------------------------------------------------- 105 (1202)
T ss_pred e----EEeecc-------------CCC-----------------------------------------------------
Confidence 0 222222 100
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
+ =+.++++|-+|+||+..++++++.+.+|.+.|.|..|.|.-.++++||-|.+ |||||+.
T Consensus 106 ----------P---------WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT-VRVWDis 165 (1202)
T KOG0292|consen 106 ----------P---------WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT-VRVWDIS 165 (1202)
T ss_pred ----------c---------eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce-EEEEeec
Confidence 0 0234567889999999999999999999999999999999999999999987 8999985
Q ss_pred CCC-----CC--------CCCccCCCC--ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC--c
Q 003336 353 PGI-----LG--------TSSACDAGT--SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG--S 415 (828)
Q Consensus 353 ~~~-----~~--------~~~~~~~~~--~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg--~ 415 (828)
--. ++ .+.+.+..+ ...-.+.| .||+. .|+-++|.|.-..|++|++|+-|++|.++...- .
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-ccccc-ccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 321 11 000011111 12222344 57664 389999999999999999999999999987543 1
Q ss_pred eeeccCCCCCC
Q 003336 416 VNFQPTDANFT 426 (828)
Q Consensus 416 ~~~~~H~~~~~ 426 (828)
-+.++|.++..
T Consensus 244 DtcrgH~nnVs 254 (1202)
T KOG0292|consen 244 DTCRGHYNNVS 254 (1202)
T ss_pred hhhhcccCCcc
Confidence 25567766544
No 72
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.53 E-value=3e-14 Score=154.91 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=176.4
Q ss_pred eeee-cccCCCCC--------CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCC
Q 003336 6 GFDK-LESEAGAT--------RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP 75 (828)
Q Consensus 6 ~fd~-l~~~~~~~--------~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rP 75 (828)
-|+. |..|++++ ...++.|-.+| +++|+.+- +++..+-..|...||+++|.|+ ...|
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpn-------DskF----- 195 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPN-------DSKF----- 195 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCC-------Ccee-----
Confidence 3555 34566543 66788888777 89999876 4565555556699999999984 1233
Q ss_pred EEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC-CEEEEEEc--CCEEEEE
Q 003336 76 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAIC 152 (828)
Q Consensus 76 LLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S--~riLAVs 152 (828)
+-|++ | ++|+|||..-.+.-..|.-+. -|.++++. +.+||++
T Consensus 196 --~t~Sd----------D-----------------------g~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 196 --LTCSD----------D-----------------------GTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred --EEecC----------C-----------------------CeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 33443 2 789999999888777776544 78999996 5577774
Q ss_pred -eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccC
Q 003336 153 -QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 231 (828)
Q Consensus 153 -~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s 231 (828)
-|..|++||.++++|+-++..|.+. .+++ -|. |
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKnt--------------Vl~~-----~f~-------------~-------------- 274 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNT--------------VLAV-----KFN-------------P-------------- 274 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccce--------------EEEE-----EEc-------------C--------------
Confidence 4568999999999999998877541 1221 010 0
Q ss_pred CCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC
Q 003336 232 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK 311 (828)
Q Consensus 232 ~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~ 311 (828)
++. -+++++.|..++++|+++.
T Consensus 275 n~N----------------------------------------------------------~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 275 NGN----------------------------------------------------------WLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred CCC----------------------------------------------------------eeEEccCCceEEEEehhHh
Confidence 000 1234566789999999999
Q ss_pred cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc
Q 003336 312 NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 390 (828)
+.+..+++|+..|.+++|+| .-.+|.+|+.||. |..|.+... ..+-.+.-++. ..|++++|.|
T Consensus 297 kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~--------------~p~~~i~~AHd-~~iwsl~~hP 360 (464)
T KOG0284|consen 297 KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLE--------------EPLGEIPPAHD-GEIWSLAYHP 360 (464)
T ss_pred HHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccc--------------ccccCCCcccc-cceeeeeccc
Confidence 99999999999999999999 6779999999998 788988632 11222222333 2499999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 391 DSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 391 Dg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
=|.+||+||.|.|++.|.-...+..
T Consensus 361 lGhil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred cceeEeecCCCcceeeeccCCCCCc
Confidence 9999999999999999987765443
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.4e-13 Score=151.30 Aligned_cols=230 Identities=17% Similarity=0.200 Sum_probs=167.3
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.....|++|+.+| ++|||+......+.+-..|.+.|.++++-. .++.++.. |
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~-----------------~~lssGsr---------~- 279 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS-----------------SVLSSGSR---------D- 279 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC-----------------ceEEEecC---------C-
Confidence 3489999999998 899999986666666666888899888742 23333321 1
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEE-Ee-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHM-LK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~t-L~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~ 169 (828)
+.|.++|++..+.+.. ++ +...|+.++++ .+.+|. ..|+.++|||..+.+.++
T Consensus 280 ----------------------~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 280 ----------------------GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred ----------------------CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 6799999999877665 55 57799999997 688887 678899999998888889
Q ss_pred EEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
++.+|... + +-||+++ .+ ..+ ||.
T Consensus 338 ~~~~H~aA------------V-------KA~awcP-------------~q-------------~~l-----------LAs 361 (484)
T KOG0305|consen 338 TFTEHTAA------------V-------KALAWCP-------------WQ-------------SGL-----------LAT 361 (484)
T ss_pred EEecccee------------e-------eEeeeCC-------------Cc-------------cCc-----------eEE
Confidence 98887421 1 1133431 10 000 111
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
| .+..|+.|++||..+++.+..+... +-|..|.|
T Consensus 362 G---------------------------------------------GGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~W 395 (484)
T KOG0305|consen 362 G---------------------------------------------GGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIW 395 (484)
T ss_pred c---------------------------------------------CCCcccEEEEEEcCCCcEecccccC-CceeeEEE
Confidence 0 1357899999999999988877643 57999999
Q ss_pred cCCCCEEEEE-ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 330 DPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 330 SPdG~lLATa-S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
++..+-|+++ +.-...|.||+..+. ..+..+ -||+ ..|..+++||||..|++|+.|.|+++|.
T Consensus 396 sk~~kEi~sthG~s~n~i~lw~~ps~--------------~~~~~l-~gH~-~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 396 SKKYKELLSTHGYSENQITLWKYPSM--------------KLVAEL-LGHT-SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cCCCCEEEEecCCCCCcEEEEecccc--------------ceeeee-cCCc-ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 9998766654 322234899998653 233344 4665 4599999999999999999999999999
Q ss_pred cCCC
Q 003336 409 INPL 412 (828)
Q Consensus 409 l~~~ 412 (828)
+=+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 9665
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.2e-14 Score=151.82 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=105.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
++++..||.|+||.+.+|.|+..|. +|+..|+||.||.|+..+.++|.|-+ +||--+..| .+|.
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSG--------------K~LK 342 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSG--------------KCLK 342 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccc--------------hhHH
Confidence 3566789999999999999999998 99999999999999999999999976 899888776 5566
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCCcccCCCCccceecCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPP 441 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~ 441 (828)
+| |||+. -|+...|++||.++.++|+||||+||+..+..+..+|+.-. ...+++.+.-.|.
T Consensus 343 Ef-rGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 343 EF-RGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------TDYPVNSVILLPK 403 (508)
T ss_pred Hh-cCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC------CcccceeEEEcCC
Confidence 66 78865 49999999999999999999999999999988888877532 2445666655543
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-12 Score=149.19 Aligned_cols=237 Identities=16% Similarity=0.198 Sum_probs=183.1
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+|++|....+.+|+-.. +.+.+++..+...|..+.+.+.+ ..|||...
T Consensus 188 ~n~laValg~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~G--------------~~LavG~~--------------- 237 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASS-GSVTELCSFGEELVTSVKWSPDG--------------SHLAVGTS--------------- 237 (484)
T ss_pred CCeEEEEecceEEEEecCC-CceEEeEecCCCceEEEEECCCC--------------CEEEEeec---------------
Confidence 6799999999999999987 77899998888999999988753 14554442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC--CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEE-EEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYA-ILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~t-L~t 173 (828)
.++|.|||..+.+.+.++.. ...|-+++++..++.. ..++.|.++|++..+.... +..
T Consensus 238 ------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 238 ------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred ------------------CCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 17899999999999999987 6689999999777766 5678999999998764333 322
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|... +-||.+
T Consensus 300 H~qe----------------------------------------------------------------------VCgLkw 309 (484)
T KOG0305|consen 300 HRQE----------------------------------------------------------------------VCGLKW 309 (484)
T ss_pred ccce----------------------------------------------------------------------eeeeEE
Confidence 2110 001111
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-C
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S 332 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-d 332 (828)
--|. ..++++++|..|.|||.....++.+|..|+..|-+|+|+| .
T Consensus 310 s~d~----------------------------------~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 310 SPDG----------------------------------NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred CCCC----------------------------------CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 1010 1245678899999999999999999999999999999999 7
Q ss_pred CCEEEEE--ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEE--EeCCCcEEEEe
Q 003336 333 GILLVTA--SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI--SSSRGTSHLFA 408 (828)
Q Consensus 333 G~lLATa--S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs--~S~DGTVhIwd 408 (828)
..+|||| +.|++ |++|++.++ .++..+ .+...|.+|.||+..+-|++ |..+.-|.||+
T Consensus 356 ~~lLAsGGGs~D~~-i~fwn~~~g--------------~~i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 356 SGLLATGGGSADRC-IKFWNTNTG--------------ARIDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred cCceEEcCCCcccE-EEEEEcCCC--------------cEeccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 8899996 56776 999999886 333333 34567999999999876665 45677899999
Q ss_pred cCCCCCceeeccCCCC
Q 003336 409 INPLGGSVNFQPTDAN 424 (828)
Q Consensus 409 l~~~gg~~~~~~H~~~ 424 (828)
+.+......+.+|+..
T Consensus 418 ~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 418 YPSMKLVAELLGHTSR 433 (484)
T ss_pred ccccceeeeecCCcce
Confidence 9998888899999764
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.51 E-value=3.2e-13 Score=160.88 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=160.9
Q ss_pred ccccC--CCCeEEEEECCC------------CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC----C
Q 003336 294 FPDAD--NVGMVIVRDIVS------------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG----I 355 (828)
Q Consensus 294 ~~s~~--~dG~V~IwDl~s------------~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~----~ 355 (828)
|++++ .||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+|+. |.||+-... .
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-v~iW~~~~~~~~~~ 106 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-VMIWERAEIGSGTV 106 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce-EEEeeecccCCccc
Confidence 34455 677888998653 3467888999999999999999999999999965 899998751 0
Q ss_pred CCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCC---------
Q 003336 356 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT--------- 426 (828)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~--------- 426 (828)
+|+++ +..+-+.++.+...|||. ..|.+++||||+.+||++|.|++|+||+..+++....+++|+..+-
T Consensus 107 fgs~g-~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 107 FGSTG-GAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK 184 (942)
T ss_pred ccccc-cccccceeeEEEEEecCC-CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC
Confidence 11111 111112233334447875 5699999999999999999999999999999977778888885311
Q ss_pred ---------------------------cccCCCCccceecCCCCCCCCCCcccccCCCCceeeeeeEEEecCCCCCC---
Q 003336 427 ---------------------------TKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWR--- 476 (828)
Q Consensus 427 ---------------------------~~~~~~~~~~~r~~~~s~~~~~~q~~~~~~~~p~~ls~v~~i~~~~~~~~--- 476 (828)
+|...+..+.+++..|++.+ ++.+.|++-+-+.+.+++|.+++ |.
T Consensus 185 y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG---~~las~nA~n~~~~~~~IieR~t--Wk~~~ 259 (942)
T KOG0973|consen 185 YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG---HHLASPNAVNGGKSTIAIIERGT--WKVDK 259 (942)
T ss_pred eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc---CeecchhhccCCcceeEEEecCC--ceeee
Confidence 11134667788999999998 77777777788889999999965 64
Q ss_pred ------CcccCcccccc--------CCcCCCC--Cceee--------eeeccCCCCcccccCC-----c-----cccccc
Q 003336 477 ------GTVSGAAAAAT--------GRVSSLS--GAIAS--------SFHNCKGNSETYAAGS-----S-----LKIKNH 522 (828)
Q Consensus 477 ------~~v~~~a~~~~--------g~~~~~~--g~~~~--------~~~~~~~~~~~~~~~~-----~-----~~~~~~ 522 (828)
+.|.=+++.|. |.+..+. =+|+| +.++..-.-|++.-.+ . ...--.
T Consensus 260 ~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 260 DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS 339 (942)
T ss_pred eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe
Confidence 34443444443 1111110 01221 1121111111221110 0 234568
Q ss_pred EEEEccCccEEEEeeeecc
Q 003336 523 LLVFSPSGCMIQYALRIST 541 (828)
Q Consensus 523 l~v~~p~g~~~qy~l~~~~ 541 (828)
||+++-+|.+.+..+...-
T Consensus 340 LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 340 LFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEEecCCeEEEEEcchHH
Confidence 9999999999999988774
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=1e-11 Score=144.58 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=89.9
Q ss_pred cCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC------CCCCc------
Q 003336 297 ADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL------GTSSA------ 361 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f---~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~------~~~~~------ 361 (828)
+...|.|-+|++++|-....| ++|..+|+.|+.+--+++++||+.+|. ++.||...... +.+..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 456799999999999888888 699999999999999999999999997 89999877521 11000
Q ss_pred -cCC-----CCceeEEEE--------EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 362 -CDA-----GTSYVHLYR--------LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 362 -~~~-----~~~~~~l~~--------L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
++. ..-.-.++. --+||+ .+|++++|||||+||++++.|+||++||+.+....-.+
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 000 000011111 114665 46999999999999999999999999999886554444
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.51 E-value=1.3e-12 Score=143.87 Aligned_cols=114 Identities=16% Similarity=0.277 Sum_probs=88.0
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCC-CCceeE
Q 003336 294 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDA-GTSYVH 370 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~-~~~~~~ 370 (828)
+++++.|++|.+||+++. +++.+|..|...|.+|.|||. -+.|||++.|++ ++|||+..- ....+..+. .+..+.
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i-g~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI-GEEQSPEDAEDGPPEL 365 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc-ccccChhhhccCCcce
Confidence 456678999999999974 588999999999999999995 779999999998 799999753 111111111 122333
Q ss_pred EEEEecCCccccEEEEEEccCCCE-EEEEeCCCcEEEEecCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINP 411 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~-LAs~S~DGTVhIwdl~~ 411 (828)
| =.++||+ +.|.+++|.|+-.| ||+++.|+.++||+...
T Consensus 366 l-F~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 366 L-FIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred e-EEecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3 4568887 46999999998887 66788999999999874
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.51 E-value=1.6e-12 Score=140.58 Aligned_cols=225 Identities=15% Similarity=0.264 Sum_probs=161.5
Q ss_pred cEEEEEccCCeEEEEecCCCceeEe---eeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDL---VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~el---lS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.++..|-+..+.+|-.+......+. ...|.++|-++..++.+. .+|+++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt----------------r~~SgS------------ 212 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT----------------RFCSGS------------ 212 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC----------------eEEeec------------
Confidence 5778888888999999875444333 346888999998876431 134433
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEEC-------------------------CCCcEEEEEe-CCCCEEEEEEc--CC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSL-------------------------RSQSYVHMLK-FRSPIYSVRCS--SR 147 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL-------------------------~Tg~~V~tL~-f~s~V~sV~~S--~r 147 (828)
++++|+||+. .++..+-+|. +..+|-+|.|+ .-
T Consensus 213 -------------------~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v 273 (423)
T KOG0313|consen 213 -------------------WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV 273 (423)
T ss_pred -------------------ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc
Confidence 3377788871 1223444454 46799999997 45
Q ss_pred EEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccc
Q 003336 148 VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS 227 (828)
Q Consensus 148 iLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s 227 (828)
++.++.|.+|+.||+.++.++-++.+.. .++.+ +|...
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~k-------------sl~~i-------~~~~~---------------------- 311 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNK-------------SLNCI-------SYSPL---------------------- 311 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCc-------------ceeEe-------ecccc----------------------
Confidence 5667889999999999999988887632 11111 22210
Q ss_pred cccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEE
Q 003336 228 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD 307 (828)
Q Consensus 228 ~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwD 307 (828)
+..+++++.|..++|||
T Consensus 312 ---------------------------------------------------------------~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 312 ---------------------------------------------------------------SKLLASGSSDRHIRLWD 328 (423)
T ss_pred ---------------------------------------------------------------cceeeecCCCCceeecC
Confidence 00123456678899999
Q ss_pred CCCCc---EEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccE
Q 003336 308 IVSKN---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 383 (828)
Q Consensus 308 l~s~~---~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I 383 (828)
-+++. +..+|.+|+.-|+++.++|. -.+|+++|.||+ +++||++.. ...||.+.+. ..+|
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~-------------k~plydI~~h--~DKv 392 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST-------------KAPLYDIAGH--NDKV 392 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC-------------CCcceeeccC--CceE
Confidence 88753 56789999999999999995 457999999998 899999874 2358888754 3469
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 384 QDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 384 ~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.++.|+. +..|++|+.|.+++||.-.+.
T Consensus 393 l~vdW~~-~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 393 LSVDWNE-GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred EEEeccC-CceEEeccCcceEEEeccccc
Confidence 9999974 568999999999999987654
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.8e-13 Score=139.30 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=152.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+++..-++.+||||+....+....+..|...|..+.+-+. +....+.+ +
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--------------~r~~~lts-S-------------- 124 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--------------RRRIFLTS-S-------------- 124 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc--------------cceeEEee-c--------------
Confidence 455555555668888876655544455556666665554321 11112222 2
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCceEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL~ 172 (828)
+++||||||..-++-+++++- .+.||...|+ +.+++. +.++..++||++..-....+.
T Consensus 125 -----------------WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 125 -----------------WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred -----------------cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 559999999999999999875 6799999998 567776 678899999987543333343
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|... ++.-.|
T Consensus 188 ah~~E----------------il~cdw----------------------------------------------------- 198 (311)
T KOG0277|consen 188 AHNSE----------------ILCCDW----------------------------------------------------- 198 (311)
T ss_pred eccce----------------eEeecc-----------------------------------------------------
Confidence 33110 000000
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP 331 (828)
++|- ...+++++.|+.|++||+++. .++..+.+|.-.|..|+|||
T Consensus 199 ----------~ky~------------------------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 199 ----------SKYN------------------------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred ----------cccC------------------------CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 0000 002356778999999999974 58889999999999999999
Q ss_pred C-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 003336 332 S-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 332 d-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwd 408 (828)
. ..+|||||.|=+ +||||.... . +....+.. |+ .-|..+.||+ +..++|+++=|+++.||+
T Consensus 245 h~~~lLaSasYDmT-~riw~~~~~-d----------s~~e~~~~---Ht-EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 245 HHASLLASASYDMT-VRIWDPERQ-D----------SAIETVDH---HT-EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred chhhHhhhccccce-EEecccccc-h----------hhhhhhhc---cc-eEEeccccccccCceeeecccccceeeec
Confidence 5 569999999987 899998854 0 11111221 22 2378888987 888999999999999997
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.46 E-value=1.3e-11 Score=128.63 Aligned_cols=172 Identities=15% Similarity=0.266 Sum_probs=132.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
..|.+.|.++.+.+++.+|+-.+..+.++ ..++.. ...+.|.|.....++.+++|..||.- .+
T Consensus 128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn--------------Ci 193 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN--------------CI 193 (313)
T ss_pred ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc--------------eE
Confidence 56899999999999999999999999886 444443 44589999999999999999988631 12
Q ss_pred eeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCC
Q 003336 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (828)
Q Consensus 194 Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~ 273 (828)
+ |.+.. .|+
T Consensus 194 c-----I~f~p---------------------------~Gr--------------------------------------- 202 (313)
T KOG1407|consen 194 C-----IEFDP---------------------------DGR--------------------------------------- 202 (313)
T ss_pred E-----EEECC---------------------------CCc---------------------------------------
Confidence 2 12210 111
Q ss_pred CCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCC
Q 003336 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 274 ~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~ 353 (828)
.|+.++.|-.|.+||+...-+++.|..|.-||..|.||.||++||+||.| +.|-|=++.+
T Consensus 203 -------------------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED-h~IDIA~vet 262 (313)
T KOG1407|consen 203 -------------------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED-HFIDIAEVET 262 (313)
T ss_pred -------------------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc-ceEEeEeccc
Confidence 23345567789999999999999999999999999999999999999999 4588877777
Q ss_pred CCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC---------CcEEEEecC
Q 003336 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR---------GTSHLFAIN 410 (828)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D---------GTVhIwdl~ 410 (828)
| .++++.+ ..+..+.|+|.|...+||-+.+| |+++||-+.
T Consensus 263 G--------------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 G--------------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred C--------------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 6 3455553 23457899999999999998876 566666543
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.46 E-value=1.6e-13 Score=151.92 Aligned_cols=176 Identities=14% Similarity=0.208 Sum_probs=139.0
Q ss_pred CCEEEEEECCC-CcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 116 PTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 116 ~~tVrlWDL~T-g~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
++.|+||++.. +.+++++.. ..+|.+++|+ .++|.+++|..|++||++||+++.++.+...+
T Consensus 236 D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~------------- 302 (503)
T KOG0282|consen 236 DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP------------- 302 (503)
T ss_pred CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc-------------
Confidence 38999999987 899999875 5699999998 57888999999999999999999888653210
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
..+ -| -
T Consensus 303 --~cv-----kf-------------------------------------------------------------------~ 308 (503)
T KOG0282|consen 303 --TCV-----KF-------------------------------------------------------------------H 308 (503)
T ss_pred --eee-----ec-------------------------------------------------------------------C
Confidence 000 00 1
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
|++ ...|..+..++.|+.||+++++.+..+..|-++|..+.|=++|+.++|+|+|++ ++||+
T Consensus 309 pd~-----------------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riWe 370 (503)
T KOG0282|consen 309 PDN-----------------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIWE 370 (503)
T ss_pred CCC-----------------CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEEE
Confidence 111 012445677899999999999999999999999999999999999999999997 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.... +.+-+...-. .+..-+|..+|.++|++.-|.|..|-||.+.+
T Consensus 371 ~~~~-------------v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 371 NRIP-------------VPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred cCCC-------------ccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 9875 1121222211 22367899999999999999999999999765
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.46 E-value=5.7e-12 Score=146.67 Aligned_cols=174 Identities=15% Similarity=0.275 Sum_probs=131.9
Q ss_pred CCCEEEEEECCCCcEEEEE----eCCCCEEEEEEc--CC-EEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCC
Q 003336 115 VPTVVHFYSLRSQSYVHML----KFRSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 187 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL----~f~s~V~sV~~S--~r-iLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~ 187 (828)
..++|-+|++++|-..+++ -+..+|.+|++. .+ +++.++++-+.+||..+...+.++.-. ++
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----~~------ 536 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----SS------ 536 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----CC------
Confidence 3489999999999999988 457899999995 33 444578899999999988766666421 10
Q ss_pred cccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccc
Q 003336 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (828)
Q Consensus 188 ~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~ 267 (828)
+ ..+.|. ..
T Consensus 537 -----~----~~iv~h---------------------------------------------------------r~----- 545 (910)
T KOG1539|consen 537 -----I----TGIVYH---------------------------------------------------------RV----- 545 (910)
T ss_pred -----c----ceeeee---------------------------------------------------------eh-----
Confidence 0 001111 00
Q ss_pred cccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 268 ~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
.+.++.+..+-.|+|+|..+.+.++.|.+|...|++++|||||++|++|+.|++ ||
T Consensus 546 -----------------------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir 601 (910)
T KOG1539|consen 546 -----------------------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IR 601 (910)
T ss_pred -----------------------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EE
Confidence 001222345668999999999999999999999999999999999999999998 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINP 411 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~ 411 (828)
+||+.++ ..+.-+. ......++.|||+|.+||++..| .-|.+|.=..
T Consensus 602 ~wDlpt~--------------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 602 TWDLPTG--------------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEeccCc--------------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999987 3444442 23457899999999999999988 6789997543
No 84
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.8e-11 Score=126.59 Aligned_cols=239 Identities=15% Similarity=0.252 Sum_probs=157.2
Q ss_pred EEEEEccCCeEEEEecCCC--ceeEeee-eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 20 VLLLGYRSGFQVWDVEEAD--NVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 20 vLl~Gy~~G~qVWdv~~~~--~~~ellS-~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+-..|.++.++||+..... .++.+++ .|...||.+++.|.+ .+||..+-
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--------------~~La~aSF-------------- 81 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--------------RYLASASF-------------- 81 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--------------cEEEEeec--------------
Confidence 4445556779999998411 3444554 578899999998853 15553331
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCC--cEEEEEeC-CCCEEEEEEc--CCEEEEE-eCCEEEEEECCCC---ce
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCS--SRVVAIC-QAAQVHCFDAATL---EI 167 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg--~~V~tL~f-~s~V~sV~~S--~riLAVs-~~~~I~IwDl~t~---~~ 167 (828)
+.|+.||.-..+ +++.+|+- .+.|.+|+|+ +++||.| -++.|.||.+... ++
T Consensus 82 -------------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 82 -------------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred -------------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 267888876544 67888875 6799999996 8999985 4778999988743 34
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
+-.|..|.. -|+++...-++
T Consensus 143 ~aVL~~Htq----------------------------------------------------------DVK~V~WHPt~-- 162 (312)
T KOG0645|consen 143 IAVLQEHTQ----------------------------------------------------------DVKHVIWHPTE-- 162 (312)
T ss_pred Eeeeccccc----------------------------------------------------------cccEEEEcCCc--
Confidence 444444421 01111100000
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECC---CCcEEEEeccCCCCe
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV---SKNVIAQFRAHKSPI 324 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~---s~~~i~~f~aH~~pI 324 (828)
..+++++.|.+|++|+-. .-.++++|.+|...|
T Consensus 163 --------------------------------------------dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 163 --------------------------------------------DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV 198 (312)
T ss_pred --------------------------------------------ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence 123456678899999766 236899999999999
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCC-------------CccCCCCceeEEEEEec--------------C
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTS-------------SACDAGTSYVHLYRLQR--------------G 377 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~-------------~~~~~~~~~~~l~~L~R--------------G 377 (828)
.+++|+|.|..|++++.|++ ++||.....-.+.. -+...+...-.||+-.. +
T Consensus 199 W~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred EEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 99999999999999999998 89998554311111 00111111122222111 1
Q ss_pred CccccEEEEEEccC-CCEEEEEeCCCcEEEEecC
Q 003336 378 LTNAVIQDISFSDD-SNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 378 ~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~ 410 (828)
.+.-.|++|.|.|. ..+|+++++||+|++|.+.
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11124899999995 7899999999999999874
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.46 E-value=1.8e-12 Score=144.31 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=82.9
Q ss_pred ccccCCCCeEEEEECCCC--cEEEE-eccCCC--CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 294 FPDADNVGMVIVRDIVSK--NVIAQ-FRAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~--~~i~~-f~aH~~--pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
++.+..||.|.+||..+. .+... -+||.. .|+||+||+||++|++-+.|++ ++|||++.. .
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~-------------k 397 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF-------------K 397 (641)
T ss_pred hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc-------------c
Confidence 445678999999998653 33333 349987 8999999999999999999998 899999875 1
Q ss_pred eEEEEEecCC-ccccEEEEEEccCCCEEEEEeC------CCcEEEEecCCCCCceeec
Q 003336 369 VHLYRLQRGL-TNAVIQDISFSDDSNWIMISSS------RGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 369 ~~l~~L~RG~-t~a~I~sIaFSpDg~~LAs~S~------DGTVhIwdl~~~gg~~~~~ 419 (828)
..|... -|. +...-.++|||||.++|++|++ -|++.+||-.++.....+-
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 233332 222 2233678999999999999886 3778888888876555543
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.45 E-value=1.3e-12 Score=145.47 Aligned_cols=113 Identities=16% Similarity=0.327 Sum_probs=86.7
Q ss_pred CcccccCCCCeEEEEECCCC-cEEEEec-----cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCC
Q 003336 292 GHFPDADNVGMVIVRDIVSK-NVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~-~~i~~f~-----aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~ 365 (828)
..|.+.+.||++||||+..- +.+..|+ +-.-+++..+|+|||+++|+|..||. |.+||....
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~----------- 349 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR----------- 349 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc-----------
Confidence 35778889999999999753 3333333 23457899999999999999999997 899997442
Q ss_pred CceeEEEEEecCCcc-ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 366 TSYVHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~-a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
.++..+..+..|.. ..|.+|+||+||++|++=+.|+|++||||..+.....
T Consensus 350 -~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 350 -TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred -ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 12333444444543 2499999999999999999999999999998766543
No 87
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=5.7e-13 Score=153.91 Aligned_cols=115 Identities=15% Similarity=0.251 Sum_probs=90.4
Q ss_pred cCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 297 ADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 297 ~~~dG~V~IwDl~s-~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+...|.+++||++. .++...|.||.+||.|+.|+|++.+||||+.|+. |+|||...+ ....+.+.
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~------------~~~~~~tI- 260 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDS------------RAKPKHTI- 260 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCC------------CccceeEE-
Confidence 34568999999985 5678889999999999999999999999999997 899998754 11233344
Q ss_pred cCCccccEEEEEEccCCCE-EEEEeC--CCcEEEEecC-CCCCceeeccCCCCCCc
Q 003336 376 RGLTNAVIQDISFSDDSNW-IMISSS--RGTSHLFAIN-PLGGSVNFQPTDANFTT 427 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~-LAs~S~--DGTVhIwdl~-~~gg~~~~~~H~~~~~~ 427 (828)
.|.+.|..|.|-|+-++ ||+++. |-.|||||+. ||-.-++|..|++....
T Consensus 261 --nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 261 --NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred --eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 24577999999997665 666653 6789999996 45555788899877663
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.45 E-value=7.4e-12 Score=137.33 Aligned_cols=228 Identities=15% Similarity=0.244 Sum_probs=159.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+|.+|-+...-++|... +....++..|.-.|..+.+-|. +.++..++
T Consensus 232 ~~ilTGG~d~~av~~d~~s-~q~l~~~~Gh~kki~~v~~~~~----------------~~~v~~aS-------------- 280 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPS-NQILATLKGHTKKITSVKFHKD----------------LDTVITAS-------------- 280 (506)
T ss_pred CcceecCCCCceEEEecch-hhhhhhccCcceEEEEEEeccc----------------hhheeecC--------------
Confidence 5667777777899999876 4455666677777776666542 11122211
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+..|++|+.-...+...+. +..+|..+... +.++.. +.++.+.+.|++++.++.....
T Consensus 281 -----------------ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 281 -----------------ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred -----------------CcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 22679999998877766665 46789888874 666665 5566777889999987655533
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
-... +.+... +| +|
T Consensus 344 ~~s~----------v~~ts~-------~f-------------Hp------------------------------------ 357 (506)
T KOG0289|consen 344 ETSD----------VEYTSA-------AF-------------HP------------------------------------ 357 (506)
T ss_pred cccc----------ceeEEe-------eE-------------cC------------------------------------
Confidence 1100 111111 11 11
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
| |. .|.++..||.|+|||+.++..++.|.+|+++|.+|+|+-+|
T Consensus 358 ------------------D---------------gL---ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 358 ------------------D---------------GL---IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ------------------C---------------ce---EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 1 11 13345678999999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.+|||+.+||. |++||++.. ...+.+.+.. ...|.+++|.+.|++|++++.|=+|++++-.+
T Consensus 402 Y~Lat~add~~-V~lwDLRKl------------~n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 402 YWLATAADDGS-VKLWDLRKL------------KNFKTIQLDE---KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred eEEEEEecCCe-EEEEEehhh------------cccceeeccc---cccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 99999999987 899999875 1122333322 22489999999999999999988888888544
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.6e-13 Score=153.13 Aligned_cols=113 Identities=15% Similarity=0.298 Sum_probs=96.5
Q ss_pred cccCCCCeEEEEECCCC--cE--------EEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 003336 295 PDADNVGMVIVRDIVSK--NV--------IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~--~~--------i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
++++-|+.|.|||+.++ +. ...+. +|..+|.+|+-++.|+.+++|+..+- |++||-++.
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wDprt~--------- 203 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWDPRTC--------- 203 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEeccccc---------
Confidence 44567889999999976 22 22333 88999999999999999999999986 899998875
Q ss_pred CCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 364 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
.++.+|+ ||+. .|..+-.++||+.+.++|+||||+||||....+..++.-|...
T Consensus 204 -----~kimkLr-GHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 204 -----KKIMKLR-GHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred -----cceeeee-cccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 5677885 8874 5999999999999999999999999999999999999888764
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.43 E-value=1.8e-11 Score=127.85 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=136.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
.++.+|=-..|+.+-++.- ...|+++..+ +.++..+.|.++++||..+++++.++.+..-+..+ .
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~-----------~ 100 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV-----------D 100 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE-----------e
Confidence 5567888889999999975 6789998885 44555578889999999999999998763211000 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
|..+...+.++.++
T Consensus 101 F~~~gn~~l~~tD~------------------------------------------------------------------ 114 (327)
T KOG0643|consen 101 FSFGGNLILASTDK------------------------------------------------------------------ 114 (327)
T ss_pred eccCCcEEEEEehh------------------------------------------------------------------
Confidence 11111111111000
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN 345 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~-------s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~ 345 (828)
.-+..+.|.++|++ +..++..+..+.+.|+.+-|+|-|+.|++|..||.
T Consensus 115 -----------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~- 170 (327)
T KOG0643|consen 115 -----------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS- 170 (327)
T ss_pred -----------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-
Confidence 01234567777776 56778888999999999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 346 I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
|.+||+.++ ..+..-.+-|. +.|.+|+||+|..+++++|.|.|.++||+.+....-++.+
T Consensus 171 is~~da~~g--------------~~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 171 ISIYDARTG--------------KELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred EEEEEcccC--------------ceeeechhhhc-cccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 999999986 22223223333 4699999999999999999999999999998766666654
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=2.3e-12 Score=140.44 Aligned_cols=225 Identities=15% Similarity=0.265 Sum_probs=156.5
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeee-ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~-hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.|.+|++|++.-+.+||+++ |+.+..... +.-.|.++.+.|++ |. ++.+++
T Consensus 281 dryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg---------~~-------~V~Gs~----------- 332 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDG---------FR-------FVTGSP----------- 332 (519)
T ss_pred CCeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCC---------ce-------eEecCC-----------
Confidence 38999999999999999997 566655553 34578888888853 21 233322
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC--CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
++++..||+.- ..+...+. .-.|++++.+ +.+++|+.+.+|++|+..+..+...
T Consensus 333 --------------------dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l 391 (519)
T KOG0293|consen 333 --------------------DRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL 391 (519)
T ss_pred --------------------CCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc
Confidence 27899999854 33443333 2368899885 4567788899999999988765443
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+.++. + +..+.++ .++..+
T Consensus 392 ise~~---~----------its~~iS----------------------------------~d~k~~-------------- 410 (519)
T KOG0293|consen 392 ISEEQ---P----------ITSFSIS----------------------------------KDGKLA-------------- 410 (519)
T ss_pred ccccC---c----------eeEEEEc----------------------------------CCCcEE--------------
Confidence 33321 0 0011110 011110
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC--eEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP--ISALC 328 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~p--IsaLa 328 (828)
+ ..-.+..|++||++..+.+..+.+|+.. |-.-|
T Consensus 411 L--------------------------------------------vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 411 L--------------------------------------------VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred E--------------------------------------------EEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 0 0012457999999999999999999853 55557
Q ss_pred EcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEE
Q 003336 329 FDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHL 406 (828)
Q Consensus 329 FSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhI 406 (828)
|-- +.+++|+||.|+. |+||+...+ ..+..| .||.. .|++|+|+| |-.++|++|+||||+|
T Consensus 447 Fgg~~~~fiaSGSED~k-vyIWhr~sg--------------kll~~L-sGHs~-~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSK-VYIWHRISG--------------KLLAVL-SGHSK-TVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred cCCCCcceEEecCCCce-EEEEEccCC--------------ceeEee-cCCcc-eeeEEecCCCCHHHhhccCCCCeEEE
Confidence 865 6689999999998 899998876 445556 57764 499999999 6678999999999999
Q ss_pred EecCCC
Q 003336 407 FAINPL 412 (828)
Q Consensus 407 wdl~~~ 412 (828)
|-..+.
T Consensus 510 Wg~~~~ 515 (519)
T KOG0293|consen 510 WGPSDN 515 (519)
T ss_pred ecCCcc
Confidence 998765
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.41 E-value=2.8e-12 Score=135.69 Aligned_cols=105 Identities=16% Similarity=0.261 Sum_probs=89.5
Q ss_pred CeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 301 GMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f---~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
-++++||+.+.++...- ..|+..|+++.+|+.|++.+|||.||. |+|||--.. +++-++.+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~--------------rCv~t~~~A 302 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSN--------------RCVRTIGNA 302 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccH--------------HHHHHHHhh
Confidence 47899999998775443 379999999999999999999999998 999996654 566677777
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
|..+.|.+..|+.+|+||.+++.|.++++|.|.++.......+
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 7778899999999999999999999999999998766555544
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.40 E-value=9.3e-11 Score=123.35 Aligned_cols=176 Identities=15% Similarity=0.192 Sum_probs=122.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEE-EEE-eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riL-AVs-~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|++||+.+++.++.+.....+..+.++ ++.+ +++ .++.|++||+.+++.+..+..+..
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------------- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------
Confidence 78999999999999999876667788886 4555 333 467999999999887655532210
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+..+++.. ++..+
T Consensus 75 ----~~~~~~~~---------------------------~g~~l------------------------------------ 87 (300)
T TIGR03866 75 ----PELFALHP---------------------------NGKIL------------------------------------ 87 (300)
T ss_pred ----ccEEEECC---------------------------CCCEE------------------------------------
Confidence 01223321 11100
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
+++...++.|++||+.+.+.+..+..+ ..+.+++|+|+|++|++++.++..+.+||..
T Consensus 88 ---------------------~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 88 ---------------------YIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ---------------------EEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 111234678999999999888888743 3468899999999999999887767888987
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg 414 (828)
++ ..+..+..+ ..+..++|+|||++|++++ .+++|++||+.....
T Consensus 146 ~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 146 TY--------------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CC--------------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 64 222222222 2356799999999986554 599999999987543
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.6e-13 Score=140.76 Aligned_cols=206 Identities=16% Similarity=0.209 Sum_probs=147.8
Q ss_pred cCCCEEEEEECCCCcEEEEEeC---------CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEE-cCCCccCC
Q 003336 114 SVPTVVHFYSLRSQSYVHMLKF---------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL-TNPIVMGH 180 (828)
Q Consensus 114 ~~~~tVrlWDL~Tg~~V~tL~f---------~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~-t~p~~~~~ 180 (828)
+.++.|.+||..+|+..+.|++ ..+|.+|.|+ ...||. +.|++|+||.+.|++|++.+. .|..
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk---- 307 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK---- 307 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc----
Confidence 4569999999999999888864 5689999998 467776 789999999999999988875 3321
Q ss_pred CCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccce
Q 003336 181 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 260 (828)
Q Consensus 181 p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~ 260 (828)
+ ..+ |.|+- +.
T Consensus 308 --------G--vt~-----l~FSr-------------------------------------D~----------------- 318 (508)
T KOG0275|consen 308 --------G--VTC-----LSFSR-------------------------------------DN----------------- 318 (508)
T ss_pred --------C--eeE-----EEEcc-------------------------------------Cc-----------------
Confidence 1 111 12220 00
Q ss_pred eeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 003336 261 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 340 (828)
Q Consensus 261 ~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS 340 (828)
.++.+++.|-+|+|.-+.+|++++.|++|++.|+...|++||..+++||
T Consensus 319 -------------------------------SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 319 -------------------------------SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -------------------------------chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 1223456788999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCCCCCC----CCccCC-------CCceeEEEEEec-------------------CCc-cccEEEEEEc
Q 003336 341 VQGHNINIFKIIPGILGT----SSACDA-------GTSYVHLYRLQR-------------------GLT-NAVIQDISFS 389 (828)
Q Consensus 341 ~DGt~I~IWdi~~~~~~~----~~~~~~-------~~~~~~l~~L~R-------------------G~t-~a~I~sIaFS 389 (828)
.||+ |+||+..+..+-. .+..-+ -....|.....| |.. .....+.+.|
T Consensus 368 sDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEec
Confidence 9999 8999988752100 000000 000111111111 111 1124568899
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 390 DDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 390 pDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
|.|.|+-+.+.|+.+.-|.+..++-..++.-|.-.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd 481 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD 481 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeeccccc
Confidence 99999999999999999999988877777777543
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=3.9e-12 Score=144.83 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=88.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
++.|+..+.+++||-++++.+..+++|+..|.+|-.++||+.++|||.||+ ||+||+.-. +++.+
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ--------------rCl~T 250 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ--------------RCLAT 250 (735)
T ss_pred EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc--------------ceeee
Confidence 455677889999999999999999999999999999999999999999998 999999753 56666
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+. -|.. .|+.+.-+|+=+.+-+|+.||.|..=||..+
T Consensus 251 ~~-vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 251 YI-VHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EE-eccC-ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 53 2332 3999999999999999999999999999876
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.39 E-value=8.7e-12 Score=142.64 Aligned_cols=214 Identities=17% Similarity=0.349 Sum_probs=144.0
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc-----CCEEEEE-eCCEEEEEECC-CCceEEEEEcCCCccCCCCCCCCCc
Q 003336 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS-----SRVVAIC-QAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGI 188 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S-----~riLAVs-~~~~I~IwDl~-t~~~l~tL~t~p~~~~~p~~~~~~~ 188 (828)
+++++|||..-++...+. +.+.|.++.++ .++||.+ -+.-|+|||+. ..-++++|.+|+..... +
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs-------v 553 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS-------V 553 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE-------E
Confidence 889999999888887776 47899999997 4678875 46689999997 45677888887531110 1
Q ss_pred ccceeeec---cceEEEeCCCcee------cCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccc
Q 003336 189 GYGPLAVG---PRWLAYSGSPVVV------SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 259 (828)
Q Consensus 189 ~~~piAlg---~r~LAya~~~~~~------s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~ 259 (828)
+ ||-+ -+.|....++.+. ...|++.|.+- .++ +| ..|-|+.
T Consensus 554 K---Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t-------------~t~-------~k------tTlYDm~- 603 (1080)
T KOG1408|consen 554 K---FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT-------------QTL-------SK------TTLYDMA- 603 (1080)
T ss_pred E---EeecCCceEEEeccCchhhheehhccccCceeccccc-------------ccc-------cc------ceEEEee-
Confidence 1 1111 1223322222110 11222211110 000 00 0011110
Q ss_pred eeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCCCCEE
Q 003336 260 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSGILL 336 (828)
Q Consensus 260 ~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~---aH~~pIsaLaFSPdG~lL 336 (828)
.-|.+ ++.+++..|..|+|||+.+++.++.|+ .|.+..-.|..+|+|-||
T Consensus 604 --------------------Vdp~~-------k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 604 --------------------VDPTS-------KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred --------------------eCCCc-------ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE
Confidence 11112 245677899999999999999999998 466778889999999999
Q ss_pred EEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 337 ATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
||...|.+ +-+||...+ +++.+. -||.. .|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus 657 atScsdkt-l~~~Df~sg--------------EcvA~m-~GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 657 ATSCSDKT-LCFVDFVSG--------------ECVAQM-TGHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeecCCc-eEEEEeccc--------------hhhhhh-cCcch-heeeeeecccchhheeecCCceEEEEECch
Confidence 99999988 899999876 444444 25543 399999999999999999999999999965
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=119.26 Aligned_cols=242 Identities=16% Similarity=0.170 Sum_probs=159.3
Q ss_pred CCcEEEEEccC-CeEEEEecC--CCc--eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccc
Q 003336 17 TRRVLLLGYRS-GFQVWDVEE--ADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (828)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~--~~~--~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~ 91 (828)
-..+|+.|... .+++.-.+. .+. -.--++-|||.||.++|+-.|.. ...+|+-.+.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s----------~~~il~s~ga--------- 160 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES----------GGAILASAGA--------- 160 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc----------CceEEEecCC---------
Confidence 35677777654 366654432 111 12234678999999999976532 1123432221
Q ss_pred cCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEE-EcCCEEEE-EeCCEEEEEECCCCceE
Q 003336 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVR-CSSRVVAI-CQAAQVHCFDAATLEIE 168 (828)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~-~S~riLAV-s~~~~I~IwDl~t~~~l 168 (828)
-++.|.+-|-.+|+..+.+.- ...|.++- +++-++|. +++.+|++||++-..++
T Consensus 161 -----------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 161 -----------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred -----------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecccee
Confidence 128899999999999999875 55777754 46777776 67889999999988787
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
.++.+.- .+. | +.. +-|+.+|.+-+
T Consensus 218 ~~l~~~~-----~~~-g--les-------------------------------------------savaav~vdps---- 242 (350)
T KOG0641|consen 218 NTLDNDF-----HDG-G--LES-------------------------------------------SAVAAVAVDPS---- 242 (350)
T ss_pred eeccCcc-----cCC-C--ccc-------------------------------------------ceeEEEEECCC----
Confidence 7775421 000 0 000 11111111110
Q ss_pred ceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003336 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLa 328 (828)
| ..++++..|....+||++.++++..|..|+..|.|+.
T Consensus 243 ---------------------------------------g---rll~sg~~dssc~lydirg~r~iq~f~phsadir~vr 280 (350)
T KOG0641|consen 243 ---------------------------------------G---RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR 280 (350)
T ss_pred ---------------------------------------c---ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE
Confidence 0 0123445667789999999999999999999999999
Q ss_pred EcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 329 FSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|||...+|.|+|.|-. |++=|+.-.. .+.|-.+--+....++..+-|.|..--+.+.|.|.|+.+|.
T Consensus 281 fsp~a~yllt~syd~~-ikltdlqgdl------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMK-IKLTDLQGDL------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eCCCceEEEEecccce-EEEeecccch------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 9999999999999976 9999986430 01111111122223455689999988899999999999999
Q ss_pred cC
Q 003336 409 IN 410 (828)
Q Consensus 409 l~ 410 (828)
++
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 85
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=8.5e-11 Score=135.76 Aligned_cols=236 Identities=14% Similarity=0.188 Sum_probs=152.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
..|+||+.+|++|++++... -+.+..|- .+.+++ .-.+++.+||+.....+-++..|.. ..-++
T Consensus 394 ~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg------------aIWsi 460 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG------------AIWSI 460 (888)
T ss_pred CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc------------ceeee
Confidence 56999999999999999876 44555552 455555 4567999999998887777766532 12245
Q ss_pred eecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccc--c
Q 003336 194 AVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE--F 269 (828)
Q Consensus 194 Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~--~ 269 (828)
+++| +.++.+ +.+.+|.-|....-.. ..| ...+.|+=.-.. .
T Consensus 461 ~~~pD~~g~vT~---------------------------saDktVkfWdf~l~~~-~~g------t~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 461 SLSPDNKGFVTG---------------------------SADKTVKFWDFKLVVS-VPG------TQKKVLSLKHTRTLE 506 (888)
T ss_pred eecCCCCceEEe---------------------------cCCcEEEEEeEEEEec-cCc------ccceeeeeccceEEe
Confidence 5544 222221 1223333333211110 000 000000000000 0
Q ss_pred cCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEE
Q 003336 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 349 (828)
Q Consensus 270 ~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IW 349 (828)
+++.--. ..++|+.+ .++.+--+.+|+||-+++.+..-.+-+|.-||.||..|||+++++|||.|.+ |+||
T Consensus 507 l~ddvL~-v~~Spdgk-------~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiW 577 (888)
T KOG0306|consen 507 LEDDVLC-VSVSPDGK-------LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIW 577 (888)
T ss_pred ccccEEE-EEEcCCCc-------EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEe
Confidence 1111000 11233322 1233445789999999999998899999999999999999999999999987 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 350 di~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
-+.-| .+++ .|. +|.. .|.++.|-|+...+.+++.|+.|+-||-..+.....+.+|...
T Consensus 578 GLdFG------------DCHK--S~f-AHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 578 GLDFG------------DCHK--SFF-AHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred ccccc------------hhhh--hhh-cccC-ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 88776 2222 232 2322 3999999999999999999999999999999999999998754
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.37 E-value=2.3e-12 Score=133.21 Aligned_cols=220 Identities=15% Similarity=0.202 Sum_probs=146.3
Q ss_pred CcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCc-eEEEEEcCCCccCCCCCCCCCc
Q 003336 113 SSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLE-IEYAILTNPIVMGHPSAGGIGI 188 (828)
Q Consensus 113 ~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~-~l~tL~t~p~~~~~p~~~~~~~ 188 (828)
+..+=+-++||.-||..++++.++.-|.+++|+ .++|..+.++-++|||+...+ ....+..|+. ++
T Consensus 77 aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg----------~I 146 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG----------GI 146 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC----------cc
Confidence 345678899999999999999999999999997 345555778889999998765 2233333321 01
Q ss_pred ccceeeeccceEEEeC-CCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccc
Q 003336 189 GYGPLAVGPRWLAYSG-SPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (828)
Q Consensus 189 ~~~piAlg~r~LAya~-~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~ 267 (828)
|-+-++. ++.+.+ +++.++|.-|...+.+.+- +|.
T Consensus 147 ---------r~v~wc~eD~~iLS-------------------Sadd~tVRLWD~rTgt~v~------------sL~---- 182 (334)
T KOG0278|consen 147 ---------RTVLWCHEDKCILS-------------------SADDKTVRLWDHRTGTEVQ------------SLE---- 182 (334)
T ss_pred ---------eeEEEeccCceEEe-------------------eccCCceEEEEeccCcEEE------------EEe----
Confidence 1222221 111111 1244555444433333221 110
Q ss_pred cccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 268 ~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
++....+... + ..|.+++....+.|..||..+...++.++.. ..|.+.+++|+-..++.|+.|+. ++
T Consensus 183 --~~s~VtSlEv-s--------~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~~ 249 (334)
T KOG0278|consen 183 --FNSPVTSLEV-S--------QDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-VY 249 (334)
T ss_pred --cCCCCcceee-c--------cCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-EE
Confidence 0100001000 0 1234455567789999999999999988754 35889999999999999999997 78
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.||..++ +.+-.+..|+. ..|.++.|||||...|+||.||||+||...+..-
T Consensus 250 kfDy~Tg--------------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 250 KFDYNTG--------------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEeccCC--------------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999887 22222345664 4699999999999999999999999999987533
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=7.2e-11 Score=138.98 Aligned_cols=176 Identities=17% Similarity=0.277 Sum_probs=127.5
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL-~f~s~V~sV~~S--~riLAVs-~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|..|...+++.-.-| +|.-++..++++ +..+|.+ .|..|+|-+..+....+.+..|..+.
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV-------------- 141 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV-------------- 141 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce--------------
Confidence 78999988877654322 455666667775 6677775 45579999999988888887763211
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
.+ |.|.+ .+..
T Consensus 142 l~-----l~~~p---------------------------~~~f------------------------------------- 152 (933)
T KOG1274|consen 142 LQ-----LSYDP---------------------------KGNF------------------------------------- 152 (933)
T ss_pred ee-----eeEcC---------------------------CCCE-------------------------------------
Confidence 11 22221 0111
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc-------C-CCCeEEEEEcCCCCEEEEEecCCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-------H-KSPISALCFDPSGILLVTASVQGH 344 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a-------H-~~pIsaLaFSPdG~lLATaS~DGt 344 (828)
++....+|.|+|||+.++.+..++.. - ...+..++|+|+|..||..+.|+.
T Consensus 153 ---------------------LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 153 ---------------------LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred ---------------------EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 12234689999999999876665542 1 345678999999777777778877
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 345 ~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|++|+.... .++++|+-.+....+.+++|||+|+|||+++.||-|-|||..+
T Consensus 212 -Vkvy~r~~w--------------e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 -VKVYSRKGW--------------ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -EEEEccCCc--------------eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 899998875 5778886666555699999999999999999999999999984
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.36 E-value=7e-11 Score=141.31 Aligned_cols=239 Identities=18% Similarity=0.249 Sum_probs=162.9
Q ss_pred CCCcEEEEEccCC-eEEEEecC------CCc-----------eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEE
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEE------ADN-----------VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL 77 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~------~~~-----------~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLL 77 (828)
+..+.|+.|.++. ++||.-.. .+. +..++..|++-|..+.+.|+. -+|
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--------------~~l 144 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--------------SLL 144 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--------------cEE
Confidence 3478999999888 69999883 111 344555678888888887742 145
Q ss_pred EEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-Ee
Q 003336 78 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQ 153 (828)
Q Consensus 78 avv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~ 153 (828)
|.|+- +++|.+||.+|.+.++.|+- .+.|..|.|. ++++|+ +.
T Consensus 145 vS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 145 VSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD 191 (942)
T ss_pred EEecc---------------------------------cceEEEEccccceeeeeeecccccccceEECCccCeeeeecC
Confidence 54442 27899999999999999975 6799999997 899999 67
Q ss_pred CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCC
Q 003336 154 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 233 (828)
Q Consensus 154 ~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g 233 (828)
|++|.||+..+....+++...-.. +|. + .+- +-|.++ | +|
T Consensus 192 Drtikvwrt~dw~i~k~It~pf~~--~~~-------~-T~f---~RlSWS-------------P--------------DG 231 (942)
T KOG0973|consen 192 DRTLKVWRTSDWGIEKSITKPFEE--SPL-------T-TFF---LRLSWS-------------P--------------DG 231 (942)
T ss_pred CceEEEEEcccceeeEeeccchhh--CCC-------c-cee---eecccC-------------C--------------Cc
Confidence 889999998887777776442110 110 0 000 000000 1 12
Q ss_pred cceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE
Q 003336 234 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV 313 (828)
Q Consensus 234 ~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~ 313 (828)
..+ + +++. --+..-.+.|.+-.+-+.
T Consensus 232 ~~l-----------a------------------------------s~nA-------------~n~~~~~~~IieR~tWk~ 257 (942)
T KOG0973|consen 232 HHL-----------A------------------------------SPNA-------------VNGGKSTIAIIERGTWKV 257 (942)
T ss_pred Cee-----------c------------------------------chhh-------------ccCCcceeEEEecCCcee
Confidence 111 0 0000 001123677777777777
Q ss_pred EEEeccCCCCeEEEEEcCC-----CC------------EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 314 IAQFRAHKSPISALCFDPS-----GI------------LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 314 i~~f~aH~~pIsaLaFSPd-----G~------------lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
-..|-+|..|+.+++|+|. -+ .+|+||.|++ |-||..... +.++..+
T Consensus 258 ~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~--------------RPl~vi~- 321 (942)
T KOG0973|consen 258 DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP--------------RPLFVIH- 321 (942)
T ss_pred eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCCC--------------Cchhhhh-
Confidence 7889999999999999983 11 5889999998 899987543 2333322
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
......|.|++|||||.-|.++|.||||.++.++.
T Consensus 322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 12334599999999999999999999999999875
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.4e-10 Score=121.77 Aligned_cols=229 Identities=14% Similarity=0.274 Sum_probs=152.1
Q ss_pred CcEEEEEc--cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGY--RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy--~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..|+.... ++.++..++.+ +...+.+..|...|..+.+.|. +|.| .+.+
T Consensus 69 ~~~i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~-------~d~F---------lS~S------------ 119 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPK-------DDTF---------LSSS------------ 119 (311)
T ss_pred ceEEEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCC-------CCeE---------Eecc------------
Confidence 34444443 45789999987 5677888889999999999883 2444 2211
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC-CEEEEEEcCCEEEEEeCC-EEEEEECCCCce-EEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAICQAA-QVHCFDAATLEI-EYAIL 172 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S~riLAVs~~~-~I~IwDl~t~~~-l~tL~ 172 (828)
.+++||+||+++.++..-+.... +|.+..-.+-++|++..+ .|.+||++.+.. .++..
T Consensus 120 -------------------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 120 -------------------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred -------------------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 23899999999999999888754 666655567888887665 999999997631 22111
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
... .+.. .+|=.- .|+ .+|+.+
T Consensus 181 ~i~--------------~~~~---~ew~~l----------------------~FS---~dGK~i---------------- 202 (311)
T KOG1446|consen 181 SIT--------------DNDE---AEWTDL----------------------EFS---PDGKSI---------------- 202 (311)
T ss_pred ccC--------------CCCc---cceeee----------------------EEc---CCCCEE----------------
Confidence 100 0000 011000 000 122221
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCe---EEEEE
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI---SALCF 329 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pI---saLaF 329 (828)
.-....+.+.|.|.-+|..+.+|..|...- ...+|
T Consensus 203 ------------------------------------------LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 203 ------------------------------------------LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred ------------------------------------------EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 112345688999999999999999876432 45689
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
+|||+.+.+++.||+ |+||++.++ .++..+ +|.....+.++-|+|.-..+|++ +..+-+|-.
T Consensus 241 tPds~Fvl~gs~dg~-i~vw~~~tg--------------~~v~~~-~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGT-IHVWNLETG--------------KKVAVL-RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred CCCCcEEEEecCCCc-EEEEEcCCC--------------cEeeEe-cCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 999999999999999 899999886 444555 45444568889999976555554 556777876
Q ss_pred CCC
Q 003336 410 NPL 412 (828)
Q Consensus 410 ~~~ 412 (828)
...
T Consensus 303 ~~~ 305 (311)
T KOG1446|consen 303 DED 305 (311)
T ss_pred ccc
Confidence 543
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.35 E-value=1.2e-11 Score=137.16 Aligned_cols=263 Identities=16% Similarity=0.230 Sum_probs=163.8
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeee-----eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVS-----RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS-----~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~ 90 (828)
+.++|+..| .++++|||+...++-. -++ .++.-+|.++++|++. -|| +++.
T Consensus 430 ~trhVyTgG-kgcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgr-------------tLi--vGGe------- 485 (705)
T KOG0639|consen 430 PTRHVYTGG-KGCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGR-------------TLI--VGGE------- 485 (705)
T ss_pred CcceeEecC-CCeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCc-------------eEE--eccc-------
Confidence 347777776 5889999998654321 111 2566778888887542 233 3321
Q ss_pred ccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC---CEEEEEEc--CCE-EEEEeCCEEEEEECCC
Q 003336 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SRV-VAICQAAQVHCFDAAT 164 (828)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s---~V~sV~~S--~ri-LAVs~~~~I~IwDl~t 164 (828)
-.+|.||||.+....-..+.++ ..|+++++ .++ ++.+.++.|.|||+.+
T Consensus 486 -------------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 486 -------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred -------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 1679999998876654445544 56888887 333 4557899999999999
Q ss_pred CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003336 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (828)
Q Consensus 165 ~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ss 244 (828)
...++++.+|++- ...|.++ .+-...|..| -+.+|..|.....
T Consensus 541 q~~VrqfqGhtDG------------ascIdis-------~dGtklWTGG------------------lDntvRcWDlreg 583 (705)
T KOG0639|consen 541 QTLVRQFQGHTDG------------ASCIDIS-------KDGTKLWTGG------------------LDNTVRCWDLREG 583 (705)
T ss_pred ceeeecccCCCCC------------ceeEEec-------CCCceeecCC------------------Cccceeehhhhhh
Confidence 9999999988641 1123322 1111222211 1234444443333
Q ss_pred cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCe
Q 003336 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI 324 (828)
Q Consensus 245 k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pI 324 (828)
+++.. ..++.....+ + +....+| ++-+-..+.|-|.... +....++.-|.+-|
T Consensus 584 rqlqq----------hdF~SQIfSL---g----~cP~~dW---------lavGMens~vevlh~s-kp~kyqlhlheScV 636 (705)
T KOG0639|consen 584 RQLQQ----------HDFSSQIFSL---G----YCPTGDW---------LAVGMENSNVEVLHTS-KPEKYQLHLHESCV 636 (705)
T ss_pred hhhhh----------hhhhhhheec---c----cCCCccc---------eeeecccCcEEEEecC-CccceeecccccEE
Confidence 33321 0000000000 0 0011122 1223445666666543 34446677899999
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
.+|+|.+-|+++++.+.|.- ++.|.+.-+ ..++.... ...|.++.+|-|.+||++||.|...
T Consensus 637 LSlKFa~cGkwfvStGkDnl-LnawrtPyG--------------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNL-LNAWRTPYG--------------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred EEEEecccCceeeecCchhh-hhhccCccc--------------cceeeccc---cCcceeeeeccCceEEEecCCCcce
Confidence 99999999999999999964 899987654 34555543 2359999999999999999999999
Q ss_pred EEEec
Q 003336 405 HLFAI 409 (828)
Q Consensus 405 hIwdl 409 (828)
.||.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 99876
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.34 E-value=4.5e-11 Score=126.11 Aligned_cols=112 Identities=16% Similarity=0.238 Sum_probs=83.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ- 375 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~- 375 (828)
..+-.|++.|+.+|..-.++.+|...|.++.|+|... .|||||.||+ ||+||++.. .+.-..-+. ...+..-.++
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-sgcf~~lD~-hn~k~~p~~~~ 241 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-SGCFRVLDQ-HNTKRPPILKT 241 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-cceeEEeec-ccCccCccccc
Confidence 3456899999999999999999999999999999776 6899999998 899999874 111000000 0001111111
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+-....+|..+||+.|+.++++.+.|..+++|....+
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 2222345999999999999999999999999999764
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.9e-12 Score=148.70 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=126.2
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|+||||..++.+++|-. ...+.+|.|+ ..+.|. +.+..+.+||++..-|.++...|+- .+
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~------------vv-- 157 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR------------VV-- 157 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc------------ee--
Confidence 8999999999999999864 6799999998 456665 6788899999998888888776531 11
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+.|++.. +|..+
T Consensus 158 -----~~l~lsP---------------------------~Gr~v------------------------------------ 169 (825)
T KOG0267|consen 158 -----DVLRLSP---------------------------DGRWV------------------------------------ 169 (825)
T ss_pred -----EEEeecC---------------------------CCcee------------------------------------
Confidence 2233321 12111
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
++++.|..|+|||+..|+.+..|+.|...|.+|.|+|.--+|++||.|++ +++||++
T Consensus 170 ----------------------~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dle 226 (825)
T KOG0267|consen 170 ----------------------ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLE 226 (825)
T ss_pred ----------------------eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccc
Confidence 22345789999999999999999999999999999999999999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
+. ..+-.. +.....|.+.+|+||++.+++|...
T Consensus 227 tf--------------e~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 TF--------------EVISSG--KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ee--------------EEeecc--CCccCCceeeeecCCceeeecCchh
Confidence 74 222222 1113459999999999999887654
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=4.3e-11 Score=132.26 Aligned_cols=213 Identities=20% Similarity=0.323 Sum_probs=150.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+-++..|.++-|+|||+++. +....+..|.+.|..+.|--.+ ..|.. ++
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt-------------~~lys-~s---------------- 263 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGT-------------SELYS-AS---------------- 263 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeecCc-------------cceee-ee----------------
Confidence 44445556677999999984 5666788899999999885321 01222 11
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL-~f~s~V~sV~~S--~riLAVs-~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+.+|++|++..-.++.++ .+.+.|.+|... .+.+.|. -|.++++|++..-..+ ....
T Consensus 264 -----------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg 325 (479)
T KOG0299|consen 264 -----------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRG 325 (479)
T ss_pred -----------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeC
Confidence 2278999999999988876 467899999985 5666674 7899999998422111 1111
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
+. ++ ...+||-
T Consensus 326 ~~---~s----------------idcv~~I-------------------------------------------------- 336 (479)
T KOG0299|consen 326 GE---GS----------------IDCVAFI-------------------------------------------------- 336 (479)
T ss_pred CC---CC----------------eeeEEEe--------------------------------------------------
Confidence 10 00 0001111
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCC---C-------
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHK---S------- 322 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~---~------- 322 (828)
. ..||++++.+|.|.+|++.+++++.+.+ ||. .
T Consensus 337 -n-----------------------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 337 -N-----------------------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred -c-----------------------------------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 0 1267788899999999999999998876 663 2
Q ss_pred -CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 323 -PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 323 -pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
-|++|+.-|...+||+||.+|. +|+|.+.++. .....++.+. . ...|++|+|+++|++|.+|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~----------r~i~~l~~ls--~-~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL----------RAINLLYSLS--L-VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cceeeeEecccCceEEecCCCCc-eEEEEecCCc----------cccceeeecc--c-ccEEEEEEEccCCCEEEEe
Confidence 6899999999999999999998 8999998761 1234556553 2 2359999999999988877
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.7e-10 Score=122.85 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=66.5
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC----------CCCC---------------cc----
Q 003336 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL----------GTSS---------------AC---- 362 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~----------~~~~---------------~~---- 362 (828)
+.+..+++|.+.|.++||||+.+.++|+|.||+ +||||+.-.+. ++.. .+
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA 347 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA 347 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE
Confidence 345678899999999999999999999999998 89999865321 1000 00
Q ss_pred CCCCceeEEEEEecCCc--------cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 363 DAGTSYVHLYRLQRGLT--------NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 363 ~~~~~~~~l~~L~RG~t--------~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
-..++-.++|.-++|.. ...|.+|+|++||+++|+++ |+-++|+.-.+
T Consensus 348 ~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 348 VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 00122234444444422 22489999999999998876 44677766433
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=2.5e-11 Score=141.94 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=91.7
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
+.+.+++-|.+|+||++....+++.|. |..-|+||+|+| |-+++++||-||. ||||+|... .+..
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~------------~Vv~ 446 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK------------KVVD 446 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC------------eeEe
Confidence 455678899999999999999999995 999999999999 8999999999998 899999764 2333
Q ss_pred EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
-+.++ .-|+.+||+|||++.++|+-+|.+++|+.....-...++.
T Consensus 447 W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 447 WNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 33442 2389999999999999999999999999976544444443
No 109
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.4e-12 Score=146.88 Aligned_cols=320 Identities=25% Similarity=0.367 Sum_probs=191.4
Q ss_pred CCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
...+++.||=.| .++|-....+.+.+++..+.|+|+...++++. +.++.+
T Consensus 251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~----------------~vivkd------------- 301 (788)
T KOG2109|consen 251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN----------------LVIVKD------------- 301 (788)
T ss_pred chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc----------------eEEeec-------------
Confidence 355666777666 78898888888888888899999988877642 122221
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
|-+..+...++..+++..+.+++-++-+|++++-..+.|++++.++.+-++....
T Consensus 302 -------------------------f~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~ 356 (788)
T KOG2109|consen 302 -------------------------FDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSD 356 (788)
T ss_pred -------------------------ccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccc
Confidence 1123334445555555555555556667776666666666666666554443321
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCce---e---cCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVV---V---SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~---~---s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
++ +..+++++.++||+|..-... . +..|. +..+.+. -.+--|| .+-|-.
T Consensus 357 ---qs-------~~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge--~P~ls~t----------~~lp~~A---~~Sl~~ 411 (788)
T KOG2109|consen 357 ---QS-------LVVSPRANTAAVIQDICFSEVSTIRTAGSCEGE--PPALSLT----------CQLPAYA---DTSLDL 411 (788)
T ss_pred ---cc-------cccchhcchHHHHHHHhhhhhcceEeecccCCC--Ccccccc----------cccchhh---chhhhc
Confidence 11 123456666666665431110 0 00110 0001000 0000011 111111
Q ss_pred eeEeccCccceee----ccccccccCCCCCCc--ccccCCCCCCCccCCcccccCCCCeEEEEECC-----CC-cEEEEe
Q 003336 250 GIVNLGDLGYKKL----SQYCSEFLPDSQNSL--QSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-----SK-NVIAQF 317 (828)
Q Consensus 250 Gl~~lGd~g~~~l----s~y~~~~~p~~~~si--~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~-----s~-~~i~~f 317 (828)
|+...|......+ ..||....- ..+. .+..++.|.+|...+..+. ...|.+.+.+.. ++ -.++++
T Consensus 412 gl~s~g~~aa~gla~~sag~~a~s~~--asSv~s~s~~pd~ks~gv~~gsv~k-~~q~~~~~l~~llv~~psGd~vvqh~ 488 (788)
T KOG2109|consen 412 GLQSSGGLAAEGLATSSAGYTAHSYT--ASSVFSRSVKPDSKSVGVGSGSVTK-ANQGVITVLNLLLVGEPSGDGVVQHY 488 (788)
T ss_pred cccccCcccceeeeeccccccccccc--cceeeccccccchhhccceeeeccc-cCccchhhhhheeeecCCCCceeEEE
Confidence 2222222211111 122222110 0111 1223444444443333222 223555554432 34 567888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEE
Q 003336 318 RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 318 ~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 397 (828)
-+|..++..+.|+|+++++.+++..++.+++|.+++...+++-+ .+.|+|+++||.|.++|..++|+-|++|+|.
T Consensus 489 vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wssla-----av~hly~l~rG~TsaKv~~~afs~dsrw~A~ 563 (788)
T KOG2109|consen 489 VAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLA-----AVQHLYKLNRGSTSAKVVSTAFSEDSRWLAI 563 (788)
T ss_pred eeccCccceeeecccccceecccccccccceEEeecccccHHHh-----hhhhhhhccCCCccceeeeeEeecchhhhhh
Confidence 89999999999999999999999999988999999874444332 4679999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCCCceeeccCCC
Q 003336 398 SSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 398 ~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
....+|.|||.+++|++....++|++
T Consensus 564 ~t~~~TthVfk~hpYgg~aeqrth~~ 589 (788)
T KOG2109|consen 564 TTNHATTHVFKVHPYGGKAEQRTHGD 589 (788)
T ss_pred hhcCCceeeeeeccccccccceecCC
Confidence 99999999999999999999999987
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.28 E-value=1.5e-10 Score=133.09 Aligned_cols=215 Identities=14% Similarity=0.208 Sum_probs=155.1
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
+++..|-+..+-||.... .+..-++.+|...|.++.+.-. +. +++++
T Consensus 73 ~l~~g~~D~~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~---------------~~--~iSgS--------------- 119 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGED---------------GT--LISGS--------------- 119 (745)
T ss_pred ceEeecccceEEEEecCC-CCchhhhhccccceeeeecCCc---------------Cc--eEecc---------------
Confidence 455555566667888775 3455667778888887765421 11 34443
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
|++|+++|-. ++++.+++ +.+.|++|.+- ..+|..+.|++|++|.. +++++++.+|.
T Consensus 120 ----------------WD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHt 179 (745)
T KOG0301|consen 120 ----------------WDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHT 179 (745)
T ss_pred ----------------cccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccch
Confidence 4589999975 56666665 57799998883 45566688999999987 55677777764
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
++. |-||.-
T Consensus 180 D~V-------------------RgL~vl---------------------------------------------------- 188 (745)
T KOG0301|consen 180 DCV-------------------RGLAVL---------------------------------------------------- 188 (745)
T ss_pred hhe-------------------eeeEEe----------------------------------------------------
Confidence 311 111111
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCE
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL 335 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~l 335 (828)
+ .++|++.++||.|++||+ ++.++..+.+|+.-|.+++..+++.+
T Consensus 189 ---------------~-------------------~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 189 ---------------D-------------------DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred ---------------c-------------------CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 0 014567789999999999 78999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 336 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 336 LATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
++|++.|++ ++||+... +....++. ...||++++=++|. |++|++||.|+||-..+.
T Consensus 234 Ivs~gEDrt-lriW~~~e--------------~~q~I~lP----ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 234 IVSTGEDRT-LRIWKKDE--------------CVQVITLP----TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEecCCce-EEEeecCc--------------eEEEEecC----ccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999999998 89999763 23333431 22499999988886 558889999999998753
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=2.3e-10 Score=126.21 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=78.7
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 296 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.+..+|.|+-+|+++. +++.+++||..+|++|++++. -.+|+|+|.|+. +++|++....+. .-+.|-+.
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~--------~v~~~~~~ 417 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPK--------SVKEHSFK 417 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCc--------cccccccc
Confidence 4568899999999975 899999999999999999986 458999999987 899998754111 01223333
Q ss_pred EecCCccccEEEEEEccCC-CEEEEEeCCCcEEEEecCCCC
Q 003336 374 LQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg-~~LAs~S~DGTVhIwdl~~~g 413 (828)
+-| ..|.++.|+- -++|.|+..+.++|||+.++.
T Consensus 418 ~~r------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 418 LGR------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccc------eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 322 5677777754 467888888999999998753
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=128.28 Aligned_cols=107 Identities=21% Similarity=0.420 Sum_probs=87.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~--pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+++++|+.-..|+.++..+......++ .+++++|+|||.+|+|+..||. ++|||+... ..+.
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-vkiwdlks~--------------~~~a 383 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-VKIWDLKSQ--------------TNVA 383 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-EEEEEcCCc--------------cccc
Confidence 4567788999999999988777664332 5899999999999999999996 899999875 1234
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
+| .||+ +.|..|+||-+|.|||++++|+.|++||+.......++
T Consensus 384 ~F-pght-~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 384 KF-PGHT-GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred cC-CCCC-CceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 55 3554 57999999999999999999999999999886544444
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.26 E-value=1.8e-10 Score=132.04 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=95.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC---CCCEEEEEecCCCEEEEEeCCCCCC------C-CCCc-
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SGILLVTASVQGHNINIFKIIPGIL------G-TSSA- 361 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP---dG~lLATaS~DGt~I~IWdi~~~~~------~-~~~~- 361 (828)
++++++.-|.++|||+.+.+....+.||.+.|.||.||- .-+|||+||.| +.|+|||+...+. + +++-
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd-RlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD-RLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCC-ceEEEEecccccchhhhhccccccee
Confidence 678888899999999999999999999999999999985 35699999998 5699999876521 1 1110
Q ss_pred ------cCC--------------------CCceeEEEEEecCCcc---ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 362 ------CDA--------------------GTSYVHLYRLQRGLTN---AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 362 ------~~~--------------------~~~~~~l~~L~RG~t~---a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+. .+..+ .|.|++.. ..+++++.-|..+++++++.|+.|+||++..+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~---~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGR---LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCce---eccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 000 00111 12233221 23899999999999999999999999999998
Q ss_pred CCceeeccCC
Q 003336 413 GGSVNFQPTD 422 (828)
Q Consensus 413 gg~~~~~~H~ 422 (828)
+....|++..
T Consensus 629 Kq~k~FKgs~ 638 (1080)
T KOG1408|consen 629 KQVKSFKGSR 638 (1080)
T ss_pred ceeeeecccc
Confidence 8888887643
No 114
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.3e-11 Score=146.00 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=163.4
Q ss_pred cEEEEEccCC-eEEEEecC--CCceeEee---eeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 19 RVLLLGYRSG-FQVWDVEE--ADNVHDLV---SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 19 ~vLl~Gy~~G-~qVWdv~~--~~~~~ell---S~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
-||+.|.++| +-+||.+. .++..+++ +.|.|+|+.+.|-+. ...+||-+++
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-------------q~nlLASGa~---------- 137 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-------------QGNLLASGAD---------- 137 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-------------CCceeeccCC----------
Confidence 5889999888 99999987 35555555 468999999988652 2346652221
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEE---eCCCCEEEEEEc---CCEEEEE-eCCEEEEEECCCC
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML---KFRSPIYSVRCS---SRVVAIC-QAAQVHCFDAATL 165 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL---~f~s~V~sV~~S---~riLAVs-~~~~I~IwDl~t~ 165 (828)
.+.|.||||..-+.-.++ .+.+.|..|++| .++||.+ ..+++.|||++.-
T Consensus 138 -----------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 138 -----------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred -----------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 267999999875544443 357789999998 4678875 4569999999987
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.+-.+..++.- +.+ .-|++. |.+.
T Consensus 195 ~pii~ls~~~~~---------------~~~--S~l~Wh-------------P~~a------------------------- 219 (1049)
T KOG0307|consen 195 KPIIKLSDTPGR---------------MHC--SVLAWH-------------PDHA------------------------- 219 (1049)
T ss_pred CcccccccCCCc---------------cce--eeeeeC-------------CCCc-------------------------
Confidence 665555443211 000 012222 1100
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCe
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPI 324 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~~~i~~f~aH~~pI 324 (828)
+.+..++. .+..-.|.+||++. -.+++.++.|...|
T Consensus 220 -----------------------------Tql~~As~--------------dd~~PviqlWDlR~assP~k~~~~H~~Gi 256 (1049)
T KOG0307|consen 220 -----------------------------TQLLVASG--------------DDSAPVIQLWDLRFASSPLKILEGHQRGI 256 (1049)
T ss_pred -----------------------------eeeeeecC--------------CCCCceeEeecccccCCchhhhcccccce
Confidence 00000100 12234799999885 46888899999999
Q ss_pred EEEEEcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC-CCEEEEEeCCC
Q 003336 325 SALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRG 402 (828)
Q Consensus 325 saLaFSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DG 402 (828)
.+|.|.+.+ ++|+|++.|++ |.+|+..++ +.++.|-++ ...+.++.|+|- -..+|++|-||
T Consensus 257 lslsWc~~D~~lllSsgkD~~-ii~wN~~tg--------------Evl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNR-IICWNPNTG--------------EVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred eeeccCCCCchhhhcccCCCC-eeEecCCCc--------------eEeeecCCC--CcceeeeeecCCCcchhhhheecc
Confidence 999999966 89999999998 789999886 677888553 345999999995 45899999999
Q ss_pred cEEEEecCCC
Q 003336 403 TSHLFAINPL 412 (828)
Q Consensus 403 TVhIwdl~~~ 412 (828)
+|-||.+...
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999999764
No 115
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=2.5e-10 Score=133.70 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=121.3
Q ss_pred CCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CC-EEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCC
Q 003336 112 GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 187 (828)
Q Consensus 112 ~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~r-iLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~ 187 (828)
..+.+.|||||++...+|++++.++.-|.+|+|+ .+ +|..++|++|+||++..-+....-.....
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l----------- 453 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL----------- 453 (712)
T ss_pred eccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh-----------
Confidence 4567899999999999999999999999999997 34 44558999999999987664333221100
Q ss_pred cccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccc
Q 003336 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (828)
Q Consensus 188 ~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~ 267 (828)
+ -| +.|.
T Consensus 454 --I--TA-----vcy~---------------------------------------------------------------- 460 (712)
T KOG0283|consen 454 --I--TA-----VCYS---------------------------------------------------------------- 460 (712)
T ss_pred --h--ee-----EEec----------------------------------------------------------------
Confidence 0 01 1222
Q ss_pred cccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---------cCCCCeEEEEEcCCCC--EE
Q 003336 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---------AHKSPISALCFDPSGI--LL 336 (828)
Q Consensus 268 ~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~---------aH~~pIsaLaFSPdG~--lL 336 (828)
|+|.++ +-|...|.+++|+....+.+..+. .|. .|+.+.|.|.-. +|
T Consensus 461 ---PdGk~a------------------vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 461 ---PDGKGA------------------VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVL 518 (712)
T ss_pred ---cCCceE------------------EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEE
Confidence 111111 113346788888887766655443 233 799999998433 55
Q ss_pred EEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc-EEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 337 ATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
+| |.|-+ |||||+... .+.+ +| +|..+.. =...+|+.||++|+++|+|.-|.||++....
T Consensus 519 VT-SnDSr-IRI~d~~~~------------~lv~--Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 519 VT-SNDSR-IRIYDGRDK------------DLVH--KF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred Ee-cCCCc-eEEEeccch------------hhhh--hh-cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 55 56766 999999654 1223 33 2332222 3468899999999999999999999997653
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.2e-10 Score=120.68 Aligned_cols=248 Identities=17% Similarity=0.218 Sum_probs=161.3
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+..|++|+.+| +-|||..+.+ ...+++.|--||.++.+.+++. -|| ..+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr-------------~Ll-tsS--------------- 84 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGR-------------KLL-TSS--------------- 84 (405)
T ss_pred cceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCC-------------Eee-eec---------------
Confidence 68899999988 8999999875 7789999999999999987542 133 111
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CC-EEEEEeCCEEEEEECCCCceEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~r-iLAVs~~~~I~IwDl~t~~~l~tL~ 172 (828)
.+..|++||+..|.+++.++|+++|+...+. .+ .+|.-.+..-.+-+.... ++++.
T Consensus 85 ------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~L 144 (405)
T KOG1273|consen 85 ------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVL 144 (405)
T ss_pred ------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeec
Confidence 1267999999999999999999999999995 22 233233333333333321 11111
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
. -.+. | .+..+ .+.+
T Consensus 145 p----------------------------~d~d-------~-----dln~s------as~~------------------- 159 (405)
T KOG1273|consen 145 P----------------------------KDDD-------G-----DLNSS------ASHG------------------- 159 (405)
T ss_pred c----------------------------CCCc-------c-----ccccc------cccc-------------------
Confidence 1 0000 0 00000 0000
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDP 331 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~-~pIsaLaFSP 331 (828)
. ..+ .| ..+.+|...|.+-|+|..+.++++.|+--+ ..|..|-|+.
T Consensus 160 -----~------------------------fdr-~g---~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~ 206 (405)
T KOG1273|consen 160 -----V------------------------FDR-RG---KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR 206 (405)
T ss_pred -----c------------------------ccC-CC---CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec
Confidence 0 000 01 123456678999999999999999999776 8899999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCC-CCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC-CcEEEEec
Q 003336 332 SGILLVTASVQGHNINIFKIIPGI-LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAI 409 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~-~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl 409 (828)
.|+.|++-..|. +||+|++..-. .|. .+.++..+++.--.....-.++|||.||.|++.+|.+ ..+.||.-
T Consensus 207 ~g~~liiNtsDR-vIR~ye~~di~~~~r------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 207 KGRFLIINTSDR-VIRTYEISDIDDEGR------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cCcEEEEecCCc-eEEEEehhhhcccCc------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 999999999995 59999987420 111 1122322333322222234689999999999988865 46899998
Q ss_pred CCCCCceeecc
Q 003336 410 NPLGGSVNFQP 420 (828)
Q Consensus 410 ~~~gg~~~~~~ 420 (828)
+.+.-...+++
T Consensus 280 ~~GsLVKILhG 290 (405)
T KOG1273|consen 280 SIGSLVKILHG 290 (405)
T ss_pred CCcceeeeecC
Confidence 76544444444
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.9e-10 Score=121.16 Aligned_cols=108 Identities=13% Similarity=0.232 Sum_probs=87.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++.+-.|.|||+. |+.+.++......-...+.||+|++||+++..-. ++||.+--+ ..+ .-.++.+.+.
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~---kdG---~fqev~rvf~ 273 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFT---KDG---TFQEVKRVFS 273 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEec---cCc---chhhhhhhhe
Confidence 3567788899999999 8999999887777778899999999999998865 899987432 111 1234566778
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
| .||..+ |..+|||++++.+++.|.||+.+|||++-
T Consensus 274 L-kGH~sa-V~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 274 L-KGHQSA-VLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred e-ccchhh-eeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 8 477654 99999999999999999999999999863
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=8.5e-12 Score=143.43 Aligned_cols=180 Identities=14% Similarity=0.256 Sum_probs=133.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
..+-||..-.-..+..|.. .++|.+|.|+ ..+|+. +.+++|++||+...+.+++|.+|-.. +
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------~ 115 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------I 115 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--------------c
Confidence 5566777666666666654 6799999997 455655 56779999999999988888776321 1
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
.. |+|.. |+.
T Consensus 116 ~s-----v~f~P------------------------------------------------------------~~~----- 125 (825)
T KOG0267|consen 116 TS-----VDFHP------------------------------------------------------------YGE----- 125 (825)
T ss_pred ce-----eeecc------------------------------------------------------------ceE-----
Confidence 11 11110 000
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
-++.+..|+.+.|||++...|+..+++|..-|.++.|+|+|++++.+.+|.+ ++|||+.
T Consensus 126 --------------------~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~ 184 (825)
T KOG0267|consen 126 --------------------FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLT 184 (825)
T ss_pred --------------------EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccc
Confidence 0122345678999999999999999999999999999999999999999866 9999997
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
.+ ..+.+|. ++. ..|+.+.|.|-.-.++.||.|+|+++||+.++.-...
T Consensus 185 ag--------------k~~~ef~-~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 185 AG--------------KLSKEFK-SHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred cc--------------ccccccc-ccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 65 2333442 222 3588999999999999999999999999997643333
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.23 E-value=3.1e-10 Score=130.46 Aligned_cols=207 Identities=16% Similarity=0.240 Sum_probs=138.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCC---EEE-EEE--c--CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSP---IYS-VRC--S--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~---V~s-V~~--S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~ 188 (828)
+++++|+-+.++++.+..|..+ |.. +++ + .++++...|..|.+|...+.+.+++|.+|..-..
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC--------- 105 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC--------- 105 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee---------
Confidence 7899999999998887666332 222 333 2 3455557889999999999999999999864211
Q ss_pred ccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccc
Q 003336 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (828)
Q Consensus 189 ~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~ 268 (828)
+++ -..+... -++|-+.++..|. .|+.+|.
T Consensus 106 -----~ls-----~~~~~~~-------------------iSgSWD~TakvW~-------------~~~l~~~-------- 135 (745)
T KOG0301|consen 106 -----SLS-----IGEDGTL-------------------ISGSWDSTAKVWR-------------IGELVYS-------- 135 (745)
T ss_pred -----eee-----cCCcCce-------------------EecccccceEEec-------------chhhhcc--------
Confidence 110 0000000 0122333332222 2222221
Q ss_pred ccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEE
Q 003336 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (828)
Q Consensus 269 ~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~I 348 (828)
++....++..+... .-.++++++.|.+|++|.- ++.+.+|.+|+.-|..|++=|++. |++|+.||. |+.
T Consensus 136 -l~gH~asVWAv~~l------~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~ 204 (745)
T KOG0301|consen 136 -LQGHTASVWAVASL------PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRL 204 (745)
T ss_pred -cCCcchheeeeeec------CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEE
Confidence 11011111111110 1125788999999999975 788999999999999999988875 789999997 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|++. + ..|++++ ||++ -|++|+..+++..+++++.|+|++||+..
T Consensus 205 w~~~-g--------------e~l~~~~-ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 205 WDLD-G--------------EVLLEMH-GHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred Eecc-C--------------ceeeeee-ccce-EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9994 3 4566664 6664 49999999999999999999999999997
No 120
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.23 E-value=7.2e-11 Score=131.13 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=137.0
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEE-EEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 116 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLA-Vs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
.++|+||||+...+.+.|+ +.+.|..|.+| ..+|| |...+.|.|..+.|...-.++. +++ +
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-~~s--------------g 164 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-IDS--------------G 164 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-cCC--------------C
Confidence 3899999999777666676 46799999997 45666 4677889999988876543332 110 0
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
. +-|.|-|+.++ +.
T Consensus 165 q---svRll~ys~sk--------------------------------------r~------------------------- 178 (673)
T KOG4378|consen 165 Q---SVRLLRYSPSK--------------------------------------RF------------------------- 178 (673)
T ss_pred C---eEEEeeccccc--------------------------------------ce-------------------------
Confidence 0 01555665210 00
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC-CCEEEEEecCCCEEEEE
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS-GILLVTASVQGHNINIF 349 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IW 349 (828)
++..++++|.|.+||+....++..+. +|..|...|||+|. -.+||+-+.|.. |.+|
T Consensus 179 ---------------------lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~y 236 (673)
T KOG4378|consen 179 ---------------------LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIY 236 (673)
T ss_pred ---------------------eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEe
Confidence 12345678999999999988887765 99999999999995 568899999987 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-ccCCCC
Q 003336 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 424 (828)
Q Consensus 350 di~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~-~~H~~~ 424 (828)
|+... ....+| ...+....++|+++|.+|++|++.|.+..||+.....++.+ ..|...
T Consensus 237 D~~s~--------------~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 237 DIRSQ--------------ASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred ecccc--------------ccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 99753 111122 12345889999999999999999999999999988777754 445443
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=4.6e-11 Score=128.89 Aligned_cols=216 Identities=13% Similarity=0.219 Sum_probs=137.8
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S-~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
.++.|+||||.+.+++.+++. .+.|..|.+. ..++.|+.|++|+.|-+.- ..++++.+.....+.- .. -..
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gId-h~---~~~-- 159 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGID-HH---RKN-- 159 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccccccc-cc---ccc--
Confidence 458999999999999999986 4599999996 6778889999999998764 3566665432211110 00 000
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
.-.|.++...-.|..-|..|- .. + .+|+.++.
T Consensus 160 -----~~FaTcGe~i~IWD~~R~~Pv------------------~s------------m----swG~Dti~--------- 191 (433)
T KOG0268|consen 160 -----SVFATCGEQIDIWDEQRDNPV------------------SS------------M----SWGADSIS--------- 191 (433)
T ss_pred -----ccccccCceeeecccccCCcc------------------ce------------e----ecCCCcee---------
Confidence 011122111112211111110 00 0 00111110
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
++ ..+|. -...++++..|+.|.|||+...+++..+.- +..-+.|||+|.+--+++|+.|-. +..||++
T Consensus 192 ---sv-kfNpv------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR 259 (433)
T KOG0268|consen 192 ---SV-KFNPV------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHN-LYTYDMR 259 (433)
T ss_pred ---EE-ecCCC------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccccc-ceehhhh
Confidence 00 01111 012345667899999999999887765432 234467899999989999999954 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.- .+-...++++..| |.+|+|||.|+-+++||-|.||+||.++..
T Consensus 260 ~l--------------~~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 260 NL--------------SRPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred hh--------------cccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 64 2223445788766 999999999999999999999999999875
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=1.6e-09 Score=115.07 Aligned_cols=227 Identities=13% Similarity=0.181 Sum_probs=149.3
Q ss_pred cEE-EEEccCCeEEEEecCCCc-eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 19 RVL-LLGYRSGFQVWDVEEADN-VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 19 ~vL-l~Gy~~G~qVWdv~~~~~-~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+| +...++.+++|+++..+. +.+..-.|+|||-++.+.-++ ..++ .++
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--------------skVf-~g~-------------- 91 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--------------SKVF-SGG-------------- 91 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--------------ceEE-eec--------------
Confidence 444 555678899999987431 222333467787777775321 0111 111
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
.++.+++|||.+++....--+..+|..++|= -..|+. +-|++|+.||.+.-..+.++
T Consensus 92 ------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 92 ------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred ------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 2378999999999877666778899999993 235555 67999999999987777666
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
.- |+ | .|+ ++.-..++
T Consensus 154 ~L-------Pe---------------R--vYa-------------------------------------~Dv~~pm~--- 169 (347)
T KOG0647|consen 154 QL-------PE---------------R--VYA-------------------------------------ADVLYPMA--- 169 (347)
T ss_pred ec-------cc---------------e--eee-------------------------------------hhccCcee---
Confidence 42 11 0 122 11111110
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCC----CeEEE
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS----PISAL 327 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~----pIsaL 327 (828)
+-+..+..|.+|.++++. ..|+.+.+ -+.||
T Consensus 170 -------------------------------------------vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~v 204 (347)
T KOG0647|consen 170 -------------------------------------------VVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCV 204 (347)
T ss_pred -------------------------------------------EEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEE
Confidence 111234568888887643 34444444 47899
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc-----cccEEEEEEccCCCEEEEEeCCC
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t-----~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+.-+|....|.||..|+ +-|..+..+.+ ...-.++.+|... -..|.+|+|.|.-..|+++++||
T Consensus 205 a~f~d~~~~alGsiEGr-v~iq~id~~~~----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGR-VAIQYIDDPNP----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred EEEecCCceEeeeecce-EEEEecCCCCc----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 99899888899999998 78888876411 2234566666311 12388999999999999999999
Q ss_pred cEEEEecCCC
Q 003336 403 TSHLFAINPL 412 (828)
Q Consensus 403 TVhIwdl~~~ 412 (828)
|.-.||-..-
T Consensus 274 tf~FWDkdar 283 (347)
T KOG0647|consen 274 TFSFWDKDAR 283 (347)
T ss_pred eEEEecchhh
Confidence 9999998653
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=5.3e-10 Score=123.80 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=130.7
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
+.|.|||.+|.+.++.++. +..|.+++|- .++++.+.|..|.+|++..+..+-++-+|+.. .
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------------v 289 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------------V 289 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------e
Confidence 7899999999999999875 6799999994 67888899999999999998877777666431 1
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
++++ |.+ + +. .
T Consensus 290 ~~Id----aL~----------r------------------eR-----------~-------------------------- 300 (479)
T KOG0299|consen 290 LGID----ALS----------R------------------ER-----------C-------------------------- 300 (479)
T ss_pred eeec----hhc----------c------------------cc-----------e--------------------------
Confidence 1110 000 0 00 0
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
+..++.|.+++||++.. ...-.|.+|.+.|-|++|=.+ ..|+|||++|. |-+|++.
T Consensus 301 ---------------------vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~ 356 (479)
T KOG0299|consen 301 ---------------------VTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLL 356 (479)
T ss_pred ---------------------EEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeec
Confidence 01134688999999954 344578899999999999655 46999999998 8999987
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCcc--------ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTN--------AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~--------a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
...+ ..++.+-.|..+ ..|.+++-.|.+.++|+||-+|.|+||.++++
T Consensus 357 KKkp------------lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 357 KKKP------------LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCc------------eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 6411 122222122111 25999999999999999999999999999875
No 124
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.22 E-value=2.1e-09 Score=116.41 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=140.0
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
..-.||++.+|+...++. ++..|.++.|| +.+||. .++++|.||+..++.....+... .+-
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---------------~~d 150 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---------------VED 150 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc---------------cCc
Confidence 456899999999888875 68899999997 778887 57899999999999877777421 011
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
| .||-+...
T Consensus 151 i----eWl~WHp~------------------------------------------------------------------- 159 (399)
T KOG0296|consen 151 I----EWLKWHPR------------------------------------------------------------------- 159 (399)
T ss_pred e----EEEEeccc-------------------------------------------------------------------
Confidence 2 25554310
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
+. .++.+..||.|-+|.+.++...+.|.+|..+++|=.|.|||+.++|+..||+ |++|+..
T Consensus 160 ---------------a~---illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~k 220 (399)
T KOG0296|consen 160 ---------------AH---ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPK 220 (399)
T ss_pred ---------------cc---EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecC
Confidence 00 1234567899999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
++ ..++++.. .......+++++.++..+..++.++.+++-...+++=..+..
T Consensus 221 tg--------------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 221 TG--------------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred CC--------------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 87 33444421 112236789999999999999999999997776543333333
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.1e-10 Score=114.07 Aligned_cols=248 Identities=16% Similarity=0.209 Sum_probs=161.8
Q ss_pred CcEEEEEccCCeEEEEecCCC--ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD--NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~--~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.++..++.+..++|+.+...+ .....|..|.|||--+.+.- |.+ -.+||-|+
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah-Pk~-----------G~iLAScs-------------- 77 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH-PKF-----------GTILASCS-------------- 77 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc-ccc-----------CcEeeEee--------------
Confidence 566666777779999998865 34455667999999998862 221 12666554
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC---CCCEEEEEEc----CCEEEE-EeCCEEEEEECCCC-c
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATL-E 166 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~-~ 166 (828)
+++.|.||.-.+|+.-+...+ .+.|.+|++- +-+||+ +.|++|.|++..+- .
T Consensus 78 -------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 78 -------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred -------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 337899999998865544443 6789999995 556776 68899999988753 2
Q ss_pred eE-EE-EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003336 167 IE-YA-ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (828)
Q Consensus 167 ~l-~t-L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ss 244 (828)
-. .. ...|+ ++++.++ .++ ... .|..+
T Consensus 139 w~t~ki~~aH~------------~GvnsVs-------wap-------------a~~-----------~g~~~-------- 167 (299)
T KOG1332|consen 139 WTTSKIVFAHE------------IGVNSVS-------WAP-------------ASA-----------PGSLV-------- 167 (299)
T ss_pred ccchhhhhccc------------cccceee-------ecC-------------cCC-----------Ccccc--------
Confidence 11 11 11121 2333332 221 000 01111
Q ss_pred cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCC
Q 003336 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKS 322 (828)
Q Consensus 245 k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~ 322 (828)
+.+ .+.+ ...|++++.|..|+||+..+++ .-.+|++|+.
T Consensus 168 -----------~~~--------------------~~~~--------~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d 208 (299)
T KOG1332|consen 168 -----------DQG--------------------PAAK--------VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD 208 (299)
T ss_pred -----------ccC--------------------cccc--------cceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence 000 0000 0135677889999999999863 3345899999
Q ss_pred CeEEEEEcCCC----CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 323 PISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 323 pIsaLaFSPdG----~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
-|..+++.|.- .+||++|.||+ +-||..... . ..+ +...|.+| +..++.++||..|..||++
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e-~-----e~w--k~tll~~f-----~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE-Y-----EPW--KKTLLEEF-----PDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc-c-----Ccc--cccccccC-----CcceEEEEEeccccEEEEe
Confidence 99999999974 47999999999 679987632 0 001 11122222 2359999999999999999
Q ss_pred eCCCcEEEEecCCCCC
Q 003336 399 SSRGTSHLFAINPLGG 414 (828)
Q Consensus 399 S~DGTVhIwdl~~~gg 414 (828)
..|..|.+|.=+..|.
T Consensus 275 ~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 275 GGDNKVTLWKENVDGK 290 (299)
T ss_pred cCCcEEEEEEeCCCCc
Confidence 9999999998766543
No 126
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=8.9e-11 Score=128.27 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=129.1
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.++++.+-+.++-.||++. ......-.-++-.|.+++|.+++. -+++++.+
T Consensus 325 ~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk-------------~vl~v~~d--------------- 375 (519)
T KOG0293|consen 325 FRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGK-------------YVLLVTVD--------------- 375 (519)
T ss_pred ceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCc-------------EEEEEecc---------------
Confidence 3456666677899999985 222222223345588888877531 14444432
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
..|++|+..+...+..+.-..+|.++..| ++++.| ..+.+|++||+...+.++...+|
T Consensus 376 -------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 376 -------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred -------------------cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 56999999998888878888999999997 566666 56778999999966555554444
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
.. + -+.+ .+.+| |
T Consensus 437 kq--~------------~fiI-------------rSCFg-------------------g--------------------- 449 (519)
T KOG0293|consen 437 KQ--G------------HFII-------------RSCFG-------------------G--------------------- 449 (519)
T ss_pred cc--c------------ceEE-------------EeccC-------------------C---------------------
Confidence 21 0 0100 00000 0
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccC-CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-C
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN-GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S 332 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~-g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-d 332 (828)
.+ .-+++|+.|+.|+||+..++++++.+.+|...|+||+++| +
T Consensus 450 -----------------------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 450 -----------------------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred -----------------------------------CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 00 0124577899999999999999999999999999999999 6
Q ss_pred CCEEEEEecCCCEEEEEeCCC
Q 003336 333 GILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~ 353 (828)
-.+||+||+||+ ||||-..+
T Consensus 495 p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCe-EEEecCCc
Confidence 679999999999 89997754
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=2.8e-10 Score=121.28 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=56.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
++.++..||.|.|||..+-.++.+|++|++.|+.|+..|+|++-.+-+.|+. +++|++..+
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~G 159 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRG 159 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcC
Confidence 3556778999999999999999999999999999999999999999999986 899999887
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.18 E-value=1.8e-10 Score=128.03 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=86.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC-------------CCCCccCC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-------------GTSSACDA 364 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~-------------~~~~~~~~ 364 (828)
..||.|.|||+.+...+.+|++|+..++||..++||+.|=||+-|.+ +|-||++.+.. +.....+|
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqhdF~SQIfSLg~cP~~dW 606 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDW 606 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhhhhhhhheecccCCCccc
Confidence 35789999999999999999999999999999999999999999987 89999988621 11112222
Q ss_pred ------CCceeE-------EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 365 ------GTSYVH-------LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 365 ------~~~~~~-------l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
++.++. .|.|+ .....|.++.|++.|+|+++.+.|.-+-.|...
T Consensus 607 lavGMens~vevlh~skp~kyqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 607 LAVGMENSNVEVLHTSKPEKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred eeeecccCcEEEEecCCccceeec--ccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 122222 23342 223459999999999999999999999999873
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.18 E-value=1.2e-08 Score=114.21 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=83.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+++.+.|+.|+||+ ..+++.+.. -..|..|+.|+|.| .||.|...|+ --|.|+.+. .+.
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~---------------~lv 441 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQ---------------DLV 441 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEecccc---------------eeE
Confidence 467788999999999 444444432 24689999999999 9999999998 458888763 344
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
+++.- ++.|..+.|||||.+||+||.|+.|.||.++..|.....
T Consensus 442 ~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 442 TIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 55433 567999999999999999999999999999998877644
No 130
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=1.1e-09 Score=116.57 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=91.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.++++.|.+..+||++++.++..+.+|.+..+.++-.|.-+|++|+|.|-+ +++||+++. ...+..
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFRea-------------I~sV~V 352 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREA-------------IQSVAV 352 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhh-------------cceeee
Confidence 567889999999999999999999999999999999999999999999966 999999864 223334
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc-eeecc
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQP 420 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~-~~~~~ 420 (828)
| .|++. .|.++.|.-|. .++++|+|.||+|||+.....+ .++++
T Consensus 353 F-QGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 353 F-QGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred e-ccccc-ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec
Confidence 4 57764 49999999886 5679999999999999765443 35554
No 131
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.15 E-value=7e-10 Score=118.52 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=84.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
....+-||.-..+.++..+-+|.+.|+.|+|-+||..|.+|+..--.|..||++.. ...+|.|.|..
T Consensus 228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------------~~pv~~L~rhv 294 (406)
T KOG2919|consen 228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------------RDPVYALERHV 294 (406)
T ss_pred ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------------cchhhhhhhhc
Confidence 34456677777889999999999999999999999999999987667999999874 34677776644
Q ss_pred c--cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 379 T--NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 379 t--~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
. +.+|+ ....|+|+|||+|+.||.|++||+..+|..+..
T Consensus 295 ~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 295 GDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred cCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 3 33343 344799999999999999999999998775543
No 132
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.15 E-value=7.6e-10 Score=117.58 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=54.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCC-CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~-pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
+++++.||.|+|||-.+++|+.+|. +|.+ .|.+..|..+|+++.+.+.|.. +++|.+.++
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~ 337 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTG 337 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCC
Confidence 4567889999999999999999997 8875 6999999999999999999976 899999886
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=5.1e-09 Score=111.50 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=152.4
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+|+...++.+++||++.. ..+ +.=.|.+|+-+++|.+. .-++++ +
T Consensus 26 ~~LLvssWDgslrlYdv~~~-~l~-~~~~~~~plL~c~F~d~----------------~~~~~G-~-------------- 72 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN-SLK-LKFKHGAPLLDCAFADE----------------STIVTG-G-------------- 72 (323)
T ss_pred CcEEEEeccCcEEEEeccch-hhh-hheecCCceeeeeccCC----------------ceEEEe-c--------------
Confidence 56667777778999999863 222 22246777776666531 111121 1
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCceEEEEEcC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
.++.|+.+|+.+++......+..+|.+|..+ +.+|+.+-|++|++||.++-.+..++..
T Consensus 73 -----------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~- 134 (323)
T KOG1036|consen 73 -----------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ- 134 (323)
T ss_pred -----------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-
Confidence 2388999999999988877888999999997 5677778999999999986222211111
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
++ +-|+++...
T Consensus 135 ----------------------------------------------------------~k--kVy~~~v~g--------- 145 (323)
T KOG1036|consen 135 ----------------------------------------------------------GK--KVYCMDVSG--------- 145 (323)
T ss_pred ----------------------------------------------------------Cc--eEEEEeccC---------
Confidence 00 001111100
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPS 332 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPd 332 (828)
..++-+..+..|.+||+++.....+.+ .-+-.+.||++-|+
T Consensus 146 -------------------------------------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 146 -------------------------------------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN 188 (323)
T ss_pred -------------------------------------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence 011223456789999999876544433 23457999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc-----cccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t-----~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
+.=+|.+|.||+ +-|=.+.+.+.. .+..-.++.||-.. ...|.+|+|+|--+.||+|+.||-|-+|
T Consensus 189 ~eGy~~sSieGR-VavE~~d~s~~~--------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 189 GEGYVVSSIEGR-VAVEYFDDSEEA--------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred CCceEEEeecce-EEEEccCCchHH--------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 999999999998 555444432100 01122233333221 1248999999999999999999999999
Q ss_pred ecCCCCCceeecc
Q 003336 408 AINPLGGSVNFQP 420 (828)
Q Consensus 408 dl~~~gg~~~~~~ 420 (828)
|+.+-+....|..
T Consensus 260 d~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 260 DLFNRKRLKQLAK 272 (323)
T ss_pred cCcchhhhhhccC
Confidence 9987655444433
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=124.19 Aligned_cols=106 Identities=19% Similarity=0.334 Sum_probs=86.2
Q ss_pred CcccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 292 GHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
+.|++++.||.|+|||++++ .++.+ ++|.+.|+.|.|+..-.+||+|++||+ ++|||++....+ +.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~---------~p 339 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSG---------QP 339 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCC---------Cc
Confidence 45788899999999999987 34444 899999999999999889999999998 899999976221 12
Q ss_pred eEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 003336 369 VHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.-.++.++ +.|++|.|+| +...||+++.|..|.||||...
T Consensus 340 VA~fk~Hk----~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 340 VATFKYHK----APITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeEEecc----CCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 33344432 4699999998 6778999999999999999753
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.14 E-value=4.3e-10 Score=121.99 Aligned_cols=119 Identities=17% Similarity=0.275 Sum_probs=90.6
Q ss_pred cccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 293 HFPDADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~---~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
.+++++..+.|++|...++. --..|.+|+..|-.|+|||. -..|||||.||+ |+|||++.++. .
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~-----------~ 293 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPK-----------K 293 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCc-----------c
Confidence 34567777899999888764 22356789999999999996 558999999998 99999998621 1
Q ss_pred eEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc---eeeccCCCCCC
Q 003336 369 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS---VNFQPTDANFT 426 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~---~~~~~H~~~~~ 426 (828)
.++.+ ..+ ...|+-|+|+.+-.+||+|++|||++||||..+... ..|+.|...+.
T Consensus 294 ~~~~~--kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 294 AAVST--KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred ceeEe--ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 12222 222 347999999999889999999999999999875443 46777765444
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.13 E-value=6.5e-09 Score=110.05 Aligned_cols=135 Identities=18% Similarity=0.281 Sum_probs=101.5
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc-----CCEEEEEe-CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcc
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-----SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S-----~riLAVs~-~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~ 189 (828)
+.++++||..|-+.+-.++++..||+-+++ --++|++. +-+|++.|+..+.+-++|.+|-.
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------- 189 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------- 189 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-------------
Confidence 489999999999999999999999998886 23556654 45899999999999999988742
Q ss_pred cceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccc
Q 003336 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (828)
Q Consensus 190 ~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~ 269 (828)
+.+|+. ++ |. + . |
T Consensus 190 -~vlaV~-----Ws-------------p~-------------~-e------------------------------~---- 202 (397)
T KOG4283|consen 190 -GVLAVE-----WS-------------PS-------------S-E------------------------------W---- 202 (397)
T ss_pred -ceEEEE-----ec-------------cC-------------c-e------------------------------e----
Confidence 234431 11 00 0 0 0
Q ss_pred cCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-c--------------EEEEeccCCCCeEEEEEcCCCC
Q 003336 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-N--------------VIAQFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 270 ~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~--------------~i~~f~aH~~pIsaLaFSPdG~ 334 (828)
.+++++.||.|++||++.. . .+.+-.+|.+.|..+||+.||.
T Consensus 203 -----------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 203 -----------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred -----------------------EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 1234567888999998742 1 1223347889999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~ 354 (828)
+|++.+.|.+ +++|+...|
T Consensus 260 ~l~~~gtd~r-~r~wn~~~G 278 (397)
T KOG4283|consen 260 YLASCGTDDR-IRVWNMESG 278 (397)
T ss_pred hhhhccCccc-eEEeecccC
Confidence 9999999987 899999876
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.12 E-value=1.3e-09 Score=120.71 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=78.0
Q ss_pred CCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 299 NVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 299 ~dG~V~IwDl~s~~-~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+-|...+||+++++ ....++-|...|..|+|+|- -.+|||||.|++ .+|||++.- .+..+ -.|+.+.
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-~~K~s--------p~lst~~- 367 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-RGKAS--------PFLSTLP- 367 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-cCCCC--------cceeccc-
Confidence 44678999999865 47788899999999999994 668999999998 799999864 11100 1344442
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|. ..|.+.+|||++-.|++.+.|.+|+|||..
T Consensus 368 -Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 368 -HR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred -cc-ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 22 349999999988889999999999999995
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2e-08 Score=107.07 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=76.3
Q ss_pred CCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC-CC---EEEEEecCCCEEEEEeCCCCCCCC----CCccCCC--
Q 003336 300 VGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS-GI---LLVTASVQGHNINIFKIIPGILGT----SSACDAG-- 365 (828)
Q Consensus 300 dG~V~IwDl~s~----~~i~~f~aH~~pIsaLaFSPd-G~---lLATaS~DGt~I~IWdi~~~~~~~----~~~~~~~-- 365 (828)
-+.++||..... ..++.+..|+.||..|+|.|+ |+ +||+|+.|| |+||.+......- ..+.+..
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccc
Confidence 357788865543 356788899999999999996 43 799999999 8999998531000 0000000
Q ss_pred CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
-.+..+..| .+| +..|+.++|.--|..|+++++||+|++|..+-
T Consensus 276 l~v~~vs~~-~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 276 LPVEKVSEL-DDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cceEEeeec-cCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 122233333 333 45799999999999999999999999999753
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.12 E-value=1.6e-09 Score=115.98 Aligned_cols=254 Identities=17% Similarity=0.251 Sum_probs=152.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.-+.+.||.+-++|.|+.. +.+..-+-.|.+.|..+++.|. +|-|+++..
T Consensus 106 p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~--------------~~qlvls~S--------------- 155 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPD--------------RPQLVLSAS--------------- 155 (385)
T ss_pred eeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCC--------------CCcEEEEec---------------
Confidence 4555667766689999987 4566666678899999988873 355555542
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe----CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~----f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
.+.+||+|+++++.||..+. ++..|.+|.|+ +++++. +.|.+|.+|++...+-...
T Consensus 156 -----------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 156 -----------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred -----------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 12789999999999999985 57899999997 556665 6888999999995443222
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
|+-. . .|.+++.... -|. +..-|+.++ .++..+..+.-
T Consensus 219 lE~s-~------------------------~~~~~~t~~p-----fpt---~~~~fp~fs---------t~diHrnyVDC 256 (385)
T KOG1034|consen 219 LELS-I------------------------TYSPNKTTRP-----FPT---PKTHFPDFS---------TTDIHRNYVDC 256 (385)
T ss_pred hhhh-c------------------------ccCCCCccCc-----CCc---ccccccccc---------ccccccchHHH
Confidence 2211 0 0111000000 000 000011100 00111111122
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC--------------CcEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS--------------KNVIAQ 316 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s--------------~~~i~~ 316 (828)
++++|+.. .+.+.++.|..|-... -..+..
T Consensus 257 vrw~gd~i------------------------------------lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 257 VRWFGDFI------------------------------------LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred HHHHhhhe------------------------------------eecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 23344331 1223344555554410 123445
Q ss_pred eccCCCCeEEEEE--cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCE
Q 003336 317 FRAHKSPISALCF--DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (828)
Q Consensus 317 f~aH~~pIsaLaF--SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 394 (828)
|.-....|.-|.| +|=++.||.+...|. +.+||+....+. ... ++......+.|+..+||.||.+
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~---------~~t---tl~~s~~~~tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPP---------KCT---TLTHSKSGSTVRQTSFSRDGSI 367 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCc---------cCc---eEEeccccceeeeeeecccCcE
Confidence 5544556666554 667999999999998 899999875221 011 1211222345999999999999
Q ss_pred EEEEeCCCcEEEEec
Q 003336 395 IMISSSRGTSHLFAI 409 (828)
Q Consensus 395 LAs~S~DGTVhIwdl 409 (828)
|+..++|+||--||-
T Consensus 368 lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 368 LVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEeCCCcEEEEEe
Confidence 999999999999985
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=7.1e-09 Score=119.28 Aligned_cols=189 Identities=20% Similarity=0.265 Sum_probs=131.2
Q ss_pred CCEEEEEECCCCcEEEEE-eC--CCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 116 PTVVHFYSLRSQSYVHML-KF--RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL-~f--~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
.+.|.||+++.+=+.... .. .+.|.+++|. .|++.+.+++.|.-||+.+++.++.+...... +-
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~----------IW- 114 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA----------IW- 114 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc----------ee-
Confidence 378999999986544332 22 5689999996 67888899999999999999988777542110 00
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
.||+ . |. + .
T Consensus 115 -siai-------~-------------p~--------------~-----------~------------------------- 123 (691)
T KOG2048|consen 115 -SIAI-------N-------------PE--------------N-----------T------------------------- 123 (691)
T ss_pred -EEEe-------C-------------Cc--------------c-----------c-------------------------
Confidence 0111 0 10 0 0
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEE
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~--~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~I 348 (828)
.++-+..+|.+.++++..++... .|..-++.|-+|+|+|+|+.||+|+.||. |+|
T Consensus 124 ----------------------~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iri 180 (691)
T KOG2048|consen 124 ----------------------ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRI 180 (691)
T ss_pred ----------------------eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-EEE
Confidence 01123466766667776665433 35566789999999999999999999996 999
Q ss_pred EeCCCCCCCCCCccCCCCceeE-----EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 349 FKIIPGILGTSSACDAGTSYVH-----LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~-----l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
||...+ ...+ +.++.++. ..-|+++.|=.|+ .||+|.+.|||.+||-..+.-..++..|..
T Consensus 181 wd~~~~------------~t~~~~~~~~d~l~k~~-~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 181 WDVKSG------------QTLHIITMQLDRLSKRE-PTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEcCCC------------ceEEEeeecccccccCC-ceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 999886 1233 33443332 2348999998776 678999999999999988766666666654
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=118.98 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=89.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCC-----ccCCCCc
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS-----ACDAGTS 367 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~-----~~~~~~~ 367 (828)
.+.+++.|.++++||+..+..+.++.- ..+|.|++.+|-++.+..|..+|. |.+.++...+ +.+. ..+. .
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~-~~~~~v~~k~~~~--~ 264 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS-GQSAGVNQKGRHE--E 264 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeeehhcCC-ccccccccccccc--c
Confidence 345677899999999999998888753 468999999999999999999997 7777776541 1000 0001 1
Q ss_pred eeEEEEEecCCcc-ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 368 YVHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 368 ~~~l~~L~RG~t~-a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
...+..|. |+.. ..|.+++.|-||..|++|+.||+|.|||+..-.+..++.
T Consensus 265 ~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 265 NTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 12233343 4444 459999999999999999999999999998765555544
No 142
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.2e-08 Score=104.54 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=84.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec--cC-----CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR--AH-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~--aH-----~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
|++++.|.+|+.||++-..++.++. -| .+.|.+++.+|+|++||++-.|.. ..+||++-+
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~------------ 263 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGG------------ 263 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCC------------
Confidence 4567789999999999888888765 23 267999999999999999999976 789999876
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+.+.+++. ..+.|.++-|||-..|+.++|-|..|++=|+.
T Consensus 264 --r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 --RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred --ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 56666653 24679999999999999999999999999885
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.10 E-value=8.8e-10 Score=125.81 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCeEEEEECCCCc------EEEE--eccC---CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 299 NVGMVIVRDIVSKN------VIAQ--FRAH---KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 299 ~dG~V~IwDl~s~~------~i~~--f~aH---~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
.|+.|+|||+.... ++.. +.-| ...+.+|..+..|++|.....|++ |..|++.....
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~----------- 305 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSI----------- 305 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCc-----------
Confidence 58999999998643 2222 2233 236889999999998777777887 89999876411
Q ss_pred eeEEEEEecCCcccc-EEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce-eeccCCCCCCcccCCCCccceecCCCC
Q 003336 368 YVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFTTKHGAMAKSGVRWPPNL 443 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~-~~~~H~~~~~~~~~~~~~~~~r~~~~s 443 (828)
..+..+ -|..... -..-+.|||+.+|++|+.|..+.||.++.....+ .+.+|+-... +++|.+..
T Consensus 306 -sP~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt---------~V~w~pS~ 372 (720)
T KOG0321|consen 306 -SPVAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT---------TVRWLPSA 372 (720)
T ss_pred -Cchhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE---------EEeecccc
Confidence 011111 1111111 1234579999999999999999999999876655 4567754433 56666554
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=7.5e-09 Score=122.31 Aligned_cols=218 Identities=15% Similarity=0.230 Sum_probs=143.2
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
+++...-++.+++|.... ++...++-+-.-|++++++.- .+.++|..++
T Consensus 68 ~f~~~s~~~tv~~y~fps-~~~~~iL~Rftlp~r~~~v~g--------------~g~~iaagsd---------------- 116 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPS-GEEDTILARFTLPIRDLAVSG--------------SGKMIAAGSD---------------- 116 (933)
T ss_pred ceEEeeccceEEEeeCCC-CCccceeeeeeccceEEEEec--------------CCcEEEeecC----------------
Confidence 344444455577777765 445556666566666666542 1224433332
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
+..|++-++.+....+.++ +..+|..|.++ +.+||| +-+++++|||+.++.+.+++..-
T Consensus 117 -----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 117 -----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred -----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 2679999999988888776 57899999996 678888 56899999999999988887542
Q ss_pred CCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.- + +-+..+. .-+|+
T Consensus 180 ~k---~----------n~~~~s~i~~~~aW-------------------------------------------------- 196 (933)
T KOG1274|consen 180 DK---D----------NEFILSRICTRLAW-------------------------------------------------- 196 (933)
T ss_pred Cc---c----------ccccccceeeeeee--------------------------------------------------
Confidence 10 0 0000000 00011
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEc
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFD 330 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFS 330 (828)
.|+ +|+++....++.|++|+..+......++ -|.+.+++++||
T Consensus 197 -----------------~Pk------------------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 197 -----------------HPK------------------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred -----------------cCC------------------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 111 1234445568899999999988877776 334459999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCc
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGT 403 (828)
|.|+|||+++.||. |-|||..+. .+| .++ ..|.+++|-|++.-|-.-..-|+
T Consensus 242 PnG~YiAAs~~~g~-I~vWnv~t~-------------~~~--~~~-----~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQ-ILVWNVDTH-------------ERH--EFK-----RAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred CCCcEEeeeccCCc-EEEEecccc-------------hhc--ccc-----ceeEEEecCCCCCeeEEEeeccc
Confidence 99999999999998 899999864 112 221 23888888888776544444333
No 145
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.10 E-value=1.6e-10 Score=127.85 Aligned_cols=210 Identities=16% Similarity=0.200 Sum_probs=136.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE--cCCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~--S~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piA 194 (828)
+.|-.+|..|+++...|.....|++|.| +.+++||++..-++|||- .+..+++|..+..+. -+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v~-------------rL- 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRVA-------------RL- 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCchh-------------hh-
Confidence 6788899999999999999999999999 689999999999999995 466688887653211 11
Q ss_pred eccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCC
Q 003336 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (828)
Q Consensus 195 lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~ 274 (828)
.||-|.---+..+..|.+.-+. -|.|..|+......+ +.. .+
T Consensus 216 ---eFLPyHfLL~~~~~~G~L~Y~D----------VS~GklVa~~~t~~G-----------~~~----------vm---- 257 (545)
T KOG1272|consen 216 ---EFLPYHFLLVAASEAGFLKYQD----------VSTGKLVASIRTGAG-----------RTD----------VM---- 257 (545)
T ss_pred ---cccchhheeeecccCCceEEEe----------echhhhhHHHHccCC-----------ccc----------hh----
Confidence 1111110000000112111110 023333332221111 100 00
Q ss_pred CCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 275 ~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
.-+| .|+ .+-.+...|+|.+|.-.+.+++..+-+|.++|++|+++++|+|+||++.|.. ++|||++..
T Consensus 258 ----~qNP---~Na----Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~ 325 (545)
T KOG1272|consen 258 ----KQNP---YNA----VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNF 325 (545)
T ss_pred ----hcCC---ccc----eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccc
Confidence 0011 112 2234567899999999999999999999999999999999999999999976 899999975
Q ss_pred CCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 355 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.++.+++- +.....++||.-|- ||. |.-.-|+||.=.
T Consensus 326 --------------~ql~t~~t---p~~a~~ls~Sqkgl-LA~-~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 326 --------------YQLHTYRT---PHPASNLSLSQKGL-LAL-SYGDHVQIWKDA 362 (545)
T ss_pred --------------cccceeec---CCCccccccccccc-eee-ecCCeeeeehhh
Confidence 34444432 33467899998773 333 334468888643
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=7.5e-10 Score=122.79 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
-.|.+.+|.+.+|..+..+.+|-.+|+||.|+-||.+|+|||.||. |++|++..-.. .+.......++.|. +|
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~-----a~~~~~~~p~~~f~-~H 173 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVS-----ADNDHSVKPLHIFS-DH 173 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeecc-----cccCCCccceeeec-cC
Confidence 5689999999999999999999999999999999999999999998 89998865311 01111334555664 34
Q ss_pred ccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCC
Q 003336 379 TNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 379 t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+- .|.|+...+ -..+|+++|.|.||++||++.+
T Consensus 174 tl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 174 TL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred cc-eeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 43 488887655 4678999999999999999875
No 147
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.6e-09 Score=115.61 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=92.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC--EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~--lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
++++.|-+|+|||+.+.+.+..+--|.+.|+||.|++.-. .|.+|++||+ |-|||..+. ..+.
T Consensus 57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~-i~iw~~~~W--------------~~~~ 121 (362)
T KOG0294|consen 57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH-IIIWRVGSW--------------ELLK 121 (362)
T ss_pred eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc-EEEEEcCCe--------------EEee
Confidence 4567888999999999999999999999999999999876 8999999998 789999764 4555
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
.| +++.. .|++|+..|-|++-.+.+.|+++++|+|-.+..-..+
T Consensus 122 sl-K~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 122 SL-KAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred ee-ccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 66 56664 4999999999999999999999999999886554443
No 148
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=1e-07 Score=104.53 Aligned_cols=112 Identities=8% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCcEEE-------EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 299 NVGMVIVRDIVSKNVIA-------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~-------~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
.++.|.|||+.+...+. .+... .....++|+|||++|+++......|.+||+... . +....+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~---------~~~~~~ 214 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-H---------GEIECV 214 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------CCEEEE
Confidence 45789999997643221 12222 235679999999999888874445999999742 0 012233
Q ss_pred EEEecC---Cc-cccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCceeeccC
Q 003336 372 YRLQRG---LT-NAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 372 ~~L~RG---~t-~a~I~sIaFSpDg~~LAs~S~-DGTVhIwdl~~~gg~~~~~~H 421 (828)
.++... .. ......|+|+||+++|.++.. +++|.+|++.+.++...+..|
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 333210 00 011346999999999999854 789999999876655555443
No 149
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=6.9e-08 Score=105.85 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCCeEEEEECCC--C--cEEEEeccC------CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 299 NVGMVIVRDIVS--K--NVIAQFRAH------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 299 ~dG~V~IwDl~s--~--~~i~~f~aH------~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
.++.|.+||+.. + +.+..+..+ ......+.|+|||++|+++......|.||++... ....
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~----------~~~~ 264 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED----------GSVL 264 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC----------CCeE
Confidence 357888888863 2 234444322 1123468999999999998765456999999653 0011
Q ss_pred eEEEEEecCCccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCce
Q 003336 369 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV 416 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~-DGTVhIwdl~~~gg~~ 416 (828)
..+....-|. ....++|+|||++|+++.. +++|.||+++...+..
T Consensus 265 ~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 265 SFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1222222221 2457899999999998886 8999999997654433
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.8e-09 Score=113.96 Aligned_cols=98 Identities=16% Similarity=0.310 Sum_probs=78.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
.+..|.|.|.-..+++.+.+|+- .+.|+.++|+.||+.|...+.+|. |.|||+... .+.+.+.-..
T Consensus 321 ~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~------------~~~~rf~D~G 386 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN------------SCLHRFVDDG 386 (514)
T ss_pred cccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc------------ceEEEEeecC
Confidence 35668888888888888888874 367999999999999999999997 899999875 2334333322
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+. .=.++|.|+++.|||+||..|-|-|||.+.
T Consensus 387 ~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 387 SV---HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cc---ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 22 146899999999999999999999999875
No 151
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.5e-08 Score=111.29 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=54.9
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
.+++|+|||++|+.++.++ +.+||+.++ .... +..+. ...+++|+|||++|+.++.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g------------~~~~---lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLTSG------------STEV---LSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECCCC------------CeEE---ecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 4578999999999888764 456998775 1122 21121 24578899999999999999999
Q ss_pred EEEecCC--CCCceeeccCC
Q 003336 405 HLFAINP--LGGSVNFQPTD 422 (828)
Q Consensus 405 hIwdl~~--~gg~~~~~~H~ 422 (828)
.+|.+.. ++....+..|.
T Consensus 396 ~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 396 KVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred eEEEEEECCCCceEEccCCC
Confidence 9998753 33344565554
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.9e-08 Score=112.56 Aligned_cols=233 Identities=13% Similarity=0.168 Sum_probs=158.7
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+++.+|.++.+.-||+.+ .+....+..--|++-.+++-|.. -.++|.+++
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~~--------------~~l~Igcdd------------- 131 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPEN--------------TILAIGCDD------------- 131 (691)
T ss_pred CCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCcc--------------ceEEeecCC-------------
Confidence 36788888888899999987 34444444456788888776631 134444331
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC---CCCEEEEEEcC--C-EEEEEeCCEEEEEECCCCceEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCSS--R-VVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S~--r-iLAVs~~~~I~IwDl~t~~~l~t 170 (828)
+.+.+.+...++......| .+.|.+|.|++ . ++..+.|+.|+|||+.++..++.
T Consensus 132 --------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 132 --------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred --------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence 4566667766766665555 57899999983 3 44457888999999999887663
Q ss_pred EEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
+... + +-++. ..|+++
T Consensus 192 ~~~~-----~------------d~l~k~~~~iVWS--------------------------------------------- 209 (691)
T KOG2048|consen 192 ITMQ-----L------------DRLSKREPTIVWS--------------------------------------------- 209 (691)
T ss_pred eeec-----c------------cccccCCceEEEE---------------------------------------------
Confidence 3211 0 00000 011111
Q ss_pred ceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003336 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLa 328 (828)
+..| . .+++++++..|+|+.||...+..+..++.|...|.||+
T Consensus 210 --v~~L----------------r-------------------d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 210 --VLFL----------------R-------------------DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred --EEEe----------------e-------------------cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 0000 0 12456678889999999999999999999999999999
Q ss_pred EcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 329 FSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
-++++.++++|+.|+++|++...... . +-+...+|.+..+.|.++|..++ .|.+|+.|.++-+=.
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~------------~-~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNK------------S-EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCc------------c-ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 99999999999999997665544332 1 12233445555567999999998 888999999987755
Q ss_pred cCC
Q 003336 409 INP 411 (828)
Q Consensus 409 l~~ 411 (828)
...
T Consensus 318 s~~ 320 (691)
T KOG2048|consen 318 SRE 320 (691)
T ss_pred ccc
Confidence 543
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.04 E-value=3.9e-07 Score=96.15 Aligned_cols=182 Identities=19% Similarity=0.310 Sum_probs=128.9
Q ss_pred CEEEEEECCC-CcEEEEEeC-CCCEEEEEEc--CCEEEEEe--CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 117 TVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 117 ~tVrlWDL~T-g~~V~tL~f-~s~V~sV~~S--~riLAVs~--~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
+++++||..+ ...+..+.. ...|..+.|+ .+.++++. ++.+++||+.+.+.+.++..|...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 200 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------- 200 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc-------------
Confidence 7899999998 677776665 5688889996 44566543 889999999987766666553210
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
+ ..++|.. .+..
T Consensus 201 --v----~~~~~~~---------------------------~~~~----------------------------------- 212 (466)
T COG2319 201 --V----SSLAFSP---------------------------DGGL----------------------------------- 212 (466)
T ss_pred --e----EEEEEcC---------------------------Ccce-----------------------------------
Confidence 0 0122220 0000
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEE
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIF 349 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~-~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IW 349 (828)
.+++...++.|++||...+..+. .+..|...+ ...|+|++.++++++.|+. +++|
T Consensus 213 ----------------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~ 268 (466)
T COG2319 213 ----------------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLW 268 (466)
T ss_pred ----------------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEe
Confidence 01112467889999999888888 799998885 4489999999999999998 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 350 di~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
++... . ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.........
T Consensus 269 ~~~~~------------~-~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 269 DLRSS------------S-SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred eecCC------------C-cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 99865 1 123333 333 345999999999999999999999999988765444333
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=3.2e-09 Score=114.27 Aligned_cols=105 Identities=20% Similarity=0.298 Sum_probs=78.5
Q ss_pred CCeEEEEECCCCcE-EEE-eccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 300 VGMVIVRDIVSKNV-IAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 300 dG~V~IwDl~s~~~-i~~-f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+-.|.+||++..+. +.. +..|...|++|+|.| +-.+|+|||.||- |+|||+..... +.... ..+.-
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~E--------eDaL~--~viN~ 210 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNE--------EDALL--HVINH 210 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcc--------hhhHH--Hhhcc
Confidence 45799999997654 554 459999999999999 5779999999996 89999986411 11122 22322
Q ss_pred CCccccEEEEEEccCC-CEEEEEeCCCcEEEEecCCCCCceee
Q 003336 377 GLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg-~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
| +.|-.|.|..++ +.|.+-+..+|..+|+++...+...+
T Consensus 211 ~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 211 G---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred c---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 2 348999999888 45888899999999999987644433
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=4.2e-10 Score=130.61 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=87.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+++|+.||.|++||++..+-..+|.+....|..|+|+| .+..+|++.+.|. +.+||++.. .+...
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp-------------~r~~~ 214 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQP-------------DRCEK 214 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCc-------------hhHHH
Confidence 46789999999999999999999999889999999999 6889999999887 899999864 11222
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+| ..+...|.++.|+|+..|||+|+.|++|+||+......
T Consensus 215 k~--~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 215 KL--TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred Hh--hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 22 12234599999999999999999999999999975433
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.7e-08 Score=114.72 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=174.4
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+...-|+.|.+.| ++||-|.+ +-+...+. -|+.|++|++-|.+ ..++||++.+... ..+.+.
T Consensus 410 p~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~------------~~~vLAvA~~~~~---~ivnp~ 472 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLS------------DLCVLAVAVGECV---LIVNPI 472 (733)
T ss_pred CCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCC------------CceeEEEEecCce---EEeCcc
Confidence 3467788888777 99999998 44444443 48899999999864 3468887775431 011111
Q ss_pred cccc-cCC-CCCCCCCCCCCCcCCCEEEEEECCC---Cc--EEEEEeCCCCEEEEEEc--CCEEEEEeC----CEEEEEE
Q 003336 95 LATA-CNG-TSANYHDLGNGSSVPTVVHFYSLRS---QS--YVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFD 161 (828)
Q Consensus 95 ~~~~-~~g-~~~~~h~~g~~~~~~~tVrlWDL~T---g~--~V~tL~f~s~V~sV~~S--~riLAVs~~----~~I~IwD 161 (828)
.+.. -.+ +.-..+...+....+.+|-.|.-.. ++ .-.+|++..+|..|.+. +++||+... ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 1100 000 0000111123344557888996542 22 22457889999999996 788887543 5899999
Q ss_pred CCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeec
Q 003336 162 AATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK 241 (828)
Q Consensus 162 l~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~ 241 (828)
+....-. .| +.-++| .+++ ..|....+. .+ -+....|..|-.
T Consensus 553 LSK~~sQ-----~P----F~kskG-----~vq~-----v~FHPs~p~----------lf---------VaTq~~vRiYdL 594 (733)
T KOG0650|consen 553 LSKRKSQ-----SP----FRKSKG-----LVQR-----VKFHPSKPY----------LF---------VATQRSVRIYDL 594 (733)
T ss_pred ccccccc-----Cc----hhhcCC-----ceeE-----EEecCCCce----------EE---------EEeccceEEEeh
Confidence 8754321 00 000000 0111 111110000 00 000111222221
Q ss_pred ---ccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEe
Q 003336 242 ---ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQF 317 (828)
Q Consensus 242 ---~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~~~i~~f 317 (828)
+.-|.|..|..++.-+. ..|. | ..++-++.++.+..+|+.- .++.+++
T Consensus 595 ~kqelvKkL~tg~kwiS~ms----------ihp~---------------G---Dnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 595 SKQELVKKLLTGSKWISSMS----------IHPN---------------G---DNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred hHHHHHHHHhcCCeeeeeee----------ecCC---------------C---CeEEEecCCCeeEEEEcccCcchhHHh
Confidence 22233433433332221 0111 1 1234567889999999984 4688899
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc---cEEEEEEccCCCE
Q 003336 318 RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA---VIQDISFSDDSNW 394 (828)
Q Consensus 318 ~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a---~I~sIaFSpDg~~ 394 (828)
+-|...|++|+|++.=-|||+||.||+ +.||--+-... . -.+.....+.+| |||... .|.+++|.|.--|
T Consensus 647 r~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~D---l--~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 647 RLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYND---L--LQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred hhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeehh---h--hcCCceEeeeec-cCceeecccceEeecccCCCce
Confidence 999999999999999999999999999 67885443200 0 001123455555 455432 2889999999999
Q ss_pred EEEEeCCCcEEEE
Q 003336 395 IMISSSRGTSHLF 407 (828)
Q Consensus 395 LAs~S~DGTVhIw 407 (828)
|.+++.||||++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 157
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=1.7e-08 Score=107.52 Aligned_cols=97 Identities=15% Similarity=0.266 Sum_probs=79.0
Q ss_pred cCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 297 ADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 297 ~~~dG~V~IwDl~s-~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.+.|-+.++||+.. -..+..|++|+..|+++.|.-|-+ ++++|+|.+ |+|||++.- ...|.+++
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT-vKvWdLrNM-------------RsplATIR 396 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT-VKVWDLRNM-------------RSPLATIR 396 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCce-EEEeeeccc-------------cCcceeee
Confidence 45677899999984 356789999999999999998876 789999987 899999874 11344553
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+...++.|+.|.-+..||+--+.+.|+|||++-
T Consensus 397 ---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 397 ---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ---cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 234589999999999999999999999999974
No 158
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.01 E-value=2.8e-08 Score=116.28 Aligned_cols=98 Identities=9% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 299 NVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 299 ~dG~V~IwDl~-s~~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
.|-+|+||.-. ...++-.+..+...|++++|||. -..||++..||+ |.|||+.....+. +.+...
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~P------------v~s~~~ 484 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEP------------VLSQKV 484 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCC------------cccccc
Confidence 38999999988 77888999999999999999996 578999999998 8999998652211 112222
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+ ......+.|+++|+.||+|...|++|+|++..
T Consensus 485 ~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 C--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 2 23367788999999999999999999999965
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.9e-09 Score=119.87 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
...|+|||+..+..++.+..-..-|+.|+.+|.|.-|+.++.|+. +.+||+... .+-|+..|-|.
T Consensus 586 q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldls--------------skPyk~lr~H~ 650 (733)
T KOG0650|consen 586 QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLS--------------SKPYKTLRLHE 650 (733)
T ss_pred ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccC--------------cchhHHhhhhh
Confidence 457999999998877777766678999999999999999999998 779998764 12233334444
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
. .|.+|+|.+-=.++|++|+|||++||.-.-|
T Consensus 651 ~-avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 651 K-AVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred h-hhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 3 4999999999999999999999999975443
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.00 E-value=1.4e-08 Score=107.31 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=76.4
Q ss_pred ccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCC-------CCCCccCC
Q 003336 294 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGIL-------GTSSACDA 364 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s-~~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~-------~~~~~~~~ 364 (828)
++++++||.|+|||.+. +.++..+.+|.+-|.++.|+|. .+|+.|++.|-. +.+|-...-.. ...+....
T Consensus 230 lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~ 308 (370)
T KOG1007|consen 230 LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESED 308 (370)
T ss_pred EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcc
Confidence 35677899999999985 5689999999999999999995 668889999976 77886543210 00011000
Q ss_pred CCceeEEEEEecC----Ccc--ccEEEEEEccCCCE-EEEEeCCCcEEEEecCC
Q 003336 365 GTSYVHLYRLQRG----LTN--AVIQDISFSDDSNW-IMISSSRGTSHLFAINP 411 (828)
Q Consensus 365 ~~~~~~l~~L~RG----~t~--a~I~sIaFSpDg~~-LAs~S~DGTVhIwdl~~ 411 (828)
....++..-|.-| .+. ..|++++||.-.-| +|+-|-||.+.|=.+.+
T Consensus 309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0011111112111 111 23999999875555 66778899998866654
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.00 E-value=1.8e-07 Score=104.86 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
...|.-.|.|.++...+ +++-...++++++|+|||.+||.||.|+. |.||.+... ..++.++.+
T Consensus 425 t~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~-------------g~~y~r~~k- 488 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN-------------GRKYSRVGK- 488 (626)
T ss_pred eccceEEEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC-------------CcEEEEeee-
Confidence 34577788898885444 44433889999999999999999999997 899998764 122222221
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
...+.|..+.||+|+++|.+-|-|-.+-.|+-
T Consensus 489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred ecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 22267999999999999999999999999943
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.98 E-value=1.3e-08 Score=112.92 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=73.9
Q ss_pred cccCCCCeEEEEECCCC---c-EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 295 PDADNVGMVIVRDIVSK---N-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~---~-~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
++++.|++++|||++.. . ++-..-.|+.+|.+..|||+|-.|+|.+.|.+ |+|||..-- +. -..+.....|
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~--sa--~~~p~~~I~H 413 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI--SA--KDEPLGTIPH 413 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc--cc--cCCccceeec
Confidence 45667899999999853 2 34445589999999999998777999999977 999998411 00 0000001111
Q ss_pred EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
-...-|-. ......|.||-.+|+++-.-..|-|||-+
T Consensus 414 n~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 414 NNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred cCcccccc---cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 11111212 15668899999999999999999998764
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.97 E-value=2.2e-09 Score=117.57 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=98.1
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC--CCCCcc
Q 003336 294 FPDADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSAC 362 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~---------~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~--~~~~~~ 362 (828)
+++++.|..|+||-+... +.+..+..|...|+++.|+|+|.+||+|+++|. |.+|....-.. ... ..
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~~~d~-e~ 106 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIFDADT-EA 106 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCccccc-hh
Confidence 567788999999987642 246678899999999999999999999999997 78997652100 000 11
Q ss_pred CCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCCC
Q 003336 363 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (828)
Q Consensus 363 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~~ 426 (828)
+.....+.+.+.-|||. ..|++++|+||+.++++++-|.++++||++.+.-...+..|..-..
T Consensus 107 ~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred hhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 12233455566667764 5699999999999999999999999999998766666666655433
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=9.7e-09 Score=107.52 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.|..+..-||++.||||+.||+ ||||.-++..+ .-+.+.++ +.|++++||||...+|++|.|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~p------------LAVLkyHs----agvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNP------------LAVLKYHS----AGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEeccCCc------------hhhhhhhh----cceeEEEeCCCCchhhhccCCc
Confidence 3666788999999999999998 99999887611 12223333 4599999999999999999999
Q ss_pred cEEEEec
Q 003336 403 TSHLFAI 409 (828)
Q Consensus 403 TVhIwdl 409 (828)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999987
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.94 E-value=1.1e-06 Score=92.68 Aligned_cols=223 Identities=19% Similarity=0.354 Sum_probs=149.4
Q ss_pred Ec-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCC
Q 003336 24 GY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGT 102 (828)
Q Consensus 24 Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~ 102 (828)
+. ++.+.+||+.........+..|...|+.+.+.|... .++.+..
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~-------------------- 175 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--------------LLASGSS-------------------- 175 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC--------------EEEecCC--------------------
Confidence 44 557899999863345566667888889888877421 2222211
Q ss_pred CCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CC-EEEE-EeCCEEEEEECCCCceEE-EEEcCCC
Q 003336 103 SANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VVAI-CQAAQVHCFDAATLEIEY-AILTNPI 176 (828)
Q Consensus 103 ~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r-iLAV-s~~~~I~IwDl~t~~~l~-tL~t~p~ 176 (828)
..+++++|++.++..+..+.. ...|..++++ ++ +++. +.++.|.+||..+++.+. .+..+..
T Consensus 176 ------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 176 ------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred ------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 127899999999999998886 6789999997 33 4444 567899999988776665 3333311
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccC
Q 003336 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 256 (828)
Q Consensus 177 ~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd 256 (828)
. . +. .+. | ++.
T Consensus 244 ~-------------~-~~------~~~-------------~--------------~~~---------------------- 254 (466)
T COG2319 244 S-------------V-VS------SFS-------------P--------------DGS---------------------- 254 (466)
T ss_pred c-------------e-eE------eEC-------------C--------------CCC----------------------
Confidence 0 0 00 011 0 000
Q ss_pred ccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCCCCE
Q 003336 257 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSGIL 335 (828)
Q Consensus 257 ~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~-i~~f~aH~~pIsaLaFSPdG~l 335 (828)
.++.+..++.+++||+..... +..+..|..+|.++.|+|++..
T Consensus 255 ------------------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 255 ------------------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred ------------------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence 011235678999999987664 5555788999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cCCccccEEEEEEccCCCEEEEE-eCCCcEEEEecCCCC
Q 003336 336 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLG 413 (828)
Q Consensus 336 LATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpDg~~LAs~-S~DGTVhIwdl~~~g 413 (828)
+++++.|+. +++||+... ....... .++.. .|..+.|++++..++.+ ..|+.+.+|++....
T Consensus 299 ~~~~~~d~~-~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 299 LASGSSDGT-VRLWDLETG--------------KLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeCCCc-EEEEEcCCC--------------ceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999999966 999988764 1111221 23332 48899995443566666 688999999998765
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.93 E-value=3e-09 Score=120.94 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=83.0
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 295 PDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~-------~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
+-+..+|.|+||.+..+ .+-..+.+|...|+.|.|.| -..+||+||.|-+ |+|||+...
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~------------ 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANA------------ 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhh------------
Confidence 34578999999998753 46677889999999999999 5679999999987 999999886
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
....+| -||+. .|.+++|||||+.+|+.+.||+++||.-..
T Consensus 711 --~~~~~l-~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 --KLYSRL-VGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred --hhhhee-ccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 111234 46663 599999999999999999999999998655
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=9.3e-07 Score=101.37 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=63.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG--t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++. ..+..+.....+.+|+|||++|+.++.++ ..|.+||+.++ ..+ .|....
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g------------~~~---~Lt~~~- 374 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------GVQ---VLTDTF- 374 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC------------CeE---EeCCCC-
Confidence 355557766543 33333444566789999999998876543 23777888765 122 232221
Q ss_pred cccEEEEEEccCCCEEEEEeCCCc---EEEEecCCCCCceeeccCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGT---SHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGT---VhIwdl~~~gg~~~~~~H~ 422 (828)
...+.+|||||++|+.++.++. +.+++++ ++....+.+|.
T Consensus 375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~ 417 (429)
T PRK03629 375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD 417 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC
Confidence 2456889999999999998875 4445552 33345565553
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=112.17 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=90.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCC-----CCC----ccC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSS----ACD 363 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~-----~~~----~~~ 363 (828)
.++.|..+|.|.|||+.|..+-..|.||..||++||||+||++|+|+|.|.. |.+||+..+..- .+. ...
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeEEEccCccceeeec
Confidence 3566788999999999999998999999999999999999999999999965 999999887210 000 000
Q ss_pred CCCceeEE----------EEEecC-----------CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003336 364 AGTSYVHL----------YRLQRG-----------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 364 ~~~~~~~l----------~~L~RG-----------~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~ 422 (828)
+......+ ..+.-+ .-+..-.+..|.+-|++|.+|+..|.++|++.++..+...++.-+
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 00000000 111000 000000123478889999999999999999999998887776543
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.87 E-value=8.3e-07 Score=96.84 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=130.1
Q ss_pred EEEEEECCCCcEEEEEeCC----CCEEEEEEcC--CEEEE---EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCc
Q 003336 118 VVHFYSLRSQSYVHMLKFR----SPIYSVRCSS--RVVAI---CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (828)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~----s~V~sV~~S~--riLAV---s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~ 188 (828)
.|.|||+++-+.+++|.-. ..+.++.++. -+||. ...+.|++||+.+.+...++..|..
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~------------ 174 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG------------ 174 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC------------
Confidence 4999999999999999752 3466777663 47776 2357899999999999988887742
Q ss_pred ccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccc
Q 003336 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (828)
Q Consensus 189 ~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~ 268 (828)
++| -||+.. +|..+
T Consensus 175 ---~lA----alafs~---------------------------~G~ll-------------------------------- 188 (391)
T KOG2110|consen 175 ---PLA----ALAFSP---------------------------DGTLL-------------------------------- 188 (391)
T ss_pred ---cee----EEEECC---------------------------CCCEE--------------------------------
Confidence 233 244542 22222
Q ss_pred ccCCCCCCcccccCCCCCCCccCCcccccCCCC-eEEEEECCCCcEEEEeccCCC--CeEEEEEcCCCCEEEEEecCCCE
Q 003336 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG-MVIVRDIVSKNVIAQFRAHKS--PISALCFDPSGILLVTASVQGHN 345 (828)
Q Consensus 269 ~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG-~V~IwDl~s~~~i~~f~aH~~--pIsaLaFSPdG~lLATaS~DGt~ 345 (828)
++++..| .|||+++.+++.+..|+.-.. .|.+|+|+||+++|+..|..+|
T Consensus 189 --------------------------ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT- 241 (391)
T KOG2110|consen 189 --------------------------ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET- 241 (391)
T ss_pred --------------------------EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-
Confidence 1122222 589999999999999996554 5789999999999999999998
Q ss_pred EEEEeCCCCCCCC-C--Cc-cCCC------------CceeEEEEEecCCccccE------EEEEEc--cCCCEEEEEeCC
Q 003336 346 INIFKIIPGILGT-S--SA-CDAG------------TSYVHLYRLQRGLTNAVI------QDISFS--DDSNWIMISSSR 401 (828)
Q Consensus 346 I~IWdi~~~~~~~-~--~~-~~~~------------~~~~~l~~L~RG~t~a~I------~sIaFS--pDg~~LAs~S~D 401 (828)
|+||.+....... . .+ .++. +.+...+...|....+.| ..++|+ ++...+.+++.|
T Consensus 242 VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~d 321 (391)
T KOG2110|consen 242 VHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYD 321 (391)
T ss_pred EEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcC
Confidence 8999987642100 0 00 0000 011111122222211111 345566 478899999999
Q ss_pred CcEEEEecCCC-CCce-eeccC
Q 003336 402 GTSHLFAINPL-GGSV-NFQPT 421 (828)
Q Consensus 402 GTVhIwdl~~~-gg~~-~~~~H 421 (828)
|....|.+.+. ||.. .++.|
T Consensus 322 G~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 322 GHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred CeEEEEEcCCCCCceeEEEEee
Confidence 99999999884 4443 33434
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.87 E-value=6.3e-09 Score=111.57 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=85.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+.++.-|.|+|.|+.++++...+.+|...|+.|+|.|+ -+||++||.|- .||+|++.+. .++..
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--------------~Cv~V 173 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--------------VCVAV 173 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--------------eEEEE
Confidence 34557799999999999999999999999999999996 57999999995 5999999986 34444
Q ss_pred E--ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 374 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 374 L--~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
| ..||. ..|.+|.|++||.+||+++.|-++++|+|+.
T Consensus 174 fGG~egHr-deVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 174 FGGVEGHR-DEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred eccccccc-CcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 4 22332 2499999999999999999999999999984
No 171
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.2e-06 Score=100.30 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=53.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG--t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++. ..+..+...+...+|||||++||..+.++ ..|.+||+..+ ... .+..+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-------------~~~--~lt~~-- 376 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-------------GER--ILTSG-- 376 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-------------ceE--eccCC--
Confidence 578888876654 33333445567789999999998876543 34677776443 122 22222
Q ss_pred cccEEEEEEccCCCEEEEEeCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..+.+.+|||||++|+..+.+
T Consensus 377 -~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 -FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred -CCCCCCeECCCCCEEEEEEcc
Confidence 136789999999999887764
No 172
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=1.5e-06 Score=93.37 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=74.7
Q ss_pred eEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCC---CccCC-------CCcee
Q 003336 302 MVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS---SACDA-------GTSYV 369 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH--~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~---~~~~~-------~~~~~ 369 (828)
.|||||..+|+.+..|+.- ...|.||+|||++.+||.+|++|| ++||.++....+.. +..-. .++.+
T Consensus 205 LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~w 283 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEW 283 (346)
T ss_pred EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccce
Confidence 5899999999999999843 357999999999999999999999 89999987422111 11100 01122
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
-+.+++- ......-++|-.+.+-+++.+.||+-+-+.+.+.
T Consensus 284 S~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 284 SFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred eEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 2222221 1122455789888777888888999877777654
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.85 E-value=7.1e-08 Score=110.59 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=71.3
Q ss_pred CCCeEEEEECCCC--cEEEEeccCCCC--eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 299 NVGMVIVRDIVSK--NVIAQFRAHKSP--ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 299 ~dG~V~IwDl~s~--~~i~~f~aH~~p--IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.|+.|..|++.+. .+++.|.+|... -..-..+|||.+|++|+.|++ ..||.+..... --.+
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs~~e~--------------~~~~ 355 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVSSPEA--------------PPAL 355 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeecCccC--------------Chhh
Confidence 4889999999863 466666665421 122357999999999999998 78999876410 0122
Q ss_pred ecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 375 QRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
.-|++. .|..++|.| +-.-+|++|+|-+++||+|..+.+.
T Consensus 356 l~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 356 LLGHTR-EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred hhCcce-EEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 246653 489999976 3334666699999999999776554
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.85 E-value=1.3e-07 Score=100.29 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=67.0
Q ss_pred CCeEEEEECCC-CcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 300 VGMVIVRDIVS-KNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 300 dG~V~IwDl~s-~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
...|.|.|++. ..+++.++.|...|+.|+|.| +...|+||++|-. .-|||+..... ... . .--..|+.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~-~~~-~----dPilay~a--- 334 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPR-ENG-E----DPILAYTA--- 334 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccc-cCC-C----Cchhhhhc---
Confidence 35799999986 468999999999999999999 6779999999965 78999976411 000 0 11122332
Q ss_pred CccccEEEEEEcc-CCCEEEEEeCC
Q 003336 378 LTNAVIQDISFSD-DSNWIMISSSR 401 (828)
Q Consensus 378 ~t~a~I~sIaFSp-Dg~~LAs~S~D 401 (828)
.+.|..|.|++ .+.|||++...
T Consensus 335 --~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 335 --GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred --cceeeeeeecccCCCEEEEEecC
Confidence 24699999995 78899998754
No 175
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.7e-08 Score=103.31 Aligned_cols=106 Identities=18% Similarity=0.381 Sum_probs=85.6
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 294 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~pIsaLaFSP--dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
+++++.|++|+|+++.+. +.+.+|.+|.+||..++|-. -|++||++|.||+ +.||.-..+ . -
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g-~-----------w 92 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENG-R-----------W 92 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCC-c-----------h
Confidence 567789999999999864 57899999999999999976 8999999999999 669987665 1 1
Q ss_pred eEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCC
Q 003336 369 VHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.+++.. ....+.|++|+|.| -|-.||++|+||+|.|+++...|+
T Consensus 93 ~k~~e~--~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 93 TKAYEH--AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred hhhhhh--hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 222322 12234599999998 467899999999999999988754
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.77 E-value=3.3e-07 Score=97.19 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=83.5
Q ss_pred CCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 298 DNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
..+++++.||+++.+....++ ||...|..|.|+|+-+ +||||++||. |||||.+.. ...+.+|.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t-------------k~pv~el~ 255 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT-------------KFPVQELP 255 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC-------------CccccccC
Confidence 467899999999988777766 9999999999999866 7999999998 899999874 12344553
Q ss_pred cCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCce
Q 003336 376 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSV 416 (828)
Q Consensus 376 RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg~~ 416 (828)
+|. +.|+++-|.| ..++|.++++|..|-+|.........
T Consensus 256 -~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 256 -GHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred -CCc-eEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 443 5699999998 56789999999999999887654443
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1.7e-06 Score=102.53 Aligned_cols=108 Identities=20% Similarity=0.312 Sum_probs=82.2
Q ss_pred ccccCCCCeEEEEE-CC-CC--cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 294 FPDADNVGMVIVRD-IV-SK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 294 ~~s~~~dG~V~IwD-l~-s~--~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++++..+|.|.||. +. ++ .....|.=|..+|.+|+|++||.+|.||+..|- +-+|.+.++ ...
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~------------~kq 286 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETG------------KKQ 286 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeecCC------------Ccc
Confidence 34567789999994 33 11 234566778889999999999999999999985 789999886 112
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.|-+| .+.|..+.+|||+.+.+....|..||+-....-.-..++.
T Consensus 287 fLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 287 FLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred ccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 22222 3569999999999999999999999998886544444443
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.3e-08 Score=120.66 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=79.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEEcCCC-CEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCcee
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSG-ILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~--pIsaLaFSPdG-~lLATaS~DGt--~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
+++...|.+.|||++.++++-.|.-|.. .++.|+|+||. +.|++|+.|.+ +|.+||++.. + .
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---s----------s 244 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---S----------S 244 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---C----------C
Confidence 4456778999999999999988887754 47889999974 57888887754 6999998864 1 1
Q ss_pred EEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
-+..+ ++|.. -|.+++|++ |..+|+++..|+.|.+|+.++.
T Consensus 245 P~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 245 PLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred chhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 12233 45543 399999998 5599999999999999999883
No 179
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=4e-07 Score=105.38 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=76.5
Q ss_pred CCeEEEEECC--CCcEEEEeccCCCCeEEEEEcCCCC---EEEEEecCCCEEEEEeCCCCCCCCC------Cc--cCCCC
Q 003336 300 VGMVIVRDIV--SKNVIAQFRAHKSPISALCFDPSGI---LLVTASVQGHNINIFKIIPGILGTS------SA--CDAGT 366 (828)
Q Consensus 300 dG~V~IwDl~--s~~~i~~f~aH~~pIsaLaFSPdG~---lLATaS~DGt~I~IWdi~~~~~~~~------~~--~~~~~ 366 (828)
+..|.|+.-. +.+.++.+++|..-|..|+|..-|. +|||+|.|.. ||||.+.....-.+ .+ .. ..
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-IRiW~i~~~~~~~~~~~e~~~t~~~~-~~ 245 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-IRIWRIVLGDDEDSNEREDSLTTLSN-LP 245 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-EEEEEEEecCCccccccccccccccC-Cc
Confidence 3344444333 3467788999999999999987655 8999999965 99999876521000 00 00 00
Q ss_pred ceeEEE---------EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 367 SYVHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 367 ~~~~l~---------~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
....+. .+.-||.. .|+++-|+|++..|.++|.|.|+.||.-....|
T Consensus 246 ~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 001111 23346654 499999999999999999999999999877655
No 180
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.74 E-value=1.1e-07 Score=97.82 Aligned_cols=92 Identities=15% Similarity=0.355 Sum_probs=72.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D---Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+..+..|.|||++ .+.+..|. ..++..|+|||+|++||+|+.+ |. |.+||+... ..+.+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~--------------~~i~~ 140 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK--------------KKIST 140 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC--------------EEeec
Confidence 3455689999997 66777775 5688999999999999999864 44 899999864 44555
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeC------CCcEEEEecC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 410 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~------DGTVhIwdl~ 410 (828)
+.. ..+.+++|||||++|++++. |..++||++.
T Consensus 141 ~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 432 23789999999999999885 6889999984
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.74 E-value=1.5e-07 Score=103.10 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=89.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++.|.+|.|||+.+++.+-++. |..-|.+++|+.||.+|+|++.|.. |||||.+++ ..+..
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~--------------~~v~e 210 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRG--------------TVVSE 210 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCC--------------cEeee
Confidence 3456778899999999999999998 9999999999999999999999987 999999987 22222
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeC---CCcEEEEecCCCCCce---eeccCCCCCCccc
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSV---NFQPTDANFTTKH 429 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~---DGTVhIwdl~~~gg~~---~~~~H~~~~~~~~ 429 (828)
- .+|..++-..+-|=.+|.++-+|-+ ++.+-|||-.....+. .+.+.+..+-+|.
T Consensus 211 ~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 211 G-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred c-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 2 4555556667789999996655543 5789999966554443 4444444444443
No 182
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=6.6e-07 Score=98.17 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=89.8
Q ss_pred cccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 293 HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
+|++...-+.|++||...+ +|+++|.--..+|+++...|+|+++.+|...|. +..||++.+ .++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~--------------kl~ 282 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGG--------------KLL 282 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCc--------------eee
Confidence 4556666789999999875 689999988899999999999999999999998 899999876 333
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
-....|.+. .|.+|.-.|..++||+++.|+-++|||+.+.+-.
T Consensus 283 g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 GCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 343456654 4999999999999999999999999999884433
No 183
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.71 E-value=2.9e-08 Score=114.57 Aligned_cols=99 Identities=16% Similarity=0.314 Sum_probs=79.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
-.|+||...+-..+..+..|.-.|+.|+|||||++|+++|.|.+ +.+|....... . ..-+..-.-|+
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~---~--------e~~fa~~k~Ht- 618 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIK---D--------EFRFACLKAHT- 618 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccc---h--------hhhhccccccc-
Confidence 47899999998888899999999999999999999999999977 89998865410 0 00011112222
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..|++++|+||++++|++|.|.+|+||.+...
T Consensus 619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 24999999999999999999999999999764
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1e-05 Score=92.75 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=57.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG--t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++... +..+......++|||||++|+..+.++ ..|.+||+.++ ... .+..+.
T Consensus 317 ~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g------------~~~---~Lt~~~- 379 (433)
T PRK04922 317 QIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG------------SVR---TLTPGS- 379 (433)
T ss_pred eEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC------------CeE---ECCCCC-
Confidence 46666776655322 222223445689999999998776543 24889998765 112 332332
Q ss_pred cccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg 414 (828)
...+.+|||||++|+..+.+ +.-+||-+...++
T Consensus 380 --~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 380 --LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 24567999999998887764 4445555444443
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.68 E-value=1.2e-07 Score=103.96 Aligned_cols=113 Identities=12% Similarity=0.219 Sum_probs=92.3
Q ss_pred ccccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCC
Q 003336 294 FPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~-------~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~ 365 (828)
+++++.|.+|+||++..+ +++..+.+|...|.-|+|.|... .|+||+.|.+ |.||++.++
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~-v~iWnv~tg----------- 164 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT-VSIWNVGTG----------- 164 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce-EEEEeccCC-----------
Confidence 567889999999998753 57889999999999999999754 8899999976 899999987
Q ss_pred CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
.-+++|. | +..|++++|+.||.+|++++.|..|+|||..+..-...-.+|...
T Consensus 165 ---eali~l~--h-pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 165 ---EALITLD--H-PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ---ceeeecC--C-CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 4456664 2 345999999999999999999999999999875333333466654
No 186
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.1e-05 Score=92.54 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 324 ISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt--~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
....+|||||++||.++.++. .|.+||+.++ ... .+..+ ....+.+|+|||++|+.++.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g------------~~~---~lt~~---~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG------------QVT---ALTDT---TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC------------CeE---EccCC---CCccCceECCCCCEEEEEEec
Confidence 345789999999998776542 4889998765 112 22222 124678999999999988865
Q ss_pred C-cEEEEecCCCC
Q 003336 402 G-TSHLFAINPLG 413 (828)
Q Consensus 402 G-TVhIwdl~~~g 413 (828)
+ .-.||-+...+
T Consensus 392 ~g~~~l~~~~~~g 404 (427)
T PRK02889 392 GGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEECCC
Confidence 4 44455554433
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=6.3e-08 Score=109.85 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=88.5
Q ss_pred CcccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 003336 292 GHFPDADNVGMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s--------~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
+.+++++.+|.+++|.+.. .+++.+|++|.+||-|++..+.|..+.||+.||+ |+.|.+.+.... .+
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~dp----~d 381 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQDP----DD 381 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCCc----cc
Confidence 3567889999999999932 3589999999999999999999999999999998 999987643100 00
Q ss_pred CCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 364 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
...... +....-|++.+ |+.+++|.....|+++|.|||+++|.....
T Consensus 382 s~dp~v-l~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 382 SYDPSV-LSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ccCcch-hccceeccccc-eeeeeecccccceeeecCCceEEeeccCCc
Confidence 000011 12222477754 999999999999999999999999998653
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.65 E-value=6.9e-07 Score=94.95 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=81.4
Q ss_pred cccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 293 HFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~---i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
.|++.+.||.||++|++..+- +..=.....|...|++++ |-.+|||-..|...|.|-|++.. +
T Consensus 211 ~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-------------~ 277 (364)
T KOG0290|consen 211 VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-------------C 277 (364)
T ss_pred eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-------------C
Confidence 456667899999999998642 222223256889999998 67799998888888999999875 2
Q ss_pred eEEEEEecCCccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCC
Q 003336 369 VHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~~~g 413 (828)
..+.+| |+|. +.|+.|+|.|. +..|+++++|-.+-||||..-.
T Consensus 278 tpva~L-~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 278 TPVARL-RNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cceehh-hcCc-ccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 345567 4554 56999999995 4689999999999999998653
No 189
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=2.3e-07 Score=102.99 Aligned_cols=118 Identities=14% Similarity=0.262 Sum_probs=95.4
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
..+++++.|.+|++||+.++++..++..|..+|.+|+|.| .+..|++||.||+ ++++|.+.. ..+ ..
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~--~~s---------~~ 324 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDP--SNS---------GK 324 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCc--ccc---------Cc
Confidence 4567888999999999999999999999999999999999 5889999999998 899999852 111 12
Q ss_pred EEEEecCCccccEEEEEEccCCCE-EEEEeCCCcEEEEecCCCCCc-eeeccCCCCCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGS-VNFQPTDANFT 426 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~-LAs~S~DGTVhIwdl~~~gg~-~~~~~H~~~~~ 426 (828)
-+++. +.|-.++|.|.+.. +.++++||+++=||+...+.. -+++.|...+.
T Consensus 325 ~wk~~-----g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 325 EWKFD-----GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred eEEec-----cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 34542 45999999997654 566779999999999887544 37788877555
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.1e-07 Score=101.48 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
...|++|+.|+||+++|-|+.||. |-|++...- +.++-.++-|-. .|+++.|+||.+++++.|.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l--------------q~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL--------------QRLQYVKEAHLG-FVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCc-EEEEEecee--------------eeeEeehhhhee-eeeeEEEcCCcCccccccc
Confidence 357999999999999999999997 899998763 556666665543 5999999999999999999
Q ss_pred CCcEEEEecCC
Q 003336 401 RGTSHLFAINP 411 (828)
Q Consensus 401 DGTVhIwdl~~ 411 (828)
|.+++|..|.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 99999999864
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.60 E-value=4e-07 Score=104.06 Aligned_cols=93 Identities=13% Similarity=0.236 Sum_probs=71.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
+.+..|-+|+|||+.+.+.-..|.+|+..|-.++|||||+++||-..||+ |+||.-+... ..+|+-
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e-------------~pv~Eg 759 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE-------------QPVYEG 759 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC-------------CccccC
Confidence 45567889999999999999999999999999999999999999999998 8999877641 122211
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.|.....--.|.|.-||++|++.+.|.
T Consensus 760 -~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 760 -KGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred -CCCccCcceeEEEEecCcEEEEecccc
Confidence 111111123467888999998887663
No 192
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.59 E-value=8.8e-07 Score=99.31 Aligned_cols=207 Identities=14% Similarity=0.250 Sum_probs=137.4
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+-++..|..+-++|||+.. .-+.+.+..|...|.++.+--+ | ..||-+..+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~--------D------eyiAsvs~g-------------- 142 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNT--------D------EYIASVSDG-------------- 142 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCC--------c------ceeEEeccC--------------
Confidence 5566677777799999984 5567777788888888876421 2 256666543
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CCE-EEE-EeCCEEEEEECCCCceEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRV-VAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S--~ri-LAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+-|.|-.++|++.-.+|..++ .|+-++++ +|. |.+ +.++.|.+||...+..++..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 447888999988888888753 45567775 444 444 56689999999877655443
Q ss_pred E-cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 172 L-TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 172 ~-t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
. .|.-| + +-+.|+. ++..
T Consensus 204 ~~~HsAP--~-----------------~gicfsp--------------------------sne~---------------- 222 (673)
T KOG4378|consen 204 SEAHSAP--C-----------------RGICFSP--------------------------SNEA---------------- 222 (673)
T ss_pred hhhccCC--c-----------------CcceecC--------------------------Cccc----------------
Confidence 2 22111 0 0011110 0100
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
.+++-+.|..|.+||+.+++....+. ...|.++|+|+
T Consensus 223 ------------------------------------------l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 223 ------------------------------------------LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFS 259 (673)
T ss_pred ------------------------------------------eEEEecccceEEEeecccccccceee-ecCCcceeeec
Confidence 12344578899999999887766665 34699999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 392 (828)
++|.+|+.|+..|. |.-||++... ..+..+ ..+. +.|++|+|-|--
T Consensus 260 ~~G~~L~aG~s~G~-~i~YD~R~~k-------------~Pv~v~-sah~-~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGE-LIAYDMRSTK-------------APVAVR-SAHD-ASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCce-EEEEecccCC-------------CCceEe-eecc-cceeEEEeeecc
Confidence 99999999999998 6789998641 112222 2233 349999997653
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=4.9e-06 Score=98.77 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=75.0
Q ss_pred CCCeEEEEECCCCcEE-EEe---ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 299 NVGMVIVRDIVSKNVI-AQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i-~~f---~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
....+.+|+..++... ... .-|+.+++|.+|||.++++|+|..||+ |.||.-... .+ .......|
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~-~~---------~~~t~t~l 247 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGS-SD---------DSETCTLL 247 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEecccc-cc---------ccccceEE
Confidence 3456788888875411 111 257778999999999999999999999 899964331 00 00111244
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
+..+ +.|.+++||+||.+|.+|+..|..-+|.+.+.+
T Consensus 248 HWH~--~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 248 HWHH--DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred Eecc--cccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 4443 469999999999999999999999999999865
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=2.1e-06 Score=103.11 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=75.8
Q ss_pred cccccCCCCeEEEEECCCCc--EEEEeccCC--C-CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 293 HFPDADNVGMVIVRDIVSKN--VIAQFRAHK--S-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~--~-pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
.+++++.+|.|++||++... ..-++..|. + ..++|..++...++|+|+. + .|+||++.-...+.
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~G~~l~~--------- 1339 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLSGEQLNI--------- 1339 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecChhhhcc---------
Confidence 45667889999999999742 223344554 4 5999999999999999998 4 49999986430000
Q ss_pred eeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+-+..--|.....+.+++|.|.--.+|+|+.|.+|-||...+.
T Consensus 1340 -~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00000001111223789999999999999999999999987664
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=3.2e-06 Score=96.82 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=60.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc
Q 003336 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (828)
Q Consensus 303 V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a 381 (828)
|.+||+.+++. ..+..|...+.+.+|+|||+.|+.++ .+|. .+||++... . ..... + +.. .
T Consensus 274 Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~-~---------~~~~~---l--~~~-~ 335 (429)
T PRK01742 274 IYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSAS-G---------GGASL---V--GGR-G 335 (429)
T ss_pred EEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECC-C---------CCeEE---e--cCC-C
Confidence 55667776654 55666777788999999999877666 4566 789987643 0 01111 1 111 1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..++|||||++|+.++.++. .+||+...
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g 363 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNV-VKQDLTSG 363 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCE-EEEECCCC
Confidence 45789999999999888664 45898764
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.1e-07 Score=100.45 Aligned_cols=120 Identities=19% Similarity=0.320 Sum_probs=88.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCC--CC--Cc-------
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG--TS--SA------- 361 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~--~~--~~------- 361 (828)
.+++++.||++|||+..+...+..+.+|...|.+|.|||||++||+-+.|+ .+||++.++... .+ +.
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~--~~VW~~~~g~~~a~~t~~~k~~~~~~c 235 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS--ARVWSVNTGAALARKTPFSKDEMFSSC 235 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc--eEEEEeccCchhhhcCCcccchhhhhc
Confidence 467788999999999999999999999999999999999999999999993 699999987210 00 00
Q ss_pred -c--CCCCceeEEE--------------EEecC---------Cc-cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 362 -C--DAGTSYVHLY--------------RLQRG---------LT-NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 362 -~--~~~~~~~~l~--------------~L~RG---------~t-~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+ +..+....+. .+.++ .. ...|.+++.|+||+++|.|+.||.|-|++...-..
T Consensus 236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 0 0000011111 11111 00 11389999999999999999999999999987544
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=6e-06 Score=99.39 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=79.5
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEEcCCCCE-EEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSP--ISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~p--IsaLaFSPdG~l-LATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
.++.|-.||.|++||.+.. ..+...+.|... |..+.|.+.|-- |++||.+|. |++||++....-
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e--------- 1292 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKE--------- 1292 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccc---------
Confidence 3566778999999998753 467888999877 999999998876 999999997 999999873100
Q ss_pred ceeEEEEEec--CCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 367 SYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 367 ~~~~l~~L~R--G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.... ...++ |. ..+++...++...+|+|+. +.|+||++.
T Consensus 1293 ~~~~-iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1293 TFLT-IVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccce-eeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 0001 11112 31 3678999999999999999 999999995
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.49 E-value=1.4e-07 Score=106.57 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=69.2
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC
Q 003336 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 391 (828)
.++..+.--..+|...+|||||++||+-|.||. +||||..+. +|.-+-+.. -.-..|+|||||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~---------------eLlg~mkSY-FGGLLCvcWSPD 343 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQ---------------ELLGVMKSY-FGGLLCVCWSPD 343 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHH---------------HHHHHHHhh-ccceEEEEEcCC
Confidence 566655545568999999999999999999998 899998763 221111111 123899999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 392 SNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 392 g~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
|+||++|+.|.-|.||.+... .+..++|
T Consensus 344 GKyIvtGGEDDLVtVwSf~er--RVVARGq 371 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEER--RVVARGQ 371 (636)
T ss_pred ccEEEecCCcceEEEEEeccc--eEEEecc
Confidence 999999999999999999763 4444443
No 199
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.48 E-value=6.2e-05 Score=84.96 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=56.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt--~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++. ..+..+...+..++|+|||++|+.++.++. .|.+||+..+ ... .+..+
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------------~~~---~l~~~-- 364 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------------GER---VLTDT-- 364 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------------CeE---EccCC--
Confidence 577788877654 334445556778899999999998887651 3677777654 111 22111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEE
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
......+|+|||++|+.++.++...
T Consensus 365 -~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 365 -GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred -CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1234678999999999988876443
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.48 E-value=1.1e-06 Score=99.36 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=55.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
+++.-+.||.+||+|..+.+.+..++..-+...|++|||||+++|||+.|- .+.||.+...
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er 364 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER 364 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence 566778999999999999999999988889999999999999999999996 5999998764
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.47 E-value=3.1e-06 Score=95.80 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=64.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++.|-..+|||.. |+++.+-.+|..||++++|+|| +++|.+|.. + .| +..
T Consensus 201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~~-------------------- 253 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FSS-------------------- 253 (737)
T ss_pred eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ecC--------------------
Confidence 4567788899999975 6677778899999999999999 888887753 2 33 111
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEE-Eec
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL-FAI 409 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI-wdl 409 (828)
.....|..++||+||..++.|+..|-+.+ +.+
T Consensus 254 ----p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 254 ----PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred ----CCccceEEEEEcCCCceeeccccCceEEEeeee
Confidence 11124899999999999999999986533 444
No 202
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.47 E-value=0.00043 Score=77.66 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCCeEEEEECCC-----CcEEEEecc-------CCCCeEEEEEcCCCCEEEEEec---------CCCEEEEEeCCCCCCC
Q 003336 299 NVGMVIVRDIVS-----KNVIAQFRA-------HKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILG 357 (828)
Q Consensus 299 ~dG~V~IwDl~s-----~~~i~~f~a-------H~~pIsaLaFSPdG~lLATaS~---------DGt~I~IWdi~~~~~~ 357 (828)
..|.|.+.|+.. .+.+..+.. ....+.-++|+|+|+.|..+.. .++.|.++|..++
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--- 289 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--- 289 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---
Confidence 349999999543 344444332 1233445999999998887542 1245888898775
Q ss_pred CCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCceee
Q 003336 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 358 ~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S-~DGTVhIwdl~~~gg~~~~ 418 (828)
+.+.++.-| ..+..|+||||++ +|.+.+ .+++|+|+|+.+.....++
T Consensus 290 -----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 -----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 455555434 3589999999999 777777 6899999999876444444
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=1.7e-05 Score=91.02 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=61.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.++|+..+ ..+.+ ++. +.
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g------------~~~~l-t~~-g~ 336 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG------------SAERL-TFQ-GN 336 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEEe-ecC-CC
Confidence 3689999988764 4566666666788999999999887754 43 2444454433 12222 222 21
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC---cEEEEecCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DG---TVhIwdl~~ 411 (828)
....++|||||++|+..+.++ .|.+|++..
T Consensus 337 ---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 337 ---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred ---CccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 244689999999999876543 578888754
No 204
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.44 E-value=0.00053 Score=76.47 Aligned_cols=85 Identities=18% Similarity=0.380 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-CCccccEEEEEEccCCCEEEEEe-C
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDISFSDDSNWIMISS-S 400 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R-G~t~a~I~sIaFSpDg~~LAs~S-~ 400 (828)
....|+++|||++|..+......|-+|++... .+....+..+.- |. .-.+++|+|||+||+++. .
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~----------~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA----------TGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT----------TTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC----------CCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecC
Confidence 57889999999999888877677999999542 112334333332 22 268999999999999988 5
Q ss_pred CCcEEEEecCCCCCceeecc
Q 003336 401 RGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 401 DGTVhIwdl~~~gg~~~~~~ 420 (828)
+++|.+|++++..|......
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 67999999987777665543
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.43 E-value=5.9e-05 Score=83.51 Aligned_cols=93 Identities=23% Similarity=0.347 Sum_probs=64.5
Q ss_pred eEEEEECC-CCcEEEEeccCCCCeEEEEEcC------------------CCCEEEEEecCCCEEEEEeCCCCCCCCCCcc
Q 003336 302 MVIVRDIV-SKNVIAQFRAHKSPISALCFDP------------------SGILLVTASVQGHNINIFKIIPGILGTSSAC 362 (828)
Q Consensus 302 ~V~IwDl~-s~~~i~~f~aH~~pIsaLaFSP------------------dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~ 362 (828)
...+++-. ..++++.+..-..++.++.|+| -+..+|.|..+ .+.|||..+.
T Consensus 262 ~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~--svyvydtq~~-------- 331 (434)
T KOG1009|consen 262 TSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN--SVYVYDTQTL-------- 331 (434)
T ss_pred eeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc--eEEEeccccc--------
Confidence 34455433 2467777777777777766654 34456777776 4789998764
Q ss_pred CCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 363 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 363 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
..++.+. +.+-+.|+|+|||+||..|+++|.||-+-+--+++
T Consensus 332 ------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 332 ------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 2333332 33445699999999999999999999888766655
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.42 E-value=6.8e-06 Score=84.52 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec------CCCEEEEEeCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV------QGHNINIFKII 352 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~------DGt~I~IWdi~ 352 (828)
.|.|.+||+.+.+.+.++... .++.++|||||++|+|+.. |.. ++||+..
T Consensus 124 ~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~~ 179 (194)
T PF08662_consen 124 NGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSFQ 179 (194)
T ss_pred CcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEec
Confidence 478999999999998887643 4789999999999999975 443 8899874
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=82.87 Aligned_cols=106 Identities=12% Similarity=0.244 Sum_probs=76.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE----
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY---- 372 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~---- 372 (828)
++.|+.+.-||+++|+....|++|+..|.+|.--.....+.||+.||+ +||||.++.. +....
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt~k------------~v~~ie~yk 198 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKTQK------------HVSMIEPYK 198 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccccc------------eeEEecccc
Confidence 457899999999999999999999999999998444445889999999 8999999861 11111
Q ss_pred --EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 373 --RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 373 --~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
.+.|-+....|-+ ..-|..||++|... .+.||.+....+...|
T Consensus 199 ~~~~lRp~~g~wiga--la~~edWlvCGgGp-~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGA--LAVNEDWLVCGGGP-KLSLWHLRSSESTCVF 243 (325)
T ss_pred ChhhcCcccCceeEE--EeccCceEEecCCC-ceeEEeccCCCceEEE
Confidence 1223333233444 44556699887654 6889999876554433
No 208
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=5.4e-07 Score=67.66 Aligned_cols=39 Identities=28% Similarity=0.653 Sum_probs=36.6
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 311 ~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
++++.+|++|.++|.+|+|+|++.+|||++.||+ |+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 3678999999999999999999999999999997 89997
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=8.2e-05 Score=85.39 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=60.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.+||+..+ ..+.+. .+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------------~~~~lt---~~- 332 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------------NPRRIS---FG- 332 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------------CeEEee---cC-
Confidence 3588889988765 4566666667789999999999887753 32 3666676543 122222 11
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC---cEEEEec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAI 409 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DG---TVhIwdl 409 (828)
...+...+|||||++|+..+.++ .+.+|++
T Consensus 333 -~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 333 -GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred -CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 12256688999999999887543 4555665
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=5.1e-05 Score=87.20 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=60.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a 381 (828)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... . +....+ ... + .
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~---------g~~~~l-t~~-~---~ 331 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-G---------GAPQRI-TWE-G---S 331 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-C---------CCeEEe-ecC-C---C
Confidence 5889999887664 444445567889999999999887765433566654321 0 012222 211 1 1
Q ss_pred cEEEEEEccCCCEEEEEeCC-C--cEEEEecCC
Q 003336 382 VIQDISFSDDSNWIMISSSR-G--TSHLFAINP 411 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~D-G--TVhIwdl~~ 411 (828)
...+.+|||||++|+..+.+ + .+.+||+..
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 25678999999999987654 3 356667654
No 211
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.0002 Score=81.81 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-G-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++.... ..........+|+|||+.|+..+.+ | ..|.+||+.++ ..+. +..+.
T Consensus 312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg------------~~~~---lt~~~- 374 (430)
T PRK00178 312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG------------SVRI---LTDTS- 374 (430)
T ss_pred eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC------------CEEE---ccCCC-
Confidence 567777776654322 1111223457899999999887654 3 23677787664 1222 21111
Q ss_pred cccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg 414 (828)
.....+|||||++|+.++.+ |.-+||-+...+.
T Consensus 375 --~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 375 --LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 12356899999999987764 4455555544433
No 212
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=2.5e-06 Score=92.39 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=76.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEe--ccCC-CCeEEEEEcCCCCEEEEEecCC---CEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 296 DADNVGMVIVRDIVSKNVIAQF--RAHK-SPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f--~aH~-~pIsaLaFSPdG~lLATaS~DG---t~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++..||+|++||+++...++.+ .+|. .+..|++.+-.+.+++++...- -.+.+||++... .
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------q 155 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------Q 155 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-------------c
Confidence 4567999999999987655554 4666 4677777777899999986532 247899998751 1
Q ss_pred EEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.+..+...| ...|++|+|.| |-..|++||.||-|-|||+.....
T Consensus 156 ~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 156 LLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred hhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 122222222 24599999999 778999999999999999986533
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=6.8e-05 Score=86.02 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=60.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
.|.++|+.++. +..+..|...+...+|+|||+.|+..+.. |. ..||.+... .+..+.+ .+. +.
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~----------~g~~~~l-t~~-g~-- 328 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPAS----------GGAAQRV-TFT-GS-- 328 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECC----------CCceEEE-ecC-CC--
Confidence 35555665554 45565566556778999999998877764 44 678876432 0012222 222 21
Q ss_pred ccEEEEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 003336 381 AVIQDISFSDDSNWIMISSSRG---TSHLFAINPL 412 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DG---TVhIwdl~~~ 412 (828)
.....+|||||++||..+.++ .|.+||+...
T Consensus 329 -~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 329 -YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred -CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 134678999999999888765 5889998653
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.34 E-value=7.1e-06 Score=86.48 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
.+++++.||.||||..++.++++.++-|...|.+|+|+||..+||.||.|++ |-+|++
T Consensus 265 IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 3678899999999999999999999999999999999999999999999998 899986
No 215
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=7.1e-06 Score=88.00 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=83.6
Q ss_pred cccccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~----~~i~~f~aH~~pIsaLaFSP--dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
..++.+.|++|+|||..+. .+....++|.+.|..|.|-+ =|+.+|++|.|++ +.||.-....... .+.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~~~~~-----~~~ 100 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEKSEEA-----HGR 100 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccccccc-----ccc
Confidence 3567788999999997543 57888999999999999976 3999999999998 8999764321000 000
Q ss_pred ceeEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
.-.+..+|.- ....|++|+|+| -|-.||+++.||+++||+.-.....
T Consensus 101 ~Wv~~ttl~D--srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 101 RWVRRTTLVD--SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred eeEEEEEeec--CCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 1122223321 123499999998 6889999999999999998654443
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.31 E-value=1.5e-06 Score=99.89 Aligned_cols=143 Identities=14% Similarity=0.251 Sum_probs=107.3
Q ss_pred CEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCcc
Q 003336 138 PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRV 215 (828)
Q Consensus 138 ~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grv 215 (828)
.|++|+|- +.-|+++.+.++++||...+..+++|.+|.+.. ..+||+-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtV-------------------ycVAys~----------- 63 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTV-------------------YCVAYAK----------- 63 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceE-------------------EEEEEcc-----------
Confidence 78889995 667888889999999999999999999986421 1245652
Q ss_pred CCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCccc
Q 003336 216 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 295 (828)
Q Consensus 216 sp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~ 295 (828)
+|+ .|+
T Consensus 64 ----------------dGk----------------------------------------------------------rFA 69 (1081)
T KOG1538|consen 64 ----------------DGK----------------------------------------------------------RFA 69 (1081)
T ss_pred ----------------CCc----------------------------------------------------------eec
Confidence 111 245
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
+++.|.+|.||.-.-. ..++ .|...|.|+.|+|-...|||+|-.. +-+|..... .+.+ +
T Consensus 70 SG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK------------~V~K-~-- 129 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK------------SVSK-H-- 129 (1081)
T ss_pred cCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhh------------hHHh-h--
Confidence 5677889999975432 3334 7999999999999999999999763 678976542 1111 1
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
| ..+.|.+++|..||++||.|-.+|||.|-
T Consensus 130 -k--ss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 130 -K--SSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred -h--hheeEEEeeecCCCcEEEEeccCceEEee
Confidence 1 23469999999999999999999999986
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.28 E-value=5.5e-06 Score=97.64 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=80.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
++-.+-.+.+|.+.++..++.+.+|..++..|.|.| +-+...+|+.||. +.|||+-.+ ...+.|.
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~eg------------~pik~y~- 435 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWEG------------IPIKHYF- 435 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEeeecccC------------Ccceeee-
Confidence 345566788999999999999999999999999999 5666778999998 579999876 2234444
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.|+ ..+.+.+||+||+.++..-+-|-+.|+-...
T Consensus 436 -~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 436 -IGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred -ccc--ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 342 4588999999999999998889888876543
No 218
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00053 Score=79.38 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=35.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--CC--EEEEEECCCCce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AA--QVHCFDAATLEI 167 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~--~~--~I~IwDl~t~~~ 167 (828)
..|.+||+.+++......++....+.+|+ ++.|+++. ++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 46999999998864444455555667786 56666532 33 599999988763
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=7e-05 Score=81.97 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+..|+|||..++..+....---+.++-|.|||||.+|..|.-|+. ++||+.... + ...-+.+-.|
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--w----------t~erw~lgsg- 281 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--W----------TKERWILGSG- 281 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--c----------eecceeccCC-
Confidence 3457999999998776655444578999999999999999999987 899965432 0 0111233222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.|+..+|+|+|++|..++.. .-.||.+.-.+....+.
T Consensus 282 ---rvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 282 ---RVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFL 318 (445)
T ss_pred ---ceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCcccc
Confidence 59999999999999887654 55688886655444443
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.23 E-value=0.00035 Score=78.99 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=112.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE-EEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~-sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
+.|.+.|..|++.+.++.....+. .+.++ ++++-| ..++.|.++|+.+++.+.++..... |
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------------~ 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------------P 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------------c
Confidence 789999999999999999766554 46666 466655 5678999999999999988865321 1
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+-+|++. +|+.+ +
T Consensus 81 -----~~i~~s~---------------------------DG~~~-----------~------------------------ 93 (369)
T PF02239_consen 81 -----RGIAVSP---------------------------DGKYV-----------Y------------------------ 93 (369)
T ss_dssp -----EEEEE-----------------------------TTTEE-----------E------------------------
T ss_pred -----ceEEEcC---------------------------CCCEE-----------E------------------------
Confidence 2233321 22221 0
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEEcCCCCEEEEEecCCCE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-------KSPISALCFDPSGILLVTASVQGHN 345 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH-------~~pIsaLaFSPdG~lLATaS~DGt~ 345 (828)
++...++.|.|+|..+.++++++... ...+.+|..+|....++.+-.|...
T Consensus 94 ----------------------v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 94 ----------------------VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp ----------------------EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred ----------------------EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 01123568999999999999988743 3468899999999988888777543
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEE-EeCCCcEEEEecCCCCCc
Q 003336 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI-SSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 346 I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs-~S~DGTVhIwdl~~~gg~ 415 (828)
|.+-|.... .......+..+. ...+..|+||++|+++ ...+..+-++|..+....
T Consensus 152 I~vVdy~d~------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 152 IWVVDYSDP------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEETTTS------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEeccc------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEE
Confidence 555565442 112223333332 3679999999998766 456779999998875333
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=2.2e-06 Score=97.08 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=70.8
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc--CC
Q 003336 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DS 392 (828)
Q Consensus 315 ~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg 392 (828)
+.+.+|++-|.||.|+.||.+||+||+|-+ +.|||.... +.++.++.||+ +.|.++.|=| ..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~--------------KllhsI~TgHt-aNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEY--------------KLLHSISTGHT-ANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcce-EEeecchhc--------------ceeeeeecccc-cceeEEeeeccCCC
Confidence 568899999999999999999999999976 789998753 45566777887 5699999988 56
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 003336 393 NWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 393 ~~LAs~S~DGTVhIwdl~~ 411 (828)
+.|++|..|..|||||+..
T Consensus 108 riv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred eEEEeccCcceEEEEeccc
Confidence 7899999999999999985
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.22 E-value=4e-07 Score=106.87 Aligned_cols=96 Identities=22% Similarity=0.372 Sum_probs=84.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+.++.+|-.|+||...+..+++..++|.+.|+.++.+....++|+||.|. +|+||.+..+ .. ..
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~-vIrvWrl~~~--------------~p-vs 268 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDK-VIRVWRLPDG--------------AP-VS 268 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCc-eEEEEecCCC--------------ch-HH
Confidence 34678899999999999999999999999999999999999999999995 6999999876 12 23
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+-||++.+ |+.|+|||-- +++.|||+++||..
T Consensus 269 vLrghtga-vtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 269 VLRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence 44798865 9999999954 88999999999986
No 223
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00064 Score=78.27 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=56.0
Q ss_pred EEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 303 VIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 303 V~IwDl~s-~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-G-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
|.++++.. +.....+..+...+...+|||||+.||..+.+ | ..|.+||+..+ ..+ .+..+
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g------------~~~---~Lt~~-- 369 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG------------RDY---QLTTS-- 369 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC------------CeE---EccCC--
Confidence 44444432 22334444455567788999999999876654 2 34888998765 122 22222
Q ss_pred cccEEEEEEccCCCEEEEEeC-CC--cEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMISSS-RG--TSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~-DG--TVhIwdl~~ 411 (828)
...+.+.+|+|||++|+..+. ++ .+.+|++..
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 123678999999999886544 34 455555543
No 224
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.3e-05 Score=91.58 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=53.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCC
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~ 353 (828)
++..+++|+++|..+++++....+|...+++++|.|+|-+|++++.||. +++|.+..
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~ 562 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDV 562 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccc
Confidence 4567899999999999999999999999999999999999999999998 89998854
No 225
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.18 E-value=5.2e-05 Score=89.25 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=74.7
Q ss_pred cccccCCCCeEEEEECC---CC-----cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCC
Q 003336 293 HFPDADNVGMVIVRDIV---SK-----NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~---s~-----~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~ 364 (828)
+|+-+...|.|.--+-. .. +.+.++..|.++|.++.|+|=+..++.++.|.+ ++||.-...
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~---------- 430 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVI---------- 430 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCC----------
Confidence 46667788888773322 11 345678889999999999998776666666877 899987632
Q ss_pred CCceeEEEEEecCCccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCC
Q 003336 365 GTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 365 ~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~~~ 412 (828)
...++.+.+.. ..|.+++|||- ...||++..||++.||||...
T Consensus 431 ---~~Pl~~~~~~~--~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 431 ---ASPLLSLDSSP--DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ---CCcchhhhhcc--ceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 12344444432 33999999995 467888888999999999764
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.15 E-value=2.1e-05 Score=88.76 Aligned_cols=106 Identities=21% Similarity=0.355 Sum_probs=78.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
-..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.||. |.++|+.+. +.+.+++-
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~--------------~~v~~i~~ 76 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATG--------------KVVATIKV 76 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSS--------------SEEEEEE-
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcc--------------cEEEEEec
Confidence 346789999999999999999976555566889999999999999997 899999886 45566665
Q ss_pred CCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceeecc
Q 003336 377 GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg~~~~~~ 420 (828)
|.. -.++++|+||++++++. ..+++.|+|..+......+..
T Consensus 77 G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 77 GGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred CCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 543 57899999999999876 689999999988655544443
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.13 E-value=0.0003 Score=79.44 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=61.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-C-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+.++ . .|.++|+..+ ....+ .. .+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------------~~~~l-~~-~~- 321 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------------EVRRL-TF-RG- 321 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CC-
Confidence 3688889887754 44455555566789999999888776543 2 3555565543 11221 11 11
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC---cEEEEecCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DG---TVhIwdl~~ 411 (828)
..+..++|||||++|+.++.++ .|.+||+..
T Consensus 322 --~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 322 --GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred --CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 2366789999999999998876 667777654
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=0.00019 Score=82.39 Aligned_cols=192 Identities=16% Similarity=0.238 Sum_probs=128.1
Q ss_pred CEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEEe-CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~-s~V~sV~~S--~riLAVs~-~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
..|.-.+|..|..+..|+.. ..+..|..| ..+||++. ++.|.+||.++-....+|.....+...|+. +.
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~-------~~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG-------DA 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc-------cc
Confidence 45667799999999888875 588888887 56788754 889999999988776666442221111110 00
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+.++.-|+|..
T Consensus 228 -~~svTal~F~d-------------------------------------------------------------------- 238 (703)
T KOG2321|consen 228 -APSVTALKFRD-------------------------------------------------------------------- 238 (703)
T ss_pred -cCcceEEEecC--------------------------------------------------------------------
Confidence 00000011110
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEEcCCCC--EEEEEecCCCEEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGI--LLVTASVQGHNINI 348 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~--~pIsaLaFSPdG~--lLATaS~DGt~I~I 348 (828)
+|. +++.+...|.|.|||+.+.+++.. +.|. .||..|.|-+.++ .|+| .|.++++|
T Consensus 239 --------------~gL---~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~ki 298 (703)
T KOG2321|consen 239 --------------DGL---HVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKI 298 (703)
T ss_pred --------------Cce---eEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEe--cchHHhhh
Confidence 010 223355679999999999988643 4454 6899999988644 4555 55667999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
||-.++. ....+ .....|.++||=|++-++.++-..+.+|.|=|..-|..+.|...
T Consensus 299 Wd~~~Gk--------------~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSf 354 (703)
T KOG2321|consen 299 WDECTGK--------------PMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSF 354 (703)
T ss_pred cccccCC--------------ceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhH
Confidence 9987761 11111 12245999999999999999999999999999888777665543
No 229
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=4.7e-05 Score=79.67 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=60.3
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.|++|-.+|+..-+.+|+.|+. |+-||+.++ .+.+..|||+.. |.+++--.-...+.+|+.||
T Consensus 116 eINam~ldP~enSi~~AgGD~~-~y~~dlE~G---------------~i~r~~rGHtDY-vH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGV-IYQVDLEDG---------------RIQREYRGHTDY-VHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred ccceeEeccCCCcEEEecCCeE-EEEEEecCC---------------EEEEEEcCCcce-eeeeeecccCcceeecCCCc
Confidence 4777888877666666667765 778888776 344555898865 88888856566788999999
Q ss_pred cEEEEecCCCCCceeec
Q 003336 403 TSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 403 TVhIwdl~~~gg~~~~~ 419 (828)
|++|||..+......+.
T Consensus 179 tvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cEEEEeccccceeEEec
Confidence 99999999876655554
No 230
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.98 E-value=0.00035 Score=75.70 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=67.7
Q ss_pred cCCCCeEEEEECCC-CcEEEEeccCCC-CeEEEEE--cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 297 ADNVGMVIVRDIVS-KNVIAQFRAHKS-PISALCF--DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 297 ~~~dG~V~IwDl~s-~~~i~~f~aH~~-pIsaLaF--SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+..+-.|-.||++. +.++..+..|.. .=..|-| +|+|+.||+|+.||- |++||+... +. -.+.+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~--gn---------~~sv~ 336 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDL--GN---------EVSVT 336 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCC--CC---------ccccc
Confidence 34566899999985 567888888876 3344555 689999999999997 899999873 11 12222
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
-. ..-.++.+++.|-=.++|++|.. ++|...+
T Consensus 337 ~~----~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 337 GN----YSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred cc----ccccccceecCcccceeeeccCc---eeecCCC
Confidence 22 12238889999998888888765 4566544
No 231
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.00089 Score=77.52 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=59.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.++|+.+++. ..+..|...+...+|+|||+.|+..+.. |. .|.++|+..+ ....+ ++ .+.
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------------~~~~L-t~-~g~- 350 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------------KVSRL-TF-EGE- 350 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEE-ec-CCC-
Confidence 578889887764 4455565566788999999988876653 33 2444455443 22222 22 222
Q ss_pred cccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG 414 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~-DGTVhIwdl~~~gg 414 (828)
.....+|||||++|+..+. ++..+||-+...++
T Consensus 351 --~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 351 --QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred --CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1345799999999988765 45667766554333
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.011 Score=68.21 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=37.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeC----CEEEEEECCCCc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFDAATLE 166 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~----~~I~IwDl~t~~ 166 (828)
..|.++|+.+|+......++..+....++ ++.|++... .+|+++|+.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 36999999999876665677767677786 566665433 479999998876
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0017 Score=74.25 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++|+..+ ....+ .+ .+.
T Consensus 268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------------~~~~l-t~-~~~- 331 (430)
T PRK00178 268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------------RAERV-TF-VGN- 331 (430)
T ss_pred eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CCC-
Confidence 688889988765 3455555566778999999988776653 33 3555566543 22222 22 121
Q ss_pred cccEEEEEEccCCCEEEEEeCC-C--cEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSR-G--TSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~D-G--TVhIwdl~~ 411 (828)
.....+|||||++|+..+.+ + .+.+||+..
T Consensus 332 --~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 332 --YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred --CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 13457899999999988754 3 355666654
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00056 Score=75.74 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=62.5
Q ss_pred cCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 297 ADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
++.-|.+..+|+..++.+.. |++-++.|++|-.+|.+.+||+++-|.. +||||+.+. ..+++..
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktr--------------kll~kvY 329 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTR--------------KLLHKVY 329 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccc--------------hhhhhhh
Confidence 45567899999999988777 8899999999999999999999999965 899999874 2233332
Q ss_pred cCCccccEEEEEEccCCCEE
Q 003336 376 RGLTNAVIQDISFSDDSNWI 395 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~L 395 (828)
..+.+++|-|.++-++.
T Consensus 330 ---vKs~lt~il~~~~~n~e 346 (412)
T KOG3881|consen 330 ---VKSRLTFILLRDDVNIE 346 (412)
T ss_pred ---hhccccEEEecCCcccc
Confidence 12346777777765443
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.86 E-value=5e-05 Score=91.84 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=76.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+..-|.|.+|+....+.-..+.+|.+.|-++.|+-||+++||.|+|-+ ||+|++.+..... -.. -
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~-------------~~~-f 215 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLG-------------CTG-F 215 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccC-------------ccc-c
Confidence 345578999998744333368899999999999999999999999976 9999998862110 011 2
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
||+ +.|+.++|.|. .+++++.|-|+++|+.+
T Consensus 216 gHs-aRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 216 GHS-ARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccc-ceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 454 67999999999 99999999999999543
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.77 E-value=0.05 Score=60.73 Aligned_cols=108 Identities=19% Similarity=0.382 Sum_probs=67.7
Q ss_pred CeEEEEECCCCc--E--EEEeccC-CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 301 GMVIVRDIVSKN--V--IAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 301 G~V~IwDl~s~~--~--i~~f~aH-~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
..|.+|++.... . ...+... ...-..|+|+|||+++.........|.+|++... . +....+..+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~---------g~~~~~~~~~ 235 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-D---------GSLTEIQTIS 235 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-T---------TEEEEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-C---------CceeEEEEee
Confidence 368888876543 2 2333322 2346789999999998888777777999998732 1 1222322221
Q ss_pred ---cCCccc-cEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceee
Q 003336 376 ---RGLTNA-VIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 376 ---RG~t~a-~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg~~~~ 418 (828)
.+.... .-..|++||||++|.++. ..++|.+|++++..+...+
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 222211 367899999999988876 4679999999765554443
No 237
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.75 E-value=0.0015 Score=76.05 Aligned_cols=260 Identities=14% Similarity=0.201 Sum_probs=146.3
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+.+.-|+++.++.+-|||+++ |...+.+..|...|.|+++.-++ ..| ++++
T Consensus 22 PDGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~dG-------krF---------ASG~------------ 72 (1081)
T KOG1538|consen 22 PDGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDG-------KRF---------ASGS------------ 72 (1081)
T ss_pred CCCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccCC-------cee---------ccCC------------
Confidence 446777888889999999998 56778888999999999997543 122 2221
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+..|.+|+-+ .+-+-...+...|.++.|| .+.|+.|.-...-+|...+-.... -..
T Consensus 73 -------------------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~ks 131 (1081)
T KOG1538|consen 73 -------------------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HKS 131 (1081)
T ss_pred -------------------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hhh
Confidence 23789999864 2223334567789999998 577888766677788766432110 000
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
.....+|. . .-...+||..--. |.++-.. .
T Consensus 132 s~R~~~Cs------W-----tnDGqylalG~~n------GTIsiRN---------------------------------k 161 (1081)
T KOG1538|consen 132 SSRIICCS------W-----TNDGQYLALGMFN------GTISIRN---------------------------------K 161 (1081)
T ss_pred heeEEEee------e-----cCCCcEEEEeccC------ceEEeec---------------------------------C
Confidence 00000010 0 0001333332100 0000000 0
Q ss_pred ccCccceeeccccccccCCCCCCcc-cc-cCCCCCCCccCCcccccCCCCeEEEEECC--------CCcEEEEeccCCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQ-SA-IPGGKSNGTVNGHFPDADNVGMVIVRDIV--------SKNVIAQFRAHKSP 323 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~-sa-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~--------s~~~i~~f~aH~~p 323 (828)
+|+... .+ ..|.+++++. +. +.+.. | -+.+..+-|-|.. +|+.+..-+.-...
T Consensus 162 ~gEek~-~I------~Rpgg~Nspiwsi~~~p~s--g--------~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd 224 (1081)
T KOG1538|consen 162 NGEEKV-KI------ERPGGSNSPIWSICWNPSS--G--------EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD 224 (1081)
T ss_pred CCCcce-EE------eCCCCCCCCceEEEecCCC--C--------CCccceEEEEeccceeEEEEecceeecccccCCCC
Confidence 011100 00 1233333221 10 11000 0 1122234444432 23444333333344
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCc
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGT 403 (828)
-.||.+-|+|.++..|+.||. +++|- +.| ..|-++ |.-...|+.++..|+|+++++|+-|||
T Consensus 225 P~CisYf~NGEy~LiGGsdk~-L~~fT-R~G--------------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQ-LSLFT-RDG--------------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred chhheeccCCcEEEEccCCCc-eEEEe-ecC--------------eEEeec--cccceeEEEEEEccCCceEEEEEccCe
Confidence 568889999999999999987 78884 333 455555 223456999999999999999999999
Q ss_pred EEEEecC
Q 003336 404 SHLFAIN 410 (828)
Q Consensus 404 VhIwdl~ 410 (828)
+--|.+.
T Consensus 287 iACyNl~ 293 (1081)
T KOG1538|consen 287 IACYNLI 293 (1081)
T ss_pred eehhhhH
Confidence 9999874
No 238
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.74 E-value=0.00011 Score=55.05 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=31.1
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
.+.++ +++. ..|.+|+|+|++++||+++.|++|+|||
T Consensus 3 ~~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34455 4554 4599999999999999999999999997
No 239
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=8.7e-05 Score=81.27 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=63.2
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEE
Q 003336 317 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (828)
Q Consensus 317 f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 396 (828)
-++| .+|++|.+++||+.|+|||.+...|.|||..++ ....|. .+|. ..+.-+.||||+.+|.
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg------------~~~pL~--~~gl--gg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG------------QKIPLI--PKGL--GGFSLLKWSPDGDVLF 254 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC------------Cccccc--ccCC--CceeeEEEcCCCCEEE
Confidence 3466 699999999999999999999888999999886 222332 2333 2377899999999999
Q ss_pred EEeCCCcEEEEecCC
Q 003336 397 ISSSRGTSHLFAINP 411 (828)
Q Consensus 397 s~S~DGTVhIwdl~~ 411 (828)
+++-|++.+||..+.
T Consensus 255 aAt~davfrlw~e~q 269 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQ 269 (445)
T ss_pred Eecccceeeeehhcc
Confidence 999999999996653
No 240
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.72 E-value=0.033 Score=71.22 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=53.5
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC-----------ccccEEEEEEccCCC
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSN 393 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~-----------t~a~I~sIaFSpDg~ 393 (828)
..|+|+++|.++++-+.+++ |++||..++. ...+. ..|. .-.....|++++||+
T Consensus 807 ~Gvavd~dG~LYVADs~N~r-IrviD~~tg~------------v~tia--G~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHK-IKKLDPATKR------------VTTLA--GTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCE-EEEEECCCCe------------EEEEe--ccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 47999999998888777665 9999987651 11100 0010 001367899999999
Q ss_pred EEEEEeCCCcEEEEecCCCC
Q 003336 394 WIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 394 ~LAs~S~DGTVhIwdl~~~g 413 (828)
++++-+.+++|++||+.+..
T Consensus 872 lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCEEEEEECCCCc
Confidence 99999999999999998753
No 241
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.69 E-value=0.068 Score=55.18 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=63.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCC----------e-EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCC
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSP----------I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~p----------I-saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~ 365 (828)
+...|.|..+|+.+|+.+..+..+..+ + ..+.++ +| .+..++.+|..+.+ |+.++
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg----------- 193 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG----------- 193 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT-----------
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC-----------
Confidence 344789999999999999888765433 1 233333 55 66666677766666 99886
Q ss_pred CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+++.. .. .+.. ....++..|.+++.+++++.||+.++
T Consensus 194 ---~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 ---EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ---EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ---CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3445332 11 1222 25678888888889999999999874
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.62 E-value=0.00017 Score=91.23 Aligned_cols=91 Identities=19% Similarity=0.375 Sum_probs=68.5
Q ss_pred CCCeEEEEECCC--C-cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 299 NVGMVIVRDIVS--K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 299 ~dG~V~IwDl~s--~-~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.++.|.+||.-- . ..+. .+|.+.++++++-|.-++|+||+.+|. |.|||++.. +.+|.
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr------------ql~h~---- 2373 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR------------QLRHT---- 2373 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH------------HHHHH----
Confidence 456788898542 2 2333 899999999999999999999999998 899999753 11221
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
++. +. .-.++.+++.+|+++||+++.++-..++
T Consensus 2374 -------~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2374 -------FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred -------hhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 111 22 4468999999999999999987555444
No 243
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.008 Score=66.64 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=67.7
Q ss_pred EEEEECCCCcE-EEEeccCC-------CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC--CCCCccC------CCC
Q 003336 303 VIVRDIVSKNV-IAQFRAHK-------SPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACD------AGT 366 (828)
Q Consensus 303 V~IwDl~s~~~-i~~f~aH~-------~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~--~~~~~~~------~~~ 366 (828)
-.+||+.+.++ +.++ .|. ..|.+++|--|-+ +||||++-. |+||.+...+. |-+--+. ..-
T Consensus 268 P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCccccCccccCcchhhCchhh
Confidence 35688887554 2333 232 2467789977666 999999865 89999865411 1000000 000
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
-+..-+.+.|||. ..+..|-|+|...+|++++-...++||.-..
T Consensus 345 ~i~~~~~VLrGHR-Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 345 FIEKELTVLRGHR-SVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eecceeEEEeccc-ccccceeecCCcceEeccchhhheecccccc
Confidence 1122344557875 3588999999999999999999999997654
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0052 Score=71.18 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=78.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+-+.+.+++|.+|+...++.++.+++-...+..++.+|||+.|++||. .|++||+.+. +.+.+
T Consensus 117 iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~k--------------evv~~ 179 (541)
T KOG4547|consen 117 IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETK--------------EVVIT 179 (541)
T ss_pred eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCc--------------eEEEE
Confidence 344567899999999999999999999999999999999999999984 3999999986 44555
Q ss_pred EecCCccccEEEEEEccC-----CCEEEEE-eCCCcEEEEecCC
Q 003336 374 LQRGLTNAVIQDISFSDD-----SNWIMIS-SSRGTSHLFAINP 411 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpD-----g~~LAs~-S~DGTVhIwdl~~ 411 (828)
| .||. ..|.+++|--+ |+++.++ -.+.-+-+|-+..
T Consensus 180 f-tgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 F-TGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred e-cCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 4653 56999999887 6666553 3445567777754
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.58 E-value=0.00092 Score=81.30 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=79.6
Q ss_pred ccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 296 DADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~-~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
+.+.|..+|+|++++.+.+. +-=+|+..|..++|.|+ +|+|++.|=+ .++|+..-. ....|+
T Consensus 192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~~~-------------~l~~y~- 254 (967)
T KOG0974|consen 192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVNGT-------------QLEVYD- 254 (967)
T ss_pred EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecccc-------------eehhhh-
Confidence 34577899999999988766 56689999999999999 9999999976 899965421 122333
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
++-..-|+.++..++.-++.++..|+++++|++..-+.
T Consensus 255 --~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 255 --EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred --hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 33333499999999999999999999999999976433
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.58 E-value=0.013 Score=66.56 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=51.4
Q ss_pred EEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCC-EEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceee
Q 003336 118 VVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA-QVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (828)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~-~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piA 194 (828)
.|-+||..+++.-+..+-=+.|.+|..+ ++.++|+.++ +|.++|+.++... .+.-+ ..++ ...++
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS--~~~l---------Itdf~ 450 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKS--EYGL---------ITDFD 450 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Eeccc--ccce---------eEEEE
Confidence 6899999999865555555789999986 6777777654 8999999998632 22111 1111 12355
Q ss_pred ecc--ceEEEeC
Q 003336 195 VGP--RWLAYSG 204 (828)
Q Consensus 195 lg~--r~LAya~ 204 (828)
+++ |||||+-
T Consensus 451 ~~~nsr~iAYaf 462 (668)
T COG4946 451 WHPNSRWIAYAF 462 (668)
T ss_pred EcCCceeEEEec
Confidence 665 9999983
No 247
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00046 Score=76.10 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=85.2
Q ss_pred ccccCCCCeEEEEECC------CCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 294 FPDADNVGMVIVRDIV------SKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~------s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
+++++.|-.++||.+. +.++|.... .|.+.|-||+|+-..+.|.+|..+|++ ..-|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V-I~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV-IKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee-Eeeecccc------------
Confidence 4577888999999976 346766665 456899999999999999999999994 57899875
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
..||.+........|+.+..+|-.+.|++.+.++.|-+||+....
T Consensus 138 --qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 --QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred --eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 456666443333459999999999999999999999999997654
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.57 E-value=0.0057 Score=70.52 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=46.1
Q ss_pred CeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 323 PISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
.....+|||||+.|+..+. +|. .+||.+.....+ +..+ .+..+. ..+...+|||||++||..+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g--------~~~~---~lt~~~--~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEG--------QSPR---LLTKKY--RNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccc--------cceE---EeccCC--CCccceeECCCCCEEEEEEcC
Confidence 3466799999998887664 565 566654321000 0111 221111 236788999999999987754
Q ss_pred ---CcEEEEecCC
Q 003336 402 ---GTSHLFAINP 411 (828)
Q Consensus 402 ---GTVhIwdl~~ 411 (828)
..|++||+..
T Consensus 348 ~g~~~I~v~dl~~ 360 (428)
T PRK01029 348 KGVRQICVYDLAT 360 (428)
T ss_pred CCCcEEEEEECCC
Confidence 3577787754
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.074 Score=58.97 Aligned_cols=85 Identities=15% Similarity=0.285 Sum_probs=59.9
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc-EEEEEEccCCCEEEEEeC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSS 400 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~ 400 (828)
....+|..+|||++|..+-..-..|-+|.+.+. + .+|-.+.+-.+... -.+..|++++++|+++..
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~--~-----------g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD--G-----------GKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC--C-----------CEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 457889999999999887665556888888764 0 11222211122222 468899999999999886
Q ss_pred C-CcEEEEecCCCCCceeec
Q 003336 401 R-GTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 401 D-GTVhIwdl~~~gg~~~~~ 419 (828)
+ .+++||.+++..|..+..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 311 KSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCCcEEEEEEcCCCceEEec
Confidence 5 589999999987776654
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.00057 Score=78.62 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=81.8
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEecc------CCC-----CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCC
Q 003336 292 GHFPDADNVGMVIVRDIVSKNVIAQFRA------HKS-----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS 360 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~~i~~f~a------H~~-----pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~ 360 (828)
+.++.+..+|.|..||-.++..+.++.+ |.+ .|++|+|+-||-.++.|...|. +.|||++..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~------ 260 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRAS------ 260 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccC------
Confidence 3455667799999999998877776653 322 3999999999999999999998 789999875
Q ss_pred ccCCCCceeEEEEEecCCccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 361 ACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 361 ~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
..+..- +....-+|..+.|-+. .+--+++.+...++|||-.++.....+...
T Consensus 261 --------~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 261 --------KPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred --------Cceeec-ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc
Confidence 111111 2222235889999664 333444556678999999987776666553
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.036 Score=64.18 Aligned_cols=120 Identities=14% Similarity=0.280 Sum_probs=81.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.-.+.+.++....+...+. -.+||.+++|+|+|+-++..- .-=-.+-|||++- ..++.|-.|.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------------~~v~df~egp 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------------KPVFDFPEGP 313 (566)
T ss_pred cceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------------CEeEeCCCCC
Confidence 3467777777444444443 268999999999999887642 2222367888763 3566775554
Q ss_pred ccccEEEEEEccCCCEEEEEeC---CCcEEEEecCCCCCceeeccCCCCCCcccCCCCccceecCCCCCCCCCCcccccC
Q 003336 379 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCA 455 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~---DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~~~~~~q~~~~~ 455 (828)
. .++-|+|.|++|+.++- .|.+-|||+........+..- -.+++-|.|.+ |+.+.+
T Consensus 314 R----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-----------~tt~~eW~PdG------e~flTA 372 (566)
T KOG2315|consen 314 R----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-----------NTTVFEWSPDG------EYFLTA 372 (566)
T ss_pred c----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-----------CceEEEEcCCC------cEEEEE
Confidence 3 46789999999999875 589999999987776665432 23456666554 666644
Q ss_pred C
Q 003336 456 S 456 (828)
Q Consensus 456 ~ 456 (828)
.
T Consensus 373 T 373 (566)
T KOG2315|consen 373 T 373 (566)
T ss_pred e
Confidence 3
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.54 E-value=0.011 Score=73.40 Aligned_cols=116 Identities=11% Similarity=0.166 Sum_probs=67.4
Q ss_pred cCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC---CCEEEEEec-CCCEEEEEeCCCCCCCCC-CccCCCCceeE
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS---GILLVTASV-QGHNINIFKIIPGILGTS-SACDAGTSYVH 370 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPd---G~lLATaS~-DGt~I~IWdi~~~~~~~~-~~~~~~~~~~~ 370 (828)
|...|.+.+||++=+.++.... +|..+|..|+..|- ....++++. -.+-+-+|++.++..... .+++......+
T Consensus 1213 Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~ 1292 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSY 1292 (1431)
T ss_pred ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhh
Confidence 3456889999999888887766 55578888877763 245665555 334489999988721000 00000000000
Q ss_pred EEEEecCCccc--cEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 371 LYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 371 l~~L~RG~t~a--~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..--.+...+. .....++.--+.++.+|++|..|+.||....
T Consensus 1293 ~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1293 ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 00000000000 1234556666778999999999999999754
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.49 E-value=0.06 Score=60.37 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=63.5
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
....+|.+..+|..+++.+...... ....+ ..++..|..++.+|. +..+|..++ ..+++..
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p--~~~~~~vyv~~~~G~-l~~~d~~tG--------------~~~W~~~ 306 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDAS--SYQGP--AVDDNRLYVTDADGV-VVALDRRSG--------------SELWKND 306 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccC--CccCc--eEeCCEEEEECCCCe-EEEEECCCC--------------cEEEccc
Confidence 3456789999999999887766521 11122 235667777788887 789999876 3444432
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
. .......+... .+..|.+++.+|.+++||..++...-.+.
T Consensus 307 ~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 307 E-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred c-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 1 11111112222 46788999999999999987653333333
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.49 E-value=0.00025 Score=78.67 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=76.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
+.+..+.+|....+ +...+-+|-+-++.|+|+||++.+.||+.|++ |||=..... .-+..|--|
T Consensus 129 gD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~--------------f~IesfclG 192 (390)
T KOG3914|consen 129 GDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPAT--------------FVIESFCLG 192 (390)
T ss_pred CCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcc--------------cchhhhccc
Confidence 45567777877764 33556799999999999999999999999998 787654321 123344446
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
|+. -|..|+.-++ +.|+++|.|+|+++||+..+....++
T Consensus 193 H~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 193 HKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cHh-heeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 653 3888887765 56899999999999999988665333
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.001 Score=78.68 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=77.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC------C---CEEEEEeCCCCCCCCCCccCCC
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------G---HNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D------G---t~I~IWdi~~~~~~~~~~~~~~ 365 (828)
+-|.+.|+|.|+|+.++..-+.|..|++.|.+|.|--...++ +.+.. | +.+.|=|+++|
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~vtdLrtG----------- 508 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVVTDLRTG----------- 508 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEEEEcccc-----------
Confidence 456788999999999999999999999999999997666544 33321 1 11446677776
Q ss_pred CceeEEEEEe--cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 366 TSYVHLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 366 ~~~~~l~~L~--RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+ .|| ++...+.|.-|--|.-++|||+.-.|.-+.|||+.+.
T Consensus 509 --lsk--~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 509 --LSK--RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred --ccc--ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 111 232 4555566999999999999999999999999999653
No 256
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.46 E-value=0.00019 Score=81.78 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=80.4
Q ss_pred CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC--------------
Q 003336 291 NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-------------- 356 (828)
Q Consensus 291 ~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~-------------- 356 (828)
+.+|+-..+||.+.|.. +++++-..+.+|.+.|.|-.|+|||+-|+|++.||. |+||.-. |..
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~-iKiWSrs-GMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGV-IKIWSRS-GMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCce-EEEEecc-chHHHHHhhcCceeEEE
Confidence 44566677899999886 356666788999999999999999999999999997 9999632 210
Q ss_pred --CCCCccCCCCceeEEE--EE-------e-cCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 357 --GTSSACDAGTSYVHLY--RL-------Q-RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 357 --~~~~~~~~~~~~~~l~--~L-------~-RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
++.+..-..-...|++ .| + |.|. .-|.++.|++.+..+++|+.|-..+|||-
T Consensus 152 ~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EECCCCCceEEecCCeEEEeecccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecc
Confidence 0001000000001111 11 1 2222 24899999999999999999999999996
No 257
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.00043 Score=79.15 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=82.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSP--dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
++++++|-.+.|||.-..+.+..+. +|+..|-+++|=| +.++++||+.|.- |+|||+.....+. ..+.-....+
T Consensus 65 L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-i~lfdl~~~~~~~--~d~~~~~~~~ 141 (758)
T KOG1310|consen 65 LASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-IKLFDLDSSKEGG--MDHGMEETTR 141 (758)
T ss_pred EeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce-EEEEecccccccc--cccCccchhh
Confidence 5678889999999999989888887 9999999999999 5678999999975 9999997531000 0000000111
Q ss_pred EEEEecCCccccEEEEEEccCC-CEEEEEeCCCcEEEEecCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg-~~LAs~S~DGTVhIwdl~~ 411 (828)
.|.. ++ ..|-.|+-.|++ ..+-+++.|||++-+|+..
T Consensus 142 ~~~c---ht-~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 142 CWSC---HT-DRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred hhhh---hh-hhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 2221 11 237778889999 7889999999999999975
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.39 E-value=0.0023 Score=69.66 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec-----------------------------------CC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-----------------------------------QG 343 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~-----------------------------------DG 343 (828)
-+-.|.||.+.+.+.. .++--+..+..++|+|||++.|.++. ||
T Consensus 112 F~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg 190 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG 190 (447)
T ss_pred ceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC
Confidence 3457888888876652 33323445677888899888887754 34
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 344 t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
..+-|||.--. .++|..+||. .|..++|||.+++||+|+.|+.++|..
T Consensus 191 ~~laVwd~~Le--------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 191 NWLAVWDNVLE--------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cEEEEecchhh--------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 44556654322 2455666765 388999999999999999999998843
No 259
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.36 E-value=0.00081 Score=82.87 Aligned_cols=96 Identities=14% Similarity=0.263 Sum_probs=73.4
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEE
Q 003336 306 RDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (828)
Q Consensus 306 wDl~s~~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~ 384 (828)
|.. .|..++++..|...|..++.++. +.+|+|||+||+ ||||+...- .+.. +..+...+..+ ....+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~-~~~~------~s~rS~ltys~--~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKL-EGEG------GSARSELTYSP--EGSRVE 1102 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhh-hcCc------ceeeeeEEEec--cCCceE
Confidence 443 47789999999999999998875 599999999998 899999864 1110 11222223321 223588
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 385 DISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 385 sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+.+-+.+..+|+++.||.|+++++..+
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 8999999999999999999999999986
No 260
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.35 E-value=0.00017 Score=81.03 Aligned_cols=107 Identities=10% Similarity=0.271 Sum_probs=88.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++..|.++.-|+.+|+.++.|..-.+++..|+-+|=.-.+-+|-..|+ +-+|.-... ..|.+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~sk--------------ePLvK 288 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSK--------------EPLVK 288 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCc--------------chHHH
Confidence 456778899999999999999999988899999999999999999999998 899975543 22222
Q ss_pred E--ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 374 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 374 L--~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
+ +|| .|.+|++.++|+|+|+++.|..++||||..+....+++
T Consensus 289 iLcH~g----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 289 ILCHRG----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred HHhcCC----CcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 2 233 48999999999999999999999999999886444443
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.005 Score=70.98 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=41.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC------CCEEEEEeCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------GHNINIFKII 352 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D------Gt~I~IWdi~ 352 (828)
-.|.|-|||+.+.+.+..+.+-.. +-..|+|||.+|+||..- .. |+||+..
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhyt 390 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHYT 390 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCC-eEEEEec
Confidence 357899999999999999997654 456899999999998763 33 8999874
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0016 Score=75.34 Aligned_cols=111 Identities=9% Similarity=0.099 Sum_probs=91.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+-+...|.|.+|++..++.-..|. .|.++|.++..+.+-..|-|++.|++ +-.|+.... +++.
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~--------------~~~~ 138 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK--------------VIIR 138 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc--------------eeee
Confidence 335567899999999999988887 89999999999999999999999998 789998764 3433
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
... +.+ ..+.++|.+|||+.++++| ++|++||+++..-...|.+|...
T Consensus 139 ~~~-~~~-~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 139 IWK-EQK-PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eec-cCC-CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 333 222 3489999999999999886 68999999998777899999753
No 263
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00059 Score=47.39 Aligned_cols=39 Identities=26% Similarity=0.663 Sum_probs=35.0
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 311 ~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
++++..+.+|...|.+++|+|++.++++++.||+ +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 4567788899999999999999999999999997 89996
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.30 E-value=0.008 Score=66.02 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCCeEEEEE--CCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 298 DNVGMVIVRD--IVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 298 ~~dG~V~IwD--l~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
...|.|.+-. .....++.++.+|..+|.+++|+|.-.+|.+++.|-. +.+||+--. ....|.+.
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~-------------~g~~~el~ 237 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGR-------------KGTAYELQ 237 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCC-------------cceeeeec
Confidence 4455555533 3456789999999999999999999999999999955 789999643 12334554
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+ +. ..|+.++.-+--+.+.+++.||-|-+|+.+-.
T Consensus 238 g-h~-~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 G-HN-DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred c-ch-hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 3 32 35888888888899999999999999999753
No 265
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.30 E-value=0.0013 Score=71.61 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=68.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
..+++|.+|++...+--..+..-..++++++|||||+ +|.|.+.|-+ |.||.+.+. ++.+ +.
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~------------~~~~---~~- 130 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQ------------KGYL---LP- 130 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccc------------eeEE---ec-
Confidence 3578999999998888888988888999999999996 5666777765 899999874 1222 21
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+..+.+..++|.|||++.|..+.+.
T Consensus 131 -~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 131 -HPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred -ccccCceeEEECCCCceeeeeeccc
Confidence 2234578999999999999998773
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.29 E-value=0.16 Score=56.88 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=58.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~-~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.....+|.|..+|..+++.+..+.... ........ .|.+|++++.+|. +.+||..++ +.+++
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG--------------~~~~~ 345 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDG--------------SFVAR 345 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEE
Confidence 334578999999999998887663211 11222222 4678888999997 889998876 34455
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
+.-+.. ....+.++. ++ .|.+++.||++..|.
T Consensus 346 ~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 346 LKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 532211 011222222 33 477899999998873
No 267
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.24 E-value=0.0053 Score=66.79 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=69.2
Q ss_pred CCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 298 DNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 298 ~~dG~V~IwDl~s~---~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
..|..-.||...++ ++.-.|..|....++|.|+|.+..+|++|.- +.|-||=......+=. + .|+.+-
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~ENdWWV-------s-KhikkP 144 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQENDWWV-------S-KHIKKP 144 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecccceeh-------h-hhhCCc
Confidence 34445556655322 4555666788899999999999999999976 5689987654311000 0 122221
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
+ ...|.+++|.|++-+||+||.|+.++||..
T Consensus 145 ---i-rStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 145 ---I-RSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred ---c-ccceeeeeccCCcceecccccCcceeEEEE
Confidence 1 134999999999999999999999999975
No 268
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.0043 Score=70.55 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=65.6
Q ss_pred ccCCCCeEEEEECCCC------cEEEEeccC------CCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCc-
Q 003336 296 DADNVGMVIVRDIVSK------NVIAQFRAH------KSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSA- 361 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~------~~i~~f~aH------~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~- 361 (828)
.++.+-.++|||...- .++.+|..| .--|+|++|+.+|. +||+=.+. . |.+|.-..+ .|....
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe-~-IYLF~~~~~-~G~~p~~ 375 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE-D-IYLFNKSMG-DGSEPDP 375 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc-c-eEEeccccc-cCCCCCC
Confidence 3445556666665531 134444433 23599999998766 55554443 3 788843332 221110
Q ss_pred -cCCCCceeEEEEEecCCcccc-EEEEEE-ccCCCEEEEEeCCCcEEEEecCCC
Q 003336 362 -CDAGTSYVHLYRLQRGLTNAV-IQDISF-SDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 362 -~~~~~~~~~l~~L~RG~t~a~-I~sIaF-SpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+-......++| +||.+.. |-.+-| -|.+.|+++||+=|-|.||+-+..
T Consensus 376 ~s~~~~~~k~vY---KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 376 SSPREQYVKRVY---KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred Ccchhhccchhh---cccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 00011222334 4555544 777765 799999999999999999998764
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.20 E-value=0.0034 Score=71.03 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=79.9
Q ss_pred ccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 296 DADNVG-MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 296 s~~~dG-~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
-+..|| .+-|+|..+++. ..+...-+.|-+|+.+|||+.++.|-.... |.+.|+.++ .++.+-+-
T Consensus 376 igt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididng------------nv~~idkS 441 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNG------------NVRLIDKS 441 (668)
T ss_pred EeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCC------------CeeEeccc
Confidence 345666 899999998765 566667789999999999999999887765 778888886 33443333
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCC----cEEEEecCCCCCceeecc
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DG----TVhIwdl~~~gg~~~~~~ 420 (828)
+-| -|.+++|+|+++|||-+--+| .|||||+.. +....+++
T Consensus 442 ~~~----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT 486 (668)
T COG4946 442 EYG----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTT 486 (668)
T ss_pred ccc----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecC
Confidence 322 399999999999999887765 699999964 34444443
No 270
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.12 E-value=0.0057 Score=73.84 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=126.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCC-CEEEEEEcCCEEEEE-eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S~riLAVs-~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
+..+--+|+++.+..+.....+ .|.=++-+.+++.++ ..++|.+-|..+.+.++++.+|.. .+..|
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~------------siSDf 223 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG------------SISDF 223 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc------------ceeee
Confidence 4557778999999988888855 788888887777664 568999999999999999998853 12233
Q ss_pred eeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCC
Q 003336 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (828)
Q Consensus 194 Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~ 273 (828)
.+....|+.++. .. ..|
T Consensus 224 Dv~GNlLitCG~---------------------------------------------------S~----R~~-------- 240 (1118)
T KOG1275|consen 224 DVQGNLLITCGY---------------------------------------------------SM----RRY-------- 240 (1118)
T ss_pred eccCCeEEEeec---------------------------------------------------cc----ccc--------
Confidence 333333332210 00 000
Q ss_pred CCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCC
Q 003336 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKII 352 (828)
Q Consensus 274 ~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~ 352 (828)
.-.-|--|+|||++..+.+.-+.-|..| .-+.|.|. -+.||.+|.-|. +.+-|..
T Consensus 241 ----------------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~ 296 (1118)
T KOG1275|consen 241 ----------------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTA 296 (1118)
T ss_pred ----------------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccc
Confidence 0013557999999999888888877777 66899997 557888888888 6787744
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
+. ++.. ..++.+. ....-|..++||+.++.+|.+-.+|.||+|.=
T Consensus 297 ~l--sNP~--------~~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TL--SNPP--------AGVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cc--CCCc--------cceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 32 0000 1111221 11223889999999999999999999999993
No 271
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.05 E-value=0.0045 Score=72.07 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred EEEEECCCCc--EEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 303 VIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 303 V~IwDl~s~~--~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
-.+|++...+ .++..+ .+.+.|.|.+++|+.+.|+.|..||. |.+||...+ ..+..+. .
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~-------------~t~~~ka--~-- 299 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRG-------------VTLLAKA--E-- 299 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCC-------------eeeeeee--c--
Confidence 3456766443 233222 67789999999999999999999998 899998765 1221111 1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
-....++|+|||..|++|+..|.+.+||+.-.
T Consensus 300 -~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 300 -FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred -ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 12678999999999999999999999999754
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.99 E-value=0.0087 Score=67.32 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=72.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~---------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
|.|.|.|..+++.+.++..=..|-. + +||||+.|..|.. +...|.|||+.+. ..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------------~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------------LPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------------cEE
Confidence 7899999999999999985555544 4 9999999988877 5556999999986 233
Q ss_pred EEEecCCc-----cccEEEEEEccCCCEEEEEe-C-CCcEEEEecCCC
Q 003336 372 YRLQRGLT-----NAVIQDISFSDDSNWIMISS-S-RGTSHLFAINPL 412 (828)
Q Consensus 372 ~~L~RG~t-----~a~I~sIaFSpDg~~LAs~S-~-DGTVhIwdl~~~ 412 (828)
.++.-+.. ...-..+++||||++|.+.. + +.+|.|.|+...
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 34432211 11245789999999999877 4 789999999875
No 273
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.97 E-value=0.26 Score=54.39 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=64.2
Q ss_pred eEEEEECCCCcEEEE--ec--cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE---
Q 003336 302 MVIVRDIVSKNVIAQ--FR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--- 374 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~--f~--aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L--- 374 (828)
.+.+.|..+++.+.+ +. -|.-.|..|+++++|+.++..-.+|- -++..+- -+... .+....+..+
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~---~~~~~PL-va~~~----~g~~~~~~~~p~~ 210 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD---PGDAPPL-VALHR----RGGALRLLPAPEE 210 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC---CCccCCe-EEEEc----CCCcceeccCChH
Confidence 466778889988887 52 37789999999999998887766654 1222211 00000 0000111111
Q ss_pred -ecCCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCC
Q 003336 375 -QRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 412 (828)
Q Consensus 375 -~RG~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~ 412 (828)
.+.+.. -|-+|+|++|+.++|++|-+ +.+.+||..+.
T Consensus 211 ~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 211 QWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred HHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 011111 28899999999999988876 57899999875
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.96 E-value=2.1 Score=54.44 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC--CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D--Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
-..++||+-. |....+-..-.+-=.+|+|-|+|.++|+.... .+.|..|.- .| ..+--+.|+..
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG------------LrhgeF~l~~~ 301 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG------------LRHGEFTLRFD 301 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC------------cEeeeEecCCC
Confidence 3689999865 55444333222233578999999999998762 234555542 22 22333555432
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.....|..++|++||..||+...|. |.+|-..-|.-
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 3334599999999999999988665 99999987643
No 275
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00053 Score=69.08 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=28.1
Q ss_pred eeeeeeeeeecCC-CcccccCceecccccccc
Q 003336 635 LYISEAELQMHPP-RIPLWAKPQSMMIKDFKM 665 (828)
Q Consensus 635 ~~ls~aE~~~~~~-~~plW~~~~~~~~~~~~~ 665 (828)
.||+++|+.||.+ |++|||+|||-|+++.+.
T Consensus 28 eWl~hVEi~Th~gPHRriWmGPQFef~eih~d 59 (247)
T KOG4415|consen 28 EWLPHVEIRTHLGPHRRIWMGPQFEFFEIHED 59 (247)
T ss_pred ccccceEEEeccCccceeeecCceeEEEecCC
Confidence 7999999999999 999999999999887543
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0067 Score=65.42 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=74.8
Q ss_pred CCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 298 DNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
...|.+.+-+..... .++..++|..++...+|+- +-.++.||++||. +.-||++-. ...++.-
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------------~~~i~~n 205 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------------KTFIWHN 205 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------------cceeeec
Confidence 345566655555443 3458899999999999986 5579999999997 899999932 1344443
Q ss_pred ecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 375 QRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
.+-++ .-|.+|.=|| +..+|++|+-|.+|++||...-+.+
T Consensus 206 ~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 206 SKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 23333 3478887775 7899999999999999999865443
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.23 Score=57.82 Aligned_cols=113 Identities=14% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+.+..|+.=-..|+++|-=++.+.+++ .-.-.|+++.+.|+- . +|+..+-.. ..
T Consensus 220 P~GTYL~t~Hk~GI~lWGG~~f~r~~R---F~Hp~Vq~idfSP~E--------k------YLVT~s~~p--------~~- 273 (698)
T KOG2314|consen 220 PKGTYLVTFHKQGIALWGGESFDRIQR---FYHPGVQFIDFSPNE--------K------YLVTYSPEP--------II- 273 (698)
T ss_pred CCceEEEEEeccceeeecCccHHHHHh---ccCCCceeeecCCcc--------c------eEEEecCCc--------cc-
Confidence 446677776788999998665443332 224578999998851 1 332222111 00
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CC-----CEEEEEEcCCEEEEEeCCEEEEEECCCCce
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RS-----PIYSVRCSSRVVAICQAAQVHCFDAATLEI 167 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s-----~V~sV~~S~riLAVs~~~~I~IwDl~t~~~ 167 (828)
++.. ...+..++|||++||...+++.. ++ +++.=.++.+++|-...+.|.||+...+.+
T Consensus 274 -------~~~~------d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~l 338 (698)
T KOG2314|consen 274 -------VEED------DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFML 338 (698)
T ss_pred -------cCcc------cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceee
Confidence 0000 11336799999999999988875 22 444444458999988789999999988654
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.71 E-value=0.35 Score=55.85 Aligned_cols=91 Identities=13% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
...+.|+++....+ .....-++||...+|+|.+..+++.+ ..-..+.+||++.. ..+.+-.+.
T Consensus 254 esnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------------l~~~~Pe~~ 317 (561)
T COG5354 254 ESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------------LRFYFPEQK 317 (561)
T ss_pred cceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc---------------eEEecCCcc
Confidence 34788899885433 33335578999999999999999877 33334788998753 222332221
Q ss_pred ccccEEEEEEccCCCEEEEEeCC---CcEEEEecC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAIN 410 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~D---GTVhIwdl~ 410 (828)
=..+.|||.++|++.++-| |.+-|||..
T Consensus 318 ----rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 318 ----RNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ----cccccccCcccEEEEecCCccccceEEeccC
Confidence 2457799999999998776 678888864
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.28 Score=54.54 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCC
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRG 402 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DG 402 (828)
+-+..|+|+|++|++.+-.--.|.+|++..+... ....+.+..|.- -..|.|+|++++.-+.+ .++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~----------~~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT----------PADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccc----------cccccccCCCCC---cceEEEcCCCcEEEEEeccCC
Confidence 5677899999999998765445899999865110 011223344432 46799999999987666 699
Q ss_pred cEEEEecCCCCCc-eeeccCCCCCCcccCCC
Q 003336 403 TSHLFAINPLGGS-VNFQPTDANFTTKHGAM 432 (828)
Q Consensus 403 TVhIwdl~~~gg~-~~~~~H~~~~~~~~~~~ 432 (828)
||-+|.+++..+. ..++.+...+..|.|-.
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 9999999997554 47788877777665433
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.62 E-value=0.67 Score=48.81 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
|.|..++.. ++....+. .-...+.|+|+|||+.|..+......|..|++... +. .....+.+..+..+.
T Consensus 115 g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~--~~-----~~~~~~~~~~~~~~~-- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD--GG-----ELSNRRVFIDFPGGP-- 183 (246)
T ss_dssp EEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT--TC-----CEEEEEEEEE-SSSS--
T ss_pred cceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccc--cc-----ceeeeeeEEEcCCCC--
Confidence 677777777 44333332 23456889999999977766555555777777542 00 000122333443221
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
...-.+++..+|++.++....+.|.+|+-.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 236789999999999888888999988865
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.52 E-value=0.47 Score=51.48 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEecC----CC------EEEEEeCCCCCCC-C--CCccCCCC------ceeEEEE----Eec
Q 003336 320 HKSPISALCFDPSGILLVTASVQ----GH------NINIFKIIPGILG-T--SSACDAGT------SYVHLYR----LQR 376 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~D----Gt------~I~IWdi~~~~~~-~--~~~~~~~~------~~~~l~~----L~R 376 (828)
+...|+++.++|.-++|..|+-. |. -+--|++..+.+. . .+..+.-. ....+.. .++
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 36789999999998888776542 11 1456777665221 0 01111100 0111111 112
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
+.....|..|+.||||+.||+...+|++-||++........+.
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 3223349999999999999999999999999997765544443
No 282
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.38 E-value=0.018 Score=62.92 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 298 DNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 298 ~~dG~V~IwDl~s~---~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.+...|.||..... +..++++.|...|++|+|+|.+..|+|++.|.. -.||....+-.+. ....|.++
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~~Wk--------ptlvLlRi 99 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGGTWK--------PTLVLLRI 99 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCCeec--------cceeEEEe
Confidence 34557888876654 578899999999999999999999999999976 6899885431110 01123333
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.| ...+|.|||.++.||++|.-+.|-||=++.
T Consensus 100 Nr-----AAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 100 NR-----AATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred cc-----ceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 33 378999999999999999999999988764
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.31 E-value=0.05 Score=66.08 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=42.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEEEe----------CCEEEEEECCCCceE
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAICQ----------AAQVHCFDAATLEIE 168 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAVs~----------~~~I~IwDl~t~~~l 168 (828)
++|.+-|+++.+.+|++.. ...|.++...+++|+.|. |.-|.|||++.++.+
T Consensus 197 G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 7899999999999999985 568888888888877652 345889999988743
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.30 E-value=0.76 Score=59.10 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec--CC----ccccEEEEEEccCCCEEEE
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR--GL----TNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R--G~----t~a~I~sIaFSpDg~~LAs 397 (828)
...|+|+|+|+.|..+..+.+.|++||+.++.. ....++.......++.+-. |. .-..-..|+|++||+.+++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 456999999996666666555699999876410 0000000000000111100 00 0011358999999999999
Q ss_pred EeCCCcEEEEecCC
Q 003336 398 SSSRGTSHLFAINP 411 (828)
Q Consensus 398 ~S~DGTVhIwdl~~ 411 (828)
-+.+++|++||...
T Consensus 821 Ds~N~rIrviD~~t 834 (1057)
T PLN02919 821 DSYNHKIKKLDPAT 834 (1057)
T ss_pred ECCCCEEEEEECCC
Confidence 99999999999865
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.15 E-value=0.38 Score=51.83 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=60.3
Q ss_pred cccccCCCCeEEEEECCCCcEE-----EEeccCCCCeEEEEEcCCCC--EEEEEecCCCEEEEEeCCCCCCCCCCccCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVI-----AQFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i-----~~f~aH~~pIsaLaFSPdG~--lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~ 365 (828)
.|+.+..||.+.|||++..... .+-.-|.+.|..+.|+|-|. ||.-.---+. ++|-|++++..
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~--------- 286 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVN--------- 286 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCce---------
Confidence 5777889999999999975422 22336889999999998765 3444333444 79999988611
Q ss_pred CceeEEEE---EecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 366 TSYVHLYR---LQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 366 ~~~~~l~~---L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
++.+.. ..|.+....|..-+|+.++.-+-+.+.+
T Consensus 287 --~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 287 --HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred --eeEEecCccccccccccccccccccCCCcccccccch
Confidence 111111 1122222237777787776665555443
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.017 Score=66.32 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=84.0
Q ss_pred cccccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC-----C--C
Q 003336 293 HFPDADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----G--T 358 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s-------~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~-----~--~ 358 (828)
.|++++.|.+|++|.++. ..+..+.++|+.+|..+.|-.|-+++|++ ||- |++||-.-+.. + .
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g-iHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG-IHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc-ceeecccccchhHhhhcCcc
Confidence 466788999999999874 34777888999999999999999988875 565 89999655411 0 0
Q ss_pred CCcc------------------CCCCc----------eeEEEEEec-CCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 359 SSAC------------------DAGTS----------YVHLYRLQR-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 359 ~~~~------------------~~~~~----------~~~l~~L~R-G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
.+++ ...+. ..+-+++.. ...++.+.+|+..+.|+|+|++-+.|++-+.|.
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 0000 00000 111111110 011234788999999999999999999999998
Q ss_pred CCCCCceeeccC
Q 003336 410 NPLGGSVNFQPT 421 (828)
Q Consensus 410 ~~~gg~~~~~~H 421 (828)
..+.-+-.++..
T Consensus 906 R~G~vINswrpm 917 (1034)
T KOG4190|consen 906 RNGKVINSWRPM 917 (1034)
T ss_pred CCCceeccCCcc
Confidence 775444455543
No 287
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.06 E-value=0.014 Score=64.22 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=72.8
Q ss_pred CcccccCCCCeEEEEECCCCc----------------EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCC
Q 003336 292 GHFPDADNVGMVIVRDIVSKN----------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI 355 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~----------------~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~ 355 (828)
..|+-.+..|.|+|.|++... ...-|..-...|+.++|+++|+|++|-+.- + ++|||+...
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme- 303 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNME- 303 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEecccc-
Confidence 456666788999999998421 111122234678999999999999996654 4 899999543
Q ss_pred CCCCCccCCCCceeEEEEEecCCc-----------cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 356 LGTSSACDAGTSYVHLYRLQRGLT-----------NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~L~RG~t-----------~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
. .....|.++.-.. -..-..++||-++.++++||-..-.|+|++..+
T Consensus 304 ~----------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 304 A----------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred C----------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 0 0122233321110 011356899999999999999999999997653
No 288
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.99 E-value=0.033 Score=63.60 Aligned_cols=58 Identities=12% Similarity=0.282 Sum_probs=51.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCC
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~ 353 (828)
++++..|.|.|||-.+++.|..+++...-|+||.=.|-=-+|||++.|-. |+||--..
T Consensus 410 vSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWTP~~ 467 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWTPLT 467 (559)
T ss_pred EecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeecCCc
Confidence 46778899999999999999999998889999999999999999999965 99997543
No 289
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.80 E-value=0.47 Score=52.25 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=59.7
Q ss_pred CeEEEEECCCCc-EEE--EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 301 GMVIVRDIVSKN-VIA--QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 301 G~V~IwDl~s~~-~i~--~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
+.|.||++...+ .+. .+..+. .|.+|.. -+.+++.|+...- +.++..... ...+..+.|.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~-~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~-------------~~~l~~va~d 169 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPF-YITSLSV--FKNYILVGDAMKS-VSLLRYDEE-------------NNKLILVARD 169 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSS-SEEEEEE--ETTEEEEEESSSS-EEEEEEETT-------------TE-EEEEEEE
T ss_pred CEEEEEEccCcccchhhheecceE-EEEEEec--cccEEEEEEcccC-EEEEEEEcc-------------CCEEEEEEec
Confidence 578888887766 322 222222 4555544 3568888887655 666654432 1334455555
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.....+.+++|-+|++.++.+..+|.++++...+
T Consensus 170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 5555689999987778999999999999999975
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.023 Score=63.57 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=74.9
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc
Q 003336 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (828)
Q Consensus 303 V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a 381 (828)
|++.+-.+.+.+..+..|..-|..|+|||.-. +|..||.+.+ |+|+|+.+. .+...|..+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~------------~~vssy~a~-----~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETS------------CVVSSYIAY-----N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccc------------eeeeheecc-----C
Confidence 78888888777778889999999999999877 7888888765 999999986 234445542 3
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEecCCCCCc
Q 003336 382 VIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 382 ~I~sIaFSpDg~-~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
.|+++||.-|.. +|-.|-.+|.|.|||+....++
T Consensus 237 ~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 237 QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred CceeeeeccCCcceeEEeccCceEEEEEccCCCch
Confidence 599999998765 4556667899999999876554
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.65 E-value=0.023 Score=60.62 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=72.0
Q ss_pred ccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCC--CCCc--cCCC--
Q 003336 294 FPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILG--TSSA--CDAG-- 365 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~-~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~--~~~~--~~~~-- 365 (828)
...+..+|.|.|||.+... ++..+++|+.+|.-+-|.| ++..|+|+|.||. +--||..+...+ .... ..|.
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsg 273 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSG 273 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccC
Confidence 3467789999999999875 5567889999999999999 6889999999998 567887643110 0000 0010
Q ss_pred CceeEEEEEecCCccccEEEE-EEccCCCEEEEEeCCCcEEEEe
Q 003336 366 TSYVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~a~I~sI-aFSpDg~~LAs~S~DGTVhIwd 408 (828)
..++-+.++. +.-+....+| +|.--|..|++|++-+-|.|++
T Consensus 274 D~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 274 DPVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CcccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 0111111221 1112222233 3555677888998888887765
No 292
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.61 E-value=0.092 Score=67.82 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=88.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC-----CCCCc------
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSSA------ 361 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~-----~~~~~------ 361 (828)
+++++.||.|++|....++.+..++ +-...|+.+.|+.+|..+..+..||. +-+|.+.+.+. ++-++
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeee
Confidence 4578899999999999999988888 33378999999999999999999998 89999876421 11000
Q ss_pred -----------c-----CCC----CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 362 -----------C-----DAG----TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 362 -----------~-----~~~----~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
. .+. +....+.+.+- ..++++++-|.-+.|.+|+.+|.|.|||+..-.-...++
T Consensus 2302 ~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~----~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2302 GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD----GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred ehhhhccccCCCCCcccchhcccCcccceeeeecC----CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 0 000 11111122211 237899999999999999999999999997654444444
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=0.047 Score=60.25 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=84.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
+.+-.|-|-|++++.. ..|. -++.|-++.|.-.+.++..|...|. |-+.|++....| ..++...|..+
T Consensus 231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG---------~~~~a~rlyh~ 298 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQG---------NGWCAQRLYHD 298 (425)
T ss_pred cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccC---------CCcceEEEEcC
Confidence 3455788888888754 4454 5678999999999999999999998 789999875222 23444455322
Q ss_pred CccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCC---ceeeccCCCCCCc
Q 003336 378 LTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG---SVNFQPTDANFTT 427 (828)
Q Consensus 378 ~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg---~~~~~~H~~~~~~ 427 (828)
..|.++..=. ++++|++++.+|+|++||+....+ .....+|.+....
T Consensus 299 ---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 299 ---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY 349 (425)
T ss_pred ---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence 2366665544 678999999999999999988777 6778899886444
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.38 E-value=2 Score=44.20 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEEeCCEEEEEECCCCceEEEE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~riLAVs~~~~I~IwDl~t~~~l~tL 171 (828)
+.|..||..+|+.+.+..++..+.. +....++++++.++.|++||+.+++.+++.
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee
Confidence 7799999999999999988654332 223455555666789999999999999884
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.33 E-value=0.22 Score=53.52 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=66.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.+++.+.+..+.+...+++. -.+..++.|+|++++++-++-.. |-.|.+... . +.+.+.+-..+
T Consensus 139 t~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------------s-ey~~~~~~a~t 202 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------------S-EYIENIYEAPT 202 (344)
T ss_pred ceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------------c-ceeeeeEeccc
Confidence 34444455555444444432 12788999999999999887655 667777653 0 11122222222
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
...=.+.+||.....+|+++.||++-|||+...+-+
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 223567899999999999999999999999765433
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.32 E-value=0.11 Score=61.93 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 294 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
+++...|-.|..||+.+. .++..+..-...-+.|+|+- ++..||+ ..|+.|+|||++.+ + ..+
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~g---s----------~pl 194 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKG---S----------TPL 194 (1081)
T ss_pred eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCC---C----------cce
Confidence 344566778999999985 46666665556677899986 7777776 56778999999876 1 234
Q ss_pred EEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCC
Q 003336 372 YRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~g 413 (828)
..+++ ++ +.|+.++|.. --..+.+++.||||+.|+.+...
T Consensus 195 ~s~K~-~v-s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 195 CSLKG-HV-SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred EEecc-cc-eeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 56654 33 4699999965 34567899999999999998753
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.015 Score=66.69 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=62.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC
Q 003336 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (828)
Q Consensus 313 ~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 392 (828)
.+..|.+|+..|.+++-=.+..-+++||.|+| +++|.+++.- +..+.-.+-++.. .|+ ..|.+|-|-.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~Eg-------D~~~tsaCQfTY~-aHk-k~i~~igfL~~l 796 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEG-------DEIGTSACQFTYQ-AHK-KPIHDIGFLADL 796 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEecccc-------CccccceeeeEhh-hcc-Ccccceeeeecc
Confidence 45678899999998877677778999999988 8999998751 1111112333332 122 359999999999
Q ss_pred CEEEEEeCCCcEEEEec
Q 003336 393 NWIMISSSRGTSHLFAI 409 (828)
Q Consensus 393 ~~LAs~S~DGTVhIwdl 409 (828)
+++|+ .||-+|+||-
T Consensus 797 r~i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 797 RSIAS--CDGGIHLWDP 811 (1034)
T ss_pred ceeee--ccCcceeecc
Confidence 88875 5999999994
No 298
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.064 Score=63.08 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cCCccccEEEEEEccCCCEEEEEeCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
.|--+-|+|.=.++|++-.+|. +-|.++. . .+++++. +|... ..++||.|||+.||+|-.|
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~--------------qRlwtip~p~~~v--~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W--------------QRLWTIPIPGENV--TASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec-c--------------ceeEeccCCCCcc--ceeeeecCCCCEEEEEecC
Confidence 4667889999999999999998 5677765 2 4677775 55421 2599999999999999999
Q ss_pred CcEEEEecCCCCCcee
Q 003336 402 GTSHLFAINPLGGSVN 417 (828)
Q Consensus 402 GTVhIwdl~~~gg~~~ 417 (828)
|||+|-|+.+.+....
T Consensus 84 G~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVS 99 (665)
T ss_pred CeEEEEEccCCCceec
Confidence 9999999999877655
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.17 E-value=0.24 Score=57.17 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEE-EEecCCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLV-TASVQGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLA-TaS~DGt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
...|.++|+.+++...... ..+...+..|||||+.|+ +.+.+|. .|.++|+..+ ..+. +..+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g------------~~~~---LT~~ 275 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK------------TLTQ---ITNY 275 (419)
T ss_pred CCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC------------cEEE---cccC
Confidence 3489999999886543332 445566788999998665 4444443 3556676544 1222 2222
Q ss_pred CccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCce
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSV 416 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg~~ 416 (828)
. .......|||||++|+-.+++ |.-+||.+...++..
T Consensus 276 ~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 276 P--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred C--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 1 112356899999999888754 565677665544443
No 300
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.16 E-value=1.8 Score=48.03 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=56.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
|.|..+|- .+..++.+..|-.--+.|+|||||+.|..+......|+-|++... .+... . ........+..|.
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~g~~~--~--~~~~~~~~~~~G~-- 214 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-TGPIG--G--RRGFVDFDEEPGL-- 214 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-cCccC--C--cceEEEccCCCCC--
Confidence 44555554 466667776665556779999999999988887665777766531 11100 0 0001111111222
Q ss_pred ccEEEEEEccCCCEEEEEeCCC-cEEEEecC
Q 003336 381 AVIQDISFSDDSNWIMISSSRG-TSHLFAIN 410 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DG-TVhIwdl~ 410 (828)
--.++.-.||.+.+++-.+| -|++|+-.
T Consensus 215 --PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 215 --PDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred --CCceEEeCCCCEEEecccCCceEEEECCC
Confidence 34566777777765444443 67777665
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.14 E-value=2.5 Score=47.90 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=43.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.-+|.+||+.+.+.+....+.+ +...+++++...++.|+.+|+.|++.+.+...
T Consensus 130 g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 6788999999999998887665543 22234555556678999999999999888754
No 302
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=95.12 E-value=0.069 Score=57.88 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=70.8
Q ss_pred cccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 295 PDADNVGMVIVRDIV-SKNVIAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~-s~~~i~~-f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
-+++.||.+.-||++ .++.+.+ .+-|+..|.+|.=|| .+.++||||.|-+ |++||++.- .+.|
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm-------------~kPl 247 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM-------------GKPL 247 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc-------------cCcc
Confidence 467899999999999 4556655 678999999998886 7999999999987 999999853 0112
Q ss_pred EEEecCCccccEEEEEEccCC-CEEEEEeCCCcEEEEecCCCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg-~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+. +....-|+.|+++|-- ..|..++.-.-.+|-+++..-.
T Consensus 248 ~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 248 FK---AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cc---CccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 21 1112347888888732 2333444455566666655433
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1 Score=51.00 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CC-EEEEEeCCEEEEEECCCCc
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLE 166 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~r-iLAVs~~~~I~IwDl~t~~ 166 (828)
.++|+|.|++|..++.+......+++++|. .. +.|.-..+.|+|||++..+
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 489999999999999999999999999995 33 3344567899999999754
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.01 E-value=12 Score=47.88 Aligned_cols=76 Identities=8% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEE
Q 003336 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMIS 398 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~ 398 (828)
....|..|+|++|+++||.--.|. |.+|-.... ++.|..--+-.....+..+.|+| +...|.+.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NY-------------HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNY-------------HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC--ceEEEeeCC-------------EEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 445789999999999999977663 899988764 22222211111112245599999 56668888
Q ss_pred eCCCcEEEEecC
Q 003336 399 SSRGTSHLFAIN 410 (828)
Q Consensus 399 S~DGTVhIwdl~ 410 (828)
+..|.+.++++.
T Consensus 368 t~~g~~~~~~~~ 379 (928)
T PF04762_consen 368 TSNGQYEIYDFA 379 (928)
T ss_pred ecCCcEEEEEEE
Confidence 887888776653
No 305
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.92 E-value=7.4 Score=42.83 Aligned_cols=50 Identities=6% Similarity=0.246 Sum_probs=41.0
Q ss_pred CEEEEEECCCC-------cEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCc
Q 003336 117 TVVHFYSLRSQ-------SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLE 166 (828)
Q Consensus 117 ~tVrlWDL~Tg-------~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~ 166 (828)
+.|.++++... +.++...++.+|++|..-+..|+++...+|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 88999999985 445666789999999886666888889999999998777
No 306
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.65 E-value=0.05 Score=37.25 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=26.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
..|.+++|.++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999996
No 307
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.64 E-value=0.18 Score=55.69 Aligned_cols=79 Identities=28% Similarity=0.332 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC---Cc-----------cccEEEEE
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG---LT-----------NAVIQDIS 387 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG---~t-----------~a~I~sIa 387 (828)
.-|++|.|+.+|.+||||..+|+ +-+|.-..... +.|.+... |. .-+|..|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~~-------------~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLYK-------------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeecccccc-------------cceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 46899999999999999999998 56775433200 11111111 11 12378899
Q ss_pred EccCCC--EEEEEeCCCcEEEEecCCCCC
Q 003336 388 FSDDSN--WIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 388 FSpDg~--~LAs~S~DGTVhIwdl~~~gg 414 (828)
|-+++. .+..++.|.||++|.+..-+.
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~ 120 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGS 120 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeecccc
Confidence 988765 577888999999999976433
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.60 E-value=1.7 Score=52.76 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=84.8
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccc--cCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFA--EVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~--~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.-+++-|..+-+.|-|.-... ..+.+..|...|..+++.|.|.. .|.|. ...++||+.+.
T Consensus 26 ~GLiAygshslV~VVDs~s~q-~iqsie~h~s~V~~VrWap~~~p----~~llS~~~~~lliAsaD~------------- 87 (1062)
T KOG1912|consen 26 SGLIAYGSHSLVSVVDSRSLQ-LIQSIELHQSAVTSVRWAPAPSP----RDLLSPSSSQLLIASADI------------- 87 (1062)
T ss_pred cceEEEecCceEEEEehhhhh-hhhccccCccceeEEEeccCCCc----hhccCccccceeEEeccc-------------
Confidence 456777777778888876642 44566778999999999987642 34443 13455654432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCC-CCEEEEEE------cCCEEE-EEeCCEEEEEECCCCce
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-SPIYSVRC------SSRVVA-ICQAAQVHCFDAATLEI 167 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~-s~V~sV~~------S~riLA-Vs~~~~I~IwDl~t~~~ 167 (828)
.+.|.+||...+..+..|+.+ .+|..+.+ ++.+|+ +.....|.+|+..||++
T Consensus 88 --------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 88 --------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred --------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 167999999999998888874 57888887 345555 46678999999999998
Q ss_pred EEEEEcC
Q 003336 168 EYAILTN 174 (828)
Q Consensus 168 l~tL~t~ 174 (828)
.+...-.
T Consensus 148 ~Wk~~ys 154 (1062)
T KOG1912|consen 148 FWKYDYS 154 (1062)
T ss_pred eeccccC
Confidence 7776443
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.56 E-value=9.5 Score=42.39 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
-.+.|.+|+|+++|.++|..|-.|..+.+||..++ ..+-. ..-..+..++-.+++ |+++ |
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg--------------~~~~~----~~l~D~cGva~~~~~-f~~s-s 274 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG--------------RLLGS----VPLPDACGVAPTDDG-FLVS-S 274 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC--------------CEeec----cccCceeeeeecCCc-eEEe-C
Confidence 34689999999999999988888888999999887 12111 112346667777777 5544 3
Q ss_pred CCCcEEEEecCCC
Q 003336 400 SRGTSHLFAINPL 412 (828)
Q Consensus 400 ~DGTVhIwdl~~~ 412 (828)
-.|. ++.+...
T Consensus 275 G~G~--~~~~~~~ 285 (305)
T PF07433_consen 275 GQGQ--LIRLSPD 285 (305)
T ss_pred CCcc--EEEccCc
Confidence 3343 5555543
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.31 E-value=0.11 Score=57.43 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=71.2
Q ss_pred ccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 296 DADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~----~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
.+...|.|.++|++.+ .-.++---|.+.|++|..=. +++.|.+.+.+|+ |++||.+....+ .-
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~-----------~~ 336 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCK-----------KS 336 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcc-----------cc
Confidence 3557789999999875 22223335889999988766 8899999999998 999999864111 01
Q ss_pred EEEEecCCcccc-EEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 371 LYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 371 l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+.+. .||.+.. -.-+-..+....|+++++|--.+||.+..+
T Consensus 337 V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 337 VMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eeee-ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 2222 3443211 122334567778889999999999999864
No 311
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.14 Score=60.30 Aligned_cols=59 Identities=17% Similarity=0.375 Sum_probs=51.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIs-aLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
++....+|.|.|.-+. -+.+.+|+-|..+++ ++||.|||++||.|=.||+ |+|-|+..+
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~ 94 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKG 94 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCC
Confidence 4555678888888887 677888987888887 9999999999999999998 899999876
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.02 E-value=1.3 Score=51.46 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCC----EEEEEECCCCce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA----QVHCFDAATLEI 167 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~----~I~IwDl~t~~~ 167 (828)
..+.++|+.+++....+.|...-..-+|+ ++.|+.+..+ .|+++|+.+.+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 46999999999998888888777777786 5788876543 799999998773
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.87 E-value=7.3 Score=44.19 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=49.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC-CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~-pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
.+|.|..+|..+++.+.....-.. ...+... .+.+|..++.+|+ +.++|..++ +.+++.+-+
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~-l~~ld~~tG--------------~~~~~~~~~ 364 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY-LHWINREDG--------------RFVAQQKVD 364 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEEEEcC
Confidence 345677777777766544321111 1111111 2445667788897 788998876 344444322
Q ss_pred CccccEEE-EEEccCCCEEEEEeCCCcEEEEec
Q 003336 378 LTNAVIQD-ISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 378 ~t~a~I~s-IaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
.. .+.. ..+ .+..|.+++.||++..|++
T Consensus 365 ~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1221 122 2447888899999988875
No 314
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.86 E-value=0.11 Score=59.88 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=68.8
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEE
Q 003336 305 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (828)
Q Consensus 305 IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~ 384 (828)
.|.-.+...-..|.+-..|+..++|||-|++|++.-..| |.+|+-... ..+.+++ ...|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~--------------~~l~~~~----~~~V~ 75 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSK--------------AKLVRFR----HPDVK 75 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccch--------------hheeeee----cCCce
Confidence 355555555555666678999999999999999987765 789976543 1333442 34699
Q ss_pred EEEEccCCCEEEEEeCCCc---------------EEEEecCCCCCceeec
Q 003336 385 DISFSDDSNWIMISSSRGT---------------SHLFAINPLGGSVNFQ 419 (828)
Q Consensus 385 sIaFSpDg~~LAs~S~DGT---------------VhIwdl~~~gg~~~~~ 419 (828)
.+.|||.++||.+-+..+. +.|||+..+.-..++.
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~ 125 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN 125 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc
Confidence 9999999999999887655 8899997653333443
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.81 E-value=12 Score=40.86 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCC
Q 003336 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~ 353 (828)
-...|-.|+.||||++||+....|. |-+|++..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCe-EEEEecCc
Confidence 3467999999999999999999998 89999865
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=93.60 E-value=0.068 Score=57.16 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=63.1
Q ss_pred CeEEEEECCCCcEE-EEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVI-AQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i-~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
+..++|+++-.+.+ ...++- ..|++++-+|- ..++++|+.||- +-|||.+... .. ..++. .+
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~-~p----------~S~l~---ah 222 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVA-MP----------VSLLK---AH 222 (319)
T ss_pred cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCe-EEEEEccccc-ch----------HHHHH---Hh
Confidence 45566776543321 111222 34999999995 556677777775 8999998751 00 11122 22
Q ss_pred ccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003336 379 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~ 411 (828)
.+.|+.|-|.| ++..|.++|.||.+--||-++
T Consensus 223 -k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 -KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 25699999998 888999999999999999874
No 317
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.47 E-value=0.2 Score=40.21 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=28.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.+.|..++|+|...+||.++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.43 E-value=0.13 Score=61.20 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=74.8
Q ss_pred ccccCCCCeEEEEECCCCc---------------EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCC
Q 003336 294 FPDADNVGMVIVRDIVSKN---------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 358 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~---------------~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~ 358 (828)
++.++.+|.++|..+.+.. .-.++.+|...|.-+.|+-.-+.|-|...+|- |.||=+..+ .+.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmlykg-sW~ 106 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLYKG-SWC 106 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeeecc-cHH
Confidence 3556788999988776421 23467899999999999999999999999996 889988775 111
Q ss_pred CCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 359 ~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
+.... .| ....|.+++|..||+.|++.-.||.|.|=.+
T Consensus 107 ----------EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 107 ----------EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ----------HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 11111 12 2345999999999999999999998765443
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.3 Score=59.08 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=67.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
|+-+...|.|.+.+... .+ .+...|... +-+|.++||||.||+ +.|..+.+. ...+.+.
T Consensus 52 ~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~------------~~~~~~d 110 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD------------DEITQYD 110 (846)
T ss_pred eeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC------------ccceeEe
Confidence 34466789999998763 33 455556544 789999999999998 678887765 2235567
Q ss_pred EecCCccccEEEEEEccC-----CCEEEEEeCCCcEEEEecCC
Q 003336 374 LQRGLTNAVIQDISFSDD-----SNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpD-----g~~LAs~S~DGTVhIwdl~~ 411 (828)
++| .|.+|+|+|| ++.+++|+..| +-++.-+=
T Consensus 111 f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w 147 (846)
T KOG2066|consen 111 FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW 147 (846)
T ss_pred cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhh
Confidence 765 4889999998 78899999998 77776443
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.31 E-value=1.1 Score=47.07 Aligned_cols=97 Identities=25% Similarity=0.296 Sum_probs=58.8
Q ss_pred eEEEEECCCCcEEEEecc-----CCCCeEEEEEcCCCCEEEEEecCCCE-----EEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 302 MVIVRDIVSKNVIAQFRA-----HKSPISALCFDPSGILLVTASVQGHN-----INIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~a-----H~~pIsaLaFSPdG~lLATaS~DGt~-----I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
.+.++|..+++....+.. .....+.++++|+|.+.+|-+..... =+||.+.+. +....
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~- 128 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTV- 128 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEE-
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEE-
Confidence 345669888854333332 23457889999999999987754210 134544432 01122
Q ss_pred EEEecCCccccEEEEEEccCCCEEE-EEeCCCcEEEEecCCCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LA-s~S~DGTVhIwdl~~~gg 414 (828)
+..+. ..-+.|+|+||++.|. +-+..+.|..|++...+.
T Consensus 129 --~~~~~--~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 129 --VADGL--GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp --EEEEE--SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred --EecCc--ccccceEECCcchheeecccccceeEEEecccccc
Confidence 21222 2368999999999765 667788999999976554
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.28 E-value=0.2 Score=59.66 Aligned_cols=102 Identities=10% Similarity=0.160 Sum_probs=75.1
Q ss_pred cCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 297 ADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~-~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+...|.|.+|.-..+.... ...+-.+.+..++.|++..+.|.|+..|. |-||.+....+ ..+..+.
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p------------~~~~~~t 117 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP------------RDLDYVT 117 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC------------Ccceeec
Confidence 4567899999877665322 23334456777889999999999998887 88998876411 1122333
Q ss_pred cCCc--cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 376 RGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 376 RG~t--~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+++. ...|++++||+|++.|.+|-+.|+|++-.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 4443 34599999999999999999999999988876
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.99 E-value=11 Score=44.41 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=40.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-------E--EEEEE-c-CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSP-------I--YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~-------V--~sV~~-S-~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.-.|++||+.+.+.+.... + ..+.. . .++++...++.|+.+|+.|++.+.+...
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5677889999998887765332 1 11223 3 4555556789999999999999888754
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.42 E-value=13 Score=42.00 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCCCcE--EEEeccC-------C---CCeEEEEEcCCCCEEEEEec---C------CCEEEEEeCCCCCC
Q 003336 298 DNVGMVIVRDIVSKNV--IAQFRAH-------K---SPISALCFDPSGILLVTASV---Q------GHNINIFKIIPGIL 356 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~--i~~f~aH-------~---~pIsaLaFSPdG~lLATaS~---D------Gt~I~IWdi~~~~~ 356 (828)
...|.|+--|+....+ ...+..- . +.-.-+++++....|..--. + |+-|-+||+.++
T Consensus 202 Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-- 279 (342)
T PF06433_consen 202 SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-- 279 (342)
T ss_dssp BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--
T ss_pred ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--
Confidence 4567787777765432 2222211 0 22345778764443333211 1 334677777765
Q ss_pred CCCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEE-eCCCcEEEEecCCCCCceeec
Q 003336 357 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMIS-SSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 357 ~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~-S~DGTVhIwdl~~~gg~~~~~ 419 (828)
+++.++.- ...|.+|+.|.|.+ +|.+. ..++++.|||..++.....+.
T Consensus 280 ------------krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 280 ------------KRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ------------EEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ------------eEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 55555532 23478999999888 44343 457999999999865555554
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.37 E-value=14 Score=47.21 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec---CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~---DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..|+|||-. +..-.+=..-..-=.+|+|-|+|.++|+--. |+. |.+|.-. | ..+--+.++.-
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffErN-G------------L~hg~f~l~~p 286 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFERN-G------------LRHGEFVLPFP 286 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEecC-C------------ccccccccCCc
Confidence 689999977 3221111111222357999999999998533 334 6677532 2 11112334333
Q ss_pred CccccEEEEEEccCCCEEEEEe---CCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISS---SRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S---~DGTVhIwdl~~~ 412 (828)
.....|..++|+.++..||+-. ...-|.+|-+..|
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3323389999999999999833 3344999988765
No 325
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.31 E-value=0.33 Score=56.59 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC-
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR- 401 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D- 401 (828)
.=+.+.|||-|+||+|==..| |.+|--... .++.+| .+ ..|+-|.|||..+||++=|.-
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G--I~lWGG~~f--------------~r~~RF---~H-p~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG--IALWGGESF--------------DRIQRF---YH-PGVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred eeeeEEecCCceEEEEEeccc--eeeecCccH--------------HHHHhc---cC-CCceeeecCCccceEEEecCCc
Confidence 446799999999999988777 679953321 222333 22 249999999999999987642
Q ss_pred ----------CcEEEEecCCCCCceeeccCCCCCCcccCCCCccceecCCCC
Q 003336 402 ----------GTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL 443 (828)
Q Consensus 402 ----------GTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s 443 (828)
..+.||||.++....+|.... .+.+.-+++||+-.-
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------SPYLKWPIFRWSHDD 317 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceeccC------CCccccceEEeccCC
Confidence 468999999876666665431 134455677777553
No 326
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.18 E-value=0.3 Score=53.37 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=70.7
Q ss_pred cccccCCCCeEEEEECCCCc----------------EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKN----------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL 356 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~----------------~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~ 356 (828)
+|.-....|.|+|-|++... .+.-|..-.+.|+.+.|+++|+++++-+.- .++|||....
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~-- 311 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMA-- 311 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccc--
Confidence 45555678999999997311 112233445789999999999999986654 4899999764
Q ss_pred CCCCccCCCCceeEEEEE--ecC--------CccccE---EEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 357 GTSSACDAGTSYVHLYRL--QRG--------LTNAVI---QDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 357 ~~~~~~~~~~~~~~l~~L--~RG--------~t~a~I---~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
...+.+. +.. ..+..| ..|.||-|.+.+.+||-....-||...+.
T Consensus 312 -----------k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 312 -----------KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred -----------cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccC
Confidence 1122221 000 000112 45899999999999999999989886554
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.05 E-value=1.3 Score=53.22 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=67.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe---cCCCE-----------EEEEeCCCCC----CCC
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---VQGHN-----------INIFKIIPGI----LGT 358 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS---~DGt~-----------I~IWdi~~~~----~~~ 358 (828)
....+++.+.|..+.+.+.++.--. .-..+.|+|||+++.+.+ ..|.. +.+|++.... .|.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 4556899999999988888877543 335678999999998875 32322 2233322100 000
Q ss_pred ----CC----ccCCCC----ceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCC
Q 003336 359 ----SS----ACDAGT----SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (828)
Q Consensus 359 ----~~----~~~~~~----~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~g 413 (828)
.. .-+... ....++.+.-| .....|.+||||+++.+++ .+.||.|.|+.+..
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 00 000000 00122222222 2256899999999988776 48999999998854
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.03 E-value=0.5 Score=55.60 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=47.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
.++-+..||.|++||...+. .++..+.-..+.++|+|+|.+++.|+..|. |.+||+.-.
T Consensus 273 kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred eEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 35567899999999987763 333344456788999999999999999998 899999865
No 329
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.82 E-value=0.59 Score=37.51 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
.+|.+++|+|...+||.++.+|. |.|+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 57999999999999999999998 889988
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.50 E-value=0.15 Score=62.03 Aligned_cols=103 Identities=12% Similarity=0.198 Sum_probs=80.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCC-EEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt-~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
+++-+...|.|+++++.+|.......+|.++|+-|.=+.||.++.|.|.-.. ...+|++... ++ .+|
T Consensus 1115 hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-------~~----~~H- 1182 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-------GG----PRH- 1182 (1516)
T ss_pred eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-------cC----ccc-
Confidence 5666788999999999999999999999999999999999998888665433 4568987642 11 123
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.++ + =.++.||...++-+.|+....++|||+.+...
T Consensus 1183 -sf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1183 -SFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred -ccc-c-----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 331 1 24688999888888999999999999988543
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.09 E-value=0.39 Score=58.32 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.|.|| +++|++-....- .-.+++|||.|.--+||.+=..|- +.+|...+. ...++.-.+
T Consensus 39 r~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~---------------e~htv~~th 100 (1416)
T KOG3617|consen 39 RGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT---------------ETHTVVETH 100 (1416)
T ss_pred CCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccce-eEEEecCCc---------------eeeeeccCC
Confidence 45778887 345655332211 012456999999999999988886 899987653 222333333
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
++.|+-+.|||||..|+++..-|.+|+|.+.-.|..
T Consensus 101 -~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 101 -PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred -CCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 467999999999999999999999999999866444
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.93 E-value=0.64 Score=52.05 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=45.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc----CCEEEEEe-CCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQ-AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S----~riLAVs~-~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|-+||++|++.|..+....++.+|..+ +.++++.. ++.+.|||+.|++.++++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 78999999999999999998889899997 34556654 57899999999999999865
No 333
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=0.67 Score=57.81 Aligned_cols=99 Identities=14% Similarity=0.333 Sum_probs=59.7
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 296 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
-+..-|.|-..|.... .+...=..-.+||++++|+.||++|+.|=.+|. |.+||+..+ ..-++.+.
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~------------k~l~~i~e 170 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRA------------KILKVITE 170 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCC------------cceeeeee
Confidence 3445567777776542 221111122479999999999999999999998 899999875 12233333
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
. |.....|.-+-+..++..+.++...|. +|.+.
T Consensus 171 ~-~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 171 H-GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred c-CCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 2 211111333444445556666666665 56553
No 334
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=89.83 E-value=0.32 Score=54.69 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=50.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 293 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
++.+++.|+.|+|-....--.+..|. +|+.-|+.|+.-++ .+|++||.|+| +++||+..+
T Consensus 165 ~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sg 225 (390)
T KOG3914|consen 165 FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSG 225 (390)
T ss_pred EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccC
Confidence 45678899999997777766777776 79999999998655 45999999998 899999987
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.82 E-value=15 Score=42.89 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|.+|+..+.+ .|.+||+.++ ..+.++. ...|..|.||+|++++|..+.+ ++.|++.+.
T Consensus 117 G~LL~~~~~~--~i~~yDw~~~--------------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWETG--------------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETT--EEEEE-TTT----------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCC--CEEEEEhhHc--------------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 9999888776 4899999875 3333432 2238899999999999999866 777877653
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.31 E-value=1 Score=50.46 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.+.+.|+|+.+++....... ...+....|||||+.||-... +.|.++++..+.... .+.+... ... -|..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~-lT~dg~~--~i~----nG~~ 91 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQ-LTTDGEP--GIY----NGVP 91 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEE-SES--TT--TEE----ESB-
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEE-eccccce--eEE----cCcc
Confidence 35799999999765443333 567889999999999999874 358888876541000 0000000 000 0100
Q ss_pred --------cccEEEEEEccCCCEEEEEeCC-CcEEEEecCCC
Q 003336 380 --------NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 412 (828)
Q Consensus 380 --------~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~ 412 (828)
-..-..+-|||||++||....| ..|+.+.+..+
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 0001347799999999987654 55666666544
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=1.5 Score=50.36 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCCCeEEEEECCCCc-EEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCC-CceeEEEEE
Q 003336 298 DNVGMVIVRDIVSKN-VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG-TSYVHLYRL 374 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~-~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~-~~~~~l~~L 374 (828)
-.+|.|.|+|-.... ++..|+ -|.+||.++..+|.|....+....|- |.-|.......-.-..-.++ ..-.-||.+
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCccccccccccccchhhcc
Confidence 356789999976543 344444 79999999999999999999888885 89998774100000000000 001123333
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
.+- .....++.|||+|..+++-+.|.+|++|++.++.-
T Consensus 198 ~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 198 PKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccc--ccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 221 12378999999999999999999999999976533
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.68 E-value=9.8 Score=40.51 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=36.8
Q ss_pred EEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 131 HMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 131 ~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.+|++.+.+.++.+...+|.+..++.|.||++.++++++++..
T Consensus 223 ~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 223 STIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 3778888888999987777777778899999999999999865
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=88.39 E-value=5.7 Score=49.44 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=45.3
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
|+++-++.+|.||+||-...+....|++-..||..|..+.||++|+.... +.+.|+++.
T Consensus 589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 35566788999999996655556678888899999999999997655443 246788864
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.23 E-value=14 Score=39.40 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCCEEEEEECCCC-----cEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCce
Q 003336 115 VPTVVHFYSLRSQ-----SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEI 167 (828)
Q Consensus 115 ~~~tVrlWDL~Tg-----~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~~ 167 (828)
..++|.+|..... +.++++..+..+.+|.|.++.|+++..+...+.|+.++..
T Consensus 112 ~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 112 VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCc
Confidence 4568999887653 5788889999999999999999999999999999998764
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.87 E-value=1.7 Score=50.34 Aligned_cols=96 Identities=26% Similarity=0.393 Sum_probs=61.7
Q ss_pred CeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEe-cCCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 301 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS-VQGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 301 G~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSPdG~lLATaS-~DGt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
..+.++|+.+++ .+..+.++.. .-+|+|||+.||-++ .||. .|.+.|+... .+.+|..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~---------------~~~~Lt~ 279 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGK---------------NLPRLTN 279 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCC---------------cceeccc
Confidence 468999998865 4555666654 457999999877544 4554 2444455443 1223333
Q ss_pred CCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCce
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSV 416 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg~~ 416 (828)
+... -..=+|||||++|+-.|++ |.-.||-++..++.+
T Consensus 280 ~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 280 GFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 3221 1256799999999987765 567888888776655
No 342
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.62 E-value=1.4 Score=53.19 Aligned_cols=108 Identities=11% Similarity=0.203 Sum_probs=75.2
Q ss_pred eEEEEECCC---CcEEEEeccCCCCeEEEEEcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 302 MVIVRDIVS---KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 302 ~V~IwDl~s---~~~i~~f~aH~~pIsaLaFSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
.-.||.+.. ..+-..+.+|+..|+.+.|.|.- -.|||+|.|-. ++.||++.. ...+|.+.--
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp-------------~~p~ys~~~w 157 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSP-------------HRPFYSTSSW 157 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCC-------------Ccceeeeecc
Confidence 345677653 23334456999999999999965 48999999965 899999874 1334444322
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce-eeccCCCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANF 425 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~-~~~~H~~~~ 425 (828)
++. -..|.|+.-.-.+.+.+..+-|.|||+..++-+. ++++|....
T Consensus 158 ~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 158 RSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred ccc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee
Confidence 222 3468898755566667788899999998866654 678877543
No 343
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.50 E-value=1.2 Score=35.13 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCC---CEEEEEecCCCEEEEEeCCCC
Q 003336 322 SPISALCFDPSG---ILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 322 ~pIsaLaFSPdG---~lLATaS~DGt~I~IWdi~~~ 354 (828)
+.|.+++|||+. .+||.+-..|. |+|+|++..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence 468999999854 49999888887 899999853
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.20 E-value=5.7 Score=37.78 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=45.3
Q ss_pred eEEEEEcC---CCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 324 ISALCFDP---SGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 324 IsaLaFSP---dG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
|++|++.. ||. -|+.||.|.. ||||+-.. .++++.. ...|.+++=... ..++.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e----------------~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE----------------IVAEITE---TDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc----------------EEEEEec---ccceEEEEEcCC-CEEEEEe
Confidence 56666544 443 7999999976 99998543 4455532 234777877666 5688999
Q ss_pred CCCcEEEEec
Q 003336 400 SRGTSHLFAI 409 (828)
Q Consensus 400 ~DGTVhIwdl 409 (828)
..|||-||+-
T Consensus 61 ~NGTVGvY~~ 70 (111)
T PF14783_consen 61 ANGTVGVYDR 70 (111)
T ss_pred cCCEEEEEeC
Confidence 9999887765
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.18 E-value=64 Score=37.31 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEEeCCEEEEEECC
Q 003336 116 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAA 163 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~-s~V~sV~~S--~riLAVs~~~~I~IwDl~ 163 (828)
|..|+||+. +|+.+.++.++ ..|..+.|+ .++|+|..++.+++||+.
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 347999998 68889999885 689999996 577888999999999986
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.95 E-value=55 Score=39.20 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=38.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
-|.+.-+|+.+++.+-.++......... +.-.|.+++.++.+|. ++.+|..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~-l~a~D~~TG 492 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGY-FKAFDAKTG 492 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCe-EEEEECCCC
Confidence 4789999999999988776433222221 2225567777888997 899999997
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.81 E-value=32 Score=40.79 Aligned_cols=59 Identities=8% Similarity=0.131 Sum_probs=43.3
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 292 g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
|.++.++.+|.|++||-...+.-..|++-..+|..|..+.||++|+..... + +-+-++.
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-y-LlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-Y-LLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-E-EEEEEEe
Confidence 345667789999999985555556788889999999999999975544332 3 5566654
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.98 E-value=4.1 Score=50.10 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=75.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEcCCCCEEEEEecCCC----EEEEEeCCCCCCCCCCccCCCCce
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~p-IsaLaFSPdG~lLATaS~DGt----~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
++-+..+|.|.+.+- +.+.+..|++|... |..|-...+-.+|++-..|+. .++||++.....++++ .+
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP------~c 110 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP------QC 110 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc------ce
Confidence 344667888877762 34566889999988 666655555578999888877 7999999875211111 11
Q ss_pred e---EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 369 V---HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 369 ~---~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
. .++.+.-+..+.++.+++.|.|-+.+|+|-.+|+|..+.=
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 2 2222222323445889999999999999999999988754
No 349
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.02 E-value=5.3 Score=48.23 Aligned_cols=96 Identities=16% Similarity=0.308 Sum_probs=66.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+.+.+|.|.||=+-.+.=...+- ..++-|.+++|+.||+.++..-.||.+ .|=.+.- .+++
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav-IVGsvdG---------------NRIw 150 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV-IVGSVDG---------------NRIW 150 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE-EEEeecc---------------ceec
Confidence 345678999999887765332222 345678999999999999888777763 3332221 1111
Q ss_pred --EEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 373 --RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 373 --~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.| .|.. ...+.||+|.+.+..+-..|.+||||..
T Consensus 151 gKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 151 GKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred chhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 12 1221 3467899999999999999999999975
No 350
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.71 E-value=17 Score=46.61 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..|.++.|--++.-+..+..+|.+ .+-|..+. .... -|.....|..++||||.+++|..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~i-ilvd~et~------------~~ei-----vg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDI-ILVDPETL------------ELEI-----VGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcE-EEEccccc------------ceee-----eeeccCceEEEeecCCCcEEEEEeCC
Confidence 478999999999999988999984 55566553 1111 13333459999999999999999999
Q ss_pred CcEEE
Q 003336 402 GTSHL 406 (828)
Q Consensus 402 GTVhI 406 (828)
+|+-+
T Consensus 131 ~tll~ 135 (1265)
T KOG1920|consen 131 QTLLF 135 (1265)
T ss_pred cEEEE
Confidence 99866
No 351
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=83.36 E-value=2 Score=47.29 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCc----cCC-CCceeEEEEEecCCccccEEEEEEccCCC--E
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA----CDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSN--W 394 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~----~~~-~~~~~~l~~L~RG~t~a~I~sIaFSpDg~--~ 394 (828)
.-|+++-|+..|.+||||...|+ +-+|.-... .+...- ++. +.....|..|. ...+|..|.|-.++. .
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s-~~ceykf~teFQshe~EFDYLkSle---ieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLE---IEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeecccc-cccchhhhhhhcccccchhhhhhcc---HHHHhhheeeecCCCcce
Confidence 46899999999999999999898 667764432 111000 000 00000000110 012378888876654 4
Q ss_pred EEEEeCCCcEEEEecCC
Q 003336 395 IMISSSRGTSHLFAINP 411 (828)
Q Consensus 395 LAs~S~DGTVhIwdl~~ 411 (828)
+..++.|.||+||.+-.
T Consensus 102 FLlstNdktiKlWKiye 118 (460)
T COG5170 102 FLLSTNDKTIKLWKIYE 118 (460)
T ss_pred EEEecCCceeeeeeeec
Confidence 77788999999999964
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=82.29 E-value=91 Score=34.95 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=40.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL 171 (828)
+.+.+||+.+++..........+....++ ++.||...++.|+++++.+.+ ...|
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~l 78 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQL 78 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEES
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC-eEEe
Confidence 67999999998755433334567777776 789999999999999998873 3344
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=82.26 E-value=1.1e+02 Score=36.01 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCE------E-EEEEcCCEEEEEe----------CCEEEEEECCCCceEEEEEcC
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPI------Y-SVRCSSRVVAICQ----------AAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V------~-sV~~S~riLAVs~----------~~~I~IwDl~t~~~l~tL~t~ 174 (828)
.+.|.-+|.+||+.+........+ . +..+...++.++. ++.++++|+.|++.+.+....
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~ 194 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT 194 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence 377899999999999988765441 1 1222234444432 468999999999998887653
No 354
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.02 E-value=24 Score=43.76 Aligned_cols=92 Identities=13% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCcc-CCCCceeE-EEE----EecCCccccEEEEEEccC---
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVH-LYR----LQRGLTNAVIQDISFSDD--- 391 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~-~~~~~~~~-l~~----L~RG~t~a~I~sIaFSpD--- 391 (828)
...|..|.+||+|++||-++..| |-|-.+... .|..+.. +......+ .+. +.+......|..+.|.|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r-~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG--VVVLELPRR-WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc--EEEEEeccc-cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 35688899999999999999987 455555321 1111111 00011111 111 112222345899999986
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCc
Q 003336 392 SNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 392 g~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
+..|++=++|+++++||+.....+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCC
Confidence 589999999999999999764443
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=21 Score=40.73 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC--CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D--Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.....|.+.|..+.+.+..+..-. .-..++|+|+|+.+..+... ...+.+.|..+. ..+.+..
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------------~~~~~~~ 157 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------------KVTATIP 157 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------------eEEEEEe
Confidence 346789999988887777665322 34568999999877666652 234777776654 2333455
Q ss_pred cCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~ 411 (828)
.|..+ ..++|+|+|+.+..+. .++++.+++...
T Consensus 158 vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 158 VGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred cCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 56533 7899999999666555 789999999543
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=1.8 Score=54.22 Aligned_cols=78 Identities=10% Similarity=0.188 Sum_probs=54.8
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC-ccccEEEEEEccCCCEEEEEeCCCcEE
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~-t~a~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
++----+..+|.++..|+ +-.+|.... |..+++|. ....|.++||+.||++++.|-.+|-|.
T Consensus 93 ~s~a~~~~~ivi~Ts~gh-vl~~d~~~n----------------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGH-VLLSDMTGN----------------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVT 155 (1206)
T ss_pred eeeeeeeeeEEEEcCchh-hhhhhhhcc----------------cchhhcCCccCCcceeeEecCCCceeccccCCCcEE
Confidence 333335678999999998 677776542 11122222 234599999999999999999999999
Q ss_pred EEecCCCCCceeeccC
Q 003336 406 LFAINPLGGSVNFQPT 421 (828)
Q Consensus 406 Iwdl~~~gg~~~~~~H 421 (828)
+||++.......+..|
T Consensus 156 v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 156 VWDMHRAKILKVITEH 171 (1206)
T ss_pred EEEccCCcceeeeeec
Confidence 9999986554444433
No 357
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.85 E-value=6.9 Score=45.36 Aligned_cols=91 Identities=18% Similarity=0.342 Sum_probs=58.5
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEE-EccC
Q 003336 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS-FSDD 391 (828)
Q Consensus 313 ~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIa-FSpD 391 (828)
....|....-.+.+|+.+|+|++.|+.+.-|+ |-|+|+..+ ...+++ +|...|.+.-+. +...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~------------~vvrmW---KGYRdAqc~wi~~~~~~ 362 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARG------------IVVRMW---KGYRDAQCGWIEVPEEG 362 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCC------------hhhhhh---ccCccceEEEEEeeccc
Confidence 33445555567889999999999999888898 789999886 222333 344444322111 1111
Q ss_pred ----------------CCEEEE-EeCCCcEEEEecCCCCCceeec
Q 003336 392 ----------------SNWIMI-SSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 392 ----------------g~~LAs-~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
..+|++ +-.+|.+-||.+..+.....++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 363 DRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 234444 6679999999998865555554
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.40 E-value=8.4 Score=46.69 Aligned_cols=100 Identities=9% Similarity=0.092 Sum_probs=56.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE--EEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY--RLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~--~L~RG~ 378 (828)
..+.+++... .....+.+. ..++-.|+|||+.|++.+......++.+-... ..++ .+.-|.
T Consensus 379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~--------------gql~~~~vd~ge 441 (591)
T PRK13616 379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT--------------GQLARTPVDASA 441 (591)
T ss_pred eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC--------------ceEEEEeccCch
Confidence 3566666532 222223333 37788999999999998765444444432211 1122 221111
Q ss_pred ----ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC-CCCceee
Q 003336 379 ----TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNF 418 (828)
Q Consensus 379 ----t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~-~gg~~~~ 418 (828)
-...|.++.|||||++||... +|.|+|=-+.. .+|...+
T Consensus 442 ~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l 485 (591)
T PRK13616 442 VASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYAL 485 (591)
T ss_pred hhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceee
Confidence 012499999999999999877 46666644433 3444443
No 359
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=80.48 E-value=4.7 Score=31.95 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.3
Q ss_pred EEEEEEccCCC---EEEEEeCCCcEEEEecCC
Q 003336 383 IQDISFSDDSN---WIMISSSRGTSHLFAINP 411 (828)
Q Consensus 383 I~sIaFSpDg~---~LAs~S~DGTVhIwdl~~ 411 (828)
|.++.|||+.. +||.+-..|-|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998554 899999999999999984
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=79.71 E-value=15 Score=44.53 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=69.7
Q ss_pred CCeEEEEECCC-----CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 300 VGMVIVRDIVS-----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 300 dG~V~IwDl~s-----~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
++.|.|.|..+ .+.+..+.--.. ...|++||||++|+.++.-...+.|.|+......-..--+....+ ..+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v--vaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV--VAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCC-ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE--EEee
Confidence 46899999998 466777764333 456899999999988877555599999987410000000000011 1222
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.-|..+ ...+|.++|+-..+-..|..|-.|++..
T Consensus 372 evGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 224332 4588999999888888999999999976
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=79.48 E-value=13 Score=42.81 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=55.8
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE--ec----CCccccEEE
Q 003336 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--QR----GLTNAVIQD 385 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L--~R----G~t~a~I~s 385 (828)
.++..+....++|++|+.|.=| ++|.|..+|+ +-|.|++-. .-+|+- +. ......|.+
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGP--------------avI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGP--------------AVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTT--------------EEEEEEEGGG--T-SS----EEE
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCC--------------eEEeeccccccccccccccCeeE
Confidence 4666677778999999998555 8999999997 789999653 334431 11 112234888
Q ss_pred EEEcc-----CC---CEEEEEeCCCcEEEEecCC
Q 003336 386 ISFSD-----DS---NWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 386 IaFSp-----Dg---~~LAs~S~DGTVhIwdl~~ 411 (828)
|.|+- |+ -.|.+|+..|++.+|.|-+
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 88873 43 4688999999999999986
No 362
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=78.82 E-value=81 Score=39.15 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCeEEEEEc--CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC---C---
Q 003336 322 SPISALCFD--PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---N--- 393 (828)
Q Consensus 322 ~pIsaLaFS--PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg---~--- 393 (828)
..+..|++. ...++||.++.. +.|.||-...... . ..+.... ...+.|-+|+|-++. .
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs-~~VTVFaf~l~~~-r---------~~~~~s~---~~~hNIP~VSFl~~~~d~~G~v 229 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNS-QEVTVFAFALVDE-R---------FYHVPSH---QHSHNIPNVSFLDDDLDPNGHV 229 (717)
T ss_pred CceeEEEEEecCcceEEEEecCC-ceEEEEEEecccc-c---------ccccccc---ccccCCCeeEeecCCCCCccce
Confidence 367789997 777777776665 4589997765300 0 0010011 123459999997644 2
Q ss_pred EEEEEeCCCcEEEEec
Q 003336 394 WIMISSSRGTSHLFAI 409 (828)
Q Consensus 394 ~LAs~S~DGTVhIwdl 409 (828)
+|++++-.|.+-+|++
T Consensus 230 ~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 230 KVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccCcEEEEEE
Confidence 8999999999999988
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.28 E-value=13 Score=45.15 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=60.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.+.+.+.++..+.... .....|+.+.|||||+.||.-. +|+ |.|=-+.....|. ........+.-+..
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~-------~~l~~~~~l~~~l~ 496 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQ-------YALTNPREVGPGLG 496 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCc-------eeecccEEeecccC
Confidence 4566666776655433 3346799999999999988766 455 5553222210000 01111122322222
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
. .+.+++|..|+.++ ++..++...+|.++-.|....
T Consensus 497 ~-~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 497 D-TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred C-ccccceEecCCEEE-EEecCCCCceEEEecCCcccc
Confidence 1 25789999999955 666677777888876655433
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.88 E-value=13 Score=42.18 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCEEEEE-ecCCC---EEEEEeCCCCCCCCCCccCCCCceeEEE-EEecCCccccEEEEEEccCCCEEEE
Q 003336 323 PISALCFDPSGILLVTA-SVQGH---NINIFKIIPGILGTSSACDAGTSYVHLY-RLQRGLTNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 323 pIsaLaFSPdG~lLATa-S~DGt---~I~IWdi~~~~~~~~~~~~~~~~~~~l~-~L~RG~t~a~I~sIaFSpDg~~LAs 397 (828)
.+...++||||++||-+ +..|. .|+|+|+.++ ..+- .+. ......++|++|++.|..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------------~~l~d~i~----~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------------KFLPDGIE----NPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------------EEEEEEEE----EEESEEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------------cCcCCccc----ccccceEEEeCCCCEEEE
Confidence 45578999999998855 44443 5899999886 2221 221 112234999999998877
Q ss_pred EeCCCc-----------EEEEecCCC
Q 003336 398 SSSRGT-----------SHLFAINPL 412 (828)
Q Consensus 398 ~S~DGT-----------VhIwdl~~~ 412 (828)
...+.. |..|++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred EEeCcccccccCCCCcEEEEEECCCC
Confidence 765542 566666554
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=76.43 E-value=57 Score=31.13 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=60.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
++.++.|..||||+-. ..+..+..+ ..|++|+-... ..++.|-..|| |-||+-. .++++
T Consensus 18 LlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~----------------~RlWR 76 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS----------------QRLWR 76 (111)
T ss_pred EEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc----------------ceeee
Confidence 4567789999999854 577777654 46777766665 56999999998 8999754 34566
Q ss_pred EecCCccccEEEEEEcc---CCC-EEEEEeCCCcEE
Q 003336 374 LQRGLTNAVIQDISFSD---DSN-WIMISSSRGTSH 405 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSp---Dg~-~LAs~S~DGTVh 405 (828)
.+.. ..+.++++.. ||. -|++|-++|.|-
T Consensus 77 iKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5432 2356665543 333 577888888764
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.25 E-value=1.5e+02 Score=34.17 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCC
Q 003336 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAA 155 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~~~ 155 (828)
.++.|.-.|++||+.-..+.-+..+--+.|+ ..+|+-|.++
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 4688888899999976666667778888887 4677778654
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.74 E-value=63 Score=40.06 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=27.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS 145 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S 145 (828)
++|.|-++-+.+..+++.|..++.+|++.
T Consensus 93 Gkv~I~sl~~~~~~~~~df~rpiksial~ 121 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYDFKRPIKSIALH 121 (846)
T ss_pred CcEEEeeccCCccceeEecCCcceeEEec
Confidence 77999999999999999999999999995
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=75.57 E-value=6.3 Score=41.95 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEE-EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISAL-CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~-f~aH~~pIsaL-aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
++.+..+|.|.+|...-...... +..-..+|.++ .--.++.+..++..+|. ||-|.+.++ +++
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~--------------k~~ 137 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN--------------KVL 137 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC--------------cee
Confidence 44567889999987762111111 11112344443 22346678889999987 899999886 222
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEE--eCCCcEEEEecCCCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMIS--SSRGTSHLFAINPLGG 414 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~--S~DGTVhIwdl~~~gg 414 (828)
-. .-+++...+.....+..+++|+++ |.|.+++.|++.+...
T Consensus 138 g~-~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 138 GY-VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ee-eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 11 122332446666667777788888 8888888888876533
No 369
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.37 E-value=16 Score=35.93 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCEEEEEEc-------CCEEEEEeCCEEEEEECCCCceEEE
Q 003336 126 SQSYVHMLKFRSPIYSVRCS-------SRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 126 Tg~~V~tL~f~s~V~sV~~S-------~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
+...+..|++...|.+|+.. ...|.++....+.+||+..-..++.
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 45678889999999998773 5789999999999999987655444
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.79 E-value=22 Score=40.39 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCC----------CEEEEEeCCCCCCCCCCccCCCC
Q 003336 298 DNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DG----------t~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
+..-.++|+|+.+++.+.. |..- .-..++|.+||+.|+....+. +.|..|++.+. ..
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~----------~~ 214 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP----------QS 214 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-----------GG
T ss_pred CceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC----------hH
Confidence 4446899999999987653 2321 123399999999877665433 23556666543 01
Q ss_pred ceeEEEEEecCCcccc-EEEEEEccCCCEEEEEeCCCc----EEEEecCC
Q 003336 367 SYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGT----SHLFAINP 411 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAs~S~DGT----VhIwdl~~ 411 (828)
....+|.-. .... ..++..|+|++||++.+..++ +++.++..
T Consensus 215 ~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 215 EDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp G-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred hCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 123444432 2233 678999999999887665543 44455543
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=74.42 E-value=23 Score=44.34 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=60.5
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEc-------CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFD-------PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~p-IsaLaFS-------PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
+......|.-.|+..|++|..++.|... |..++=+ +..++|.. .+.. +.-||.+-. ++ .
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl--s~n~-lfriDpR~~--~~--------k 565 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL--SDNS-LFRIDPRLS--GN--------K 565 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE--CCCc-eEEeccCCC--CC--------c
Confidence 3345678899999999999999988753 6554321 23333333 3333 556776643 11 1
Q ss_pred ee--EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 368 YV--HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 368 ~~--~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
+. ..+...+ ....+|++=+.+| +||+||.+|-|++||
T Consensus 566 ~v~~~~k~Y~~---~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 566 LVDSQSKQYSS---KNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred eeecccccccc---CCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 11 1111222 2347888888887 789999999999998
No 372
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=73.53 E-value=20 Score=40.30 Aligned_cols=114 Identities=11% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCC---------CCC-c--------cCCCC----
Q 003336 309 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG---------TSS-A--------CDAGT---- 366 (828)
Q Consensus 309 ~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~---------~~~-~--------~~~~~---- 366 (828)
..-..++...+|..+|.++-|+-.-+++++++.|.. + .|-......+ .+. . ++-.+
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~-~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ-F-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-e-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 334456667789999999999998899888888855 3 4432211000 000 0 01111
Q ss_pred ------ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce-eeccCCCCCC
Q 003336 367 ------SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFT 426 (828)
Q Consensus 367 ------~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~-~~~~H~~~~~ 426 (828)
.+..++++ +|++. .|.+++|.+..+.|.++..|-.+.+|||--..+.. -+++|.+...
T Consensus 180 lr~~~~~~~~i~~~-~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 180 LKLEQNGCQLITTF-NGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEEeecCCceEEEE-cCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 11223344 46553 59999999999999999999999999997665553 5677776543
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.35 E-value=34 Score=39.94 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=55.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCC-C-CeEEEEEc--CCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHK-S-PISALCFD--PSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~-~-pIsaLaFS--PdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
.+.....+.+||+.+.+.+++|.--. + -...|.|- |+..+=.++.. ..++.++|....+ . + ..++
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~-------W--~a~k 286 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-E-------W--AAEK 286 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-E-------E--EEEE
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-C-------e--eeeE
Confidence 33455689999999999999987322 2 24467775 55555444333 3333444433322 0 1 1122
Q ss_pred EEEEec---------------CCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC
Q 003336 371 LYRLQR---------------GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (828)
Q Consensus 371 l~~L~R---------------G~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg 414 (828)
+.++.- +..+.-|.+|..|.|.+||-.++ .+|.|+.|||+....
T Consensus 287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 222210 11123489999999999998766 799999999987543
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.66 E-value=92 Score=34.20 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCE--EE-EEEcCCEEE-EEeCCEEEEEECCCCceEEEEE
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPI--YS-VRCSSRVVA-ICQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V--~s-V~~S~riLA-Vs~~~~I~IwDl~t~~~l~tL~ 172 (828)
.+.+.|.+.+||+....+.--..| .+ +++++.++= .+.+++.+..|..+..++++.+
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 477999999999877766543333 22 455666554 4778899999999999998864
No 375
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.14 E-value=12 Score=27.89 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=20.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCC--CEEEEE
Q 003336 320 HKSPISALCFDPSGILLVTASVQG--HNINIF 349 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DG--t~I~IW 349 (828)
......+.+|||||+.|+-++... ....||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344667889999999888776653 225555
No 376
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.98 E-value=5.1 Score=49.52 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=65.2
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC
Q 003336 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 391 (828)
+...+|+.|+...+|++|+-+-..|+.|+-.|. |+||++.+|.. .--+. +|. +.|+-|.=|-|
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge-ik~~nv~sG~~------------e~s~n---cH~-SavT~vePs~d 1154 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE-IKIFNVSSGSM------------EESVN---CHQ-SAVTLVEPSVD 1154 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccce-EEEEEccCccc------------ccccc---ccc-cccccccccCC
Confidence 567889999999999999999999999999998 89999988711 10011 222 34777777889
Q ss_pred CCEEEEEeCCC--cEEEEecCCCCCc
Q 003336 392 SNWIMISSSRG--TSHLFAINPLGGS 415 (828)
Q Consensus 392 g~~LAs~S~DG--TVhIwdl~~~gg~ 415 (828)
|..+.+.|.-. -.-+|++...++.
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCc
Confidence 98877765443 4789999875554
No 377
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=70.74 E-value=8.1 Score=47.61 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=47.3
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
.+-.-|.+.+|...+.+.-..-..|..+|.-|.|||||+.|+|+..-|- +++|..+
T Consensus 76 ~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred hccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 3445688999998887765555689999999999999999999999986 8999876
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=70.31 E-value=44 Score=40.83 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCeEEEEECCCCcEEE--EeccCCCCeEEEEE--cCCCCEEEEEecCCCEEEEEeCCCC-CCCCCCccCCCCceeEEEEE
Q 003336 300 VGMVIVRDIVSKNVIA--QFRAHKSPISALCF--DPSGILLVTASVQGHNINIFKIIPG-ILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~--~f~aH~~pIsaLaF--SPdG~lLATaS~DGt~I~IWdi~~~-~~~~~~~~~~~~~~~~l~~L 374 (828)
.-.+.|||...+.... .| ....+|..|.| .|||+.+.+-+...+ |.|+--... +....+. + ...+. ..+
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~--w-~~i~~-i~i 123 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPS--W-APIRK-IDI 123 (631)
T ss_pred CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcc--c-ceeEE-EEe
Confidence 3489999998876322 23 34678999987 479998888888876 677743221 1111110 0 01222 233
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+.+|++.|.+.+|-+||.+++.+ ..-++||+-.
T Consensus 124 -~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 124 -SSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred -ecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 56787889999999999887655 4467887653
No 379
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.47 E-value=38 Score=40.14 Aligned_cols=85 Identities=11% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCcc-CCCCce--------eEEEEEecCCccccEEEEEEccCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSY--------VHLYRLQRGLTNAVIQDISFSDDS 392 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~-~~~~~~--------~~l~~L~RG~t~a~I~sIaFSpDg 392 (828)
-.|..+..|+.|.+.|-++.+|- .|-.+... .|..+.. |....+ ..+|+- .+.-.+..++|.|++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~r-wG~~s~~eDgk~~v~CRt~~i~~~~fts---s~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGL--MVMELPKR-WGKNSEFEDGKSTVNCRTTPVAERFFTS---STSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEEecCCCceEEEecCCee--EEEEchhh-cCccceecCCCceEEEEeecccceeecc---CCceeeeeccccCCc
Confidence 45778889999999999999984 45444221 1221111 100011 122221 122237789999987
Q ss_pred ---CEEEEEeCCCcEEEEecCCC
Q 003336 393 ---NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 393 ---~~LAs~S~DGTVhIwdl~~~ 412 (828)
..|..-++|.+++||+++..
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCc
Confidence 67888899999999999874
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=68.95 E-value=74 Score=36.28 Aligned_cols=94 Identities=15% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE-----
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR----- 373 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~----- 373 (828)
..+.|.+.|..+.+.+..+..-..| ..++|+|+|+.+..+..+...|.++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---------------~v~~~~~~~ 201 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN---------------SVVRGSVGS 201 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc---------------ceecccccc
Confidence 3578999999999988886654456 789999999966665544344889996543 1111
Q ss_pred -EecCCccccEEEEEEccCCCEEEEEeCC---CcEEEEecCC
Q 003336 374 -LQRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINP 411 (828)
Q Consensus 374 -L~RG~t~a~I~sIaFSpDg~~LAs~S~D---GTVhIwdl~~ 411 (828)
...+.. -..+.++|||+++-+.-.. +++-+.|..+
T Consensus 202 ~~~~~~~---P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 202 LVGVGTG---PAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred ccccCCC---CceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 111111 3578999999976555443 3666666554
No 381
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.76 E-value=10 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.8
Q ss_pred cEEEEEEccCCCEEEEEeCC---CcEEEE
Q 003336 382 VIQDISFSDDSNWIMISSSR---GTSHLF 407 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~D---GTVhIw 407 (828)
.....+|||||++|+-++.. |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 36778999999999987765 677776
No 382
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=61.30 E-value=54 Score=33.07 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=25.7
Q ss_pred cEEEEEEccCC------CEEEEEeCCCcEEEEecCCC
Q 003336 382 VIQDISFSDDS------NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 382 ~I~sIaFSpDg------~~LAs~S~DGTVhIwdl~~~ 412 (828)
.|..++|||-| -.||+-+.++.+.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 58899999943 47999999999999987643
No 383
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=60.19 E-value=1.6e+02 Score=32.56 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=34.4
Q ss_pred EEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 131 HMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 131 ~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
..|.+...+.++++...+|.+..+.-|.|+++.+++.++++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 3567778888888886666666678899999999998888853
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.15 E-value=19 Score=42.08 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=36.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
.....++.|.+||+.+++.++.+... +|..|-||++|+++|-.+.+. |.|++..
T Consensus 120 L~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~~~ 173 (443)
T PF04053_consen 120 LGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILKYN 173 (443)
T ss_dssp EEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEEE-
T ss_pred EEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEEec
Confidence 33345568999999999999999754 589999999999999999884 5666543
No 385
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=57.18 E-value=3.8 Score=48.98 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=63.0
Q ss_pred CCCeEEEEECCCC--cE--EEEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 299 NVGMVIVRDIVSK--NV--IAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 299 ~dG~V~IwDl~s~--~~--i~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.+-.+.|||+.++ .+ -..|.+ -......+|+..+-+++.+|..... ++|||++-.+. ....
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~-~~ifdlRqs~~-------------~~~s 192 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS-VHIFDLRQSLD-------------SVSS 192 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch-hhhhhhhhhhh-------------hhhh
Confidence 4567999999886 22 234444 3345678999999999999888754 89999984311 0001
Q ss_pred EecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 003336 374 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl 409 (828)
+ ...-++.+..+| ...|+|+-+ ||-|-|||.
T Consensus 193 v----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 193 V----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred h----hhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 1 111266777888 778888776 999999993
No 386
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=56.40 E-value=3.9 Score=48.89 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=68.8
Q ss_pred cCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcC-CCCEEEEEecC---CCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 297 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP-SGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~--i~~f~aH~~pIsaLaFSP-dG~lLATaS~D---Gt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
|...|.|.+-.+....- -....+|..+.++++|++ |...||.|=++ ...+.|||+.+..... ..
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP----------ke 145 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP----------KE 145 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC----------cc
Confidence 44568888877665432 234567888999999998 67778776322 1248899998751100 00
Q ss_pred EEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
-..|..+ +-....++||-.|-+.|.+|...+.+||||+.
T Consensus 146 ~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 146 SPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred ccccccc-cccCccccccccCcchhhcccccchhhhhhhh
Confidence 0112111 11225689999999999999999999999997
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.96 E-value=1.5e+02 Score=33.17 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=39.3
Q ss_pred EEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEe--CCEEEEEECCCCceEEEEEc
Q 003336 119 VHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQ--AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 119 VrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVs~--~~~I~IwDl~t~~~l~tL~t 173 (828)
+-.++. .|+++..+..+..-..|.++ ++-|+++- ...-.+||..+.+.+.++..
T Consensus 51 ~a~~~e-aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 51 AATLSE-AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred EEEEcc-CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 334443 58899999888888889996 55555542 23588999999988877754
No 388
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.35 E-value=68 Score=35.17 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=58.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+...|.+.+.+..++..+..|..-..-=..-..++||.++-.+|.||+ ++..|..+. .++|+++-
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~-~yalD~~~~--------------~cVykskc 133 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGN-FYALDPKTY--------------GCVYKSKC 133 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCc-EEEeccccc--------------ceEEeccc
Confidence 456788999999999888877754332223457899999999999998 788887764 56788765
Q ss_pred CCccccEEEEEEcc-CCCEEEEE
Q 003336 377 GLTNAVIQDISFSD-DSNWIMIS 398 (828)
Q Consensus 377 G~t~a~I~sIaFSp-Dg~~LAs~ 398 (828)
|-. ...+=+..| |+.+.++.
T Consensus 134 gG~--~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 134 GGG--TFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred CCc--eeccceecCCCceEEEEe
Confidence 543 133445555 55544443
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=54.81 E-value=1.1e+02 Score=33.00 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEe-CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC-
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFK-IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS- 400 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWd-i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~- 400 (828)
.++.-+|+++|.+.+....+.. .+++. ...+ ... ...+.-......|.++.+||||..+|....
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g------------~~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~ 132 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASG------------TGE-PVEVDWPGLRGRITALRVSPDGTRVAVVVED 132 (253)
T ss_pred ccccccccCCCCEEEEEcCCCc-eEEEEecCCC------------cce-eEEecccccCCceEEEEECCCCcEEEEEEec
Confidence 6788899999998877766554 56664 2222 001 111111111116999999999999998873
Q ss_pred --CCcEEEEecCC
Q 003336 401 --RGTSHLFAINP 411 (828)
Q Consensus 401 --DGTVhIwdl~~ 411 (828)
++.+.|=-|..
T Consensus 133 ~~~~~v~va~V~r 145 (253)
T PF10647_consen 133 GGGGRVYVAGVVR 145 (253)
T ss_pred CCCCeEEEEEEEe
Confidence 46677766654
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.05 E-value=5.6e+02 Score=32.43 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE---------EEE-------------------EcCCEEEEEeCCEEEEEECCCCceE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIY---------SVR-------------------CSSRVVAICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~---------sV~-------------------~S~riLAVs~~~~I~IwDl~t~~~l 168 (828)
+.|.=.|.+||+.+..+.....+. .+. |.+++++.+.+++++..|+.|++.+
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 667778999999998887643321 111 2236666678999999999999988
Q ss_pred EEEEc
Q 003336 169 YAILT 173 (828)
Q Consensus 169 ~tL~t 173 (828)
..+..
T Consensus 284 W~fg~ 288 (764)
T TIGR03074 284 EDFGN 288 (764)
T ss_pred EEecC
Confidence 76643
No 391
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=52.69 E-value=1.6e+02 Score=31.87 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=46.3
Q ss_pred eccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEE
Q 003336 317 FRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 395 (828)
Q Consensus 317 f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 395 (828)
+.+-...|+.|+|+|+.. ++|.....+. |...+.. + .....+.| .| ....-+|++.-+++++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~~-G------------~vlr~i~l-~g--~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSLD-G------------KVLRRIPL-DG--FGDYEGITYLGNGRYV 79 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEETT---------------EEEEEE--SS---SSEEEEEE-STTEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcCC-C------------CEEEEEeC-CC--CCCceeEEEECCCEEE
Confidence 344445699999999755 5555555554 5455542 2 23333444 23 2458899999888777
Q ss_pred EEEeCCCcEEEEecCCCCC
Q 003336 396 MISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 396 As~S~DGTVhIwdl~~~gg 414 (828)
++.-.++++.++++...+.
T Consensus 80 l~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp EEETTTTEEEEEEE----T
T ss_pred EEEcCCCcEEEEEEecccc
Confidence 7666689999999966443
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=52.07 E-value=76 Score=35.39 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..+..+..++||+++|.++ .|..+.-||--. ...+.+. |. +...|++|.|+||+...+++ ..
T Consensus 145 gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~-------------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSS-RGNFYSSWDPGQ-------------TTWQPHN--RN-SSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp --EEEEEE-TTS-EEEEET-TSSEEEEE-TT--------------SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred ceeEeEEECCCCcEEEEEC-cccEEEEecCCC-------------ccceEEc--cC-ccceehhceecCCCCEEEEe-CC
Confidence 6788899999999888875 577666665321 1233332 33 34569999999998876655 66
Q ss_pred CcEEEEe
Q 003336 402 GTSHLFA 408 (828)
Q Consensus 402 GTVhIwd 408 (828)
|-++.=+
T Consensus 207 g~~~~s~ 213 (302)
T PF14870_consen 207 GQIQFSD 213 (302)
T ss_dssp TEEEEEE
T ss_pred cEEEEcc
Confidence 6665544
No 393
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=50.01 E-value=95 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
|+|+.|..+..+...|.++|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 688877777765556899998764
No 394
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=49.85 E-value=33 Score=41.13 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=38.8
Q ss_pred EEEEcCCCCEEEEEecCCCEEE---------EEeCCCCCCCC-CCccCCCCceeEEEEEecCCccccEEEEEEccCCCEE
Q 003336 326 ALCFDPSGILLVTASVQGHNIN---------IFKIIPGILGT-SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 395 (828)
Q Consensus 326 aLaFSPdG~lLATaS~DGt~I~---------IWdi~~~~~~~-~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 395 (828)
.|+|+|+|.|++.-...+...+ +|++... .|. -... ......+.+|-.+...+++..++|+||++.|
T Consensus 440 NL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~-~G~~~~~~--~~~~g~~~rf~~~P~gaE~tG~~fspDg~tl 516 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARN-DGNNVWAY--DPDTGELKRFLVGPNGAEITGPCFSPDGRTL 516 (524)
T ss_pred ceEECCCCCEEEEeCCCCCCcccccccccCceeeeeec-ccceeeec--cccccceeeeccCCCCcccccceECCCCCEE
Confidence 3899999998776544443222 1222100 000 0000 0011234455566667889999999999998
Q ss_pred EEE
Q 003336 396 MIS 398 (828)
Q Consensus 396 As~ 398 (828)
.+.
T Consensus 517 Fvn 519 (524)
T PF05787_consen 517 FVN 519 (524)
T ss_pred EEE
Confidence 763
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.81 E-value=5.3e+02 Score=30.95 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=39.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEE----------EEEEc-CCEEEEEeCCEEEEEECCCCceEEEEE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS--PIY----------SVRCS-SRVVAICQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s--~V~----------sV~~S-~riLAVs~~~~I~IwDl~t~~~l~tL~ 172 (828)
+.|.=.|++||+.+.+..... .+. .+.+. .++++...++.++++|+.|++.+....
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 457777999999998876532 121 12333 455555778999999999999887754
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=49.46 E-value=7.1e+02 Score=32.28 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=67.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
-.|+||++.+++.+..=..|..++.+|...-.|..+|.|+.-+. |.+-..... . -.++.+-|...+
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-e------------g~f~evArD~~p 913 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-E------------GNFEEVARDYNP 913 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-C------------CceEEeehhhCc
Confidence 37999999999888777788999999999999999999988765 666554432 0 124555566555
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
..+..+.+=.|..++ .+..+|.+.+-..+
T Consensus 914 ~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 914 NWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred cceeeEEEecCceEE-eecccccEEEEEec
Confidence 556666665555444 45566766666554
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=48.99 E-value=4e+02 Score=29.30 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=41.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEE-cCCEEEEE-eCCEEEEEECCCCceEEEEE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRC-SSRVVAIC-QAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~-S~riLAVs-~~~~I~IwDl~t~~~l~tL~ 172 (828)
..|+.+|+.||+......++...++ |.. +.++.... -++..++||..+++.+.++.
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 7899999999999999999887765 444 34555544 46789999999999887763
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=48.92 E-value=53 Score=40.19 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=39.1
Q ss_pred CEEEEEECCCCcEEEEEeC--CCCEEEEEEc-----CCEEEEEeCCEEEEEE
Q 003336 117 TVVHFYSLRSQSYVHMLKF--RSPIYSVRCS-----SRVVAICQAAQVHCFD 161 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S-----~riLAVs~~~~I~IwD 161 (828)
.++.|||.+.+....+-.| ...|.++.+. .-+|||+...+|.+|-
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 7899999999998888888 7799999994 4588999999999875
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.17 E-value=1.2e+02 Score=36.22 Aligned_cols=103 Identities=15% Similarity=0.265 Sum_probs=62.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC--EEEEE-----ecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTA-----SVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~--lLATa-----S~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
+.++.....+.-.|+..|+++...+-|.. |+-+.|.|+++ .|.+. =.+. +||.+.+...+..- -
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n---~vfriDpRv~~~~k-----l 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDN---SVFRIDPRVQGKNK-----L 419 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCC---ceEEecccccCcce-----e
Confidence 34555566788889999999999998876 88888888765 33321 1222 24444432111100 0
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
.+..-..+.++. ..+|++=.-+| +||+||.+|-|+|||-
T Consensus 420 ~~~q~kqy~~k~---nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 420 AVVQSKQYSTKN---NFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeecccccccc---ccceeeecCCc-eEEEeecCCcEEeehh
Confidence 011112232332 35666666665 8899999999999997
No 400
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.62 E-value=33 Score=36.26 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.1
Q ss_pred EEEeCCCCEEEEEEcCCE-EEEEeCCEEEEEECCCCceE
Q 003336 131 HMLKFRSPIYSVRCSSRV-VAICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 131 ~tL~f~s~V~sV~~S~ri-LAVs~~~~I~IwDl~t~~~l 168 (828)
-.|...++|.-+.+++.+ +|++..+.+++||+.+++.+
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 456678888889998655 45688999999999998753
No 401
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=46.45 E-value=33 Score=41.75 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..|.--||+-.+++|+.|+.-|- +.+|.-..+ ...+++. .| ....+..++.|++..++|+|+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~-------------~~~~~~~-~~-~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTG-------------EMRKLKN-EG-ATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred ceEEEEEeecCCceEEEecccce-EEEEecCch-------------hhhcccc-cC-ccceEEEEEecchhHhhhhhcCC
Confidence 45666688999999999999996 788876544 1223333 12 22336778899999999999999
Q ss_pred CcEEEEecCCC
Q 003336 402 GTSHLFAINPL 412 (828)
Q Consensus 402 GTVhIwdl~~~ 412 (828)
|.|-||.++..
T Consensus 98 g~V~v~ql~~~ 108 (726)
T KOG3621|consen 98 GRVSVFQLNKE 108 (726)
T ss_pred ceEEeehhhcc
Confidence 99999999883
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.36 E-value=1.1e+02 Score=32.42 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred EcCCCCEEEEEecCCCEEEEEeCCCCCC--CCCCccCCCCceeEEEEE----ecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 329 FDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 329 FSPdG~lLATaS~DGt~I~IWdi~~~~~--~~~~~~~~~~~~~~l~~L----~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+..++.+|+.-..+|. ++|||+..... ...+ ...+..- .+ .....|.++.++.+|.-|++-+ +|
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~S-------i~pll~~~~~~~~-~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVS-------IAPLLNSSPVSDK-SSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCcc-------HHHHhcccccccC-CCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 5567888888888998 89999987611 0000 0000000 00 1123488899999998877665 47
Q ss_pred cEEEEecCC
Q 003336 403 TSHLFAINP 411 (828)
Q Consensus 403 TVhIwdl~~ 411 (828)
....|+.+-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 788888754
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=44.69 E-value=1.3e+02 Score=33.00 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=44.4
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEE-eCCEEEEEECCCCceEEEEEc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs-~~~~I~IwDl~t~~~l~tL~t 173 (828)
..++..+||..+-+.+.++.++..=+.++..++.|.++ ...+|+++|..+++...++.-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 34889999999999999999999889999886666554 457999999999998877743
No 404
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=43.19 E-value=1e+02 Score=38.60 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=51.7
Q ss_pred CCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc---------cccEEEEEEccC
Q 003336 322 SPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT---------NAVIQDISFSDD 391 (828)
Q Consensus 322 ~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t---------~a~I~sIaFSpD 391 (828)
.+...++|+| +-+.||.-+..|+ ..|||+....... ...+.+.++.. ......|+|.++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~----------~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~ 214 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRK----------SSNLRLSRNISGSIIFDPEELSNWKRILWVSD 214 (765)
T ss_pred CccceEEeccCccceEEEEeccCc-EEEEEeccccccC----------CcceeeccCCCccccCCCcccCcceeeEecCC
Confidence 4788899999 6679999999998 7999993221100 00111111111 111347899999
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q 003336 392 SNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 392 g~~LAs~S~DGTVhIwdl~~~ 412 (828)
...|++++ +..+.++|+.+.
T Consensus 215 ~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 215 SNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred CCEEEEEc-CCceEEEECCCC
Confidence 88887765 557889999864
No 405
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=41.90 E-value=1.1e+02 Score=27.79 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=34.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
|.|..||-..-+.+ ..+ -..-+.|.+||++++|..++.-+..|+||...
T Consensus 36 ~~Vvyyd~~~~~~v--a~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVV--ASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEe--ecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 56778886543222 111 13346789999999999988887779998764
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=41.79 E-value=1e+02 Score=36.60 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=27.8
Q ss_pred EEEEEEcc----CCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 383 IQDISFSD----DSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 383 I~sIaFSp----Dg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
+.+++++. +..+|++.+.|+++|||++.+.....+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 56666666 8899999999999999999987664443
No 407
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.94 E-value=1.6e+02 Score=37.09 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=62.2
Q ss_pred CeEEEEECCCC------cEE---EEec----cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 301 GMVIVRDIVSK------NVI---AQFR----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 301 G~V~IwDl~s~------~~i---~~f~----aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
-.|+|||+... .++ ..+. -...|+++|+.+-|=+.+|.|=.+|.+ ..+.-... ... +.
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V-~~~~GDi~-RDr-------gs 162 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLV-ICYKGDIL-RDR-------GS 162 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEE-EEEcCcch-hcc-------cc
Confidence 37999998742 233 2221 235689999999999999999999984 34432211 000 01
Q ss_pred eeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+..|. ++|- ..|+.++|..|++-++-+..-..|++|.+.
T Consensus 163 -r~~~~-~~~~--~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 163 -RQDYS-HRGK--EPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred -ceeee-ccCC--CCceeeEEecCCceeEEEEecceeEEEEec
Confidence 22233 3443 349999999999984444445579999998
No 408
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.57 E-value=52 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=14.9
Q ss_pred EEc-CCEEEEEeCCEEEEEECCC
Q 003336 143 RCS-SRVVAICQAAQVHCFDAAT 164 (828)
Q Consensus 143 ~~S-~riLAVs~~~~I~IwDl~t 164 (828)
... +++++.+.+++++++|+.|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 444 5555667789999999875
No 409
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.27 E-value=12 Score=39.38 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=17.5
Q ss_pred ccEEEEccCccEEE--Eeeeecc
Q 003336 521 NHLLVFSPSGCMIQ--YALRIST 541 (828)
Q Consensus 521 ~~l~v~~p~g~~~q--y~l~~~~ 541 (828)
..|-||+|+|||+| |.++...
T Consensus 6 raltvFSPDGhL~QVEYAqEAvr 28 (249)
T KOG0183|consen 6 RALTVFSPDGHLFQVEYAQEAVR 28 (249)
T ss_pred cceEEECCCCCEEeeHhHHHHHh
Confidence 35889999999999 8887664
No 410
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=38.76 E-value=3.6e+02 Score=26.78 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=42.8
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc------CCEEEEEeCCEEEEEECCCCceEEEE
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS------SRVVAICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S------~riLAVs~~~~I~IwDl~t~~~l~tL 171 (828)
++.|..||...+.-+-.-.++..|.+|.+- ..++.|+..-.|.-||..--+..+++
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 378999999988877666778889998882 45666666668999998766666655
No 411
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=38.70 E-value=2.4e+02 Score=31.53 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=56.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~-~~l~~L~RG~t 379 (828)
+.|.-||..+++. ..|......-..+.++..|.++++ .+| +.+++..++ .. ..+.....+..
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~--~~g--~~~~~~~~~------------~~~t~~~~~~~~~~ 109 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIAC--EHG--VRLLDPDTG------------GKITLLAEPEDGLP 109 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEE--ccc--cEEEeccCC------------ceeEEeccccCCCC
Confidence 5677777765533 333333333344556666655444 333 467777554 12 34444444554
Q ss_pred cccEEEEEEccCCCEEEEEeC---------CCcEEEEecCCCCCce
Q 003336 380 NAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGGSV 416 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~---------DGTVhIwdl~~~gg~~ 416 (828)
....+++...|||.+.+.... ..+-.||.+.+.+...
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 455789999999998876555 2233567776544433
No 412
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=37.94 E-value=4.7e+02 Score=28.35 Aligned_cols=108 Identities=13% Similarity=0.287 Sum_probs=64.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH-~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
++..+.++.|..+|. +++.+..+.-. .+-.-.|++--+|+++++.-.+++ +.++++..... . . ......
T Consensus 37 faV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~-L~~~~~~~~~~-~-~------~~~~~~ 106 (248)
T PF06977_consen 37 FAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR-LYIFTIDDDTT-S-L------DRADVQ 106 (248)
T ss_dssp EEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE-EEEEEE----T-T---------EEEEE
T ss_pred EEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc-EEEEEEecccc-c-c------chhhce
Confidence 344567788988997 47888887643 256788899888877776545665 78888854200 0 0 011122
Q ss_pred EEecCCc---cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 373 RLQRGLT---NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 373 ~L~RG~t---~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
++.-+.. +..+-.|||.|.++.|.++-.+....||.+..
T Consensus 107 ~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 107 KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 2222222 23389999999988888888888888888865
No 413
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=37.15 E-value=3.3e+02 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=29.8
Q ss_pred cEEEEEccCCeEEEEecCC-CceeEeeeeecCCEEEEEEec
Q 003336 19 RVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLP 58 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~-~~~~ellS~hdG~V~~v~~lP 58 (828)
+.|++|++.|+-+.|+... +....++++ .+|..+.+++
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~--~~v~q~~v~~ 52 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGR--RSVTQIWVLE 52 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCc--CceEEEEEEh
Confidence 5799999999999998753 456666664 4899999886
No 414
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=36.77 E-value=1.5e+02 Score=27.06 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=12.5
Q ss_pred EEEEEEccCCCEEEEE
Q 003336 383 IQDISFSDDSNWIMIS 398 (828)
Q Consensus 383 I~sIaFSpDg~~LAs~ 398 (828)
-+.|++|+|+++|+.+
T Consensus 59 pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 59 PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEE-TTSSEEEEE
T ss_pred cCeEEEcCCCCEEEEE
Confidence 5789999999987765
No 415
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=36.37 E-value=66 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=22.6
Q ss_pred EEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 148 VVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 148 iLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
+++...++.|+.+|+.|++.+......+
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 4455678899999999999999887643
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=36.03 E-value=1.9e+02 Score=31.05 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 323 PISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS--~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
.+.+.+.|+||+.+|... .++..+.++..... ...+. .|. .+..-+|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------------~~~~~---~g~---~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------------VRPVL---TGG---SLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------------ceeec---cCC---ccccccccCCCCEEEEEcC
Confidence 688899999999988877 67765666554322 12211 222 3677899999877777676
Q ss_pred CCcEEEEe
Q 003336 401 RGTSHLFA 408 (828)
Q Consensus 401 DGTVhIwd 408 (828)
+...+++.
T Consensus 86 ~~~~~~~~ 93 (253)
T PF10647_consen 86 SGGVRVVR 93 (253)
T ss_pred CCceEEEE
Confidence 77777765
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=35.93 E-value=2.4e+02 Score=31.53 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCeE-EEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 299 NVGMV-IVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 299 ~dG~V-~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..|.+ .-||-....=..+-+.-...|.+|.|+||+.+.+.+ ..|. |+.=+.... ............
T Consensus 163 ~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~-----------~~~w~~~~~~~~ 229 (302)
T PF14870_consen 163 SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDD-----------GETWSEPIIPIK 229 (302)
T ss_dssp TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTE-----------EEEE---B-TTS
T ss_pred CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCC-----------ccccccccCCcc
Confidence 33433 346543222222333445789999999999987766 5554 544331110 000000001011
Q ss_pred CccccEEEEEEccCCCEEEEEeCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
.....|.+++|.++....|++...
T Consensus 230 ~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 230 TNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp S--S-EEEEEESSSS-EEEEESTT
T ss_pred cCceeeEEEEecCCCCEEEEeCCc
Confidence 112238999999998888866543
No 418
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=35.70 E-value=84 Score=37.86 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=37.7
Q ss_pred EEEEEcCCCCEEEEEecCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 325 SALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DG-----t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
--|+|+|.|+|.+.-...+ +..-+|.+.+. ....-.+..|.++-..+++..+|||||++.|.++
T Consensus 503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~----------~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP----------DPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CceEECCCCCEEEEecCCCCccCcccccccccccC----------CCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 4589999999876532211 12223322221 1122344455556555779999999999887664
No 419
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=33.13 E-value=1.5e+02 Score=34.98 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCEEEEEecCC
Q 003336 324 ISALCFDPSGILLVTASVQG 343 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DG 343 (828)
-..|+|.|||+|+++.++.|
T Consensus 148 GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CceEEECCCCcEEEEECCCC
Confidence 35688999999888766654
No 420
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=32.66 E-value=2.6e+02 Score=32.32 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
..|.++.|+.+.+ |++-..||++++|++.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 4599999999755 4466799999999984
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=32.40 E-value=15 Score=45.69 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=36.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEE-----------EEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISAL-----------CFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL-----------aFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
..+|.|++..+..... ..|+.|...+..+ ..||||+.||+++.||. ++.|.+.
T Consensus 202 ~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 4567777755543222 4566676555443 37999999999999997 7888765
No 422
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=32.18 E-value=1.1e+02 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=20.1
Q ss_pred CCEEEEEeCCEEEEEECCCCceEEEE
Q 003336 146 SRVVAICQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 146 ~riLAVs~~~~I~IwDl~t~~~l~tL 171 (828)
+.+++...++.++.+|+.+++.+.+.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 34556677899999999999877653
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=31.85 E-value=2.1e+02 Score=32.35 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEE----------------EEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEE
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNI----------------NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I----------------~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~ 384 (828)
......|+|.|||++.++-+..+... .||.+.+. +.. +-.+..|+. ..+
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd-----------g~~--~e~~a~G~r--np~ 187 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD-----------GGK--LRVVAHGFQ--NPY 187 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC-----------CCe--EEEEecCcC--CCc
Confidence 34578899999999888755321100 13333321 011 112223432 267
Q ss_pred EEEEccCCCEEEEEeCC
Q 003336 385 DISFSDDSNWIMISSSR 401 (828)
Q Consensus 385 sIaFSpDg~~LAs~S~D 401 (828)
.++|+|+|+++++-..+
T Consensus 188 Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 188 GHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cceECCCCCEEEEccCC
Confidence 89999999998765533
No 424
>PRK10115 protease 2; Provisional
Probab=31.37 E-value=1.7e+02 Score=36.26 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCEEEEEecC-CC---EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEE
Q 003336 322 SPISALCFDPSGILLVTASVQ-GH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~D-Gt---~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 397 (828)
..+..+.+||||++||-+.+. |. .|+|-|+.++ ..+-. ...... ..++|++|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------------~~l~~---~i~~~~-~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------------NWYPE---LLDNVE-PSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------------CCCCc---cccCcc-eEEEEeeCCCEEEE
Confidence 357788999999998876443 32 3667777654 10101 111112 45999999998887
Q ss_pred EeCC
Q 003336 398 SSSR 401 (828)
Q Consensus 398 ~S~D 401 (828)
+..+
T Consensus 189 ~~~~ 192 (686)
T PRK10115 189 VRKH 192 (686)
T ss_pred EEec
Confidence 7654
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=31.32 E-value=1.5e+02 Score=31.48 Aligned_cols=58 Identities=12% Similarity=0.373 Sum_probs=37.7
Q ss_pred EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 327 LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
++-++.+.+|++ ..|..|.+|++... ....+.+|. |-..|..+.++.-|.||++-=.+
T Consensus 23 ~c~~g~d~Lfva--~~g~~Vev~~l~~~------------~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVA--ASGCKVEVYDLEQE------------ECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEE--cCCCEEEEEEcccC------------CCceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 333343344443 23556999999843 235666773 33569999999999999986443
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.93 E-value=96 Score=36.45 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=53.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
..++|.+++||+|.+.||.--.+.+ |..+...+... ...+.......+..|...+|+.. .-+|..+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~------------~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNS------------QLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCce-EEEEecCCCch------------hhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 3468999999999999999888876 78888754300 11111111112345999999876 6677776
Q ss_pred CCCcEEEEecCCCCC
Q 003336 400 SRGTSHLFAINPLGG 414 (828)
Q Consensus 400 ~DGTVhIwdl~~~gg 414 (828)
..| +-+|.+.+...
T Consensus 131 ~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKR 144 (657)
T ss_pred cCC-eEEEEEchhhh
Confidence 665 67787766544
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=30.78 E-value=6.5e+02 Score=28.51 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=38.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCe---EEEEE------cCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPI---SALCF------DPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pI---saLaF------SPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
..-|.|-++|+. ++.++.|. +..+. ..|+. ..+|.+|+-==-||+ |++||..++
T Consensus 219 ~G~G~VdvFd~~-G~l~~r~a-s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~-InaFD~~sG 281 (336)
T TIGR03118 219 AGLGYVNVFTLN-GQLLRRVA-SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT-INAYDPQSG 281 (336)
T ss_pred CCcceEEEEcCC-CcEEEEec-cCCcccCCceeeeChhhhCCCCCCeEEeecCCce-eEEecCCCC
Confidence 456899999975 66777663 33322 33444 347889998777998 999998776
No 428
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=30.05 E-value=2.8e+02 Score=35.24 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=24.6
Q ss_pred EEEcCCEEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 142 VRCSSRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 142 V~~S~riLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.+++-.++..-...-|.|++++|+++++++.++.
T Consensus 1104 FalsypYIlaf~~~fIeIr~ieTgeLI~~ilg~~ 1137 (1175)
T COG5422 1104 FALSYPYILAFEPNFIEIRHIETGELIRCILGHN 1137 (1175)
T ss_pred eeeecceEEEecCceEEEEecccceeeeeeccCc
Confidence 4445444444445679999999999999998763
No 429
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.20 E-value=7.3e+02 Score=31.25 Aligned_cols=47 Identities=9% Similarity=0.294 Sum_probs=38.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEEEeCCEEEEEECCC
Q 003336 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAAT 164 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAVs~~~~I~IwDl~t 164 (828)
-.|+||++ +|+.+..+.. +..+..+.|+ ..+|+|.-++++++|++.-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecch
Confidence 46999998 6888877765 4588889997 5788889999999999874
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=26.87 E-value=5.4e+02 Score=29.04 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCEEEEEe-----------cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC
Q 003336 323 PISALCFDPSGILLVTAS-----------VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS-----------~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 391 (828)
...+|+|+++|+++++-. ..|..|.+++-..+ .| .......+-.+.. ....|+|.++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-dG---------~~d~~~vfa~~l~--~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG-DG---------KYDKSNVFAEELS--MVTGLAVAVG 82 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-CC---------CcceeEEeecCCC--CccceeEecC
Confidence 446799999999888753 22323566654332 11 1122223333332 2578999999
Q ss_pred CCEEE
Q 003336 392 SNWIM 396 (828)
Q Consensus 392 g~~LA 396 (828)
| .++
T Consensus 83 G-lyV 86 (367)
T TIGR02604 83 G-VYV 86 (367)
T ss_pred C-EEE
Confidence 9 444
No 431
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=26.79 E-value=1.4e+03 Score=28.87 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=45.2
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC--CCEEEEEeC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD--SNWIMISSS 400 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD--g~~LAs~S~ 400 (828)
....|.|.++-..|+.++.. + +.++|+.+.. ...+ +-...+...|.++.=+|+ +..++..+
T Consensus 205 ~w~rI~W~~~~~~lLv~~r~-~-l~~~d~~~~~------------~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLTs- 267 (765)
T PF10214_consen 205 NWKRILWVSDSNRLLVCNRS-K-LMLIDFESNW------------QTEY--LVTAKTWSWILDVKRSPDNPSHVFILTS- 267 (765)
T ss_pred cceeeEecCCCCEEEEEcCC-c-eEEEECCCCC------------ccch--hccCCChhheeeEEecCCccceEEEEec-
Confidence 34578999988878877765 3 7899998751 1111 222223345999999887 44443332
Q ss_pred CCcEEEEecCCC
Q 003336 401 RGTSHLFAINPL 412 (828)
Q Consensus 401 DGTVhIwdl~~~ 412 (828)
..|-.+++.+.
T Consensus 268 -~eiiw~~~~~~ 278 (765)
T PF10214_consen 268 -KEIIWLDVKSS 278 (765)
T ss_pred -CeEEEEEccCC
Confidence 56777777664
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=26.39 E-value=2.8e+02 Score=31.01 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEe
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFK 350 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWd 350 (828)
-.+|+|.|||++|++ ...|+ |++++
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~-i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGR-IWVVD 28 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTE-EEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCce-EEEEe
Confidence 467999999999886 44787 78887
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=26.06 E-value=1.2e+02 Score=35.62 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCEEEEEECCCCcEEEEEeCCC---CEEEEEEc------CCEEEEEeCCEEEEEEC
Q 003336 115 VPTVVHFYSLRSQSYVHMLKFRS---PIYSVRCS------SRVVAICQAAQVHCFDA 162 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f~s---~V~sV~~S------~riLAVs~~~~I~IwDl 162 (828)
.-+++.|||+++++.+++|.+.. -+..|+|- --++.+++..+|+.|--
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 34799999999999999999963 56789993 13566678888887754
No 434
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.82 E-value=7.1e+02 Score=27.54 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-----cCCCEEEEEeCCCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-----VQGHNINIFKIIPG 354 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-----~DGt~I~IWdi~~~ 354 (828)
.--|.+||..+.+=..--..-.+.|++|.|..+.++|+.|. .....+..||+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 45689999887654333334457899999998888888876 23345788888764
No 435
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=35 Score=39.73 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=47.8
Q ss_pred cccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCC
Q 003336 295 PDADNVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPG 354 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s---~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~ 354 (828)
+++.-||.++.|--.. -+.+..|++|...|..|+.+-||.++.|.+. |. .+++||+...
T Consensus 24 iqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh-s~KvfDvEn~ 86 (558)
T KOG0882|consen 24 IQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH-SVKVFDVENF 86 (558)
T ss_pred EeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCccc-ceeEEEeecc
Confidence 3566788899996432 2467889999999999999999999999877 75 4899998764
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=25.17 E-value=9.7e+02 Score=26.59 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCCCEEEEEecC-----C--------CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC---ccccEE
Q 003336 321 KSPISALCFDPSGILLVTASVQ-----G--------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL---TNAVIQ 384 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~D-----G--------t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~---t~a~I~ 384 (828)
....-+|+++|||+.|.++... | ..++|+.......+. ......|.+..-. ....|.
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~-------~~~~~~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGE-------PVAEYAYPLDPPPTAPGDNGIS 218 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCc-------cceEEEEeCCccccccCCCCce
Confidence 3568899999999976665442 2 125666555431010 0224456664200 123599
Q ss_pred EEEEccCCCEEEEEe-----CCCcEEEEecCCC
Q 003336 385 DISFSDDSNWIMISS-----SRGTSHLFAINPL 412 (828)
Q Consensus 385 sIaFSpDg~~LAs~S-----~DGTVhIwdl~~~ 412 (828)
++++-+|+++|+.== ...+++||.+...
T Consensus 219 d~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 999999999877532 2456777777643
No 437
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=25.05 E-value=1.1e+02 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=23.9
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003336 383 IQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (828)
Q Consensus 383 I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~ 411 (828)
-..|.++||+++|.+++ .+++||+|..+.
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 36899999999988766 568999998764
No 438
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=24.74 E-value=3.9e+02 Score=29.82 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred cEEEEeccCCCCeEEEEEcCC-------CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEE
Q 003336 312 NVIAQFRAHKSPISALCFDPS-------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPd-------G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~ 384 (828)
.++..+.+|. .+..+.|-.. |.+|++. ..+..|...++... +.......+- +.....+.
T Consensus 244 ~P~~~~~~~~-ap~G~~~y~g~~fp~~~g~~~~~~-~~~~~i~~~~~~~~-----------~~~~~~~~~~-~~~~~r~~ 309 (331)
T PF07995_consen 244 PPVFAYPPHS-APTGIIFYRGSAFPEYRGDLFVAD-YGGGRIWRLDLDED-----------GSVTEEEEFL-GGFGGRPR 309 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEE-TTTTEEEEEEEETT-----------EEEEEEEEEC-TTSSS-EE
T ss_pred ccceeecCcc-ccCceEEECCccCccccCcEEEec-CCCCEEEEEeeecC-----------CCccceEEcc-ccCCCCce
Confidence 4667787774 4556777644 4455554 44443444444332 1122233333 22233599
Q ss_pred EEEEccCCCEEEEEeCCCcE
Q 003336 385 DISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 385 sIaFSpDg~~LAs~S~DGTV 404 (828)
+|++.|||.+.++...+|+|
T Consensus 310 ~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 310 DVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp EEEEETTSEEEEEE-TTTTE
T ss_pred EEEEcCCCeEEEEECCCCeE
Confidence 99999999999988888876
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=24.22 E-value=39 Score=42.43 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=55.9
Q ss_pred CCCeEEEEECC--CCcEEEEec-----cCCCCeEEEEE---cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 299 NVGMVIVRDIV--SKNVIAQFR-----AHKSPISALCF---DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 299 ~dG~V~IwDl~--s~~~i~~f~-----aH~~pIsaLaF---SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
..|...|||++ .|+....+. .-..++.-|.| -++.-++..+-.+|+ |++..+... .
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra-------------~ 216 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRA-------------L 216 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechH-------------H
Confidence 45788899876 454433333 22334333443 445556666666666 777766543 0
Q ss_pred eEEEEEecCCccccEEEE-----------EEccCCCEEEEEeCCCcEEEEecCC
Q 003336 369 VHLYRLQRGLTNAVIQDI-----------SFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sI-----------aFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+ .+-|+|... +.++ ..||||+-||.++.||.++.|.+--
T Consensus 217 ~---~l~rsHs~~-~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 217 R---SLFRSHSQR-VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred H---HHHHhcCCC-cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 1 222343221 2222 3799999999999999998888743
No 440
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.00 E-value=1.8e+02 Score=26.67 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=32.9
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CCEEEEE
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIF 349 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt~I~IW 349 (828)
.+...|.+.-||..+++.-..+.+- .--+.|++++|+..|+.+-.- .++.|.|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 4567799999999998764444432 245789999999976665443 3334444
No 441
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=23.90 E-value=1.4e+02 Score=21.43 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=20.1
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 383 IQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 383 I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|.+|+-++ +|+|++++.+-++||.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 67777776 5999999999999983
No 442
>PRK10115 protease 2; Provisional
Probab=23.86 E-value=6.5e+02 Score=31.30 Aligned_cols=98 Identities=6% Similarity=0.055 Sum_probs=55.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-C----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G----HNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-G----t~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+..-.|+|.|+.++..+...-.... ..++|++||+.|+-...+ + ..|..+++.++. .....++
T Consensus 150 ~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~----------~~d~lv~ 217 (686)
T PRK10115 150 RRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA----------SQDELVY 217 (686)
T ss_pred cEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh----------hHCeEEE
Confidence 3445799999998864322212221 459999999876655443 2 235555555431 1124455
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCCC---cEEEEecC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRG---TSHLFAIN 410 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG---TVhIwdl~ 410 (828)
+-. .......+..+.|++++.+.+..+ .+.+|+..
T Consensus 218 ~e~---~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 218 EEK---DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred eeC---CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 421 111122445566999887766554 57888854
No 443
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.70 E-value=3.6e+02 Score=30.20 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=44.0
Q ss_pred EEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC---
Q 003336 326 ALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR--- 401 (828)
Q Consensus 326 aLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D--- 401 (828)
.|+|+|. ..-+|-|-.-|+...|||......-.... ..+.+|.| | .=+|||||.||-..-.|
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~---s~~~RHfy----G-------HGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV---SQEGRHFY----G-------HGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe---cccCceee----c-------ccccCCCCcEEEeecCCCCC
Confidence 3789995 55788888889988999987641100000 00112211 2 24699999999776443
Q ss_pred --CcEEEEecC
Q 003336 402 --GTSHLFAIN 410 (828)
Q Consensus 402 --GTVhIwdl~ 410 (828)
|.|=|||..
T Consensus 138 ~rGViGvYd~r 148 (366)
T COG3490 138 NRGVIGVYDAR 148 (366)
T ss_pred CCceEEEEecc
Confidence 677777765
No 444
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=23.11 E-value=6.2e+02 Score=29.34 Aligned_cols=91 Identities=15% Similarity=0.282 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCC-C---Cc-----------------------cCCC-C-ceeEEEE
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGT-S---SA-----------------------CDAG-T-SYVHLYR 373 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~-~---~~-----------------------~~~~-~-~~~~l~~ 373 (828)
.|+++.|+++..-||.+-..|. +-||......... . .. .+.. . ....++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999888999999998 5688765431110 0 00 0000 0 0111111
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
++- ....|..++.| |=-|+|+|..+|++-|.|+. |..+.++
T Consensus 82 ~~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~R--GPavI~~ 122 (395)
T PF08596_consen 82 LDA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLR--GPAVIYN 122 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT--TTEEEEE
T ss_pred eec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECC--CCeEEee
Confidence 211 12458999998 66699999999999999993 3444444
No 445
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=23.02 E-value=1.8e+02 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=24.6
Q ss_pred EEEEEEccCCCEEEEEeC-----CCcEEEEecCCCCC
Q 003336 383 IQDISFSDDSNWIMISSS-----RGTSHLFAINPLGG 414 (828)
Q Consensus 383 I~sIaFSpDg~~LAs~S~-----DGTVhIwdl~~~gg 414 (828)
+++++.-|||++|++++. +....|+++++.|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 578899999999999964 34567788877544
No 446
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=22.38 E-value=2.8e+02 Score=30.81 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc----EEEEEEccCCCEEEEEe
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV----IQDISFSDDSNWIMISS 399 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~----I~sIaFSpDg~~LAs~S 399 (828)
|++|...++|.+|+++-.-.+ |.+.|-.++ ..+++| .|..... -...+|-+|-+++-.+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG--------------~I~W~l-gG~~~~df~~~~~~f~~QHdar~~~~~~ 209 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTST-IYKIDPSTG--------------KIIWRL-GGKRNSDFTLPATNFSWQHDARFLNESN 209 (299)
T ss_pred eeeeeecCCccEEEEecccCE-EEEEECCCC--------------cEEEEe-CCCCCCcccccCCcEeeccCCEEeccCC
Confidence 566678889999888765533 555554443 345565 2321111 12356677888888888
Q ss_pred CCCcEEEEecC
Q 003336 400 SRGTSHLFAIN 410 (828)
Q Consensus 400 ~DGTVhIwdl~ 410 (828)
.+++|.|||=.
T Consensus 210 ~~~~IslFDN~ 220 (299)
T PF14269_consen 210 DDGTISLFDNA 220 (299)
T ss_pred CCCEEEEEcCC
Confidence 99999999974
No 447
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.05 E-value=5e+02 Score=30.14 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=44.3
Q ss_pred EECCCCcEEEEeccCCC-----CeEEEEEcCCCCEEE-EEecCCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 306 RDIVSKNVIAQFRAHKS-----PISALCFDPSGILLV-TASVQGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 306 wDl~s~~~i~~f~aH~~-----pIsaLaFSPdG~lLA-TaS~DGt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
-|-.||..|..+..+.. .-+.=+|.+||+.|+ .+..+|. .+.+-|+.++ .+.+|.-|.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~---------------~i~QLTdg~ 79 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG---------------EITQLTDGP 79 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT----------------EEEE---SS
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC---------------EEEECccCC
Confidence 35566766666653322 112237899997555 4555665 2334466554 333443332
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
. ......+.||+++.|.-.....++.-.||.+....
T Consensus 80 g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 80 G-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp --B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred C-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 1 12345778899999887777778888888876443
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=21.92 E-value=8e+02 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
.-..|+|.|||++|+|--..|+ |++++-.
T Consensus 31 ~Pw~maflPDG~llVtER~~G~-I~~v~~~ 59 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGK-ILRVNPE 59 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCE-EEEEeCC
Confidence 4567999999999988665687 6777643
No 449
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.83 E-value=4e+02 Score=29.93 Aligned_cols=84 Identities=13% Similarity=0.275 Sum_probs=57.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 319 aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
+-+..|++|+|+|+.+.|.+-..+...| ||=...| .+.....| .|. +.-..|.+.-+++++++-
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~i-VElt~~G------------dlirtiPL-~g~--~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEG------------DLIRTIPL-TGF--SDPETIEYIGGNQFVIVD 146 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceE-EEEecCC------------ceEEEecc-ccc--CChhHeEEecCCEEEEEe
Confidence 3345599999999988888777776643 4433333 22232333 232 235678899999999999
Q ss_pred eCCCcEEEEecCCCCCceee
Q 003336 399 SSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 399 S~DGTVhIwdl~~~gg~~~~ 418 (828)
=.++++.++.+.+.+....+
T Consensus 147 ER~~~l~~~~vd~~t~~~~~ 166 (316)
T COG3204 147 ERDRALYLFTVDADTTVISA 166 (316)
T ss_pred hhcceEEEEEEcCCccEEec
Confidence 89999999999887654433
No 450
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=21.38 E-value=2.9e+02 Score=32.13 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.1
Q ss_pred CeEEEEEcCCCCEEEEEecC
Q 003336 323 PISALCFDPSGILLVTASVQ 342 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~D 342 (828)
.=..|.|+|||+|++|.+..
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred CcccEEECCCCcEEEEeCCC
Confidence 44679999999999986655
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=21.16 E-value=1.6e+02 Score=34.95 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CeEEEEEcC----CCCEEEEEecCCCEEEEEeCCCC
Q 003336 323 PISALCFDP----SGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 323 pIsaLaFSP----dG~lLATaS~DGt~I~IWdi~~~ 354 (828)
.+.++++++ +-++|+|-+.|++ +||||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCC
Confidence 445566666 6789999999987 899999987
No 452
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.12 E-value=1e+02 Score=33.11 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=43.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEE--ecCCCEEEEEeCCC
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTA--SVQGHNINIFKIIP 353 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~-~pIsaLaFSPdG~lLATa--S~DGt~I~IWdi~~ 353 (828)
+..+|.|+.|.+.-.+.+...-.|+ .++..+..+..++.|+.+ |.|-. ++.|++..
T Consensus 120 ~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~ 178 (238)
T KOG2444|consen 120 GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEK 178 (238)
T ss_pred eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhh
Confidence 4578999999999888888777887 677777777777777777 66644 77787765
No 453
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.53 E-value=1.7e+02 Score=20.51 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 383 IQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 383 I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
-.+|+++++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678999999999888888888776
No 454
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=20.34 E-value=4.1e+02 Score=30.11 Aligned_cols=59 Identities=5% Similarity=-0.021 Sum_probs=42.2
Q ss_pred cCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCC---------------------EEEEEECCCCceEEEEE
Q 003336 114 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAA---------------------QVHCFDAATLEIEYAIL 172 (828)
Q Consensus 114 ~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~---------------------~I~IwDl~t~~~l~tL~ 172 (828)
+..+.|.-+|+.+|+......++.-...+.|.+++++|+..+ .|.|.|+.|+..+..|.
T Consensus 220 sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~ 299 (335)
T TIGR03032 220 SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR 299 (335)
T ss_pred CCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE
Confidence 345778888888887777777888888888888888876431 35666777776665554
Done!