Query 003336
Match_columns 828
No_of_seqs 373 out of 2352
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-26 9.9E-31 249.0 32.3 227 16-412 29-272 (355)
2 4gqb_B Methylosome protein 50; 99.9 6.3E-25 2.1E-29 239.2 31.9 228 18-411 94-331 (344)
3 3ow8_A WD repeat-containing pr 99.9 1.6E-24 5.4E-29 232.5 32.8 238 19-424 50-292 (321)
4 1got_B GT-beta; complex (GTP-b 99.9 2.4E-23 8.3E-28 223.7 36.6 241 18-425 68-315 (340)
5 1vyh_C Platelet-activating fac 99.9 1.3E-23 4.6E-28 232.4 33.7 237 19-424 122-382 (410)
6 3ow8_A WD repeat-containing pr 99.9 3.9E-23 1.3E-27 221.6 33.9 223 18-409 93-319 (321)
7 4h5i_A Guanine nucleotide-exch 99.9 2.5E-23 8.6E-28 227.3 32.2 227 26-411 103-343 (365)
8 2ynn_A Coatomer subunit beta'; 99.9 6.9E-23 2.4E-27 216.8 33.6 237 18-422 26-270 (304)
9 4g56_B MGC81050 protein; prote 99.9 1.1E-23 3.7E-28 229.2 27.2 234 17-416 105-348 (357)
10 1vyh_C Platelet-activating fac 99.9 5.6E-23 1.9E-27 227.5 29.9 243 18-409 163-409 (410)
11 4gqb_B Methylosome protein 50; 99.9 7.9E-23 2.7E-27 222.6 28.9 241 16-425 40-302 (344)
12 3frx_A Guanine nucleotide-bind 99.9 3.7E-22 1.3E-26 212.9 33.4 247 18-411 31-317 (319)
13 2pbi_B Guanine nucleotide-bind 99.9 7.4E-22 2.5E-26 214.2 36.1 243 18-425 77-329 (354)
14 1got_B GT-beta; complex (GTP-b 99.9 4.7E-22 1.6E-26 213.7 32.8 222 18-408 110-340 (340)
15 2ynn_A Coatomer subunit beta'; 99.9 3.1E-22 1.1E-26 211.8 30.9 219 40-425 5-231 (304)
16 1erj_A Transcriptional repress 99.9 6.1E-22 2.1E-26 217.4 34.2 252 16-424 74-354 (393)
17 4gga_A P55CDC, cell division c 99.9 1.6E-21 5.6E-26 215.2 35.7 273 18-415 116-399 (420)
18 1nr0_A Actin interacting prote 99.9 5.9E-22 2E-26 230.7 33.2 113 293-421 462-579 (611)
19 2pm7_B Protein transport prote 99.9 1.4E-21 4.6E-26 206.2 30.1 246 18-412 22-286 (297)
20 3iz6_a 40S ribosomal protein R 99.9 1.7E-21 5.8E-26 212.8 31.8 260 18-412 79-376 (380)
21 1nr0_A Actin interacting prote 99.9 1.2E-21 3.9E-26 228.2 31.7 236 16-420 28-279 (611)
22 1erj_A Transcriptional repress 99.9 2.6E-21 9E-26 212.3 32.3 232 19-412 137-390 (393)
23 3k26_A Polycomb protein EED; W 99.9 2.3E-21 8E-26 204.6 30.4 294 18-410 35-365 (366)
24 4ery_A WD repeat-containing pr 99.9 8.6E-21 2.9E-25 199.4 34.1 239 18-424 36-281 (312)
25 2pbi_B Guanine nucleotide-bind 99.9 5.8E-21 2E-25 207.2 33.0 223 18-408 119-354 (354)
26 4ggc_A P55CDC, cell division c 99.9 3E-20 1E-24 193.1 36.4 270 18-412 36-316 (318)
27 2xzm_R RACK1; ribosome, transl 99.9 2.3E-20 7.9E-25 200.5 35.2 239 18-414 40-288 (343)
28 3iz6_a 40S ribosomal protein R 99.9 1.5E-21 5.1E-26 213.3 25.9 266 30-418 49-336 (380)
29 2ymu_A WD-40 repeat protein; u 99.9 8.9E-21 3.1E-25 215.2 33.1 218 17-408 355-577 (577)
30 4ery_A WD repeat-containing pr 99.9 2.3E-20 8E-25 196.1 33.5 217 40-423 15-235 (312)
31 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.7E-20 5.7E-25 202.3 32.9 243 18-413 29-285 (345)
32 2ymu_A WD-40 repeat protein; u 99.9 3.7E-20 1.3E-24 210.1 36.5 270 19-426 276-553 (577)
33 3zwl_B Eukaryotic translation 99.9 7.3E-20 2.5E-24 193.0 35.8 250 18-424 44-317 (369)
34 3mmy_A MRNA export factor; mRN 99.9 1.3E-20 4.3E-25 198.7 29.0 271 19-412 55-347 (368)
35 1r5m_A SIR4-interacting protei 99.9 1E-20 3.5E-25 203.4 28.1 276 18-410 120-424 (425)
36 3vl1_A 26S proteasome regulato 99.9 7.6E-21 2.6E-25 206.7 26.6 187 117-423 119-335 (420)
37 2hes_X YDR267CP; beta-propelle 99.9 4.6E-20 1.6E-24 197.6 32.3 270 19-411 26-328 (330)
38 1gxr_A ESG1, transducin-like e 99.9 1.6E-19 5.6E-24 188.3 35.0 262 17-409 62-335 (337)
39 3vl1_A 26S proteasome regulato 99.9 2.5E-20 8.7E-25 202.5 29.9 250 19-412 111-366 (420)
40 3jrp_A Fusion protein of prote 99.9 2.6E-20 9E-25 197.5 29.2 248 18-413 23-289 (379)
41 4aez_A CDC20, WD repeat-contai 99.9 1.3E-19 4.5E-24 198.4 35.2 269 18-415 104-384 (401)
42 3f3f_A Nucleoporin SEH1; struc 99.9 3.5E-20 1.2E-24 192.1 28.8 266 18-419 23-345 (351)
43 4aow_A Guanine nucleotide-bind 99.9 2.2E-19 7.5E-24 188.4 34.6 243 19-412 53-338 (340)
44 1sq9_A Antiviral protein SKI8; 99.9 2.9E-20 1E-24 200.1 27.3 108 295-419 201-330 (397)
45 3bg1_A Protein SEC13 homolog; 99.9 1.6E-20 5.6E-25 200.0 25.0 251 18-413 26-295 (316)
46 4a11_B DNA excision repair pro 99.9 1.1E-19 3.8E-24 194.7 31.4 247 18-416 56-370 (408)
47 3v7d_B Cell division control p 99.9 1.4E-19 4.8E-24 200.4 32.9 245 18-413 133-383 (464)
48 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.8E-19 6.3E-24 199.4 32.1 302 18-412 130-443 (445)
49 1sq9_A Antiviral protein SKI8; 99.9 4.9E-20 1.7E-24 198.3 26.3 230 19-412 83-396 (397)
50 3odt_A Protein DOA1; ubiquitin 99.9 6.8E-19 2.3E-23 182.0 33.7 258 19-412 31-297 (313)
51 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6.5E-19 2.2E-23 195.0 35.4 217 116-418 178-398 (445)
52 3ei3_B DNA damage-binding prot 99.9 6.9E-19 2.4E-23 189.9 34.3 222 39-423 64-294 (383)
53 3fm0_A Protein CIAO1; WDR39,SG 99.9 3E-19 1E-23 192.5 31.0 236 18-412 74-336 (345)
54 1p22_A F-BOX/WD-repeat protein 99.9 2.3E-19 7.7E-24 198.7 30.5 219 18-413 144-367 (435)
55 3frx_A Guanine nucleotide-bind 99.9 4.5E-19 1.6E-23 189.0 31.4 211 42-420 11-236 (319)
56 1r5m_A SIR4-interacting protei 99.9 4.3E-19 1.5E-23 190.8 31.2 274 20-413 60-363 (425)
57 2xzm_R RACK1; ribosome, transl 99.9 2.5E-19 8.7E-24 192.3 29.3 223 19-411 90-340 (343)
58 2hes_X YDR267CP; beta-propelle 99.8 3.5E-19 1.2E-23 190.8 30.0 102 295-411 123-230 (330)
59 3dm0_A Maltose-binding peripla 99.8 4.6E-19 1.6E-23 208.7 33.5 237 19-420 397-641 (694)
60 3gre_A Serine/threonine-protei 99.8 4.7E-20 1.6E-24 202.7 22.9 241 18-423 76-371 (437)
61 3ei3_B DNA damage-binding prot 99.8 4.3E-19 1.5E-23 191.5 30.1 266 19-411 88-382 (383)
62 1k8k_C P40, ARP2/3 complex 41 99.8 4.1E-19 1.4E-23 188.7 29.4 229 18-412 20-275 (372)
63 3i2n_A WD repeat-containing pr 99.8 1.7E-19 5.7E-24 190.2 25.6 249 18-412 81-354 (357)
64 4g56_B MGC81050 protein; prote 99.8 1E-19 3.6E-24 197.8 23.8 242 18-424 17-271 (357)
65 1pgu_A Actin interacting prote 99.8 8.8E-19 3E-23 198.9 32.4 305 19-423 221-585 (615)
66 2pm9_A Protein WEB1, protein t 99.8 1.4E-20 4.7E-25 203.6 15.6 244 18-412 127-415 (416)
67 2j04_B YDR362CP, TAU91; beta p 99.8 2.5E-19 8.6E-24 207.1 27.0 280 24-411 180-517 (524)
68 3dw8_B Serine/threonine-protei 99.8 4.6E-19 1.6E-23 193.8 27.2 115 294-423 242-384 (447)
69 3mkq_A Coatomer beta'-subunit; 99.8 1.6E-18 5.4E-23 205.1 33.7 239 17-423 24-271 (814)
70 2pm9_A Protein WEB1, protein t 99.8 7E-20 2.4E-24 198.0 20.3 239 18-416 79-342 (416)
71 2w18_A PALB2, fancn, partner a 99.8 6.6E-19 2.3E-23 193.5 28.1 187 116-409 156-355 (356)
72 3dm0_A Maltose-binding peripla 99.8 8E-19 2.7E-23 206.6 30.7 225 18-412 443-694 (694)
73 1pgu_A Actin interacting prote 99.8 1.3E-18 4.6E-23 197.4 31.4 236 17-421 29-293 (615)
74 3v7d_B Cell division control p 99.8 2.4E-18 8.3E-23 190.5 32.0 225 18-413 174-423 (464)
75 4a11_B DNA excision repair pro 99.8 2.3E-19 7.8E-24 192.2 22.9 227 26-417 22-282 (408)
76 1p22_A F-BOX/WD-repeat protein 99.8 4.5E-19 1.5E-23 196.3 25.8 227 18-412 184-415 (435)
77 2aq5_A Coronin-1A; WD40 repeat 99.8 3.6E-19 1.2E-23 194.4 24.3 225 24-414 54-302 (402)
78 2pm7_B Protein transport prote 99.8 1.2E-18 4.2E-23 183.5 27.2 208 43-412 4-239 (297)
79 3dwl_C Actin-related protein 2 99.8 5.4E-20 1.9E-24 197.4 16.7 230 17-412 22-282 (377)
80 1yfq_A Cell cycle arrest prote 99.8 5.5E-19 1.9E-23 185.8 24.0 242 19-421 25-292 (342)
81 3gre_A Serine/threonine-protei 99.8 3E-19 1E-23 196.2 22.4 116 294-425 185-306 (437)
82 3sfz_A APAF-1, apoptotic pepti 99.8 1.3E-19 4.6E-24 225.3 21.8 244 18-423 973-1219(1249)
83 4e54_B DNA damage-binding prot 99.8 2.5E-19 8.4E-24 199.0 21.3 115 295-424 225-340 (435)
84 2vdu_B TRNA (guanine-N(7)-)-me 99.8 2.7E-18 9.1E-23 191.2 29.6 177 116-409 124-337 (450)
85 3zwl_B Eukaryotic translation 99.8 5.4E-18 1.9E-22 178.6 30.2 230 18-412 87-347 (369)
86 1gxr_A ESG1, transducin-like e 99.8 2.7E-18 9.1E-23 179.1 27.3 235 16-422 19-265 (337)
87 3bg1_A Protein SEC13 homolog; 99.8 9.2E-19 3.1E-23 186.4 23.2 208 41-411 6-247 (316)
88 3dwl_C Actin-related protein 2 99.8 9E-20 3.1E-24 195.7 15.3 125 295-423 116-252 (377)
89 3i2n_A WD repeat-containing pr 99.8 2.7E-18 9.2E-23 180.9 26.2 244 18-415 31-295 (357)
90 3lrv_A PRE-mRNA-splicing facto 99.8 2.1E-18 7.3E-23 184.9 24.7 104 295-413 186-294 (343)
91 3jrp_A Fusion protein of prote 99.8 5.4E-18 1.9E-22 179.7 27.5 213 39-413 2-242 (379)
92 1l0q_A Surface layer protein; 99.8 5.3E-17 1.8E-21 175.0 34.8 232 19-421 3-243 (391)
93 3k26_A Polycomb protein EED; W 99.8 3.9E-18 1.3E-22 179.9 25.3 134 117-354 44-193 (366)
94 1k8k_C P40, ARP2/3 complex 41 99.8 8.3E-18 2.8E-22 178.6 27.3 230 42-423 2-245 (372)
95 2xyi_A Probable histone-bindin 99.8 6.9E-18 2.4E-22 187.3 27.8 242 18-411 141-410 (430)
96 3vu4_A KMHSV2; beta-propeller 99.8 2.1E-18 7.3E-23 187.1 22.9 117 294-413 210-338 (355)
97 3sfz_A APAF-1, apoptotic pepti 99.8 4.4E-17 1.5E-21 202.8 36.7 275 18-411 627-913 (1249)
98 3mkq_A Coatomer beta'-subunit; 99.8 8.2E-18 2.8E-22 198.9 28.7 219 40-425 5-231 (814)
99 3odt_A Protein DOA1; ubiquitin 99.8 3.3E-17 1.1E-21 169.3 29.2 248 39-422 9-266 (313)
100 4h5i_A Guanine nucleotide-exch 99.8 1E-17 3.4E-22 183.0 25.6 114 301-426 197-316 (365)
101 1l0q_A Surface layer protein; 99.8 2.3E-16 7.8E-21 170.0 35.5 234 18-422 44-286 (391)
102 3jro_A Fusion protein of prote 99.8 5.4E-18 1.8E-22 202.8 24.8 248 18-413 22-287 (753)
103 1yfq_A Cell cycle arrest prote 99.8 1.9E-17 6.4E-22 174.2 25.2 222 19-409 71-322 (342)
104 4gga_A P55CDC, cell division c 99.8 9.9E-17 3.4E-21 176.9 31.9 228 117-425 125-367 (420)
105 3f3f_A Nucleoporin SEH1; struc 99.8 4.1E-17 1.4E-21 169.1 26.9 105 295-414 128-252 (351)
106 4ggc_A P55CDC, cell division c 99.8 1.7E-16 5.9E-21 164.7 31.1 229 117-426 45-288 (318)
107 3bws_A Protein LP49; two-domai 99.8 4.6E-16 1.6E-20 170.0 34.6 224 18-411 181-432 (433)
108 4aez_A CDC20, WD repeat-contai 99.8 9.9E-17 3.4E-21 175.6 29.0 227 115-424 111-351 (401)
109 4gq1_A NUP37; propeller, trans 99.8 1.9E-17 6.5E-22 182.1 23.0 257 20-411 104-389 (393)
110 2aq5_A Coronin-1A; WD40 repeat 99.8 5E-17 1.7E-21 177.4 25.8 233 18-412 94-343 (402)
111 4e54_B DNA damage-binding prot 99.8 1.7E-17 5.7E-22 184.2 21.8 269 18-412 132-431 (435)
112 4aow_A Guanine nucleotide-bind 99.8 3.3E-16 1.1E-20 164.1 30.2 215 40-421 30-256 (340)
113 3dw8_B Serine/threonine-protei 99.8 6E-17 2E-21 177.1 24.6 115 294-422 192-327 (447)
114 2oaj_A Protein SNI1; WD40 repe 99.7 8.8E-17 3E-21 196.9 26.6 199 46-413 15-244 (902)
115 2j04_B YDR362CP, TAU91; beta p 99.7 1.2E-17 4E-22 193.1 17.8 116 294-425 280-400 (524)
116 3mmy_A MRNA export factor; mRN 99.7 2.4E-16 8.1E-21 166.0 25.7 261 39-424 30-317 (368)
117 3lrv_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.5E-21 174.7 19.9 111 294-421 142-254 (343)
118 2xyi_A Probable histone-bindin 99.7 1.5E-16 5E-21 176.6 24.9 104 294-413 247-355 (430)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.7 1.2E-16 4.2E-21 177.8 23.9 107 297-420 167-280 (450)
120 2oaj_A Protein SNI1; WD40 repe 99.7 5.4E-16 1.8E-20 189.9 30.5 236 17-410 28-311 (902)
121 3jro_A Fusion protein of prote 99.7 5.6E-16 1.9E-20 185.4 25.8 210 42-413 3-240 (753)
122 3bws_A Protein LP49; two-domai 99.7 5.9E-15 2E-19 161.2 30.1 238 17-418 133-397 (433)
123 2w18_A PALB2, fancn, partner a 99.7 2.3E-15 7.7E-20 165.6 23.0 55 296-351 300-355 (356)
124 4gq1_A NUP37; propeller, trans 99.7 3.6E-15 1.2E-19 163.9 24.4 204 115-423 109-360 (393)
125 2hqs_A Protein TOLB; TOLB, PAL 99.7 4.6E-14 1.6E-18 157.0 32.6 238 18-423 144-398 (415)
126 1pby_B Quinohemoprotein amine 99.6 4.3E-13 1.5E-17 139.9 33.4 99 302-420 220-319 (337)
127 3u4y_A Uncharacterized protein 99.6 1.8E-13 6.3E-18 143.8 29.4 273 18-411 10-304 (331)
128 2j04_A TAU60, YPL007P, hypothe 99.6 5.7E-15 1.9E-19 171.6 16.9 241 16-410 25-296 (588)
129 2j04_A TAU60, YPL007P, hypothe 99.6 1.2E-14 4.3E-19 168.7 16.8 113 295-426 145-269 (588)
130 1nir_A Nitrite reductase; hemo 99.6 2.2E-12 7.4E-17 149.4 32.8 247 18-422 149-420 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.5 1.2E-12 4E-17 145.6 27.6 94 301-412 247-345 (415)
132 2ojh_A Uncharacterized protein 99.5 1.2E-12 4E-17 132.8 24.5 98 299-413 149-260 (297)
133 1nir_A Nitrite reductase; hemo 99.5 1.4E-12 4.8E-17 151.0 28.2 280 18-420 191-523 (543)
134 1ri6_A Putative isomerase YBHE 99.5 9.4E-12 3.2E-16 130.0 31.8 103 299-412 149-263 (343)
135 3vgz_A Uncharacterized protein 99.5 1.4E-11 4.9E-16 129.7 33.0 175 117-413 111-305 (353)
136 1ri6_A Putative isomerase YBHE 99.5 8.7E-12 3E-16 130.3 28.2 103 299-415 198-312 (343)
137 2z3z_A Dipeptidyl aminopeptida 99.5 9.4E-13 3.2E-17 154.2 21.4 233 117-421 101-353 (706)
138 1jmx_B Amine dehydrogenase; ox 99.5 9.9E-12 3.4E-16 130.5 27.1 94 306-419 238-333 (349)
139 2ecf_A Dipeptidyl peptidase IV 99.5 1.4E-12 4.9E-17 153.3 22.9 106 302-421 264-377 (741)
140 3scy_A Hypothetical bacterial 99.4 1.2E-10 4E-15 124.9 32.5 111 296-419 228-345 (361)
141 3hfq_A Uncharacterized protein 99.4 8.6E-11 2.9E-15 124.9 30.3 106 299-418 207-324 (347)
142 2ojh_A Uncharacterized protein 99.4 1.5E-11 5.2E-16 124.5 23.4 181 115-414 20-207 (297)
143 3vgz_A Uncharacterized protein 99.4 1.3E-10 4.5E-15 122.4 28.7 190 117-414 69-265 (353)
144 1xfd_A DIP, dipeptidyl aminope 99.4 6E-12 2E-16 147.4 19.9 278 18-410 28-341 (723)
145 2oit_A Nucleoporin 214KDA; NH2 99.4 8.9E-11 3E-15 131.9 26.1 107 294-414 165-281 (434)
146 3u4y_A Uncharacterized protein 99.4 3.7E-10 1.3E-14 118.5 29.1 180 117-414 20-210 (331)
147 3hfq_A Uncharacterized protein 99.3 6.4E-10 2.2E-14 118.2 30.3 104 299-412 160-272 (347)
148 2ecf_A Dipeptidyl peptidase IV 99.3 8.5E-11 2.9E-15 138.2 24.2 99 299-414 310-416 (741)
149 3o4h_A Acylamino-acid-releasin 99.3 2.7E-11 9.1E-16 139.2 18.2 91 301-409 175-274 (582)
150 1pby_B Quinohemoprotein amine 99.3 3.9E-10 1.3E-14 117.4 24.7 57 117-173 11-74 (337)
151 1xfd_A DIP, dipeptidyl aminope 99.3 4.5E-11 1.5E-15 140.0 17.6 52 116-167 36-103 (723)
152 2z3z_A Dipeptidyl aminopeptida 99.3 1.1E-09 3.8E-14 128.2 28.9 96 299-412 331-436 (706)
153 1jof_A Carboxy-CIS,CIS-muconat 99.3 6.8E-10 2.3E-14 120.2 24.6 102 300-411 166-291 (365)
154 1k32_A Tricorn protease; prote 99.2 1.9E-10 6.6E-15 142.1 22.1 104 300-422 357-471 (1045)
155 2oit_A Nucleoporin 214KDA; NH2 99.2 1.6E-11 5.4E-16 138.0 11.2 108 296-421 113-232 (434)
156 1k32_A Tricorn protease; prote 99.2 2.1E-10 7.1E-15 141.8 21.6 95 299-410 398-501 (1045)
157 1z68_A Fibroblast activation p 99.2 4.4E-11 1.5E-15 140.5 14.8 112 18-168 27-143 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.6E-09 8.9E-14 115.6 25.7 77 323-412 255-342 (365)
159 1jmx_B Amine dehydrogenase; ox 99.2 2.2E-09 7.5E-14 112.6 23.6 57 117-173 21-83 (349)
160 3o4h_A Acylamino-acid-releasin 99.2 4.5E-10 1.5E-14 128.9 19.0 98 303-422 134-237 (582)
161 4a5s_A Dipeptidyl peptidase 4 99.1 1.9E-09 6.6E-14 128.3 17.6 111 18-168 28-145 (740)
162 1z68_A Fibroblast activation p 99.0 8E-10 2.7E-14 129.8 12.9 51 117-167 36-102 (719)
163 2oiz_A Aromatic amine dehydrog 99.0 7.4E-08 2.5E-12 105.1 26.0 95 299-412 219-335 (361)
164 1q7f_A NHL, brain tumor CG1071 99.0 7.7E-07 2.6E-11 91.8 32.3 96 300-412 184-281 (286)
165 3scy_A Hypothetical bacterial 99.0 1.8E-07 6.2E-12 99.9 27.6 107 296-415 172-295 (361)
166 3pe7_A Oligogalacturonate lyas 99.0 5.4E-08 1.9E-12 104.3 22.4 97 301-411 216-329 (388)
167 3dsm_A Uncharacterized protein 98.9 1.2E-06 4.2E-11 93.8 30.6 94 300-410 202-301 (328)
168 4a5s_A Dipeptidyl peptidase 4 98.9 3E-08 1E-12 118.1 18.9 52 117-168 36-105 (740)
169 3pe7_A Oligogalacturonate lyas 98.8 2.1E-07 7.2E-12 99.7 21.9 99 298-412 165-274 (388)
170 3azo_A Aminopeptidase; POP fam 98.8 1.3E-07 4.5E-12 109.7 21.3 104 301-421 217-334 (662)
171 2gop_A Trilobed protease; beta 98.8 1.2E-06 4.1E-11 92.5 26.1 97 300-423 243-341 (347)
172 3c5m_A Oligogalacturonate lyas 98.8 1.2E-07 4E-12 101.3 17.8 101 301-419 264-390 (396)
173 3dsm_A Uncharacterized protein 98.8 8.1E-07 2.8E-11 95.2 23.9 177 117-412 64-254 (328)
174 3fvz_A Peptidyl-glycine alpha- 98.8 1.5E-06 5.2E-11 92.8 25.8 96 299-411 216-322 (329)
175 3c5m_A Oligogalacturonate lyas 98.7 4.4E-07 1.5E-11 96.9 18.2 98 299-412 166-274 (396)
176 3no2_A Uncharacterized protein 98.6 2.6E-05 8.8E-10 82.1 29.8 104 298-419 143-258 (276)
177 3e5z_A Putative gluconolactona 98.6 2.6E-05 9E-10 81.0 28.1 88 300-411 192-284 (296)
178 1qks_A Cytochrome CD1 nitrite 98.6 1.8E-05 6E-10 92.4 28.7 182 116-412 176-374 (567)
179 2dg1_A DRP35, lactonase; beta 98.6 6.6E-05 2.3E-09 78.8 30.4 86 300-402 203-301 (333)
180 1q7f_A NHL, brain tumor CG1071 98.5 1.9E-05 6.4E-10 81.4 25.0 92 300-409 141-236 (286)
181 1xip_A Nucleoporin NUP159; bet 98.5 4.8E-06 1.6E-10 92.9 21.4 82 298-399 143-232 (388)
182 3azo_A Aminopeptidase; POP fam 98.5 4.4E-06 1.5E-10 96.9 21.8 97 302-415 266-371 (662)
183 1qks_A Cytochrome CD1 nitrite 98.5 9.2E-05 3.1E-09 86.4 32.3 57 117-173 218-284 (567)
184 2xdw_A Prolyl endopeptidase; a 98.5 2.9E-05 9.8E-10 91.8 27.8 98 300-413 310-416 (710)
185 3no2_A Uncharacterized protein 98.5 8.2E-06 2.8E-10 85.9 20.2 172 117-412 15-196 (276)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 0.00013 4.4E-09 75.5 28.6 96 300-412 197-300 (314)
187 2oiz_A Aromatic amine dehydrog 98.4 4E-05 1.4E-09 83.5 24.9 56 117-173 31-99 (361)
188 1rwi_B Serine/threonine-protei 98.4 3.9E-05 1.3E-09 77.8 22.3 95 300-411 170-264 (270)
189 3sjl_D Methylamine dehydrogena 98.4 0.0001 3.6E-09 82.1 26.8 104 299-419 245-371 (386)
190 2mad_H Methylamine dehydrogena 98.4 0.00016 5.3E-09 79.7 28.0 100 299-415 232-354 (373)
191 3fvz_A Peptidyl-glycine alpha- 98.3 1.8E-05 6.1E-10 84.4 18.9 99 299-413 164-279 (329)
192 2dg1_A DRP35, lactonase; beta 98.3 0.0003 1E-08 73.8 28.0 95 301-410 162-262 (333)
193 2xdw_A Prolyl endopeptidase; a 98.3 4.2E-05 1.4E-09 90.3 23.5 99 300-411 258-366 (710)
194 3e5z_A Putative gluconolactona 98.3 0.00024 8.1E-09 73.7 26.4 91 301-410 153-245 (296)
195 2gop_A Trilobed protease; beta 98.3 1.9E-05 6.6E-10 83.2 18.0 80 300-402 151-236 (347)
196 2bkl_A Prolyl endopeptidase; m 98.1 0.00013 4.5E-09 86.0 20.4 97 302-414 253-352 (695)
197 1yr2_A Prolyl oligopeptidase; 98.0 0.0004 1.4E-08 82.6 24.6 97 300-412 340-442 (741)
198 2z2n_A Virginiamycin B lyase; 98.0 0.0057 1.9E-07 62.1 30.0 92 300-409 161-253 (299)
199 3g4e_A Regucalcin; six bladed 98.0 0.0028 9.7E-08 66.2 28.0 84 301-401 171-262 (297)
200 2ghs_A AGR_C_1268P; regucalcin 98.0 0.0056 1.9E-07 65.2 30.6 84 301-402 201-293 (326)
201 2qe8_A Uncharacterized protein 98.0 0.00017 5.7E-09 77.5 18.2 72 320-407 246-317 (343)
202 3g4e_A Regucalcin; six bladed 98.0 0.0029 9.9E-08 66.1 27.0 90 321-419 148-237 (297)
203 2hz6_A Endoplasmic reticulum t 97.9 2.8E-06 9.7E-11 93.0 2.8 92 298-412 99-193 (369)
204 1mda_H Methylamine dehydrogena 97.9 0.00077 2.6E-08 74.5 22.2 55 118-173 47-114 (368)
205 2ece_A 462AA long hypothetical 97.9 0.0036 1.2E-07 71.0 27.5 85 323-419 322-432 (462)
206 3hrp_A Uncharacterized protein 97.9 0.0035 1.2E-07 69.5 27.0 75 323-410 324-409 (409)
207 3c75_H MADH, methylamine dehyd 97.8 0.00056 1.9E-08 77.1 19.5 56 117-173 99-167 (426)
208 2bkl_A Prolyl endopeptidase; m 97.8 0.00052 1.8E-08 80.9 19.3 94 300-412 201-305 (695)
209 2z2n_A Virginiamycin B lyase; 97.8 0.046 1.6E-06 55.3 31.7 92 300-411 203-295 (299)
210 3nol_A Glutamine cyclotransfer 97.8 0.0033 1.1E-07 66.5 22.6 164 117-401 65-245 (262)
211 2iwa_A Glutamine cyclotransfer 97.7 0.0059 2E-07 64.6 24.2 175 117-412 44-238 (266)
212 2qc5_A Streptogramin B lactona 97.7 0.057 2E-06 54.6 30.9 92 300-409 166-258 (300)
213 1rwi_B Serine/threonine-protei 97.7 0.00094 3.2E-08 67.5 16.8 95 300-411 128-222 (270)
214 1kb0_A Quinohemoprotein alcoho 97.7 0.0034 1.2E-07 74.5 24.0 105 297-419 333-515 (677)
215 1xip_A Nucleoporin NUP159; bet 97.7 0.00019 6.6E-09 80.0 12.3 89 299-412 104-192 (388)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 97.7 0.0077 2.6E-07 62.0 23.8 99 301-412 153-257 (314)
217 1yr2_A Prolyl oligopeptidase; 97.6 0.0032 1.1E-07 74.7 22.7 98 300-412 242-351 (741)
218 3nok_A Glutaminyl cyclase; bet 97.6 0.003 1E-07 67.0 19.3 162 117-400 75-254 (268)
219 3sjl_D Methylamine dehydrogena 97.6 0.00028 9.5E-09 78.7 11.3 104 300-418 58-176 (386)
220 1kb0_A Quinohemoprotein alcoho 97.5 0.0025 8.6E-08 75.6 20.1 84 300-400 456-540 (677)
221 2ece_A 462AA long hypothetical 97.5 0.014 4.6E-07 66.3 23.8 104 298-411 225-352 (462)
222 2qc5_A Streptogramin B lactona 97.4 0.11 3.9E-06 52.4 28.4 90 300-409 208-298 (300)
223 2ghs_A AGR_C_1268P; regucalcin 97.4 0.06 2E-06 57.1 26.8 97 301-409 161-258 (326)
224 3mbr_X Glutamine cyclotransfer 97.4 0.029 1E-06 58.5 23.2 57 117-173 43-103 (243)
225 3hrp_A Uncharacterized protein 97.3 0.024 8.3E-07 62.7 23.7 98 300-411 239-354 (409)
226 2mad_H Methylamine dehydrogena 97.3 0.0015 5.1E-08 71.8 13.7 94 302-412 48-157 (373)
227 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.26 8.7E-06 52.6 35.1 94 297-412 245-338 (376)
228 1yiq_A Quinohemoprotein alcoho 97.3 0.031 1.1E-06 66.4 24.8 57 346-419 457-513 (689)
229 1mda_H Methylamine dehydrogena 97.2 0.00075 2.6E-08 74.6 9.5 94 302-411 47-158 (368)
230 3iuj_A Prolyl endopeptidase; h 97.1 0.014 4.8E-07 68.9 19.9 95 300-412 304-406 (693)
231 3c75_H MADH, methylamine dehyd 97.1 0.0015 5E-08 73.8 10.1 98 301-413 99-211 (426)
232 1yiq_A Quinohemoprotein alcoho 97.0 0.034 1.2E-06 66.1 21.9 57 117-173 80-149 (689)
233 2hz6_A Endoplasmic reticulum t 96.9 0.00025 8.7E-09 77.5 2.2 93 298-412 56-150 (369)
234 2iwa_A Glutamine cyclotransfer 96.9 0.092 3.2E-06 55.4 21.7 99 299-413 84-183 (266)
235 3dr2_A Exported gluconolactona 96.9 0.15 5.1E-06 53.1 22.8 92 301-409 169-265 (305)
236 1fwx_A Nitrous oxide reductase 96.8 0.032 1.1E-06 65.2 18.8 102 301-411 254-361 (595)
237 3q7m_A Lipoprotein YFGL, BAMB; 96.7 0.82 2.8E-05 48.6 30.3 96 296-412 193-297 (376)
238 1kv9_A Type II quinohemoprotei 96.7 0.082 2.8E-06 62.5 21.5 57 117-173 76-145 (668)
239 2ad6_A Methanol dehydrogenase 96.5 0.2 6.8E-06 58.1 22.5 29 386-414 469-497 (571)
240 3nok_A Glutaminyl cyclase; bet 96.5 0.11 3.7E-06 55.1 18.2 97 299-412 114-211 (268)
241 3nol_A Glutamine cyclotransfer 96.5 0.077 2.6E-06 56.0 17.0 97 299-412 105-202 (262)
242 1kv9_A Type II quinohemoprotei 96.4 0.13 4.5E-06 60.7 20.3 86 298-400 435-521 (668)
243 3iuj_A Prolyl endopeptidase; h 96.3 0.016 5.3E-07 68.5 12.2 110 299-422 153-280 (693)
244 3hxj_A Pyrrolo-quinoline quino 96.3 0.28 9.5E-06 50.6 20.2 91 301-412 235-325 (330)
245 3dr2_A Exported gluconolactona 96.1 0.032 1.1E-06 58.3 11.7 84 298-397 64-147 (305)
246 2qe8_A Uncharacterized protein 96.1 0.056 1.9E-06 57.7 13.8 109 300-410 92-223 (343)
247 3mbr_X Glutamine cyclotransfer 96.1 0.6 2.1E-05 48.6 21.1 97 299-412 83-180 (243)
248 1flg_A Protein (quinoprotein e 96.0 0.22 7.6E-06 57.9 19.5 83 299-400 464-549 (582)
249 2xzh_A Clathrin heavy chain 1; 95.9 2.7 9.3E-05 46.0 26.1 48 117-164 87-135 (365)
250 3amr_A 3-phytase; beta-propell 95.7 1.6 5.5E-05 47.9 23.3 100 300-410 152-262 (355)
251 3hxj_A Pyrrolo-quinoline quino 95.3 0.11 3.6E-06 53.8 11.9 87 299-408 155-241 (330)
252 1w6s_A Methanol dehydrogenase 95.3 1.5 5.1E-05 51.3 22.8 25 389-413 481-505 (599)
253 1bpo_A Protein (clathrin); cla 95.1 6 0.00021 44.8 26.0 203 117-419 86-297 (494)
254 2ad6_A Methanol dehydrogenase 95.1 0.53 1.8E-05 54.5 18.0 82 299-397 442-523 (571)
255 1flg_A Protein (quinoprotein e 94.5 3.2 0.00011 48.2 22.8 56 118-173 79-145 (582)
256 1fwx_A Nitrous oxide reductase 93.5 0.26 8.8E-06 57.7 10.8 107 298-412 172-309 (595)
257 1w6s_A Methanol dehydrogenase 93.3 4.8 0.00017 47.0 21.2 57 117-173 73-149 (599)
258 1ijq_A LDL receptor, low-densi 92.8 11 0.00037 39.6 26.2 94 301-410 99-194 (316)
259 1npe_A Nidogen, entactin; glyc 92.7 9.1 0.00031 38.4 31.1 72 322-412 167-239 (267)
260 1k3i_A Galactose oxidase precu 92.6 2.5 8.5E-05 49.3 17.6 49 118-166 266-325 (656)
261 2fp8_A Strictosidine synthase; 92.3 12 0.00041 38.8 25.7 73 324-411 231-313 (322)
262 2xe4_A Oligopeptidase B; hydro 92.0 0.39 1.3E-05 57.3 10.0 96 301-412 201-305 (751)
263 1npe_A Nidogen, entactin; glyc 90.7 4.5 0.00015 40.7 15.0 96 299-410 56-154 (267)
264 2p4o_A Hypothetical protein; p 90.6 2 6.7E-05 44.7 12.5 81 310-410 21-103 (306)
265 3v65_B Low-density lipoprotein 90.5 22 0.00075 38.5 23.2 94 302-411 182-277 (386)
266 3pbp_A Nucleoporin NUP82; beta 89.5 2.6 9E-05 47.5 12.8 108 300-411 40-158 (452)
267 3p5b_L Low density lipoprotein 87.6 35 0.0012 37.1 25.9 94 301-411 181-277 (400)
268 4a2l_A BT_4663, two-component 87.2 54 0.0018 38.7 32.6 97 299-411 375-480 (795)
269 3v64_C Agrin; beta propeller, 86.9 35 0.0012 36.3 23.9 95 301-411 138-234 (349)
270 3ei3_A DNA damage-binding prot 86.5 24 0.00084 44.4 20.4 96 301-411 904-999 (1158)
271 1xi4_A Clathrin heavy chain; a 86.3 9.5 0.00033 49.0 16.2 48 117-164 86-134 (1630)
272 2p9w_A MAL S 1 allergenic prot 84.0 3.9 0.00013 44.5 10.1 98 299-410 98-214 (334)
273 3sov_A LRP-6, low-density lipo 83.8 47 0.0016 35.0 22.9 95 301-411 101-197 (318)
274 2xe4_A Oligopeptidase B; hydro 83.6 2.1 7E-05 51.1 8.5 75 319-411 170-256 (751)
275 3qqz_A Putative uncharacterize 82.1 13 0.00045 38.6 12.9 101 297-410 45-150 (255)
276 2fp8_A Strictosidine synthase; 81.9 13 0.00045 38.4 13.0 86 299-400 163-248 (322)
277 3v65_B Low-density lipoprotein 81.2 64 0.0022 34.7 29.6 101 301-418 225-325 (386)
278 3sre_A PON1, serum paraoxonase 80.9 9.1 0.00031 41.8 11.6 96 300-413 138-254 (355)
279 2p4o_A Hypothetical protein; p 78.8 24 0.00081 36.4 13.7 95 299-410 51-146 (306)
280 1k3i_A Galactose oxidase precu 78.7 4.7 0.00016 47.0 9.0 95 302-412 220-324 (656)
281 3v9f_A Two-component system se 78.1 1.1E+02 0.0039 35.8 25.6 75 321-411 494-568 (781)
282 4a2l_A BT_4663, two-component 76.7 1.2E+02 0.0042 35.5 31.8 91 300-411 426-526 (795)
283 3amr_A 3-phytase; beta-propell 75.9 9.6 0.00033 41.7 9.8 98 298-411 47-162 (355)
284 3ei3_A DNA damage-binding prot 74.8 1.8E+02 0.0062 36.5 31.5 91 302-411 493-591 (1158)
285 3zwu_A Alkaline phosphatase PH 73.6 8 0.00027 45.2 9.0 60 325-398 479-548 (592)
286 3m0c_C LDL receptor, low-densi 72.9 1.7E+02 0.0057 35.2 25.6 96 300-411 492-589 (791)
287 3kya_A Putative phosphatase; s 72.0 99 0.0034 35.2 17.4 29 323-351 311-339 (496)
288 3tc9_A Hypothetical hydrolase; 71.9 23 0.00078 39.1 11.9 94 301-411 159-257 (430)
289 2p9w_A MAL S 1 allergenic prot 71.7 23 0.00079 38.4 11.5 101 299-414 33-169 (334)
290 3tc9_A Hypothetical hydrolase; 71.3 12 0.00043 41.2 9.6 72 324-411 228-301 (430)
291 3p5b_L Low density lipoprotein 70.4 1.2E+02 0.0042 32.7 32.8 102 302-418 226-327 (400)
292 3m0c_C LDL receptor, low-densi 70.1 1.9E+02 0.0065 34.7 32.8 103 301-418 537-639 (791)
293 2ism_A Putative oxidoreductase 68.4 24 0.00081 37.7 10.8 93 299-400 49-154 (352)
294 3a9g_A Putative uncharacterize 67.0 29 0.00099 37.2 11.1 93 299-400 47-154 (354)
295 3qqz_A Putative uncharacterize 66.9 1.2E+02 0.0041 31.2 29.3 73 322-408 173-250 (255)
296 4hw6_A Hypothetical protein, I 66.2 46 0.0016 36.7 12.9 104 298-408 247-371 (433)
297 3das_A Putative oxidoreductase 65.9 41 0.0014 36.4 12.1 55 322-391 32-90 (347)
298 1cru_A Protein (soluble quinop 65.6 28 0.00095 38.9 11.0 64 323-399 28-98 (454)
299 3pbp_A Nucleoporin NUP82; beta 64.8 25 0.00084 39.7 10.1 82 320-415 123-214 (452)
300 1ijq_A LDL receptor, low-densi 64.8 1.3E+02 0.0046 31.0 33.1 82 322-418 164-245 (316)
301 2ism_A Putative oxidoreductase 64.7 32 0.0011 36.7 10.9 70 323-410 32-113 (352)
302 3v64_C Agrin; beta propeller, 64.5 1.5E+02 0.005 31.3 30.8 79 323-418 204-282 (349)
303 4hw6_A Hypothetical protein, I 62.9 18 0.00061 40.1 8.7 73 324-412 230-305 (433)
304 4a9v_A PHOX; hydrolase, beta-p 56.0 29 0.00098 40.5 8.9 62 323-398 477-548 (592)
305 1cru_A Protein (soluble quinop 54.9 88 0.003 34.8 12.6 93 301-401 48-164 (454)
306 3a9g_A Putative uncharacterize 51.6 50 0.0017 35.3 9.7 59 323-399 30-94 (354)
307 3v9f_A Two-component system se 48.7 3.8E+02 0.013 31.2 26.1 72 322-410 539-610 (781)
308 2g8s_A Glucose/sorbosone dehyd 45.8 75 0.0026 33.8 9.9 95 299-400 37-149 (353)
309 1n7d_A LDL receptor, low-densi 43.1 47 0.0016 39.2 8.4 96 299-411 473-571 (699)
310 3sre_A PON1, serum paraoxonase 42.1 73 0.0025 34.6 9.1 81 301-398 203-284 (355)
311 3kya_A Putative phosphatase; s 40.1 1.1E+02 0.0038 34.7 10.5 65 323-402 140-214 (496)
312 2xbg_A YCF48-like protein; pho 38.9 2.2E+02 0.0077 29.4 12.1 72 319-408 160-231 (327)
313 4a0p_A LRP6, LRP-6, low-densit 38.1 5.2E+02 0.018 29.8 24.4 180 75-410 7-196 (628)
314 1n7d_A LDL receptor, low-densi 36.7 70 0.0024 37.7 8.4 97 301-412 519-615 (699)
315 3sov_A LRP-6, low-density lipo 36.5 3.8E+02 0.013 27.8 32.3 79 323-418 167-245 (318)
316 4gq2_M Nucleoporin NUP120; bet 35.8 77 0.0026 38.9 8.9 36 382-417 237-272 (950)
317 3das_A Putative oxidoreductase 35.3 2.2E+02 0.0076 30.6 11.5 101 295-400 47-159 (347)
318 2vpj_A Kelch-like protein 12; 34.4 3.6E+02 0.012 26.8 17.8 50 117-166 78-139 (301)
319 1tl2_A L10, protein (tachylect 34.1 43 0.0015 34.6 5.2 72 323-408 42-113 (236)
320 3q6k_A 43.2 kDa salivary prote 33.7 4E+02 0.014 29.1 13.3 54 301-354 123-191 (381)
321 2wg3_C Hedgehog-interacting pr 32.8 3.4E+02 0.012 30.2 12.9 101 298-402 33-160 (463)
322 4gq2_M Nucleoporin NUP120; bet 31.5 1.2E+02 0.0041 37.2 9.5 31 323-354 237-267 (950)
323 4fhn_B Nucleoporin NUP120; pro 30.7 55 0.0019 40.9 6.5 36 382-417 239-274 (1139)
324 3s94_A LRP-6, low-density lipo 29.5 5.2E+02 0.018 29.7 14.2 97 300-411 17-115 (619)
325 1tl2_A L10, protein (tachylect 29.0 89 0.003 32.2 6.6 66 325-404 91-156 (236)
326 2g8s_A Glucose/sorbosone dehyd 27.7 2.2E+02 0.0074 30.1 9.8 83 313-411 263-352 (353)
327 2xbg_A YCF48-like protein; pho 25.5 1.9E+02 0.0067 29.9 8.8 60 323-400 123-182 (327)
328 2xzh_A Clathrin heavy chain 1; 24.4 7.2E+02 0.025 27.1 29.1 105 16-174 76-198 (365)
329 3sbq_A Nitrous-oxide reductase 23.9 1.5E+02 0.005 34.7 7.8 102 302-411 299-408 (638)
330 2vpj_A Kelch-like protein 12; 23.2 5.6E+02 0.019 25.4 18.4 52 301-354 128-185 (301)
331 3s94_A LRP-6, low-density lipo 22.7 9E+02 0.031 27.7 27.7 76 322-414 171-246 (619)
332 3ii7_A Kelch-like protein 7; p 22.5 5.8E+02 0.02 25.4 19.6 50 117-166 70-129 (306)
333 1zgk_A Kelch-like ECH-associat 21.3 6.3E+02 0.021 25.3 17.0 50 117-166 90-148 (308)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.9e-26 Score=249.05 Aligned_cols=227 Identities=22% Similarity=0.313 Sum_probs=177.2
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+..++|+.|.++|++|||+++ ...+...+.+.+..+.+++.+ .++++++.+
T Consensus 29 ~dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------------ 79 (355)
T 3vu4_A 29 QDQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRT--------------NYVAFVTGV------------ 79 (355)
T ss_dssp TTSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTS--------------SEEEEECSS------------
T ss_pred CCCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCCC--------------CEEEEEECC------------
Confidence 347899999999999999986 344555555668888887642 366666542
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCC-ceEEEEEcC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATL-EIEYAILTN 174 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVs~~~~I~IwDl~t~-~~l~tL~t~ 174 (828)
+++|++||+++++++.++.++.+|.+|+++++.++++.+++|++||+.+. +.+.++.+
T Consensus 80 --------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 80 --------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp --------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-
T ss_pred --------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-
Confidence 16899999999999999999999999999999999999999999999987 55444332
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
+ . +.+++++.+||++
T Consensus 139 ~--~------------~~~~~s~~~la~~--------------------------------------------------- 153 (355)
T 3vu4_A 139 F--G------------GVCEFSNGLLVYS--------------------------------------------------- 153 (355)
T ss_dssp E--E------------EEEEEETTEEEEE---------------------------------------------------
T ss_pred C--C------------ceEEEEccEEEEe---------------------------------------------------
Confidence 1 0 1122222222221
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---------------E-EEEec
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---------------V-IAQFR 318 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~---------------~-i~~f~ 318 (828)
++..+|.|+|||+.+++ + +..+.
T Consensus 154 -----------------------------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 154 -----------------------------------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp -----------------------------------------ESSCTTCEEEEECCC------------------CCEEEC
T ss_pred -----------------------------------------CCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 13457889999999865 2 78899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 319 aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
+|..+|.+|+|+|||++|||||.||+.|+|||+.++ ..+.++++|.....|.+++|+||+++||++
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence 999999999999999999999999975899999876 567788767334579999999999999999
Q ss_pred eCCCcEEEEecCCC
Q 003336 399 SSRGTSHLFAINPL 412 (828)
Q Consensus 399 S~DGTVhIwdl~~~ 412 (828)
+.|++|+|||+...
T Consensus 259 s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 259 SDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCEEEEEESSCC
T ss_pred ECCCEEEEEEccCC
Confidence 99999999999764
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=6.3e-25 Score=239.21 Aligned_cols=228 Identities=17% Similarity=0.235 Sum_probs=168.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeE---eeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHD---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~e---llS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+.+++.+.++.++|||++....... .+..|.+.|+++++.|+. .+|+.++. |
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--------------~~l~sgs~----------d- 148 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--------------TQAVSGSK----------D- 148 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET----------T-
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--------------CEEEEEeC----------C-
Confidence 5677777777799999987432221 233689999999999853 25554432 1
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCceEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEY 169 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~ 169 (828)
++|++||++++++++++. +...|.+++|+ ..+|+. +.|++|++||+.+++...
T Consensus 149 ----------------------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 149 ----------------------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp ----------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred ----------------------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 679999999999999997 46799999996 346655 568899999999998877
Q ss_pred EEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
++..... +..+. .+++.. . ++
T Consensus 207 ~~~~~~~------------~~~~~-----~~~~~p-------------~-------------~~---------------- 227 (344)
T 4gqb_B 207 QIGCSAP------------GYLPT-----SLAWHP-------------Q-------------QS---------------- 227 (344)
T ss_dssp ECC----------------CCCEE-----EEEECS-------------S-------------CT----------------
T ss_pred eeeccee------------eccce-----eeeecC-------------C-------------CC----------------
Confidence 6643210 00001 122221 0 00
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
..++++..+|.|+|||+.+++++.+|.+|..+|.+|+|
T Consensus 228 ------------------------------------------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 228 ------------------------------------------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ------------------------------------------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ------------------------------------------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 01234567899999999999999999999999999999
Q ss_pred cCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEEeCCCcEEEE
Q 003336 330 DPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (828)
Q Consensus 330 SPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S~DGTVhIw 407 (828)
+|+| ++|||||.||+ |+|||+.++ .++++ +||. ..|++|+||||++ +|++++.||+|++|
T Consensus 266 sp~g~~~lasgs~D~~-i~vwd~~~~---------------~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCS-LAVLDSSLS---------------ELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp CSSSSCCEEEEETTSC-EEEECTTCC---------------EEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred ccCCCeEEEEEeCCCe-EEEEECCCC---------------cEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 9998 58999999998 899999875 34455 4665 3599999999986 57799999999999
Q ss_pred ecCC
Q 003336 408 AINP 411 (828)
Q Consensus 408 dl~~ 411 (828)
++.+
T Consensus 328 ~v~~ 331 (344)
T 4gqb_B 328 VVPT 331 (344)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9975
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-24 Score=232.48 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=182.4
Q ss_pred cEEEEEccCCeEEEEecCCC-ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 19 RVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~-~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.++..+.++.++|||+.... .....+..|.+.|.++.+.|+. ++++.++.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~--------------~~l~s~s~--------------- 100 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL--------------PIAASSSL--------------- 100 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS--------------SEEEEEET---------------
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC--------------CEEEEEeC---------------
Confidence 46666777789999998632 1222456789999999987642 35554432
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
+++|++||+++++++..+.. +..|.+++|+ +++|++ +.+++|++||+.+++...++..
T Consensus 101 ------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 101 ------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred ------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 27899999999999999875 5678899997 567776 4678999999999998888766
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
+... + .-++|.. +|.
T Consensus 163 ~~~~---------------v----~~~~~sp---------------------------dg~------------------- 177 (321)
T 3ow8_A 163 RGKF---------------I----LSIAYSP---------------------------DGK------------------- 177 (321)
T ss_dssp SSSC---------------E----EEEEECT---------------------------TSS-------------------
T ss_pred CCce---------------E----EEEEECC---------------------------CCC-------------------
Confidence 4210 0 1123321 111
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
.++++..+|.|+|||+.+++++..+++|..+|.+|+|+|+|
T Consensus 178 ---------------------------------------~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 178 ---------------------------------------YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred ---------------------------------------EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 12334568899999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
++||+|+.||+ |+|||+..+ ..+..+ .++. ..|.+++|+||+++|++++.|++|+|||+....
T Consensus 219 ~~l~s~s~dg~-i~iwd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 219 QLLVTASDDGY-IKIYDVQHA--------------NLAGTL-SGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEECTTSC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEcCCCe-EEEEECCCc--------------ceeEEE-cCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 99999999998 899999875 334455 4554 459999999999999999999999999998876
Q ss_pred CceeeccCCCC
Q 003336 414 GSVNFQPTDAN 424 (828)
Q Consensus 414 g~~~~~~H~~~ 424 (828)
....+..|...
T Consensus 282 ~~~~~~~h~~~ 292 (321)
T 3ow8_A 282 CVHTFFDHQDQ 292 (321)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCc
Confidence 66777777543
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=2.4e-23 Score=223.75 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=181.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.++..+.++.++|||+.. +.....+..|.+.|.++++.|+. .+|+.++.
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~s~~~--------------- 117 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG--------------NYVACGGL--------------- 117 (340)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC--------------CEEEEEeC---------------
Confidence 3455555666699999987 45556677789999999998753 25554442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCc----EEEEEe-CCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS----YVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~----~V~tL~-f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
+++|++||+.+++ ....+. +...|.++.|+ +++++.+.+++|++||+.+++++.+
T Consensus 118 ------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 118 ------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp ------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE
Confidence 1789999998863 445554 46789999996 4555667889999999999998888
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+..|... + .-|++.. ++.
T Consensus 180 ~~~h~~~---------------v----~~~~~~~---------------------------~~~---------------- 197 (340)
T 1got_B 180 FTGHTGD---------------V----MSLSLAP---------------------------DTR---------------- 197 (340)
T ss_dssp ECCCSSC---------------E----EEEEECT---------------------------TSS----------------
T ss_pred EcCCCCc---------------e----EEEEECC---------------------------CCC----------------
Confidence 8665321 1 1122321 000
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
.+++++.||.|+|||+.+++++..|.+|..+|.+|+|+
T Consensus 198 ------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~ 235 (340)
T 1got_B 198 ------------------------------------------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235 (340)
T ss_dssp ------------------------------------------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred ------------------------------------------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence 12345678999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|+|++||+|+.||+ |+|||+..+ ..+..+........|.+++|+|||++|++++.||+|+|||+.
T Consensus 236 p~~~~l~s~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 236 PNGNAFATGSDDAT-CRLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp TTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEcCCCc-EEEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 99999999999998 899999875 333444322222359999999999999999999999999998
Q ss_pred CCCCceeeccCCCCC
Q 003336 411 PLGGSVNFQPTDANF 425 (828)
Q Consensus 411 ~~gg~~~~~~H~~~~ 425 (828)
.......+.+|...+
T Consensus 301 ~~~~~~~~~~h~~~v 315 (340)
T 1got_B 301 KADRAGVLAGHDNRV 315 (340)
T ss_dssp TCCEEEEEECCSSCE
T ss_pred cCcEeeEeecCCCcE
Confidence 876667888886543
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.93 E-value=1.3e-23 Score=232.44 Aligned_cols=237 Identities=14% Similarity=0.240 Sum_probs=185.7
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.++..+.++.++|||++. +.....+..|.++|.++.+.|+. .+|+.++. |
T Consensus 122 ~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~--------------~~l~sgs~----------D----- 171 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSG--------------KLLASCSA----------D----- 171 (410)
T ss_dssp EEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTS--------------SEEEEEET----------T-----
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCC--------------CEEEEEeC----------C-----
Confidence 444445566699999987 56777788899999999998742 25655542 1
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
++|++||+.++++++++.. ...|.+++|+ +++|++ +.+++|++||+.+++++.++..|
T Consensus 172 ------------------~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 172 ------------------MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp ------------------SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ------------------CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 6799999999999998864 6699999996 456655 67889999999999998888766
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
... + +.+++.. ++.
T Consensus 234 ~~~---------------v----~~~~~~~---------------------------~g~-------------------- 247 (410)
T 1vyh_C 234 REW---------------V----RMVRPNQ---------------------------DGT-------------------- 247 (410)
T ss_dssp SSC---------------E----EEEEECT---------------------------TSS--------------------
T ss_pred Ccc---------------E----EEEEECC---------------------------CCC--------------------
Confidence 321 1 1122221 011
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC--
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-- 332 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd-- 332 (828)
.+++++.||.|+|||+.+++++..+.+|...|.+++|+|+
T Consensus 248 --------------------------------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 248 --------------------------------------LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp --------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred --------------------------------------EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence 1234567899999999999999999999999999999997
Q ss_pred ------------------CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCE
Q 003336 333 ------------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (828)
Q Consensus 333 ------------------G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 394 (828)
|.+|+||+.||+ |+|||+.++ ..+..+. |+. ..|.+++|+|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTLV-GHD-NWVRGVLFHSGGKF 352 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSC
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEEE-CCC-CcEEEEEEcCCCCE
Confidence 779999999997 899999876 4555663 554 35999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 395 IMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 395 LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
|++++.||+|+|||+........+.+|...
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~ 382 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 999999999999999887777788888654
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.9e-23 Score=221.61 Aligned_cols=223 Identities=14% Similarity=0.194 Sum_probs=173.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++..+.++.++|||+.. +.....+..+...|..+++.|+. .+|+.++.
T Consensus 93 ~~l~s~s~D~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~g~~--------------- 142 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDS--------------QYLATGTH--------------- 142 (321)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCTTCCCCEEECTTS--------------SEEEEECT---------------
T ss_pred CEEEEEeCCCcEEEEECCC-CCEEEEEeCCCccEEEEEECCCC--------------CEEEEEcC---------------
Confidence 3455556677799999987 45555666677788888888753 24543331
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
.++|++||+++++.+..+.. ...|.+++|+ +++||+ +.++.|++||+.+++.++++..
T Consensus 143 ------------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 143 ------------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp ------------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ------------------CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 27899999999999988876 4589999997 567776 5688999999999999888876
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|..+ + +-|+|.. ++.
T Consensus 205 h~~~------------v-------~~l~~sp---------------------------d~~------------------- 219 (321)
T 3ow8_A 205 HAMP------------I-------RSLTFSP---------------------------DSQ------------------- 219 (321)
T ss_dssp CSSC------------C-------CEEEECT---------------------------TSC-------------------
T ss_pred cCCc------------e-------eEEEEcC---------------------------CCC-------------------
Confidence 5321 1 1233331 011
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
.+++++.||.|+|||+.+++.+..+.+|..+|.+|+|+|+|
T Consensus 220 ---------------------------------------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 220 ---------------------------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp ---------------------------------------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 12345678999999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
++|++|+.||+ |+|||+.++ ..+.++. ++. ..|.+++|+||+++|++++.||+|+|||+
T Consensus 261 ~~l~s~s~D~~-v~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 261 THFVSSSSDKS-VKVWDVGTR--------------TCVHTFF-DHQ-DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SEEEEEETTSC-EEEEETTTT--------------EEEEEEC-CCS-SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEeCCCc-EEEEeCCCC--------------EEEEEEc-CCC-CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999998 899999876 4556663 443 45999999999999999999999999997
No 7
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=2.5e-23 Score=227.32 Aligned_cols=227 Identities=14% Similarity=0.141 Sum_probs=165.2
Q ss_pred cCCeEEEEecCCCceeEeeee--------ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 26 RSGFQVWDVEEADNVHDLVSR--------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 26 ~~G~qVWdv~~~~~~~ellS~--------hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
++.+++|+++...+..+.+.. ++..|++++|.|++. +||+++++
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~--------------~la~as~~-------------- 154 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT--------------VAAIASSK-------------- 154 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS--------------CEEEEESC--------------
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC--------------EEEEEECC--------------
Confidence 445899999875544444432 245588899988642 56666642
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.+++|+|||+++++++.++++...|++|+|+ +++|+++.++.+.+|+..+++.+.......
T Consensus 155 -----------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 155 -----------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp -----------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred -----------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence 2389999999999999999999999999997 689999889999999999988765442210
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
. ...+ +-++|.. ++..+ +.+
T Consensus 218 ~-------------~~~v----~~v~fsp---------------------------dg~~l-----------~~~----- 237 (365)
T 4h5i_A 218 K-------------NWSL----SKINFIA---------------------------DDTVL-----------IAA----- 237 (365)
T ss_dssp T-------------TEEE----EEEEEEE---------------------------TTEEE-----------EEE-----
T ss_pred C-------------CCCE----EEEEEcC---------------------------CCCEE-----------EEE-----
Confidence 0 0011 1233331 11111 000
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEEcC
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDP 331 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~----i~~f~aH~~pIsaLaFSP 331 (828)
+ .+......+++||+..... ...+..|..+|++|+|||
T Consensus 238 -------------------------s-------------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 238 -------------------------S-------------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp -------------------------E-------------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred -------------------------e-------------cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 0 0011123678888876543 456789999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
||++||+|+.||+ |+|||+.++ ..+.++.+||.. .|++|+|||||++||++|.|+||+||+|.+
T Consensus 280 dg~~lasgs~D~~-V~iwd~~~~--------------~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 280 KGELAVLASNDNS-IALVKLKDL--------------SMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEETTSC-EEEEETTTT--------------EEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCceEEEcCCCE-EEEEECCCC--------------cEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998 899999876 566677678764 599999999999999999999999999954
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=6.9e-23 Score=216.79 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=177.5
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.++..++++.++|||++. +.....+..|.++|+++++.|+. .+|+.++.
T Consensus 26 ~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~s~s~--------------- 75 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD--------------- 75 (304)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCC--------------CEEEEECC---------------
Confidence 4556666677799999987 45556677789999999998852 25554442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce-EEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-EYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~-l~tL~ 172 (828)
+++|++||+.+++++.+++. ...|.+|+|+ +++|++ +.+++|++||+.+... ..++.
T Consensus 76 ------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 76 ------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred ------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 17899999999999999975 6789999997 556665 6688999999988743 44554
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|... + ..++|.+. ++
T Consensus 138 ~h~~~---------------v----~~v~~~p~--------------------------~~------------------- 153 (304)
T 2ynn_A 138 GHEHF---------------V----MCVAFNPK--------------------------DP------------------- 153 (304)
T ss_dssp CCCSC---------------E----EEEEECTT--------------------------CT-------------------
T ss_pred ccCCc---------------E----EEEEECCC--------------------------CC-------------------
Confidence 44210 1 11233210 00
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP 331 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSP 331 (828)
..+++++.||.|+|||+.+..+...+. .|...|.+++|+|
T Consensus 154 ---------------------------------------~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 154 ---------------------------------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp ---------------------------------------TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred ---------------------------------------CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 013445678999999999887766665 5668999999987
Q ss_pred --CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 332 --SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 332 --dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
++.+||||+.||+ |+|||+.++ ..+.++. |+. ..|.+++|+|++++||+++.||+|+|||+
T Consensus 195 ~~~~~~l~s~s~D~~-i~iWd~~~~--------------~~~~~~~-~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 195 LPDKPYMITASDDLT-IKIWDYQTK--------------SCVATLE-GHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp STTCCEEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEcCCCe-EEEEeCCCC--------------ccceeeC-CCC-CCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 7889999999997 899999876 4566663 554 35999999999999999999999999999
Q ss_pred CCCCCceeeccCC
Q 003336 410 NPLGGSVNFQPTD 422 (828)
Q Consensus 410 ~~~gg~~~~~~H~ 422 (828)
.++.....+..|.
T Consensus 258 ~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 258 STYKVEKTLNVGL 270 (304)
T ss_dssp TTCCEEEEECCSS
T ss_pred CCCceeeeccCCC
Confidence 9876666776654
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.92 E-value=1.1e-23 Score=229.25 Aligned_cols=234 Identities=12% Similarity=0.136 Sum_probs=163.1
Q ss_pred CCcEEEEEccCCeEEEEecCCCcee---EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVH---DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~---ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
..++|+.+.++.++|||+....... -....|.++|.++++.|+. .+|+.++.
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------~~l~sgs~----------- 159 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--------------TQAVSGGK----------- 159 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS--------------SEEEEEET-----------
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC--------------CEEEEEeC-----------
Confidence 3678888888889999998643221 1123588999999998853 24544432
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEE-EEeCCEEEEEECCCCceE
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVA-ICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLA-Vs~~~~I~IwDl~t~~~l 168 (828)
+++|++||+++++++..++. ...|.+|+|+ ..+++ .+.+++|++||+.+++.+
T Consensus 160 ----------------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 160 ----------------------DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp ----------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred ----------------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 16799999999999999975 6799999996 23444 467889999999988755
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
..+..... ...+ ..|+|.++ .+
T Consensus 218 ~~~~~~~~------------~~~v-----~~v~~sp~--------------------------~~--------------- 239 (357)
T 4g56_B 218 TRIDFCAS------------DTIP-----TSVTWHPE--------------------------KD--------------- 239 (357)
T ss_dssp CBCCCTTC------------CSCE-----EEEEECTT--------------------------ST---------------
T ss_pred eeeeeccc------------cccc-----cchhhhhc--------------------------cc---------------
Confidence 44322100 0000 11222210 00
Q ss_pred ceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003336 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLa 328 (828)
..++++..+|.|+|||+.+++++..+.+|..+|.+|+
T Consensus 240 -------------------------------------------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 240 -------------------------------------------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp -------------------------------------------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred -------------------------------------------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 0123456788999999999999999999999999999
Q ss_pred EcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEE
Q 003336 329 FDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHL 406 (828)
Q Consensus 329 FSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhI 406 (828)
|+|+| ++|||||.||+ |+|||+.++ +.+..+ +|. ..|++|+||| |+++||+++.||+|+|
T Consensus 277 ~sp~~~~~lasgs~D~~-i~iwd~~~~--------------~~~~~~--~H~-~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 277 YSYHSSPFLASISEDCT-VAVLDADFS--------------EVFRDL--SHR-DFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp ECSSSSCCEEEEETTSC-EEEECTTSC--------------EEEEEC--CCS-SCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EcCCCCCEEEEEeCCCE-EEEEECCCC--------------cEeEEC--CCC-CCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 99987 68999999998 899999875 333332 554 4599999998 8999999999999999
Q ss_pred EecCCCCCce
Q 003336 407 FAINPLGGSV 416 (828)
Q Consensus 407 wdl~~~gg~~ 416 (828)
|++...+...
T Consensus 339 W~~~~~~~~~ 348 (357)
T 4g56_B 339 HHLPSEGRTE 348 (357)
T ss_dssp EECC------
T ss_pred EECCCCCccc
Confidence 9998765443
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=5.6e-23 Score=227.50 Aligned_cols=243 Identities=12% Similarity=0.201 Sum_probs=176.3
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+++.+.++.++|||+.. .++...+..|.+.|.++++.|+. .+|+.++.
T Consensus 163 ~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~--------------~~l~s~s~--------------- 212 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNG--------------DHIVSASR--------------- 212 (410)
T ss_dssp SEEEEEETTSCCCEEETTS-SCEEECCCCCSSCEEEEEECSSS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEEeCCC--------------CEEEEEeC---------------
Confidence 3455555666799999986 45666777899999999998853 24443332
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
+++|++||++++++++++.. ...|..+.++ +++|++ +.+++|++||+.+.++..++..
T Consensus 213 ------------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~ 274 (410)
T 1vyh_C 213 ------------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274 (410)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC
Confidence 27899999999999999875 5689999996 566766 5688999999999999888876
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|... + ..++|........ +. ...+...
T Consensus 275 h~~~---------------v----~~~~~~~~~~~~~---------~~--------~~~~~~~----------------- 301 (410)
T 1vyh_C 275 HRHV---------------V----ECISWAPESSYSS---------IS--------EATGSET----------------- 301 (410)
T ss_dssp CSSC---------------E----EEEEECCSCGGGG---------GG--------GCCSCC------------------
T ss_pred CCce---------------E----EEEEEcCcccccc---------hh--------hhccccc-----------------
Confidence 6321 1 1234432100000 00 0000000
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
..... . ...+++++.||.|+|||+.+++++..+.+|...|.+|+|+|+|
T Consensus 302 -----------------------~~~~~-----~---g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 302 -----------------------KKSGK-----P---GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp -------------------------------------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred -----------------------cccCC-----C---CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 00000 0 1134567889999999999999999999999999999999999
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
++|+||+.||+ |+|||+.++ ..+..+ .++. ..|.+++|+|++.+||++|.||+|+||++
T Consensus 351 ~~l~s~s~D~~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 351 KFILSCADDKT-LRVWDYKNK--------------RCMKTL-NAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTTE-EEEECCTTS--------------CCCEEE-ECCS-SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCe-EEEEECCCC--------------ceEEEE-cCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999997 899999765 233444 3443 35999999999999999999999999986
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.91 E-value=7.9e-23 Score=222.61 Aligned_cols=241 Identities=11% Similarity=0.098 Sum_probs=172.0
Q ss_pred CCCcEEEEEccCCeEEEEecC----------CCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCC
Q 003336 16 ATRRVLLLGYRSGFQVWDVEE----------ADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSR 85 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~----------~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~ 85 (828)
+.+++|+.|.+..+++||... ........-.++.+|.++++.|+. .|+.++.
T Consensus 40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---------------~l~~~s~--- 101 (344)
T 4gqb_B 40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---------------GILVASD--- 101 (344)
T ss_dssp TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---------------EEEEEET---
T ss_pred CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---------------eEEEEEC---
Confidence 346788888888888887421 011111222467889999998742 3433332
Q ss_pred ccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CCEEEE-EeCCEE
Q 003336 86 SCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQV 157 (828)
Q Consensus 86 ~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-----f~s~V~sV~~S--~riLAV-s~~~~I 157 (828)
+++|+|||+.+++.+..++ +...|.+|+|+ +++|++ +.+++|
T Consensus 102 ------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i 151 (344)
T 4gqb_B 102 ------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151 (344)
T ss_dssp ------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 1789999999998776654 46799999997 567776 567899
Q ss_pred EEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCccee
Q 003336 158 HCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVA 237 (828)
Q Consensus 158 ~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va 237 (828)
++||+.++++++++..|... + ..++|.. ++.
T Consensus 152 ~iwd~~~~~~~~~~~~h~~~---------------V----~~~~~~~---------------------------~~~--- 182 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRAHAAQ---------------V----TCVAASP---------------------------HKD--- 182 (344)
T ss_dssp EEEETTTTEEEEEECCCSSC---------------E----EEEEECS---------------------------SCT---
T ss_pred EEEECCCCcEEEEEcCcCCc---------------e----EEEEecC---------------------------CCC---
Confidence 99999999999998776421 1 1123321 000
Q ss_pred eeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe
Q 003336 238 HYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF 317 (828)
Q Consensus 238 ~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f 317 (828)
..+++++.||.|+|||+.+++++..+
T Consensus 183 ------------------------------------------------------~~l~s~s~D~~v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 183 ------------------------------------------------------SVFLSCSEDNRILLWDTRCPKPASQI 208 (344)
T ss_dssp ------------------------------------------------------TEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred ------------------------------------------------------Cceeeeccccccccccccccceeeee
Confidence 01234567899999999999998887
Q ss_pred c--cCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC-C
Q 003336 318 R--AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-N 393 (828)
Q Consensus 318 ~--aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg-~ 393 (828)
. .|...+.+++|+| ++++||+|+.||+ |+|||+.++ ..+.++ +++. ..|.+|+|+||+ +
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~--------------~~~~~~-~~h~-~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKST--------------SCVLSS-AVHS-QCVTGLVFSPHSVP 271 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC----------------CCEEE-ECCS-SCEEEEEECSSSSC
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEccCCCe
Confidence 5 5566899999999 5679999999997 899999875 334455 3554 359999999998 6
Q ss_pred EEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 394 WIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 394 ~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
+||++|.|++|+|||+... ....+.+|.+.+
T Consensus 272 ~lasgs~D~~i~vwd~~~~-~~~~~~~H~~~V 302 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLS-ELFRSQAHRDFV 302 (344)
T ss_dssp CEEEEETTSCEEEECTTCC-EEEEECCCSSCE
T ss_pred EEEEEeCCCeEEEEECCCC-cEEEEcCCCCCE
Confidence 8999999999999999764 456677886543
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=3.7e-22 Score=212.93 Aligned_cols=247 Identities=11% Similarity=0.156 Sum_probs=165.8
Q ss_pred CcEEEEEccCCeEEEEecCCCc----eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 18 RRVLLLGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~----~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
..++..+.++.++|||+..... ....+..|.++|.++++.|++ .+|+.++.
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------------~~l~s~s~----------- 85 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------------AYALSASW----------- 85 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET-----------
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--------------CEEEEEeC-----------
Confidence 3456666677799999975321 233456789999999998753 24544432
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~ 169 (828)
+++|++||+++++++.++. +...|.+|+|+ +++|++ +.+++|++||+. .+++.
T Consensus 86 ----------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~ 142 (319)
T 3frx_A 86 ----------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLA 142 (319)
T ss_dssp ----------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEE
T ss_pred ----------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEE
Confidence 2789999999999999887 46799999997 456655 678899999996 45666
Q ss_pred EEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
++..|... + .-+++.... . . ..+
T Consensus 143 ~~~~h~~~---------------v----~~~~~~~~~-------------~-----~---~~~----------------- 165 (319)
T 3frx_A 143 TLLGHNDW---------------V----SQVRVVPNE-------------K-----A---DDD----------------- 165 (319)
T ss_dssp EECCCSSC---------------E----EEEEECCC--------------------------------------------
T ss_pred EEeccCCc---------------E----EEEEEccCC-------------C-----C---CCC-----------------
Confidence 66555321 0 011222100 0 0 000
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
+ ..+++++.||.|++||+.+.+....+.+|..+|.+|+|
T Consensus 166 --------------------------------------~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 166 --------------------------------------S---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204 (319)
T ss_dssp --------------------------------------C---CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE
T ss_pred --------------------------------------c---cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE
Confidence 0 02345667899999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCC-----CCCC----ccCCC--------CceeEEEEE---------ecCC-----
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGIL-----GTSS----ACDAG--------TSYVHLYRL---------QRGL----- 378 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~-----~~~~----~~~~~--------~~~~~l~~L---------~RG~----- 378 (828)
+|+|++||||+.||+ |+|||+..+.. .... +..+. ....+++.+ +...
T Consensus 205 sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 205 SPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp CTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred cCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccccc
Confidence 999999999999998 89999987510 0000 00000 011122221 1110
Q ss_pred -ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 379 -TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 379 -t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
....|.+++|||||++|++++.||+|+||++.+
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 012377888888888888888888888888864
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=7.4e-22 Score=214.24 Aligned_cols=243 Identities=12% Similarity=0.118 Sum_probs=178.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.++..+.++.++|||+.+ ++....+..|...|.++++.|+. .+||.++.
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g--------------~~lasg~~--------------- 126 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSG--------------CAIACGGL--------------- 126 (354)
T ss_dssp SEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTS--------------SEEEEEST---------------
T ss_pred CEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCC--------------CEEEEeeC---------------
Confidence 4566666677799999987 45666677788899999998853 24443321
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCC------cEEEEEe-CCCCEEEEEEc--CC-EEEEEeCCEEEEEECCCCce
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQ------SYVHMLK-FRSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEI 167 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg------~~V~tL~-f~s~V~sV~~S--~r-iLAVs~~~~I~IwDl~t~~~ 167 (828)
+++|++|++... .....+. +...|.++.|+ .+ +++.+.+++|++||+.++++
T Consensus 127 ------------------d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 127 ------------------DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp ------------------TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred ------------------CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 278999998654 2234443 56789999996 33 44557789999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
+.++..|... .. .++++.++ +|.
T Consensus 189 ~~~~~~h~~~--------------v~-----~~~~~~~~-------------------------~g~------------- 211 (354)
T 2pbi_B 189 LQSFHGHGAD--------------VL-----CLDLAPSE-------------------------TGN------------- 211 (354)
T ss_dssp EEEEECCSSC--------------EE-----EEEECCCS-------------------------SCC-------------
T ss_pred EEEEcCCCCC--------------eE-----EEEEEeCC-------------------------CCC-------------
Confidence 9888776321 01 12222100 000
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL 327 (828)
.+++++.||.|++||+.+++++..+.+|..+|.++
T Consensus 212 ---------------------------------------------~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 212 ---------------------------------------------TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246 (354)
T ss_dssp ---------------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE
Confidence 13445678999999999999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
+|+|+|.+||||+.||+ |+|||+... ..+..+........+.+++|+||+++|++++.|++|+||
T Consensus 247 ~~~p~~~~l~s~s~D~~-v~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 247 RYYPSGDAFASGSDDAT-CRLYDLRAD--------------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeCCCCEEEEEeCCCe-EEEEECCCC--------------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 99999999999999998 899999875 233333222222348999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCCC
Q 003336 408 AINPLGGSVNFQPTDANF 425 (828)
Q Consensus 408 dl~~~gg~~~~~~H~~~~ 425 (828)
|+........+.+|...+
T Consensus 312 d~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRV 329 (354)
T ss_dssp ETTTCSEEEEECCCSSCE
T ss_pred ECCCCceEEEEECCCCcE
Confidence 998776666777886543
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.91 E-value=4.7e-22 Score=213.69 Aligned_cols=222 Identities=13% Similarity=0.171 Sum_probs=166.8
Q ss_pred CcEEEEEccCCeEEEEecCCC---ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~---~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+.++..|.++.++|||+.... .....+..|.+.|.++.+.|.. .|+.++.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~l~s~s~------------ 162 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---------------QIVTSSG------------ 162 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT---------------EEEEEET------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC---------------cEEEEEC------------
Confidence 345556667779999997642 2344456789999999987631 2333332
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
+++|++||+++++.+.++. +...|.+++|+ +++|++ +.+++|++||+.+++++.+
T Consensus 163 ---------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ---------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 1679999999999999987 46789999997 556665 5688999999999998888
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+..|... + .-|++.. ++.
T Consensus 222 ~~~h~~~---------------v----~~v~~~p---------------------------~~~---------------- 239 (340)
T 1got_B 222 FTGHESD---------------I----NAICFFP---------------------------NGN---------------- 239 (340)
T ss_dssp ECCCSSC---------------E----EEEEECT---------------------------TSS----------------
T ss_pred EcCCcCC---------------E----EEEEEcC---------------------------CCC----------------
Confidence 8665321 1 1123321 011
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALC 328 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a--H~~pIsaLa 328 (828)
.+++++.||.|+|||+.+++.+..+.. +...|.+++
T Consensus 240 ------------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 240 ------------------------------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ------------------------------------------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 123456789999999999988887763 345899999
Q ss_pred EcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 329 FSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
|+|+|++|++|+.||+ |+|||+..+ ..+..+ .|+. ..|.+++|+||+++||+++.||+|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFN-CNVWDALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCe-EEEEEcccC--------------cEeeEe-ecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999997 899999875 344455 4554 4599999999999999999999999996
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=3.1e-22 Score=211.77 Aligned_cols=219 Identities=11% Similarity=0.192 Sum_probs=169.1
Q ss_pred eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEE
Q 003336 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (828)
Q Consensus 40 ~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (828)
....+..|.+.|.+++|.|+. ++|+.++. +++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~--------------~~l~s~~~---------------------------------dg~v 37 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLY---------------------------------SGRV 37 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS--------------SEEEEEET---------------------------------TSEE
T ss_pred eEEeecCCCCceEEEEECCCC--------------CEEEEEcC---------------------------------CCcE
Confidence 566788899999999999853 35654442 1789
Q ss_pred EEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeee
Q 003336 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (828)
Q Consensus 120 rlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAl 195 (828)
++||+.+++.++++.. ..+|.+++|+ +++|++ +.+++|++||+.+++++.++..|... +
T Consensus 38 ~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~---------------v-- 100 (304)
T 2ynn_A 38 ELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I-- 100 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc---------------E--
Confidence 9999999999999986 5689999996 566666 66789999999999999998877421 1
Q ss_pred ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCC
Q 003336 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (828)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (828)
+.|++.. ++.
T Consensus 101 --~~~~~~~---------------------------~~~----------------------------------------- 110 (304)
T 2ynn_A 101 --RSIAVHP---------------------------TKP----------------------------------------- 110 (304)
T ss_dssp --EEEEECS---------------------------SSS-----------------------------------------
T ss_pred --EEEEEcC---------------------------CCC-----------------------------------------
Confidence 1123321 000
Q ss_pred CcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCC
Q 003336 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 276 si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~ 353 (828)
.+++++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+||||+.||+ |+|||+..
T Consensus 111 -----------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~~ 172 (304)
T 2ynn_A 111 -----------------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLGQ 172 (304)
T ss_dssp -----------------EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETTC
T ss_pred -----------------EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECCC
Confidence 1234567899999999987 55678999999999999999 7899999999997 89999976
Q ss_pred CCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
. ...+.+..++. ..|..++|+| |+++|++++.|++|+|||+........+.+|...+
T Consensus 173 ~--------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 173 S--------------TPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (304)
T ss_dssp S--------------SCSEEEECCCT-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred C--------------CccceeccCCc-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence 4 12234434432 3488899986 88999999999999999999877777888886543
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=6.1e-22 Score=217.36 Aligned_cols=252 Identities=14% Similarity=0.177 Sum_probs=174.8
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeec------------------CCEEEEEEecCCCCcccccCccccCCCEE
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYD------------------GPVSFMQMLPRPITSKRSRDKFAEVRPLL 77 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hd------------------G~V~~v~~lP~p~~~~~~~d~F~~~rPLL 77 (828)
+..+.|+.|.++.++|||+.+ +.....+..+. ..|+++++.|+. .+|
T Consensus 74 pdg~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--------------~~l 138 (393)
T 1erj_A 74 NDGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--------------KFL 138 (393)
T ss_dssp TTSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTS--------------SEE
T ss_pred CCCCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--------------CEE
Confidence 346788899999999999987 44444443332 237777776642 244
Q ss_pred EEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-Ee
Q 003336 78 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQ 153 (828)
Q Consensus 78 avv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~ 153 (828)
+.++. +++|++||+.+++.+..+. +...|.+++|+ ++.|++ +.
T Consensus 139 ~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 139 ATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp EEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC
Confidence 44332 2779999999999999987 46789999996 556655 67
Q ss_pred CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCC
Q 003336 154 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 233 (828)
Q Consensus 154 ~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g 233 (828)
+++|++||+.++++..++.... . .. .+++.. .++
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~~-------------~--v~-----~~~~~~--------------------------~~~ 219 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIED-------------G--VT-----TVAVSP--------------------------GDG 219 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-------------C--EE-----EEEECS--------------------------TTC
T ss_pred CCcEEEEECCCCeeEEEEEcCC-------------C--cE-----EEEEEC--------------------------CCC
Confidence 8899999999998877664321 0 00 122220 001
Q ss_pred cceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE
Q 003336 234 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV 313 (828)
Q Consensus 234 ~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~ 313 (828)
. .+++++.+|.|+|||+.+++.
T Consensus 220 ~----------------------------------------------------------~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 220 K----------------------------------------------------------YIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp C----------------------------------------------------------EEEEEETTSCEEEEETTTCCE
T ss_pred C----------------------------------------------------------EEEEEcCCCcEEEEECCCCcE
Confidence 1 123455789999999999988
Q ss_pred EEEe-------ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEE
Q 003336 314 IAQF-------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (828)
Q Consensus 314 i~~f-------~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sI 386 (828)
+..+ .+|..+|.+|+|+|+|++||+|+.||+ |+|||+........... .........+ .|+. ..|.++
T Consensus 242 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~~~~--~~~~~~~~~~-~~h~-~~v~~~ 316 (393)
T 1erj_A 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKT--PNSGTCEVTY-IGHK-DFVLSV 316 (393)
T ss_dssp EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-----------------CEEEEE-ECCS-SCEEEE
T ss_pred EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCcccccC--CCCCcceEEE-eccc-CcEEEE
Confidence 8877 689999999999999999999999997 89999976411000000 0001233344 3554 359999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 387 SFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 387 aFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
+|+|++++|++++.||+|+|||+........+++|...
T Consensus 317 ~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 317 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 99999999999999999999999887666778888654
No 17
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=1.6e-21 Score=215.20 Aligned_cols=273 Identities=15% Similarity=0.220 Sum_probs=183.9
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeee--eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS--~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..+|++|.++.++|||+.+ +++.+++. .|.+.|.+|++.|+. .+||+++. |
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg--------------~~lasgs~----------D-- 168 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS----------S-- 168 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET----------T--
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCC--------------CEEEEEEC----------C--
Confidence 5699999999999999987 67777776 456789999998853 25655442 1
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCc-eEEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~-~l~tL~ 172 (828)
++|+|||+.++++++++.. ...|.++.+++++|++ +.++.|++||..+.. .+.++.
T Consensus 169 ---------------------g~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 169 ---------------------AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp ---------------------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ---------------------CeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 6799999999999999875 5689999999888887 567899999998754 456666
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
.|.... ..+...+ ++|+..... ..+..+.....+....-
T Consensus 228 ~h~~~~------------~~~~~~~~g~~l~s~~~D---------------------------~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 228 GHSQEV------------CGLRWAPDGRHLASGGND---------------------------NLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp CCSSCE------------EEEEECTTSSEEEEEETT---------------------------SCEEEEESSCCSSCSCC
T ss_pred ccccce------------eeeeecCCCCeeeeeecc---------------------------ccceEEeecccccccee
Confidence 664311 1122222 444444221 11111111000000000
Q ss_pred eEeccCccceeeccccccccCCCCCCccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~s-a-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLa 328 (828)
+.... ...+.+.. + ++... ..+ ...++..||.|+|||+.+++++..+..| ..|.++.
T Consensus 269 ~~~~~----------------~~~~~V~~~~~~p~~~--~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 269 LQTFT----------------QHQGAVKAVAWCPWQS--NVL--ATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp SEEEC----------------CCSSCEEEEEECTTCT--TEE--EEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred eeeec----------------ccCCceeeeeeCCCcc--cEE--EEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 00000 00000000 0 11100 000 0123567999999999999999998876 4688999
Q ss_pred EcCCCCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003336 329 FDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (828)
Q Consensus 329 FSPdG~lLATaS--~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI 406 (828)
|+|++..|++++ .||+ |+|||+.++ ..+.+| +||. ..|.+|+|||||++||+++.|+||+|
T Consensus 328 ~~~~~~~lv~~sg~~d~~-I~iwd~~~~--------------~~v~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ecCCCCeEEEEEecCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 999999998876 6887 899999876 456677 4765 46999999999999999999999999
Q ss_pred EecCCCCCc
Q 003336 407 FAINPLGGS 415 (828)
Q Consensus 407 wdl~~~gg~ 415 (828)
||+......
T Consensus 391 Wdv~~~~~~ 399 (420)
T 4gga_A 391 WRCFELDPA 399 (420)
T ss_dssp ECCSCSSCC
T ss_pred EECCCCCcc
Confidence 999765433
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=5.9e-22 Score=230.67 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=88.3
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 293 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 293 ~~~s~~~dG~V~IwDl~s~~~--i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
.+++++.||.|+|||+.++.. +.. .+|...|.+|+|||||++||+++.|++ |++||+... ...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~-------------~~~ 526 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN-------------FEL 526 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT-------------TEE
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC-------------Cce
Confidence 456788999999999987653 344 689999999999999999999999998 899999762 011
Q ss_pred EEE-EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc--eeeccC
Q 003336 371 LYR-LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS--VNFQPT 421 (828)
Q Consensus 371 l~~-L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~--~~~~~H 421 (828)
+.. +..+|. ..|.+++|||||++||++|.|++|+||++...... ..+.+|
T Consensus 527 ~~~~~~~~H~-~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 527 AHTNSWTFHT-AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCCCCCCCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred eeeeeeeecc-cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 111 122243 46999999999999999999999999999875432 244455
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=1.4e-21 Score=206.18 Aligned_cols=246 Identities=13% Similarity=0.190 Sum_probs=166.3
Q ss_pred CcEEEEEccCCeEEEEecCC-CceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~-~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.++..+.++.++|||++.. ......+..|.++|.++++.|.. ...+||.++.
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------------~g~~l~s~s~-------------- 75 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY-------------- 75 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------------GCSEEEEEET--------------
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------------cCCEEEEEcC--------------
Confidence 45666667777999999752 24556677899999999997521 0125554542
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCce-
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEI- 167 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~~- 167 (828)
+++|+|||+++++ .+.++. +...|.+|+|+ +++|++ +.+++|++||+.+...
T Consensus 76 -------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 76 -------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 2789999999884 455555 46789999996 356665 6788999999987632
Q ss_pred -EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 168 -l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
...+..|.. .+ .-++|.... ... .+.
T Consensus 137 ~~~~~~~h~~------------~v-------~~~~~~p~~-------------~~~---------~~~------------ 163 (297)
T 2pm7_B 137 SPIIIDAHAI------------GV-------NSASWAPAT-------------IEE---------DGE------------ 163 (297)
T ss_dssp CCEEEECCSS------------CE-------EEEEECCCC----------------------------------------
T ss_pred eeeeeecccC------------cc-------ceEeecCCc-------------ccc---------ccc------------
Confidence 344444421 01 112333100 000 000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCC
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKS 322 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~----~i~~f~aH~~ 322 (828)
+. ... . ...+++++.||.|+|||+.+++ .+..|.+|..
T Consensus 164 --------~~-----------------------~~~----~---~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 164 --------HN-----------------------GTK----E---SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp --------------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred --------CC-----------------------CCC----C---cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 00 000 0 0134567789999999998765 6778999999
Q ss_pred CeEEEEEcCCC---CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cCCccccEEEEEEccCCCEEEEE
Q 003336 323 PISALCFDPSG---ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 323 pIsaLaFSPdG---~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
+|.+|+|+|++ .+|||+|.||+ |+|||+... .+ . .....+. .++ ...|++++|+||+++||++
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~-~~---------~-~~~~~~~~~~~-~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNE-QG---------P-WKKTLLKEEKF-PDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-TS---------C-CEEEESSSSCC-SSCEEEEEECSSSCCEEEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCC-CC---------c-cceeeeecccC-CCcEEEEEECCCCCEEEEE
Confidence 99999999995 89999999998 899998764 00 0 1111221 233 3459999999999999999
Q ss_pred eCCCcEEEEecCCC
Q 003336 399 SSRGTSHLFAINPL 412 (828)
Q Consensus 399 S~DGTVhIwdl~~~ 412 (828)
+.||+|+||+....
T Consensus 273 ~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 273 GGDNKVTLWKENLE 286 (297)
T ss_dssp ETTSCEEEEEECTT
T ss_pred cCCCcEEEEEECCC
Confidence 99999999998754
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.90 E-value=1.7e-21 Score=212.84 Aligned_cols=260 Identities=10% Similarity=0.098 Sum_probs=172.8
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCc-----------
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRS----------- 86 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~----------- 86 (828)
+.++..+.++.++|||+.. +.....+..|...|.++++.|+.. +||.++.+...
T Consensus 79 ~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~--------------~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQ--------------SVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp SCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSS--------------EEEECCSSSCCEEEECCCCSSC
T ss_pred CEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCC--------------EEEEeeCCCcEEEEECCCCccc
Confidence 4556666666799999987 456667778999999999988642 33322211100
Q ss_pred -c----CccccCCcccccCCC-CCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe------CCCCEEEEEEc---CCEEEE
Q 003336 87 -C----GTKVQDGLATACNGT-SANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS---SRVVAI 151 (828)
Q Consensus 87 -g----~~~~~Dg~~~~~~g~-~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~------f~s~V~sV~~S---~riLAV 151 (828)
+ ......+.+...... .+...........+++|++||+++++.+..+. +...|.++.++ +++|+.
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 0 000000000000000 01000001122357899999999999999883 34589999995 466665
Q ss_pred -EeCCEEEEEECCC-CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccc
Q 003336 152 -CQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF 229 (828)
Q Consensus 152 -s~~~~I~IwDl~t-~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~ 229 (828)
+.+++|++||+.. .+.+.++..|... +. -|+|..
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~------------v~-------~v~~~p------------------------- 259 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGD------------IN-------SVKFFP------------------------- 259 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSC------------CC-------EEEECT-------------------------
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCC------------eE-------EEEEec-------------------------
Confidence 6688999999984 4566666555321 11 122221
Q ss_pred cCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECC
Q 003336 230 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV 309 (828)
Q Consensus 230 ~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~ 309 (828)
++. .+++++.||+|+|||+.
T Consensus 260 --~~~----------------------------------------------------------~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 260 --DGQ----------------------------------------------------------RFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp --TSS----------------------------------------------------------EEEEECSSSCEEEEETT
T ss_pred --CCC----------------------------------------------------------eEEEEcCCCeEEEEECC
Confidence 000 23456788999999999
Q ss_pred CCcEEEEeccCCC-------CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE---ecCCc
Q 003336 310 SKNVIAQFRAHKS-------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL---QRGLT 379 (828)
Q Consensus 310 s~~~i~~f~aH~~-------pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L---~RG~t 379 (828)
+++.+..+..|.. .|.+++|+|+|++|++|+.||+ |+|||+..+ ..+..+ ..++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLA--------------EMVLNLGTLQNSHE 344 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTC--------------CEEEEECCSCSSCC
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCC--------------ceEEEEecccCCCC
Confidence 9999988876542 4899999999999999999998 899999765 233344 23443
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..|.+++|||||++||++|.||+|+||++...
T Consensus 345 -~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 345 -GRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred -CceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 45999999999999999999999999999753
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=1.2e-21 Score=228.23 Aligned_cols=236 Identities=11% Similarity=0.137 Sum_probs=174.9
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+..+.|+.|..+.++|||+.. +.....+..|.+.|.++++.|++ .+||.++.
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg--------------~~lasg~~------------- 79 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSG--------------YYCASGDV------------- 79 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCC--------------cEEEEEeC-------------
Confidence 446788888888999999986 45667788899999999999863 25654442
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CCEEEEEeC-----CEEEEEECCCC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAICQA-----AQVHCFDAATL 165 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S--~riLAVs~~-----~~I~IwDl~t~ 165 (828)
+++|+|||+.+++ ...++. +..+|.+|+|+ ++.|+++.+ ++|++||. +
T Consensus 80 --------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~ 137 (611)
T 1nr0_A 80 --------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G 137 (611)
T ss_dssp --------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C
T ss_pred --------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C
Confidence 2789999997654 445555 46799999997 567776543 26888884 4
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.+.++..|.. ++ ..++|.. ++.
T Consensus 138 ~~~~~l~gh~~---------------~v----~~v~f~p---------------------------~~~----------- 160 (611)
T 1nr0_A 138 TSNGNLTGQAR---------------AM----NSVDFKP---------------------------SRP----------- 160 (611)
T ss_dssp CBCBCCCCCSS---------------CE----EEEEECS---------------------------SSS-----------
T ss_pred CCcceecCCCC---------------Cc----eEEEECC---------------------------CCC-----------
Confidence 44444433321 01 1123321 000
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIs 325 (828)
-.+++++.|+.|+|||..+++++.+|.+|...|.
T Consensus 161 ----------------------------------------------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~ 194 (611)
T 1nr0_A 161 ----------------------------------------------FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194 (611)
T ss_dssp ----------------------------------------------CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred ----------------------------------------------eEEEEEeCCCeEEEEECCCCeEeeeeccccCceE
Confidence 0134456789999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec------CCccccEEEEEEccCCCEEEEEe
Q 003336 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 326 aLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R------G~t~a~I~sIaFSpDg~~LAs~S 399 (828)
+|+|+|||++||||+.||+ |+|||+.++ ..+..+.. +|. ..|.+++|+||+++||+++
T Consensus 195 ~v~fspdg~~las~s~D~~-i~lwd~~~g--------------~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp EEEECTTSSEEEEEETTSC-EEEEETTTC--------------CEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEECCCc-EEEEECCCC--------------cEeeeeccccccccccC-CCEEEEEECCCCCEEEEEe
Confidence 9999999999999999998 899999876 34445533 454 4599999999999999999
Q ss_pred CCCcEEEEecCCCCCceeecc
Q 003336 400 SRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 400 ~DGTVhIwdl~~~gg~~~~~~ 420 (828)
.|++|+|||+.+......+..
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEeCCCCceeeeecC
Confidence 999999999987655555544
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=2.6e-21 Score=212.31 Aligned_cols=232 Identities=12% Similarity=0.168 Sum_probs=168.5
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.++..+.++.++|||++. +.....+..|.+.|.++++.|+. .+|+.++.
T Consensus 137 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~--------------~~l~s~s~---------------- 185 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG--------------DKLVSGSG---------------- 185 (393)
T ss_dssp EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCC--------------CEEEEecC----------------
Confidence 444455566699999987 56667778899999999998753 24544432
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
+++|++||+++++++.++.+...|..++++ +++|++ +.++.|++||+.+++.+..+...
T Consensus 186 -----------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~ 248 (393)
T 1erj_A 186 -----------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248 (393)
T ss_dssp -----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred -----------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence 178999999999999999999999999996 467766 56889999999999877766321
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
... ..+ ...++ .-|+|.. +|
T Consensus 249 ~~~--~~~------h~~~v----~~v~~~~---------------------------~g--------------------- 268 (393)
T 1erj_A 249 NES--GTG------HKDSV----YSVVFTR---------------------------DG--------------------- 268 (393)
T ss_dssp ------CC------CSSCE----EEEEECT---------------------------TS---------------------
T ss_pred ccC--CCC------CCCCE----EEEEECC---------------------------CC---------------------
Confidence 100 000 00000 0112210 00
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC------------CcEEEEeccCCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------------KNVIAQFRAHKS 322 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s------------~~~i~~f~aH~~ 322 (828)
..+++++.||.|+|||+.+ +.+...+.+|..
T Consensus 269 -------------------------------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 269 -------------------------------------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311 (393)
T ss_dssp -------------------------------------SEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred -------------------------------------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC
Confidence 0234456789999999975 345678889999
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc------CCCEEE
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD------DSNWIM 396 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp------Dg~~LA 396 (828)
.|.+++|+|+|++|++|+.||+ |+|||+.++ ..+..+ +|+. ..|.+++|++ |+++||
T Consensus 312 ~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~--------------~~~~~l-~~h~-~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 312 FVLSVATTQNDEYILSGSKDRG-VLFWDKKSG--------------NPLLML-QGHR-NSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp CEEEEEECGGGCEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECSSCTTCTTCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCe-EEEEECCCC--------------eEEEEE-CCCC-CCEEEEEecCCcCcCCCCCEEE
Confidence 9999999999999999999997 899999876 344555 4554 3599999986 789999
Q ss_pred EEeCCCcEEEEecCCC
Q 003336 397 ISSSRGTSHLFAINPL 412 (828)
Q Consensus 397 s~S~DGTVhIwdl~~~ 412 (828)
+++.||+|+||++...
T Consensus 375 sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 375 TGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEEEEEC
T ss_pred EECCCCcEEECccccc
Confidence 9999999999998653
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=2.3e-21 Score=204.62 Aligned_cols=294 Identities=9% Similarity=0.046 Sum_probs=182.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeee-----ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR-----YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~-----hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
..+++.+.++.++|||+.... ....+.. |++.|.++++.|+... ...+|+.++.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~~~l~~~~~---------- 93 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQG-EIRLLQSYVDADADENFYTCAWTYDSNT----------SHPLLAVAGS---------- 93 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGG-CEEEEEEEECSCTTCCEEEEEEEECTTT----------CCEEEEEEET----------
T ss_pred ceEEEECCCCEEEEEEcCCCc-EEEeeeeccccCCCCcEEEEEeccCCCC----------CCCEEEEecC----------
Confidence 457777777789999998743 4344443 4578999999985311 1135655542
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCce
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S---~riLAV-s~~~~I~IwDl~t~~~ 167 (828)
+++|++||+.+++.+..+. +...|.+|+|+ +++|++ +.++.|++||+.+++.
T Consensus 94 -----------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 94 -----------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp -----------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred -----------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 1789999999999999998 67899999996 466766 5578999999999998
Q ss_pred EEEEE---cCCCccCCCCCCCCCcccceeeecc--ceEEEeCCC--ceecCC--CccCCcccccccccccccCCCcceee
Q 003336 168 EYAIL---TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSND--GRVNPQHLMQSRSFSGFASNGSRVAH 238 (828)
Q Consensus 168 l~tL~---t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~--~~~s~~--Grvsp~~l~~s~~~s~~~s~g~~Va~ 238 (828)
+..+. .+.. .+..+++++ ++|+.++.. +..+.. +.. ...+.....+++ ++..+
T Consensus 151 ~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~---~~~~~-- 212 (366)
T 3k26_A 151 VAIFGGVEGHRD------------EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYNP---NKTNR-- 212 (366)
T ss_dssp EEEECSTTSCSS------------CEEEEEECTTSSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCCG---GGCSS--
T ss_pred EEEecccccccC------------ceeEEEECCCCCEEEEecCCCCEEEEECCCCcc-ccccceeEEecC---CCCcc--
Confidence 88873 3321 122345544 556655321 111110 000 000000000000 00000
Q ss_pred eecccccceeceeEeccCccceeeccccccccCCCCCCccc-ccCCCCCCCccCCcccccCCCCeEEEEECCCCc-----
Q 003336 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----- 312 (828)
Q Consensus 239 ~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~s-a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~----- 312 (828)
+..........+... ......+.. +.. ...++++..+|.|++||+.++.
T Consensus 213 ---------~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 213 ---------PFISQKIHFPDFSTR--------DIHRNYVDCVRWL--------GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp ---------CCCCEEECCCSEEEC--------SSCSSCCCEEEEE--------TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred ---------cccceeeccCccccc--------cCCcceEEEEEEc--------CCEEEEEecCCEEEEEeCCCccccccc
Confidence 000000000000000 000000100 000 1245677889999999998764
Q ss_pred ---------EEEEeccCCCCeEEEEEcCC--CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc-c
Q 003336 313 ---------VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-N 380 (828)
Q Consensus 313 ---------~i~~f~aH~~pIsaLaFSPd--G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t-~ 380 (828)
.+..+..|..+|.+|+|+|+ |++||+++.||. |+|||+..+.. ....+..+. ++. .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~~~----------~~~~~~~~~-~~~~~ 335 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVEDP----------HKAKCTTLT-HHKCG 335 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSSSG----------GGCEEEEEC-CTTCC
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCCCC----------ccccceEEc-ccccC
Confidence 48899999999999999999 999999999998 89999987511 112334453 332 3
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
..|.+++|+||+++|++++.||+|+|||+.
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 469999999999999999999999999985
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=8.6e-21 Score=199.42 Aligned_cols=239 Identities=15% Similarity=0.216 Sum_probs=176.9
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.++..+.++.++|||+.+ +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 36 ~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~--------------- 85 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS--------------NLLVSASD--------------- 85 (312)
T ss_dssp SEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCC--------------CEEEEECC---------------
Confidence 3455555566799999987 56777888899999999998753 25554442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
+++|++||+++++++..++. ...|.++.|+ +++|++ +.+++|++||+.+++++.++..
T Consensus 86 ------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 147 (312)
T 4ery_A 86 ------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147 (312)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence 17899999999999999975 6689999997 456665 6688999999999998887765
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
|.. ++ .-++|.. ++.
T Consensus 148 ~~~---------------~v----~~~~~~~---------------------------~~~------------------- 162 (312)
T 4ery_A 148 HSD---------------PV----SAVHFNR---------------------------DGS------------------- 162 (312)
T ss_dssp CSS---------------CE----EEEEECT---------------------------TSS-------------------
T ss_pred CCC---------------cE----EEEEEcC---------------------------CCC-------------------
Confidence 421 11 1122321 010
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS 332 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPd 332 (828)
.++++..+|.|+|||+.+++.+..+. .|..+|.+++|+|+
T Consensus 163 ---------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 163 ---------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred ---------------------------------------EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence 12334568899999999999888765 56778999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcccc--EEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~--I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|++|++++.||+ |+|||+..+ ..+..+ .++.... +....+.+++++|++++.||+|+|||+.
T Consensus 204 ~~~l~~~~~d~~-i~iwd~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 204 GKYILAATLDNT-LKLWDYSKG--------------KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp SSEEEEEETTTE-EEEEETTTT--------------EEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCEEEEEcCCCe-EEEEECCCC--------------cEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999997 899999875 344444 3333221 3333344789999999999999999998
Q ss_pred CCCCceeeccCCCC
Q 003336 411 PLGGSVNFQPTDAN 424 (828)
Q Consensus 411 ~~gg~~~~~~H~~~ 424 (828)
.......+++|...
T Consensus 268 ~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 268 TKEIVQKLQGHTDV 281 (312)
T ss_dssp TCCEEEEECCCSSC
T ss_pred CchhhhhhhccCCc
Confidence 87666678887653
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.89 E-value=5.8e-21 Score=207.22 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=167.0
Q ss_pred CcEEEEEccCCeEEEEecCCC-----ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD-----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~-----~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
..++..|.++.++||++.... .....+..|.+.|.++.+.|+. ..|+.++.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~s~---------- 174 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--------------MQILTASG---------- 174 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--------------SEEEEEET----------
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC--------------CEEEEEeC----------
Confidence 345555566679999986421 2344566799999999998742 24443432
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE 166 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~ 166 (828)
+++|++||++++++++++.. ...|.++.++ +++|++ +.+++|++||+.+++
T Consensus 175 -----------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 175 -----------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp -----------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred -----------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 27899999999999999974 6689999885 356665 678899999999999
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
++.++..|... +. -++|.. ++.
T Consensus 232 ~~~~~~~h~~~------------v~-------~v~~~p---------------------------~~~------------ 253 (354)
T 2pbi_B 232 CVQAFETHESD------------VN-------SVRYYP---------------------------SGD------------ 253 (354)
T ss_dssp EEEEECCCSSC------------EE-------EEEECT---------------------------TSS------------
T ss_pred EEEEecCCCCC------------eE-------EEEEeC---------------------------CCC------------
Confidence 98888665321 11 123321 000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--CCCe
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KSPI 324 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH--~~pI 324 (828)
.+++++.||.|+|||+.+++.+..+..+ ...+
T Consensus 254 ----------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 254 ----------------------------------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp ----------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred ----------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 1234567899999999999888887754 3579
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
.+++|+|+|++|++|+.||+ |+|||+..+ ..+..+ .++. ..|.+++|||||++||+++.||+|
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~l-~~h~-~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYT-INVWDVLKG--------------SRVSIL-FGHE-NRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEETTTC--------------SEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTSEE
T ss_pred eEEEEeCCCCEEEEEECCCc-EEEEECCCC--------------ceEEEE-ECCC-CcEEEEEECCCCCEEEEEcCCCCE
Confidence 99999999999999999998 899999875 344455 4554 459999999999999999999999
Q ss_pred EEEe
Q 003336 405 HLFA 408 (828)
Q Consensus 405 hIwd 408 (828)
+||+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 26
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=3e-20 Score=193.13 Aligned_cols=270 Identities=15% Similarity=0.210 Sum_probs=178.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeee--eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS--~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..+|++|.++.++|||+++ +++.+++. .|.+.|.++++.|+. .+|+.++.
T Consensus 36 ~~~lAvg~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~--------------~~l~sgs~------------- 87 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS------------- 87 (318)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCC--------------CEEEEEEC-------------
Confidence 3589999999999999987 66767665 467789999998853 25554432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCc-eEEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~-~l~tL~ 172 (828)
+++|++||++++++++++.. ...+.++.+.++++++ +.++.+.+|+..+.. .+.++.
T Consensus 88 --------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 88 --------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp --------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred --------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 27899999999999999876 5578888888888887 567789999998764 456666
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
.|.... ..+++.+ ++|+.+.. +..+.-|.....+....-
T Consensus 148 ~~~~~~------------~~~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 148 GHSQEV------------CGLRWAPDGRHLASGGN---------------------------DNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp CCSSCE------------EEEEECTTSSEEEEEET---------------------------TSCEEEEESSCBTTBSCC
T ss_pred CccCce------------EEEEEcCCCCEEEEEec---------------------------CcceeEEECCCCcccccc
Confidence 653211 1122221 34443321 111211211111100000
Q ss_pred eEeccCccceeeccccccccCCCCCCccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~s-a-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLa 328 (828)
+... ....+.+.. + .+.. ... -..+++..++.|+|||.........+ .|...|.+++
T Consensus 189 ~~~~----------------~~~~~~v~~~~~~~~~-~~~---~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 189 LQTF----------------TQHQGAVKAVAWCPWQ-SNV---LATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp SEEE----------------CCCCSCEEEEEECTTS-TTE---EEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred eeee----------------cccCCceEEEEecCCC-CcE---EEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 0000 000000000 0 0100 000 01234667899999999988776554 4667899999
Q ss_pred EcCCCCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003336 329 FDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (828)
Q Consensus 329 FSPdG~lLATaS--~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhI 406 (828)
|+|++..|++++ .||+ |+|||+.++ ..+.+| +||. ..|.+|+||||+++||++|.||+|+|
T Consensus 248 ~~~~~~~~~~~sg~~d~~-i~iwd~~~~--------------~~~~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ecccccceEEEEEcCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 999999988776 6887 899999876 456677 4665 45999999999999999999999999
Q ss_pred EecCCC
Q 003336 407 FAINPL 412 (828)
Q Consensus 407 wdl~~~ 412 (828)
||+...
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 999653
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.89 E-value=2.3e-20 Score=200.46 Aligned_cols=239 Identities=15% Similarity=0.255 Sum_probs=161.8
Q ss_pred CcEEEEEccCCeEEEEecCCC------ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~------~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~ 91 (828)
+.++..+.++.++|||+.... .....+..|.++|.++++.|+. .+|+.++.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--------------~~l~s~s~--------- 96 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--------------CFAISSSW--------- 96 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--------------TEEEEEET---------
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--------------CEEEEEcC---------
Confidence 345556667779999997521 2345567799999999998742 24543332
Q ss_pred cCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce
Q 003336 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~ 167 (828)
+++|+|||++++++++++. +...|.+|+|+ +++|++ +.+++|++||+.. ++
T Consensus 97 ------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 97 ------------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp ------------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE
T ss_pred ------------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc
Confidence 2789999999999999987 46799999997 556655 6788999999973 33
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
...+.... +. ...+ ..++|.... ....
T Consensus 152 ~~~~~~~~---~~---------~~~v----~~~~~~~~~---------------------------~~~~---------- 178 (343)
T 2xzm_R 152 KFSSAEKE---NH---------SDWV----SCVRYSPIM---------------------------KSAN---------- 178 (343)
T ss_dssp EEECCTTT---SC---------SSCE----EEEEECCCC---------------------------CSCS----------
T ss_pred eeeeeccc---CC---------Ccee----eeeeecccc---------------------------cccc----------
Confidence 33322110 00 0001 123343100 0000
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL 327 (828)
...| ....+++++.||.|+||| .+.+.+..+.+|..+|.+|
T Consensus 179 --------------------~~~~------------------~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 179 --------------------KVQP------------------FAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219 (343)
T ss_dssp --------------------CCCS------------------SCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE
T ss_pred --------------------ccCC------------------CCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE
Confidence 0000 001245567899999999 4567788999999999999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
+|+|+|++||||+.||+ |+|||+.... .....+..+ ..|.+++|+||+++|+++ .|++|+||
T Consensus 220 ~~s~~g~~l~sgs~dg~-v~iwd~~~~~-------------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKK-LLIWDILNLT-------------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp EECTTSSEEEEEETTCE-EEEEESSCCS-------------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred EECCCCCEEEEEcCCCe-EEEEECCCCc-------------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 99999999999999997 8999995430 111223222 349999999999998765 57889999
Q ss_pred ecCCCCC
Q 003336 408 AINPLGG 414 (828)
Q Consensus 408 dl~~~gg 414 (828)
++.+...
T Consensus 282 ~~~~~~~ 288 (343)
T 2xzm_R 282 NLMTQSK 288 (343)
T ss_dssp ESSSCCS
T ss_pred EeCCCCC
Confidence 9987544
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.89 E-value=1.5e-21 Score=213.28 Aligned_cols=266 Identities=14% Similarity=0.183 Sum_probs=171.3
Q ss_pred EEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCC
Q 003336 30 QVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDL 109 (828)
Q Consensus 30 qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~ 109 (828)
.+|+..+ ..+...+..|.++|.++++.|+. .+|+.++.
T Consensus 49 ~~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~--------------~~l~s~s~--------------------------- 86 (380)
T 3iz6_a 49 VSFNPTD-LVCCRTLQGHSGKVYSLDWTPEK--------------NWIVSASQ--------------------------- 86 (380)
T ss_dssp CCCCCCC-CEEEEEECCCSSCEEEEEECTTS--------------SCEEEEET---------------------------
T ss_pred cccccce-eEEeecccccccEEEEEEEcCCC--------------CEEEEEeC---------------------------
Confidence 4566554 34566788899999999998853 24544432
Q ss_pred CCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce-------EEEEEcCCCcc
Q 003336 110 GNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-------EYAILTNPIVM 178 (828)
Q Consensus 110 g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~-------l~tL~t~p~~~ 178 (828)
+++|+|||+.+++.+++++. ...|.+++|+ +++||+ +.++.|++||+.+... ...+..|...
T Consensus 87 ------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 87 ------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp ------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred ------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 27899999999999999986 4589999996 667776 6788999999976431 1222222110
Q ss_pred CCCCCCCCCcccceeeecc---ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 179 GHPSAGGIGIGYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 179 ~~p~~~~~~~~~~piAlg~---r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
...+++.| ..|+.+ +.+.++.-|.....+.+. .++
T Consensus 160 -----------v~~~~~~~~~~~~l~s~---------------------------s~D~~i~~wd~~~~~~~~----~~~ 197 (380)
T 3iz6_a 160 -----------ASSCQYVPDQETRLITG---------------------------SGDQTCVLWDVTTGQRIS----IFG 197 (380)
T ss_dssp -----------CCCCBCCSSSSSCEEEE---------------------------CTTSCEEEECTTTCCEEE----EEC
T ss_pred -----------eEEEEEecCCCCEEEEE---------------------------CCCCcEEEEEcCCCcEEE----Eee
Confidence 00111111 112222 223333333332222111 000
Q ss_pred CccceeeccccccccCCCCC-Cccc-ccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCC
Q 003336 256 DLGYKKLSQYCSEFLPDSQN-SLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~-si~s-a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~-s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
. ..+.++. .+.. .... .+ ...+++++.||.|+|||+. .++++..+.+|..+|.+|+|+|+
T Consensus 198 ~------------~~~~~h~~~v~~~~~~~--~~---~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 198 S------------EFPSGHTADVLSLSINS--LN---ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp C------------CSSSSCCSCEEEEEECS--SS---CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred c------------ccCCCCccCeEEEEeec--CC---CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 0 0011111 0110 0000 00 1246778899999999998 56788999999999999999999
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc-----cccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t-----~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
|++|||||.||+ |+|||+.++ ..+..+..... ...|.+++|+|||++|++++.||+|+||
T Consensus 261 ~~~l~s~s~D~~-i~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 261 GQRFGTGSDDGT-CRLFDMRTG--------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp SSEEEEECSSSC-EEEEETTTT--------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCeEEEEcCCCe-EEEEECCCC--------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 999999999998 899999876 33334332111 1238899999999999999999999999
Q ss_pred ecCCCCCceee
Q 003336 408 AINPLGGSVNF 418 (828)
Q Consensus 408 dl~~~gg~~~~ 418 (828)
|+........+
T Consensus 326 d~~~~~~~~~~ 336 (380)
T 3iz6_a 326 DTLLAEMVLNL 336 (380)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCceEEEE
Confidence 99776554444
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.89 E-value=8.9e-21 Score=215.20 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=164.5
Q ss_pred CCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..+.|+.|..+| ++|||.+ +...+.+..|.++|+++++.|+. .+|+.++.
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg--------------~~l~~~~~------------- 405 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDG--------------QTIASASD------------- 405 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTS--------------SCEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCC--------------CEEEEEeC-------------
Confidence 356666666655 8999964 45667777899999999998753 13544432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+++|++||. +++.++++. +...|.+|+|+ +++|++ +.+++|++||+ +++.+.++
T Consensus 406 --------------------d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~ 463 (577)
T 2ymu_A 406 --------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL 463 (577)
T ss_dssp --------------------TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred --------------------CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE
Confidence 178999995 678888876 46799999997 567776 56789999996 56777777
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
..|... + +.++|+. ++.
T Consensus 464 ~~~~~~---------------v----~~~~~sp---------------------------d~~----------------- 480 (577)
T 2ymu_A 464 TGHSSS---------------V----RGVAFSP---------------------------DGQ----------------- 480 (577)
T ss_dssp ECCSSC---------------E----EEEEECT---------------------------TSC-----------------
T ss_pred cCCCCC---------------E----EEEEEcC---------------------------CCC-----------------
Confidence 665321 1 1233331 111
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
.++++..+|.|+|||. +++++..+.+|..+|++|+|+|
T Consensus 481 -----------------------------------------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 481 -----------------------------------------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp -----------------------------------------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred -----------------------------------------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC
Confidence 1223456889999995 6789999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
||++|||++.||+ |+|||. ++ ..+.++ +||. ..|++++|+|||++|++++.|++|+|||
T Consensus 519 dg~~l~s~~~dg~-v~lwd~-~~--------------~~~~~~-~~h~-~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASASDDKT-VKLWNR-NG--------------QLLQTL-TGHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSE-EEEECT-TS--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECcCE-EEEEeC-CC--------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999997 899995 33 345566 4664 4599999999999999999999999997
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=2.3e-20 Score=196.10 Aligned_cols=217 Identities=15% Similarity=0.208 Sum_probs=167.4
Q ss_pred eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEE
Q 003336 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (828)
Q Consensus 40 ~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (828)
....+..|.++|.++++.|+. .+|+.++. | ++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~--------------~~l~s~~~----------d-----------------------g~i 47 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNG--------------EWLASSSA----------D-----------------------KLI 47 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------T-----------------------SCE
T ss_pred eEEEEcccCCcEEEEEECCCC--------------CEEEEeeC----------C-----------------------CeE
Confidence 344556799999999998753 25555442 1 679
Q ss_pred EEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeee
Q 003336 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (828)
Q Consensus 120 rlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAl 195 (828)
++||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|... +
T Consensus 48 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------v-- 110 (312)
T 4ery_A 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---------------V-- 110 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---------------E--
Confidence 9999999999998874 6689999997 566665 56789999999999998888766321 1
Q ss_pred ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCC
Q 003336 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (828)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (828)
..++|.. ++.
T Consensus 111 --~~~~~~~---------------------------~~~----------------------------------------- 120 (312)
T 4ery_A 111 --FCCNFNP---------------------------QSN----------------------------------------- 120 (312)
T ss_dssp --EEEEECS---------------------------SSS-----------------------------------------
T ss_pred --EEEEEcC---------------------------CCC-----------------------------------------
Confidence 1122321 000
Q ss_pred CcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCC
Q 003336 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI 355 (828)
Q Consensus 276 si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~ 355 (828)
.+++++.+|.|+|||+.+++++..+..|..+|.+++|+|+|++|++++.||+ |+|||+..+
T Consensus 121 -----------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~- 181 (312)
T 4ery_A 121 -----------------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASG- 181 (312)
T ss_dssp -----------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTC-
T ss_pred -----------------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC-
Confidence 1233456889999999999999999999999999999999999999999998 899999875
Q ss_pred CCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 356 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
..+..+.... ...|..++|+||+++|++++.||+|+|||+........+.+|..
T Consensus 182 -------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 182 -------------QCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp -------------CEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred -------------ceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 3344443332 34599999999999999999999999999987655566666653
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-20 Score=202.32 Aligned_cols=243 Identities=15% Similarity=0.211 Sum_probs=165.6
Q ss_pred CcEEEEEccCCeEEEEecCCCce-eE-eeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNV-HD-LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~-~e-llS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..++..|.++.++|||++..... .. +...|.+.|+++++.|+. .+|+.++. |
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--------------~~l~s~s~----------D-- 82 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--------------NYLASASF----------D-- 82 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--------------SEEEEEET----------T--
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--------------CEEEEEEC----------C--
Confidence 44555666777999999863211 22 234689999999998853 25655542 1
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce--
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-- 167 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~-- 167 (828)
++|++||+.+++ ++.++. +...|.+|+|+ +++|++ +.+++|++||+.+.+.
T Consensus 83 ---------------------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 83 ---------------------ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp ---------------------SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred ---------------------CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 679999998874 566665 46799999997 567776 5688999999987653
Q ss_pred -EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 168 -l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
+..+..|.. ++ ..++|.. ++.
T Consensus 142 ~~~~~~~h~~---------------~v----~~~~~~p---------------------------~~~------------ 163 (345)
T 3fm0_A 142 CVSVLNSHTQ---------------DV----KHVVWHP---------------------------SQE------------ 163 (345)
T ss_dssp EEEEECCCCS---------------CE----EEEEECS---------------------------SSS------------
T ss_pred EEEEecCcCC---------------Ce----EEEEECC---------------------------CCC------------
Confidence 233333211 00 1122221 000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCe
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPI 324 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~pI 324 (828)
.+++++.||.|+|||+.+++ ++.++.+|..+|
T Consensus 164 ----------------------------------------------~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v 197 (345)
T 3fm0_A 164 ----------------------------------------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197 (345)
T ss_dssp ----------------------------------------------CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ----------------------------------------------EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCce
Confidence 13345678999999998875 567899999999
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCc-cCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCc
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~-~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGT 403 (828)
.+|+|+|+|++||+++.||+ |+|||........... ........++..+. +.....|++++|+|++.+||+++.|++
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 99999999999999999998 8999974321100000 00011223445553 433456999999999999999999999
Q ss_pred EEEEecCCCC
Q 003336 404 SHLFAINPLG 413 (828)
Q Consensus 404 VhIwdl~~~g 413 (828)
|+||++.+..
T Consensus 276 i~vw~~~~~~ 285 (345)
T 3fm0_A 276 IRVFQEDPNS 285 (345)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEeCCCC
Confidence 9999997643
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.88 E-value=3.7e-20 Score=210.13 Aligned_cols=270 Identities=15% Similarity=0.235 Sum_probs=181.8
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.++..+.++.+++||.+ +...+.+..|.++|..+++.|+. .+|+.++.
T Consensus 276 ~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~~~---------------- 323 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDG--------------QTIASASD---------------- 323 (577)
T ss_dssp EEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCC--------------CEEEEEeC----------------
Confidence 44445555669999975 45667777899999999998742 25554442
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
+++|++||+.+.+ +..+. +...|.+++|+ +++|++ +.++.|++||. +++.+.++..|
T Consensus 324 -----------------d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~ 384 (577)
T 2ymu_A 324 -----------------DKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 384 (577)
T ss_dssp -----------------TSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECC
T ss_pred -----------------CCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCC
Confidence 1679999986554 55554 56799999997 567776 56789999995 57778888766
Q ss_pred CCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.. .+..++++| ++||.++.. ..|.-|... .+ +..-+
T Consensus 385 ~~------------~v~~~~~s~dg~~l~~~~~d---------------------------~~v~~~~~~-~~-~~~~~- 422 (577)
T 2ymu_A 385 SS------------SVRGVAFSPDGQTIASASDD---------------------------KTVKLWNRN-GQ-LLQTL- 422 (577)
T ss_dssp SS------------CEEEEEECTTSSCEEEEETT---------------------------SEEEEECTT-CC-EEEEE-
T ss_pred CC------------CeEEEEECCCCCEEEEEeCC---------------------------CEEEEEeCC-CC-EEEEe-
Confidence 42 122345544 566655321 111111100 00 00000
Q ss_pred eccCccceeeccccccccCCCCCCcc-cc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQ-SA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~-sa-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
.++. ..+. .+ +++. ..++++..+|.|+|||+ +++.+..+.+|..+|.+|+|+
T Consensus 423 -~~~~-----------------~~v~~~~~s~d~-------~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 423 -TGHS-----------------SSVWGVAFSPDD-------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp -ECCS-----------------SCEEEEEECTTS-------SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred -cCCC-----------------CCeEEEEECCCC-------CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 0000 0000 01 1111 13566778999999996 567889999999999999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|||++||+++.||+ |+|||.. + ..+..+ .++. ..|.+|+||||+++||+++.||+|+|||+
T Consensus 477 pd~~~las~~~d~~-i~iw~~~-~--------------~~~~~~-~~h~-~~v~~l~~s~dg~~l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 477 PDGQTIASASDDKT-VKLWNRN-G--------------QLLQTL-TGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR- 537 (577)
T ss_dssp TTSCEEEEEETTSE-EEEEETT-S--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred CCCCEEEEEeCCCE-EEEEcCC-C--------------CEEEEE-eCCC-CCEEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence 99999999999997 8999953 2 244455 3554 45999999999999999999999999996
Q ss_pred CCCCceeeccCCCCCC
Q 003336 411 PLGGSVNFQPTDANFT 426 (828)
Q Consensus 411 ~~gg~~~~~~H~~~~~ 426 (828)
+......+.+|...+.
T Consensus 538 ~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 538 NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp TSCEEEEEECCSSCEE
T ss_pred CCCEEEEEcCCCCCEE
Confidence 3445567888865443
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.3e-20 Score=192.98 Aligned_cols=250 Identities=10% Similarity=0.092 Sum_probs=178.1
Q ss_pred CcEEEEE-ccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.++|+.| .++.++|||+.. +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 94 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT--------------KYCVTGSA-------------- 94 (369)
T ss_dssp SCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCC--------------CEEEEEeC--------------
Confidence 4555555 455699999987 56667777899999999998742 25554442
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE-eC-----CEEEEEECCCCceE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QA-----AQVHCFDAATLEIE 168 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs-~~-----~~I~IwDl~t~~~l 168 (828)
+++|++||+.+++++..+.+...|.+++|+ +++|+++ .+ +.|++||+.+.+..
T Consensus 95 -------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 95 -------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp -------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred -------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 178999999999999999999999999997 5667664 44 79999999876533
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
..+...... ++. .+.. .. ....+...+.
T Consensus 156 ~~~~~~~~~--------------~~~------~~~~------~~-------------------~~~~~~~~~~------- 183 (369)
T 3zwl_B 156 HELTKVSEE--------------PIH------KIIT------HE-------------------GLDAATVAGW------- 183 (369)
T ss_dssp CCEEEECSS--------------CSE------EEEC------CT-------------------TCCCEEEEEE-------
T ss_pred eeecccccc--------------eee------eccC------Cc-------------------CccceeEEEE-------
Confidence 322211000 000 0000 00 0000000000
Q ss_pred ceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEE
Q 003336 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISAL 327 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~~~i~~f~aH~~pIsaL 327 (828)
.|+ + ..++.+..+|.|++||+.+ ++.+..+..|..+|.++
T Consensus 184 ---------------------~~~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 184 ---------------------STK---------------G---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp ---------------------CGG---------------G---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------cCC---------------C---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 000 0 1234456789999999999 78999999999999999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC-----
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG----- 402 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG----- 402 (828)
+|+|+|++|++++.||+ |+|||+.++ ..+..+. ....+..++|+|+++++++++.++
T Consensus 225 ~~~~~~~~l~~~~~d~~-i~v~d~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTN-SFLVDVSTL--------------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EECCCCCEEEEecCCce-EEEEECCCC--------------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999999999999997 899999876 3344443 234599999999999999999999
Q ss_pred ---------cEEEEecCCCCCceeeccCCCC
Q 003336 403 ---------TSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 403 ---------TVhIwdl~~~gg~~~~~~H~~~ 424 (828)
++++||+........+.+|...
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 317 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGP 317 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCc
Confidence 8999999887666777777543
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.3e-20 Score=198.72 Aligned_cols=271 Identities=14% Similarity=0.162 Sum_probs=177.0
Q ss_pred cEEEEEcc-CCeEEEEecCCCce-eEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 19 RVLLLGYR-SGFQVWDVEEADNV-HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 19 ~vLl~Gy~-~G~qVWdv~~~~~~-~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..|+.|.. +.++|||++..+.. ...+..|.++|.++++.|+. .+|+.++.
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 106 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--------------SKVFTASC-------------- 106 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--------------CEEEEEcC--------------
Confidence 55665554 55999999874333 36777899999999998853 25554442
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEE--c--CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC--S--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~--S--~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+++|++||+++++.+....+...|.+++| + +++|++ +.++.|++||+.+++.+.++
T Consensus 107 -------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 107 -------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp -------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred -------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 17899999999999998889999999999 5 455555 56889999999999988888
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
..+.... .+......++.+.. +..+..|.........
T Consensus 168 ~~~~~~~-------------~~~~~~~~~~~~~~---------------------------~~~i~~~~~~~~~~~~--- 204 (368)
T 3mmy_A 168 QLPERCY-------------CADVIYPMAVVATA---------------------------ERGLIVYQLENQPSEF--- 204 (368)
T ss_dssp ECSSCEE-------------EEEEETTEEEEEEG---------------------------GGCEEEEECSSSCEEE---
T ss_pred ecCCCce-------------EEEecCCeeEEEeC---------------------------CCcEEEEEeccccchh---
Confidence 7643110 11111222222110 0011111110000000
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCC------
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS------ 322 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~------ 322 (828)
..+.... .....+....+. .... ...++.+..+|.|+|||+... ..+..+.+|..
T Consensus 205 ~~~~~~~--~~~~~~~~~~~~---------~~~~-----~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 205 RRIESPL--KHQHRCVAIFKD---------KQNK-----PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp EECCCSC--SSCEEEEEEEEC---------TTSC-----EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred hhccccc--cCCCceEEEccc---------CCCC-----CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 0000000 000000000000 0000 011556778999999999987 67788888876
Q ss_pred ------CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEE
Q 003336 323 ------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (828)
Q Consensus 323 ------pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 396 (828)
+|.+++|+|+|++||+++.||+ |+|||+.++ ..+..+. ++. ..|.+++|+||+++||
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~~~-~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDAR--------------TKLKTSE-QLD-QPISACCFNHNGNIFA 331 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEECC-CCS-SCEEEEEECTTSSCEE
T ss_pred ccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCC--------------cEEEEec-CCC-CCceEEEECCCCCeEE
Confidence 7999999999999999999998 899999876 4555663 443 4599999999999999
Q ss_pred EEeCCCcEEEEecCCC
Q 003336 397 ISSSRGTSHLFAINPL 412 (828)
Q Consensus 397 s~S~DGTVhIwdl~~~ 412 (828)
+++.|+..+.|++-..
T Consensus 332 ~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 332 YASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECCCSTTCGGGCCT
T ss_pred EEecccccccccccCC
Confidence 9999997777766543
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-20 Score=203.40 Aligned_cols=276 Identities=11% Similarity=0.120 Sum_probs=179.9
Q ss_pred CcEEEEEc-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.++|+.|. ++.++|||. .+.....+..|.++|.++++.|+. .+|+.++.
T Consensus 120 ~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~-------------- 169 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG--------------THIISMDV-------------- 169 (425)
T ss_dssp SSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC--------------CEEEEEec--------------
Confidence 45555555 445999993 356677777899999999998753 24554442
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC-C---------------EEEEEEc--CCEEEEEeCCEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-P---------------IYSVRCS--SRVVAICQAAQVH 158 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s-~---------------V~sV~~S--~riLAVs~~~~I~ 158 (828)
+++|++||+++++.+..+.... . |.++.++ ..+++.+.++.|+
T Consensus 170 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 170 -------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230 (425)
T ss_dssp -------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred -------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Confidence 1679999999999999988754 3 7888885 4455557788999
Q ss_pred EEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcce
Q 003336 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV 236 (828)
Q Consensus 159 IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V 236 (828)
+||+.+.+.+..+..+... +..+++++ ++|+.+... ..+
T Consensus 231 ~~d~~~~~~~~~~~~~~~~------------i~~~~~~~~~~~l~~~~~d---------------------------~~i 271 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGP------------ISVLEFNDTNKLLLSASDD---------------------------GTL 271 (425)
T ss_dssp EEETTCSSCSEEECCCSSC------------EEEEEEETTTTEEEEEETT---------------------------SCE
T ss_pred EEEcCCCceeeeeccCCCc------------eEEEEECCCCCEEEEEcCC---------------------------CEE
Confidence 9999999888887665321 22344443 455554311 111
Q ss_pred eeeecccccceeceeEeccCccceeeccccccccCCCCCCccc-ccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE
Q 003336 237 AHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA 315 (828)
Q Consensus 237 a~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~s-a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~ 315 (828)
..|.....+.+. .+. .....+.. ... .+ +.++.+..+|.|+|||+.+++++.
T Consensus 272 ~i~d~~~~~~~~------------~~~--------~~~~~i~~~~~~---~~----~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 272 RIWHGGNGNSQN------------CFY--------GHSQSIVSASWV---GD----DKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp EEECSSSBSCSE------------EEC--------CCSSCEEEEEEE---TT----TEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEECCCCccce------------Eec--------CCCccEEEEEEC---CC----CEEEEEeCCCcEEEEECCCCcEeE
Confidence 111111111000 000 00000000 000 01 135567789999999999999999
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCC------CceeEEEEEecCCccc-cEEEEEE
Q 003336 316 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG------TSYVHLYRLQRGLTNA-VIQDISF 388 (828)
Q Consensus 316 ~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~------~~~~~l~~L~RG~t~a-~I~sIaF 388 (828)
.+..|..+|.+++|+|+|++||+++.||. |+|||+..+........+.. .....+..+ +++... .|.+++|
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSW 402 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEE
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEc
Confidence 99999999999999999999999999998 89999976410000000000 000144455 344333 6999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecC
Q 003336 389 SDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 389 SpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+||+++||+++.||+|+||++.
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999985
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.88 E-value=7.6e-21 Score=206.68 Aligned_cols=187 Identities=12% Similarity=0.142 Sum_probs=141.6
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL-~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|++||+.+++.+..+ .+...|.+++|+ +++|++ +.+++|++||+.+++.+.++..|...
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------------- 183 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--------------- 183 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC---------------
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc---------------
Confidence 67999999999998887 467899999997 566666 56789999999999988888765321
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+ .-|+|.. ++.
T Consensus 184 v----~~~~~~~---------------------------~~~-------------------------------------- 194 (420)
T 3vl1_A 184 V----TDIAIID---------------------------RGR-------------------------------------- 194 (420)
T ss_dssp E----EEEEEET---------------------------TTT--------------------------------------
T ss_pred E----EEEEEcC---------------------------CCC--------------------------------------
Confidence 1 1123321 011
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC---C---------------------CCeEEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---K---------------------SPISALC 328 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH---~---------------------~pIsaLa 328 (828)
.++++..+|.|+|||+.+++++..+..| . .+|.+++
T Consensus 195 --------------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 195 --------------------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred --------------------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1233456889999999999999998853 3 4444555
Q ss_pred EcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEEeCCCcEEEE
Q 003336 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (828)
Q Consensus 329 FSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S~DGTVhIw 407 (828)
|+|+|++|++++.||+ |+|||+..+ ..+..+..++. ..|.+++|+|+++ +|++++.||+|+||
T Consensus 255 ~s~~~~~l~~~~~dg~-i~i~d~~~~--------------~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGV-ITVHNVFSK--------------EQTIQLPSKFT-CSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp SSCTTEEEEEEETTSC-EEEEETTTC--------------CEEEEECCTTS-SCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCC--------------ceeEEcccccC-CCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 6899999999999998 899999875 34555554443 4599999999999 99999999999999
Q ss_pred ecCCCCC-ceeeccCCC
Q 003336 408 AINPLGG-SVNFQPTDA 423 (828)
Q Consensus 408 dl~~~gg-~~~~~~H~~ 423 (828)
|+..... ...+..|..
T Consensus 319 d~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 319 DLRSPECPVGEFLINEG 335 (420)
T ss_dssp ETTCTTSCSEEEEESTT
T ss_pred EcCCCcCchhhhhccCC
Confidence 9988655 456666543
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.6e-20 Score=197.64 Aligned_cols=270 Identities=13% Similarity=0.171 Sum_probs=163.2
Q ss_pred cEEEEEccCCeEEEEecCCC-ceeEee-ee-ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 19 RVLLLGYRSGFQVWDVEEAD-NVHDLV-SR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~-~~~ell-S~-hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.++..+.++.++|||+.... .....+ .. |.++|+++++.|+. .+||.++. |
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~las~s~----------D-- 79 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--------------SLLAAGSF----------D-- 79 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS--------------SEEEEEET----------T--
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC--------------CEEEEEeC----------C--
Confidence 34444556679999998632 233334 23 88999999998853 25665542 1
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCC-------CcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCC
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS-------QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-------g~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t 164 (828)
++|+|||+.. .+++.++. +...|.+|+|+ +++||+ +.+++|++||+.+
T Consensus 80 ---------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 80 ---------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp ---------------------SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred ---------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 6799999953 45666665 46799999997 567776 5688999999953
Q ss_pred ----CceEEEEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003336 165 ----LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (828)
Q Consensus 165 ----~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~ 238 (828)
.+++.++..|... +..++++| ++||.++ .+.+|.-
T Consensus 139 ~~~~~~~~~~~~~h~~~------------v~~v~~~p~~~~l~s~s---------------------------~D~~i~i 179 (330)
T 2hes_X 139 SGEEYECISVLQEHSQD------------VKHVIWHPSEALLASSS---------------------------YDDTVRI 179 (330)
T ss_dssp TCCCCEEEEEECCCSSC------------EEEEEECSSSSEEEEEE---------------------------TTSCEEE
T ss_pred CCCCeEEEEEeccCCCc------------eEEEEECCCCCEEEEEc---------------------------CCCeEEE
Confidence 2456666665321 22234433 4444442 1222322
Q ss_pred eecccc--cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-----
Q 003336 239 YAKESS--KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----- 311 (828)
Q Consensus 239 ~A~~ss--k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~----- 311 (828)
|-.... +.+. ...|+.+. + ++-.+.|+. .+ ..+++++.||+|+|||+.++
T Consensus 180 W~~~~~~~~~~~---~~~~h~~~--v--~~~~~~~~~-------------~~---~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 180 WKDYDDDWECVA---VLNGHEGT--V--WSSDFDKTE-------------GV---FRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEETTEEEEEE---EECCCSSC--E--EEEEECCSS-------------SS---CEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EECCCCCeeEEE---EccCCCCc--E--EEEEecCCC-------------Ce---eEEEEEeCCCeEEEEEecCCCcccc
Confidence 221110 0000 00011110 0 000001110 01 13567788999999999764
Q ss_pred ---cEEEEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEE
Q 003336 312 ---NVIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS 387 (828)
Q Consensus 312 ---~~i~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIa 387 (828)
.++..+.. |..+|.+|+|++++ +||+++.||+ |+|||...+ ....+..+..++....|.+++
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~------------~~~~~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDG------------EWKVFAKRALCHGVYEINVVK 302 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETT------------EEEEEEEESCTTTTSCEEEEE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCC------------ceEEEeccccccccceEEEEE
Confidence 45666765 99999999999776 7999999998 899998754 112233333455443699999
Q ss_pred Ecc--CCCEEEEEeCCCcEEEEecCC
Q 003336 388 FSD--DSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 388 FSp--Dg~~LAs~S~DGTVhIwdl~~ 411 (828)
|+| |+++||+++.||+|+||++..
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC--
T ss_pred EecCCCceEEEEecCCCcEEEEEecc
Confidence 999 799999999999999999865
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.87 E-value=1.6e-19 Score=188.27 Aligned_cols=262 Identities=15% Similarity=0.258 Sum_probs=174.5
Q ss_pred CCcEEEEEccCCeEEEEecCCCceeEee--e--eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEADNVHDLV--S--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ell--S--~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
..++|+.|.++.++|||++.......+. . .|.++|.++++.|+. .+|++++.
T Consensus 62 ~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~---------- 117 (337)
T 1gxr_A 62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--------------CTLIVGGE---------- 117 (337)
T ss_dssp SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--------------SEEEEEES----------
T ss_pred CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--------------CEEEEEcC----------
Confidence 3567777777789999998744322222 2 578999999998752 25554442
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCc
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE 166 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~ 166 (828)
.++|++||+++++ .+..+.. ...|.+++++ +++|++ +.++.|++||+.+++
T Consensus 118 -----------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 118 -----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp -----------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -----------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 1789999999988 4445543 5689999996 566666 567899999999999
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ss 244 (828)
.+.++..+.. .+..+++++ ++|+.+.. +..+..|.....
T Consensus 175 ~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~---------------------------dg~i~~~d~~~~ 215 (337)
T 1gxr_A 175 LVRQFQGHTD------------GASCIDISNDGTKLWTGGL---------------------------DNTVRSWDLREG 215 (337)
T ss_dssp EEEEECCCSS------------CEEEEEECTTSSEEEEEET---------------------------TSEEEEEETTTT
T ss_pred eeeeeecccC------------ceEEEEECCCCCEEEEEec---------------------------CCcEEEEECCCC
Confidence 8888866532 122344443 45554421 112222222221
Q ss_pred cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCe
Q 003336 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI 324 (828)
Q Consensus 245 k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pI 324 (828)
+.+.. +.... .+ ++-.. +++ + ..++.+..+|.|++||+.+++. ..+..|..+|
T Consensus 216 ~~~~~----~~~~~--~v--~~~~~-----------s~~----~---~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v 268 (337)
T 1gxr_A 216 RQLQQ----HDFTS--QI--FSLGY-----------CPT----G---EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV 268 (337)
T ss_dssp EEEEE----EECSS--CE--EEEEE-----------CTT----S---SEEEEEETTSCEEEEETTSSCE-EEECCCSSCE
T ss_pred ceEee----ecCCC--ce--EEEEE-----------CCC----C---CEEEEEcCCCcEEEEECCCCCe-EEEcCCccce
Confidence 11110 00000 00 00000 111 1 1345567789999999998875 4678999999
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
.+++|+|+|++|++++.||. |+|||+..+ ..+..+. + ...|.+++|+||+++|++++.||+|
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~--------------~~~~~~~--~-~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNL-LNAWRTPYG--------------ASIFQSK--E-SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EEEEECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE--C-SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred eEEEECCCCCEEEEecCCCc-EEEEECCCC--------------eEEEEec--C-CCcEEEEEECCCCCEEEEecCCCeE
Confidence 99999999999999999997 899999875 2333332 2 2459999999999999999999999
Q ss_pred EEEec
Q 003336 405 HLFAI 409 (828)
Q Consensus 405 hIwdl 409 (828)
+||++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=2.5e-20 Score=202.54 Aligned_cols=250 Identities=12% Similarity=0.108 Sum_probs=172.3
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.+++.+.++.++|||+.. +....++..|.++|.++++.|+. .+|+.++.
T Consensus 111 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~---------------- 159 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSG--------------EALISSSQ---------------- 159 (420)
T ss_dssp EEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCC--------------CEEEEEeC----------------
Confidence 444455566699999986 56666777899999999998852 25554442
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcC
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
+++|++||+++++.+.++. +...|.+++|+ +++|++ +.+++|++||+.+++.+.++..+
T Consensus 160 -----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 160 -----------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp -----------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred -----------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 1789999999999999987 57799999996 556665 66789999999999998888765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
..... .+. .+++.... ...+....
T Consensus 223 ~~~~~---------~v~-------~~~~~~~~--------------------------~~~~~~~~-------------- 246 (420)
T 3vl1_A 223 ENPHD---------GVN-------SIALFVGT--------------------------DRQLHEIS-------------- 246 (420)
T ss_dssp TBTTC---------CEE-------EEEEEECC--------------------------CSSCGGGC--------------
T ss_pred CCCCC---------Ccc-------EEEEecCC--------------------------cceeeecc--------------
Confidence 32110 111 12222100 00000000
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSG 333 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG 333 (828)
. ..+. .+. .++ +| ..++.+..+|.|+|||+.+++.+..+. .|..+|.+|+|+|+|
T Consensus 247 --~--~~v~------------~~~-~s~----~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 247 --T--SKKN------------NLE-FGT----YG---KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp --C--CCCC------------TTC-SSC----TT---EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred --c--Cccc------------ceE-EcC----CC---CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence 0 0000 000 001 01 134566789999999999998877775 688999999999999
Q ss_pred C-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 334 I-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 334 ~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
. +|++++.||+ |+|||+..+. ..+..+. ++....|.++. ++++++|++++.||+|+||++...
T Consensus 303 ~~~l~~g~~dg~-i~vwd~~~~~-------------~~~~~~~-~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 303 ANYIYAGYENGM-LAQWDLRSPE-------------CPVGEFL-INEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTEEEEEETTSE-EEEEETTCTT-------------SCSEEEE-ESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCT
T ss_pred CCEEEEEeCCCe-EEEEEcCCCc-------------Cchhhhh-ccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCC
Confidence 9 9999999997 8999998751 1123333 22334588885 568899999999999999999874
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.6e-20 Score=197.52 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=165.8
Q ss_pred CcEEEEE-ccCCeEEEEecCC-CceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 18 RRVLLLG-YRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~-~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.+.|+.| .++.++|||++.. ......+..|.++|.++++.|.. ...+|+.++. |
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~~~l~s~~~----------d-- 78 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY----------D-- 78 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------GCSEEEEEET----------T--
T ss_pred CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC------------CCCEEEEecc----------C--
Confidence 4555555 5666999999842 23445566789999999997631 0135655543 1
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCce
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~~ 167 (828)
++|++||+++++ .+..+. +...|.+++|+ +++|++ +.++.|++||+.+.+.
T Consensus 79 ---------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 79 ---------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp ---------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred ---------------------CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 679999999997 556655 46799999997 446665 6788999999998743
Q ss_pred --EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 168 --EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 168 --l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
...+..+... + ..++|.... ... .+.
T Consensus 138 ~~~~~~~~~~~~---------------v----~~~~~~~~~-------------~~~---------~~~----------- 165 (379)
T 3jrp_A 138 TSPIIIDAHAIG---------------V----NSASWAPAT-------------IEE---------DGE----------- 165 (379)
T ss_dssp CCEEEEECCTTC---------------E----EEEEECCCC---------------------------------------
T ss_pred eeeEEecCCCCc---------------e----EEEEEcCcc-------------ccc---------ccc-----------
Confidence 3344333210 1 123333100 000 000
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCC
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHK 321 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~----~i~~f~aH~ 321 (828)
.. ..++ ...++++..+|.|+|||+.+++ .+..+.+|.
T Consensus 166 -----------~~----------~~~~------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 166 -----------HN----------GTKE------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp -------------------------CT------------------TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred -----------cc----------CCCC------------------CCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 00 0000 0124456678999999998754 567888999
Q ss_pred CCeEEEEEcCC---CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 322 SPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 322 ~pIsaLaFSPd---G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
.+|.+|+|+|+ |++||+++.||+ |+|||+..+.. ......+........|.+++|+||+++|+++
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 99999999999 999999999998 89999987510 0111122111123459999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 003336 399 SSRGTSHLFAINPLG 413 (828)
Q Consensus 399 S~DGTVhIwdl~~~g 413 (828)
+.||+|+||++...+
T Consensus 275 ~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 275 GGDNKVTLWKENLEG 289 (379)
T ss_dssp ESSSSEEEEEEEETT
T ss_pred cCCCcEEEEeCCCCC
Confidence 999999999998643
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.3e-19 Score=198.43 Aligned_cols=269 Identities=12% Similarity=0.131 Sum_probs=182.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeee-ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~-hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..++++|.++.++|||++. +....++.. |.+.|.++++.|+. .+|++++.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~--------------~~l~~~~~-------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG--------------SFLSVGLG-------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC--------------CEEEEECC--------------
Confidence 5688889888899999987 556555554 78999999998742 25655542
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCC-CceEEEEEc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAAT-LEIEYAILT 173 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t-~~~l~tL~t 173 (828)
+++|++||+.+++.+.++.. ...|.++.+++++|++ +.++.|++||+.+ .+.+.++..
T Consensus 155 -------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 215 (401)
T 4aez_A 155 -------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215 (401)
T ss_dssp -------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence 16799999999999999964 6799999999888776 5678999999994 556677766
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
|... +..+++++ ++|+.++. +..|..|.....+.+..
T Consensus 216 ~~~~------------v~~~~~~~~~~~l~s~~~---------------------------d~~v~iwd~~~~~~~~~-- 254 (401)
T 4aez_A 216 HSSE------------VCGLAWRSDGLQLASGGN---------------------------DNVVQIWDARSSIPKFT-- 254 (401)
T ss_dssp CSSC------------EEEEEECTTSSEEEEEET---------------------------TSCEEEEETTCSSEEEE--
T ss_pred CCCC------------eeEEEEcCCCCEEEEEeC---------------------------CCeEEEccCCCCCccEE--
Confidence 6421 22344443 45555532 11222222211111100
Q ss_pred EeccCccceeeccccccccCCCCCCccc-c-cCCCCCCCccCCccccc--CCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDA--DNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~s-a-~~~~k~~g~~~g~~~s~--~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL 327 (828)
..+.. ..+.. + ++.. ...++++ ..+|.|++||+.+++++..+. |..+|.++
T Consensus 255 -~~~~~-----------------~~v~~~~~~p~~------~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 255 -KTNHN-----------------AAVKAVAWCPWQ------SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp -ECCCS-----------------SCCCEEEECTTS------TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred -ecCCc-----------------ceEEEEEECCCC------CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 00000 00000 0 1110 0123333 379999999999999999886 56789999
Q ss_pred EEcCCCCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEE
Q 003336 328 CFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 328 aFSPdG~lLATaS--~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
+|+|+|++|++++ .||. |+|||+..+ ....+..+. ++. ..|.+++|+||+++|++++.||+|+
T Consensus 310 ~~s~~~~~l~~~~g~~dg~-i~v~~~~~~------------~~~~~~~~~-~h~-~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNN-LSIWSYSSS------------GLTKQVDIP-AHD-TRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EECSSSSEEEEEECTTTCE-EEEEEEETT------------EEEEEEEEE-CCS-SCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EECCCCCeEEEEeecCCCc-EEEEecCCc------------cceeEEEec-CCC-CCEEEEEECCCCCEEEEEeCCCcEE
Confidence 9999999999965 7887 899999764 234444453 443 4599999999999999999999999
Q ss_pred EEecCCCCCc
Q 003336 406 LFAINPLGGS 415 (828)
Q Consensus 406 Iwdl~~~gg~ 415 (828)
||++......
T Consensus 375 iw~~~~~~~~ 384 (401)
T 4aez_A 375 FWRVYDGDHV 384 (401)
T ss_dssp EEECCC----
T ss_pred EEECCCCccc
Confidence 9999875443
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.87 E-value=3.5e-20 Score=192.14 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=168.3
Q ss_pred CcEEEEEc-cCCeEEEEecCCCc---eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADN---VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~---~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
...|+.|. ++.++|||+..... ....+..|.++|.++++.|.. ...+|+.++. |
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------d~~~l~s~~~----------d 80 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE------------YGRIIASASY----------D 80 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG------------GCSEEEEEET----------T
T ss_pred CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC------------CCCEEEEEcC----------C
Confidence 44555554 55599999986432 334455789999999998720 0125555542 1
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCCC---------cEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEE
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ---------SYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVH 158 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg---------~~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~ 158 (828)
++|++||++++ +.+..+. +...|.+++|+ +++|++ +.++.|+
T Consensus 81 -----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 81 -----------------------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp -----------------------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred -----------------------CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 67999999988 5577775 46799999997 456665 6688999
Q ss_pred EEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003336 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (828)
Q Consensus 159 IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~ 238 (828)
+||+.+++.+..+....... .+. +. +. .....+..
T Consensus 138 iwd~~~~~~~~~~~~~~~~~-------------~~~-------~~-------------~~------------~~~~~~~~ 172 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMK-------------VLS-------IP-------------PA------------NHLQSDFC 172 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEE-------------SCS-------CC-------------CS------------SCSCCCEE
T ss_pred EecCCChHHhcccccccccc-------------ccc-------cc-------------cC------------CcccceeE
Confidence 99999887543322100000 000 00 00 00000000
Q ss_pred eecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE--EEE
Q 003336 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQ 316 (828)
Q Consensus 239 ~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~--i~~ 316 (828)
+ ...|+.. ....++.+..++.+.+|+...++. +..
T Consensus 173 ------------~----------------~~~p~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 173 ------------L----------------SWCPSRF---------------SPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp ------------E----------------EECCCSS---------------SCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred ------------E----------------EeccCCC---------------CCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 0 0001000 001234556778898888887765 788
Q ss_pred eccCCCCeEEEEEcCCC----CEEEEEecCCCEEEEEeCCCCCCCCCC-------------------ccC----------
Q 003336 317 FRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSS-------------------ACD---------- 363 (828)
Q Consensus 317 f~aH~~pIsaLaFSPdG----~lLATaS~DGt~I~IWdi~~~~~~~~~-------------------~~~---------- 363 (828)
+.+|..+|.+|+|+|+| ++|++++.||+ |+|||+..+...... ..+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 89999999999999999 89999999998 899999764100000 000
Q ss_pred ---CCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 364 ---AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 364 ---~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.......+..+ +++. ..|.+++|+||+++||+++.||+|+||++...+....+.
T Consensus 289 ~~~~~~~~~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 289 ELQSNLQVELLSEH-DDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp --CCSEEEEEEEEE-CTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred eecccccccEEEEE-eccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 00011334444 4554 359999999999999999999999999999865554443
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.87 E-value=2.2e-19 Score=188.38 Aligned_cols=243 Identities=11% Similarity=0.156 Sum_probs=161.4
Q ss_pred cEEEEEccCCeEEEEecCCCc----eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 19 RVLLLGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~----~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.++..|.++.++|||+..... ....+..|.++|.++.+.|+. .+|+.++.
T Consensus 53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------------~~l~s~~~------------ 106 (340)
T 4aow_A 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------------QFALSGSW------------ 106 (340)
T ss_dssp EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET------------
T ss_pred EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--------------CEEEEEcc------------
Confidence 344566777899999976322 234556789999999998753 24544432
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEE-EEeCCEEEEEECCCCceEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLA-Vs~~~~I~IwDl~t~~~l~t 170 (828)
++.|++|+...+........ ...+..+.++ .++|+ .+.++.+++||+........
T Consensus 107 ---------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 107 ---------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp ---------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ---------------------cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 27899999999998888776 4566777775 44555 46788999999876543221
Q ss_pred E-EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003336 171 I-LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (828)
Q Consensus 171 L-~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~las 249 (828)
. ..+. ..+ ..+++... +.
T Consensus 166 ~~~~~~---------------~~v----~~~~~~~~---------------------------~~--------------- 184 (340)
T 4aow_A 166 QDESHS---------------EWV----SCVRFSPN---------------------------SS--------------- 184 (340)
T ss_dssp CSSSCS---------------SCE----EEEEECSC---------------------------SS---------------
T ss_pred Eecccc---------------Ccc----cceEEccC---------------------------CC---------------
Confidence 1 1110 000 01122100 00
Q ss_pred eeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 250 Gl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
...+++++.++.|++||+.+++++..+.+|..+|.+|+|
T Consensus 185 -----------------------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 185 -----------------------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp -----------------------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE
Confidence 001234457889999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCC-----CCC--------Cc----cCCCCceeEEEEEe-----------------
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGIL-----GTS--------SA----CDAGTSYVHLYRLQ----------------- 375 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~-----~~~--------~~----~~~~~~~~~l~~L~----------------- 375 (828)
+|+|++||+|+.||+ |+|||+..... +.. .. ........+++.++
T Consensus 224 s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 224 SPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp CTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred CCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence 999999999999997 89999987511 000 00 00001112223221
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.++ ...|.+++|+|||++||+++.||+|+|||+.++
T Consensus 303 ~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 303 KAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp -CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 122 234899999999999999999999999999874
No 44
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.87 E-value=2.9e-20 Score=200.14 Aligned_cols=108 Identities=18% Similarity=0.292 Sum_probs=91.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEEcCCCCEEEEEecC---CCEEEEEeCCCCCCCCCCccCCC
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRA---H---KSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~a---H---~~pIsaLaFSPdG~lLATaS~D---Gt~I~IWdi~~~~~~~~~~~~~~ 365 (828)
+.+..+|.|+|||+.+++++..+.. | ..+|.+++|+|+|++|++++.| |. |+|||+..+
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~----------- 268 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFG----------- 268 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTC-----------
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCC-----------
Confidence 4456789999999999999999999 9 9999999999999999999999 87 899999875
Q ss_pred CceeEEEEEecC-------------CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 366 TSYVHLYRLQRG-------------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 366 ~~~~~l~~L~RG-------------~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
..+..+. + + ...|.+++|+||+++|++++.||+|+|||+........+.
T Consensus 269 ---~~~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 269 ---ERIGSLS-VPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp ---CEEEEEC-BC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ---cccceec-cCccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 3444443 2 3 2459999999999999999999999999998876656666
No 45
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=1.6e-20 Score=199.96 Aligned_cols=251 Identities=17% Similarity=0.190 Sum_probs=162.0
Q ss_pred CcEEEEEccCCeEEEEecCCCc-eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADN-VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~-~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.++..+.++.++|||+..... ....+..|.++|.++++.|.. ...+|+.++. |
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------------~~~~l~s~s~----------D--- 80 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------------YGNILASCSY----------D--- 80 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------------GSSCEEEEET----------T---
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------------CCCEEEEEEC----------C---
Confidence 3455556667799999986321 234566799999999997521 0124554442 2
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCceE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIE 168 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S~----riLAV-s~~~~I~IwDl~t~~~l 168 (828)
++|+|||+++++ .+.++. +...|.+|+|++ .+|++ +.+++|++||+.+....
T Consensus 81 --------------------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 81 --------------------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp --------------------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred --------------------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 779999999984 555664 467899999973 46665 56889999999876422
Q ss_pred EEE---EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 169 YAI---LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 169 ~tL---~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
... ..|.. ... .+++.... . .+..+.+
T Consensus 141 ~~~~~~~~h~~------------~v~-------~~~~~~~~-------------~-----------~~~~~~~------- 170 (316)
T 3bg1_A 141 EVKKINNAHTI------------GCN-------AVSWAPAV-------------V-----------PGSLIDH------- 170 (316)
T ss_dssp EECCBTTSSSS------------CBC-------CCEECCCC-------------C-----------C-------------
T ss_pred ceeeeeccccC------------Ccc-------eEEEcccc-------------C-----------Ccccccc-------
Confidence 111 11110 011 12332110 0 0000000
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCC
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS 322 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~ 322 (828)
+.+. .+. . ...+++++.||.|+|||+... +++..|.+|..
T Consensus 171 -------------------------~~~~------~~~---~---~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 171 -------------------------PSGQ------KPN---Y---IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp -------------------------CCSC------CCC---C---CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred -------------------------cccc------Ccc---c---cceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 0000 000 0 013566788999999999765 57788999999
Q ss_pred CeEEEEEcCCC----CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 323 PISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 323 pIsaLaFSPdG----~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
+|.+|+|+|++ .+|||||.||+ |+|||+.....+. .....+ .++ ...|++++|+||+++||++
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~~~~-------~~~~~~----~~~-~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDASSNT-------WSPKLL----HKF-NDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTTCCC-------CBCCEE----EEC-SSCEEEEEECTTTCCEEEE
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCccccc-------hhhhhh----hcC-CCcEEEEEEcCCCCEEEEE
Confidence 99999999997 89999999998 8999987631000 001112 123 2459999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 003336 399 SSRGTSHLFAINPLG 413 (828)
Q Consensus 399 S~DGTVhIwdl~~~g 413 (828)
+.||+|+||++...+
T Consensus 281 ~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 281 GGDNKVTLWKESVDG 295 (316)
T ss_dssp ESSSCEEEEEECTTS
T ss_pred cCCCeEEEEEECCCC
Confidence 999999999987544
No 46
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=194.68 Aligned_cols=247 Identities=15% Similarity=0.185 Sum_probs=167.6
Q ss_pred CcEEEEE-ccCCeEEEEecCCCceeEee------------eeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCC
Q 003336 18 RRVLLLG-YRSGFQVWDVEEADNVHDLV------------SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGS 84 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ell------------S~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~ 84 (828)
...|+.| .++.++|||++.......+. ..|.++|.++++.|.. ..+|+.++.
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~l~s~~~-- 120 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-------------TGMFTSSSF-- 120 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC-------------TTCEEEEET--
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC-------------CcEEEEEeC--
Confidence 3555555 55569999998743332222 1388999999998731 124544432
Q ss_pred CccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcC-----CEEEE-EeCCEEE
Q 003336 85 RSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS-----RVVAI-CQAAQVH 158 (828)
Q Consensus 85 ~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~-----riLAV-s~~~~I~ 158 (828)
+++|++||+++++.+..+.+...+..+.+.. .++++ +.++.|+
T Consensus 121 -------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 121 -------------------------------DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp -------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred -------------------------------CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 1789999999999999999999999999962 25555 6678999
Q ss_pred EEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003336 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (828)
Q Consensus 159 IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~ 238 (828)
+||+.+++.+.++..|... + .-|+|.. ++..
T Consensus 170 ~~d~~~~~~~~~~~~~~~~---------------v----~~~~~~~---------------------------~~~~--- 200 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQE---------------I----LAVSWSP---------------------------RYDY--- 200 (408)
T ss_dssp EEESSSSCCCEEECCCCSC---------------E----EEEEECS---------------------------SCTT---
T ss_pred EEeCCCcceeeeecCCCCc---------------E----EEEEECC---------------------------CCCc---
Confidence 9999999888777654311 1 1123321 0000
Q ss_pred eecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEe
Q 003336 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQF 317 (828)
Q Consensus 239 ~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~-~i~~f 317 (828)
.++++..+|.|+|||+.++. ++..+
T Consensus 201 ------------------------------------------------------ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 201 ------------------------------------------------------ILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred ------------------------------------------------------EEEEEcCCCcEEEEECCCCCcccccc
Confidence 12334567899999998765 44555
Q ss_pred ---------------ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCC--------C-c-------cC---
Q 003336 318 ---------------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS--------S-A-------CD--- 363 (828)
Q Consensus 318 ---------------~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~--------~-~-------~~--- 363 (828)
.+|..+|.+++|+|+|++|++++.||+ |+|||+.++..... . . .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 679999999999999999999999998 89999987521000 0 0 00
Q ss_pred -----CC---------CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce
Q 003336 364 -----AG---------TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV 416 (828)
Q Consensus 364 -----~~---------~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~ 416 (828)
.. .....+..+ .++. ..|.+++|+||+++|++++.||+|+||++.......
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQITML-KGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEEEEE-CCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred eEEEEecCCEEEEEECcCCcceeee-ccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 00 011233334 3443 459999999999999999999999999998865443
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.86 E-value=1.4e-19 Score=200.40 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=169.1
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++..+.++.++|||+.+ ++....+..|.++|.++++.|+. +|+.++.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~---------------~l~s~s~--------------- 181 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG---------------ILVSGST--------------- 181 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT---------------EEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC---------------EEEEEeC---------------
Confidence 3555556666799999987 55666777899999999997631 4444432
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~~l~tL 171 (828)
+++|++||+++++++.++. +...|.+++++ +++|++ +.++.|++||+.+.+.....
T Consensus 182 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 182 ------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred ------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 1679999999999999998 57899999996 255555 67889999999987754433
Q ss_pred EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003336 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (828)
Q Consensus 172 ~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl 251 (828)
..... . +.. .+.. .. ....+..
T Consensus 244 ~~~~~---~-----------~~~------~~~~-------------~~------------~~~~~~~------------- 265 (464)
T 3v7d_B 244 GEEHD---Y-----------PLV------FHTP-------------EE------------NPYFVGV------------- 265 (464)
T ss_dssp ---CC---S-----------SEE------ESCG-------------GG------------CTTEEEE-------------
T ss_pred cccCC---c-----------ceE------eecc-------------CC------------CeEEEEE-------------
Confidence 22100 0 000 0000 00 0000000
Q ss_pred EeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003336 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (828)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP 331 (828)
..++.. .+....+. ...++++..+|.|++||+.+++++..+.+|..+|.+++|+|
T Consensus 266 -~~~~~~-----------------~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 266 -LRGHMA-----------------SVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp -ECCCSS-----------------CEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred -ccCccc-----------------eEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 000000 00000000 01345667899999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 332 dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+|++|++++.||+ |+|||+.++ ..+.++. ++. ..|.+++|+ +++|++++.||+|+|||+..
T Consensus 321 ~~~~l~sg~~dg~-i~vwd~~~~--------------~~~~~~~-~h~-~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 321 ERKRCISASMDTT-IRIWDLENG--------------ELMYTLQ-GHT-ALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTTEEEEEETTSC-EEEEETTTT--------------EEEEEEC-CCS-SCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCc-EEEEECCCC--------------cEEEEEe-CCC-CcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999998 899999876 4556663 443 459999998 58999999999999999987
Q ss_pred CC
Q 003336 412 LG 413 (828)
Q Consensus 412 ~g 413 (828)
..
T Consensus 382 ~~ 383 (464)
T 3v7d_B 382 YS 383 (464)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=1.8e-19 Score=199.37 Aligned_cols=302 Identities=15% Similarity=0.158 Sum_probs=184.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.+++.+.++.++|||+.+ ++....+..|.++|.++.+.++-.... +.|. .+.+..-...........+...
T Consensus 130 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~l~s~-~~dg------~i~vwd~~~~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDNIIISG-STDR------TLKVWNAETGECIHTLYGHTST 201 (445)
T ss_dssp TEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETTEEEEE-ETTS------CEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEecCCEEEEE-eCCC------eEEEEECCcCcEEEEECCCCCc
Confidence 7888999999999999888 456677778888888888876622111 1110 1111111000000000000000
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEcCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p 175 (828)
.... ............+++|++||+.+++.+..+.. ...|.++.+++++|++ +.++.|++||+.+++++.++..|.
T Consensus 202 v~~~--~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 279 (445)
T 2ovr_B 202 VRCM--HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279 (445)
T ss_dssp EEEE--EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred EEEE--EecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence 0000 00000000112358899999999998888864 5688888888666665 567789999999888888886653
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEecc
Q 003336 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (828)
Q Consensus 176 ~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lG 255 (828)
.. +..+++..++|+.++. +..+.-|.....+.+.. ..+
T Consensus 280 ~~------------v~~~~~~~~~l~~~~~---------------------------d~~i~i~d~~~~~~~~~---~~~ 317 (445)
T 2ovr_B 280 NR------------VYSLQFDGIHVVSGSL---------------------------DTSIRVWDVETGNCIHT---LTG 317 (445)
T ss_dssp SC------------EEEEEECSSEEEEEET---------------------------TSCEEEEETTTCCEEEE---ECC
T ss_pred Cc------------eEEEEECCCEEEEEeC---------------------------CCeEEEEECCCCCEEEE---EcC
Confidence 21 1224444455555431 11222222221111100 000
Q ss_pred CccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEEcCC
Q 003336 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPISALCFDPS 332 (828)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a---H~~pIsaLaFSPd 332 (828)
+. ..+...... ...++++..+|.|+|||+.+++++..+.. |..+|.+++|+
T Consensus 318 ~~-----------------~~v~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 318 HQ-----------------SLTSGMELK-------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371 (445)
T ss_dssp CC-----------------SCEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred Cc-----------------ccEEEEEEe-------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence 00 000000000 11356677899999999999999999986 88999999995
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE---ecCCccccEEEEEEccCCCEEEEEeCCCc----EE
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL---QRGLTNAVIQDISFSDDSNWIMISSSRGT----SH 405 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L---~RG~t~a~I~sIaFSpDg~~LAs~S~DGT----Vh 405 (828)
+.+|++|+.||+ |+|||+.++ ..+..+ ..+.....|++++|+||+.+||+++.||+ ++
T Consensus 372 ~~~l~s~~~dg~-v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 372 KNFVITSSDDGT-VKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred CCEEEEEeCCCe-EEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 689999999997 899999876 233344 22233356999999999999999999998 99
Q ss_pred EEecCCC
Q 003336 406 LFAINPL 412 (828)
Q Consensus 406 Iwdl~~~ 412 (828)
|||+...
T Consensus 437 v~df~~~ 443 (445)
T 2ovr_B 437 VLDFDVD 443 (445)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999764
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.86 E-value=4.9e-20 Score=198.35 Aligned_cols=230 Identities=14% Similarity=0.147 Sum_probs=165.6
Q ss_pred cEEEEEccCCeEEEEecCCCce-----eEeeeee-----cCCEEEEEEe----cCCCCcccccCccccCCCE-EEEEeCC
Q 003336 19 RVLLLGYRSGFQVWDVEEADNV-----HDLVSRY-----DGPVSFMQML----PRPITSKRSRDKFAEVRPL-LVFCADG 83 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~-----~ellS~h-----dG~V~~v~~l----P~p~~~~~~~d~F~~~rPL-Lavv~~~ 83 (828)
.+++.+.++.++|||+... .. ...+..| .++|.++++. |+. .+ |+.++.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~l~~~~~- 146 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL--------------SHRLVATDV- 146 (397)
T ss_dssp EEEEEETTSCEEEEEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------------------CEEEEEEET-
T ss_pred EEEEEcCCCCEEEEEccCC-cccccccceeecccccccCCCcEEEEEEeeccCCCC--------------ceEEEEEeC-
Confidence 4555556677999999874 33 4555566 5999999998 531 24 554442
Q ss_pred CCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCC------CcEEE-----EEe--------CCCCEEEEEE
Q 003336 84 SRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS------QSYVH-----MLK--------FRSPIYSVRC 144 (828)
Q Consensus 84 ~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T------g~~V~-----tL~--------f~s~V~sV~~ 144 (828)
.+.|++||+++ ++.+. .+. +...|.+++|
T Consensus 147 --------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 147 --------------------------------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp --------------------------------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred --------------------------------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 16799999998 77666 664 3678999999
Q ss_pred cCC-EEEEE-eCCEEEEEECCCCceEEEEEc---CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcc
Q 003336 145 SSR-VVAIC-QAAQVHCFDAATLEIEYAILT---NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQH 219 (828)
Q Consensus 145 S~r-iLAVs-~~~~I~IwDl~t~~~l~tL~t---~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~ 219 (828)
+.. +|+++ .++.|++||+.+.+.+.++.. |.... .++ ..++|..
T Consensus 195 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~------------~~i----~~i~~~~--------------- 243 (397)
T 1sq9_A 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS------------NSI----RSVKFSP--------------- 243 (397)
T ss_dssp CTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCC------------CCE----EEEEECS---------------
T ss_pred CCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccC------------Ccc----ceEEECC---------------
Confidence 732 66664 568999999999998888876 31000 001 1123321
Q ss_pred cccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCC
Q 003336 220 LMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADN 299 (828)
Q Consensus 220 l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~ 299 (828)
++. .++.+..
T Consensus 244 ------------~~~----------------------------------------------------------~l~~~~~ 253 (397)
T 1sq9_A 244 ------------QGS----------------------------------------------------------LLAIAHD 253 (397)
T ss_dssp ------------STT----------------------------------------------------------EEEEEEE
T ss_pred ------------CCC----------------------------------------------------------EEEEEec
Confidence 011 1122334
Q ss_pred C---CeEEEEECCCCcEEEEecc-------------CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 003336 300 V---GMVIVRDIVSKNVIAQFRA-------------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 300 d---G~V~IwDl~s~~~i~~f~a-------------H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
+ |.|+|||+.+++++..+.+ |..+|.+++|+|+|++|++++.||+ |+|||+..+
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~--------- 323 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK--------- 323 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT---------
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC---------
Confidence 5 8999999999999999999 9999999999999999999999997 899999875
Q ss_pred CCCceeEEEEEec-----CC--------------ccccEEEEEEccCC----------CEEEEEeCCCcEEEEecCCC
Q 003336 364 AGTSYVHLYRLQR-----GL--------------TNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 364 ~~~~~~~l~~L~R-----G~--------------t~a~I~sIaFSpDg----------~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+..+.. ++ ....|.+++|+||+ ++|++++.||+|+||++..+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 -----ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -----EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -----ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 34555541 22 03459999999999 79999999999999999753
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.8e-19 Score=182.04 Aligned_cols=258 Identities=14% Similarity=0.215 Sum_probs=171.7
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.+++.+.++.++|||++. +.....+..|.++|.++++.|+. .+|+.++.+
T Consensus 31 ~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d--------------- 80 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEK--------------ELLLFGGKD--------------- 80 (313)
T ss_dssp EEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTT--------------TEEEEEETT---------------
T ss_pred EEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCC--------------CEEEEecCC---------------
Confidence 444444455599999976 56777788899999999998853 255555421
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCC---cEEEEEe-CCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEc
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQ---SYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg---~~V~tL~-f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|++|++... +.+..+. +...|.++.+++++|++ +.++.|++|| +.+.+..+..
T Consensus 81 ------------------g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 81 ------------------TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp ------------------SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ------------------CeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 56899998664 5566665 46799999999777776 5678999999 6667777766
Q ss_pred CCCccCCCCCCCCCcccceeee---ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAV---GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAl---g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+... ...+++ ...+|+.++. +..+..|. ..+.+
T Consensus 141 ~~~~------------v~~~~~~~~~~~~l~~~~~---------------------------d~~i~i~d--~~~~~--- 176 (313)
T 3odt_A 141 HNAS------------VWDAKVVSFSENKFLTASA---------------------------DKTIKLWQ--NDKVI--- 176 (313)
T ss_dssp CSSC------------EEEEEEEETTTTEEEEEET---------------------------TSCEEEEE--TTEEE---
T ss_pred CCCc------------eeEEEEccCCCCEEEEEEC---------------------------CCCEEEEe--cCceE---
Confidence 5321 111222 1233443321 11121111 00000
Q ss_pred eEeccCccceeeccccccccCCCCCCccc-ccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~s-a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaF 329 (828)
. .+.. .....+.. +... .+.++.+..+|.|+|||+.+++++..+.+|..+|.+++|
T Consensus 177 -~--------~~~~-------~~~~~i~~~~~~~-------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 177 -K--------TFSG-------IHNDVVRHLAVVD-------DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp -E--------EECS-------SCSSCEEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred -E--------EEec-------cCcccEEEEEEcC-------CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence 0 0000 00000000 0000 112566788999999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 330 SPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
+|+| .|++++.||+ |+|||+.++ ..+..+. ++. ..|.+++|+||++ +++++.||+|+||++
T Consensus 234 ~~~~-~l~~~~~dg~-v~iwd~~~~--------------~~~~~~~-~~~-~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 234 LPNG-DIVSCGEDRT-VRIWSKENG--------------SLKQVIT-LPA-ISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp CTTS-CEEEEETTSE-EEEECTTTC--------------CEEEEEE-CSS-SCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ecCC-CEEEEecCCE-EEEEECCCC--------------ceeEEEe-ccC-ceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 9999 5899999997 899999876 3344453 332 3599999999999 557999999999999
Q ss_pred CCC
Q 003336 410 NPL 412 (828)
Q Consensus 410 ~~~ 412 (828)
...
T Consensus 295 ~~~ 297 (313)
T 3odt_A 295 EKS 297 (313)
T ss_dssp CGG
T ss_pred CCC
Confidence 864
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=6.5e-19 Score=195.00 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=150.8
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 116 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
+++|++||+.+++.+.++. +...|.++.++++.|++ +.+++|++||+.+++.+.++..|... +..+
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~------------v~~~ 245 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA------------VRCV 245 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC------------EEEE
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc------------EEEE
Confidence 3789999999999999987 46789999999777766 56889999999999999988876421 1234
Q ss_pred eeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCC
Q 003336 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (828)
Q Consensus 194 Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~ 273 (828)
++.+++|+.++. +..+..|.....+.+.. + .++.
T Consensus 246 ~~~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~-~--~~~~---------------- 279 (445)
T 2ovr_B 246 QYDGRRVVSGAY---------------------------DFMVKVWDPETETCLHT-L--QGHT---------------- 279 (445)
T ss_dssp EECSSCEEEEET---------------------------TSCEEEEEGGGTEEEEE-E--CCCS----------------
T ss_pred EECCCEEEEEcC---------------------------CCEEEEEECCCCcEeEE-e--cCCC----------------
Confidence 444455554431 12222222222111110 0 0000
Q ss_pred CCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCC
Q 003336 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 274 ~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~ 353 (828)
..+.....+ ...++++..+|.|++||+.+++++..+.+|...|.+++| ++.+|++++.||+ |+|||+.+
T Consensus 280 -~~v~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~ 348 (445)
T 2ovr_B 280 -NRVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKT 348 (445)
T ss_dssp -SCEEEEEEC-------SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTT
T ss_pred -CceEEEEEC-------CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCC
Confidence 001000000 123566778999999999999999999999999998887 5779999999998 89999987
Q ss_pred CCCCCCCccCCCCceeEEEEEec--CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 354 GILGTSSACDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~L~R--G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
+ ..+..+.. ++ ...|.+++|+ +++|++++.||+|+|||+........+
T Consensus 349 ~--------------~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 349 G--------------QCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp C--------------CEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred C--------------cEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 5 34455532 12 2459999995 689999999999999999876544444
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.85 E-value=6.9e-19 Score=189.92 Aligned_cols=222 Identities=11% Similarity=0.126 Sum_probs=162.8
Q ss_pred ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCE
Q 003336 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (828)
Q Consensus 39 ~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (828)
.....+..|.+.|.++++.|+. ..+|+.++. | ++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~----------d-----------------------g~ 97 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTH-------------PTTVAVGSK----------G-----------------------GD 97 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSC-------------TTEEEEEEB----------T-----------------------SC
T ss_pred ceEEeccCCCCCEEEEEECCCC-------------CCEEEEEcC----------C-----------------------Ce
Confidence 3445666789999999998742 125655542 1 67
Q ss_pred EEEEECCCCcEEEEEe---CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 119 VHFYSLRSQSYVHMLK---FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 119 VrlWDL~Tg~~V~tL~---f~s~V~sV~~S~---riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
|++||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.+ +.+..+..+.... .
T Consensus 98 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~------------~ 164 (383)
T 3ei3_B 98 IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD------------Y 164 (383)
T ss_dssp EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS------------C
T ss_pred EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC------------C
Confidence 9999999999988886 567999999974 56665 5678999999996 5555554432100 0
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
++ ..+++.. ++.
T Consensus 165 ~v----~~~~~~~---------------------------~~~------------------------------------- 176 (383)
T 3ei3_B 165 WY----CCVDVSV---------------------------SRQ------------------------------------- 176 (383)
T ss_dssp CE----EEEEEET---------------------------TTT-------------------------------------
T ss_pred Ce----EEEEECC---------------------------CCC-------------------------------------
Confidence 01 1123321 000
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEe
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFK 350 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWd 350 (828)
.++++..+|.|++||+ +++++..+.+|..+|.+|+|+|+|+ +|++++.||+ |+|||
T Consensus 177 ---------------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd 233 (383)
T 3ei3_B 177 ---------------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWD 233 (383)
T ss_dssp ---------------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEE
T ss_pred ---------------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEe
Confidence 1234457899999999 6788999999999999999999999 9999999997 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
+..... ....+..+ ++ ...|.+++|+| |+++|++++.|++|+|||+........+..|..
T Consensus 234 ~~~~~~----------~~~~~~~~--~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 234 LRNIKD----------KNSYIAEM--PH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp GGGCCS----------TTCEEEEE--EC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCCCc----------ccceEEEe--cC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 987410 01233444 23 24699999999 999999999999999999998877777777754
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.85 E-value=3e-19 Score=192.49 Aligned_cols=236 Identities=13% Similarity=0.178 Sum_probs=160.2
Q ss_pred CcEEEEEccCCeEEEEecCCC-ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~-~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.++..+.++.++|||++... .+...+..|.++|.++++.|+. .+|+.++. |
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~l~s~s~----------D--- 126 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG--------------NLLATCSR----------D--- 126 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------T---
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC--------------CEEEEEEC----------C---
Confidence 345555667779999998632 2345566799999999998853 25655542 1
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCc---EEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCc--e
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE--I 167 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~---~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~--~ 167 (828)
++|++||+++++ ++..+. +...|.+++|+ +++|++ +.+++|++||+.+.+ +
T Consensus 127 --------------------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 127 --------------------KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp --------------------SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred --------------------CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 679999998874 344554 46689999997 556665 668899999998775 3
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
..++..|... + .-|+|.. +|.
T Consensus 187 ~~~~~~h~~~---------------v----~~l~~sp---------------------------~g~------------- 207 (345)
T 3fm0_A 187 CATLEGHEST---------------V----WSLAFDP---------------------------SGQ------------- 207 (345)
T ss_dssp EEEECCCSSC---------------E----EEEEECT---------------------------TSS-------------
T ss_pred EEEecCCCCc---------------e----EEEEECC---------------------------CCC-------------
Confidence 3455444210 1 1123321 011
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC---------------Cc
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---------------KN 312 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s---------------~~ 312 (828)
.+++++.||.|+|||... .+
T Consensus 208 ---------------------------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 208 ---------------------------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp ---------------------------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 123345677888887522 23
Q ss_pred EEEEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC
Q 003336 313 VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (828)
Q Consensus 313 ~i~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 391 (828)
++.++.+ |...|.+|+|+|++.+||+++.|++ |+||+..+..... .........+.++|. ..|.+|+|+|+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~------~~~~~~~~~~~~~h~-~~V~~v~~~p~ 314 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQ------QPTFSLTAHLHQAHS-QDVNCVAWNPK 314 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCTT------SCCEEEEEEETTSSS-SCEEEEEECSS
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCcc------eeeEEEEeeeccccc-CcEeEeEEeCC
Confidence 5566665 8899999999999999999999998 8999987641100 001122223335654 45999999999
Q ss_pred C-CEEEEEeCCCcEEEEecCCC
Q 003336 392 S-NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 392 g-~~LAs~S~DGTVhIwdl~~~ 412 (828)
+ .+||++|.||+|+||++...
T Consensus 315 ~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp STTEEEEEETTSCEEEEEECC-
T ss_pred CceEEEEcCCCCcEEEEEecCC
Confidence 8 59999999999999999764
No 54
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=2.3e-19 Score=198.70 Aligned_cols=219 Identities=14% Similarity=0.250 Sum_probs=164.9
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.+++.+.++.++|||+.+ ++....+..|.++|.++.+ ++ .+|+.++.
T Consensus 144 ~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~--------------~~l~sg~~--------------- 191 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DE--------------RVIITGSS--------------- 191 (435)
T ss_dssp SEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CC--------------CEEEEEcC---------------
Confidence 4555566666799999987 5677778889999998876 21 25554432
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEE---EEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEY---AIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~---tL~ 172 (828)
+++|++||+.+++.+.++.. ...|.++++++..|++ +.++.|++||+.+.+.+. .+.
T Consensus 192 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 192 ------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp ------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred ------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 16799999999999999975 6689999999777776 567899999999876542 222
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|.. ++. .+++. +
T Consensus 254 ~~~~---------------~v~----~~~~~-----------------------------~------------------- 266 (435)
T 1p22_A 254 GHRA---------------AVN----VVDFD-----------------------------D------------------- 266 (435)
T ss_dssp CCSS---------------CEE----EEEEE-----------------------------T-------------------
T ss_pred CCCC---------------cEE----EEEeC-----------------------------C-------------------
Confidence 2210 000 01110 0
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
..+++++.+|.|+|||+.+++++..+.+|..+|.+++| +
T Consensus 267 ---------------------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~ 305 (435)
T 1p22_A 267 ---------------------------------------KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--R 305 (435)
T ss_dssp ---------------------------------------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--E
T ss_pred ---------------------------------------CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--C
Confidence 01234456899999999999999999999999999999 5
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+.+|++|+.||+ |+|||+.++ ..+..+. ++. ..|.+++| |+++|++++.||+|+|||+...
T Consensus 306 ~~~l~~g~~dg~-i~iwd~~~~--------------~~~~~~~-~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 DRLVVSGSSDNT-IRLWDIECG--------------ACLRVLE-GHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp TTEEEEEETTSC-EEEEETTTC--------------CEEEEEC-CCS-SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred CCEEEEEeCCCe-EEEEECCCC--------------CEEEEEe-CCc-CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 789999999998 899999876 3455553 443 45999999 8999999999999999999654
Q ss_pred C
Q 003336 413 G 413 (828)
Q Consensus 413 g 413 (828)
.
T Consensus 367 ~ 367 (435)
T 1p22_A 367 L 367 (435)
T ss_dssp T
T ss_pred C
Confidence 3
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.85 E-value=4.5e-19 Score=189.03 Aligned_cols=211 Identities=12% Similarity=0.103 Sum_probs=156.6
Q ss_pred EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEE
Q 003336 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (828)
Q Consensus 42 ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrl 121 (828)
..+..|.++|.++++.|.. ..+|+.++. +++|++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~-------------~~~l~s~s~---------------------------------D~~v~~ 44 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQ-------------PNLLLSASR---------------------------------DKTLIS 44 (319)
T ss_dssp EEECCCSSCEEEEEECSSC-------------TTEEEEEET---------------------------------TSEEEE
T ss_pred EEEccccceEEEEEccCCC-------------ccEEEEecC---------------------------------CccEEE
Confidence 3456799999999998631 125554442 278999
Q ss_pred EECCC-----CcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 122 YSLRS-----QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 122 WDL~T-----g~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
||+.+ +..+++++ +...|.+++|+ +++|++ +.+++|++||+.++++++++..|... .
T Consensus 45 W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--------------v 110 (319)
T 3frx_A 45 WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--------------V 110 (319)
T ss_dssp EEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--------------E
T ss_pred ecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc--------------E
Confidence 99864 34566676 46699999997 566665 66899999999999998888776421 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
. .|++.. ++.
T Consensus 111 ~-----~~~~~~---------------------------~~~-------------------------------------- 120 (319)
T 3frx_A 111 M-----SVDIDK---------------------------KAS-------------------------------------- 120 (319)
T ss_dssp E-----EEEECT---------------------------TSC--------------------------------------
T ss_pred E-----EEEEcC---------------------------CCC--------------------------------------
Confidence 1 122321 000
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC------CCEEEEEecCCCEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------GILLVTASVQGHNI 346 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd------G~lLATaS~DGt~I 346 (828)
.+++++.||.|+|||+. ++++..+.+|...|.+++|+|. +.+|++++.||+ |
T Consensus 121 --------------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~-i 178 (319)
T 3frx_A 121 --------------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM-V 178 (319)
T ss_dssp --------------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC-E
T ss_pred --------------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE-E
Confidence 12345678999999996 5678899999999999999994 559999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 347 ~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
++||+... .....+ .++. ..|.+++|+||+++||+++.||+|+|||+........+..
T Consensus 179 ~~wd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 179 KAWNLNQF--------------QIEADF-IGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp EEEETTTT--------------EEEEEE-CCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred EEEECCcc--------------hhheee-cCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99999875 334444 3554 4599999999999999999999999999987654445543
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.3e-19 Score=190.76 Aligned_cols=274 Identities=12% Similarity=0.103 Sum_probs=169.7
Q ss_pred EEEEEc-cCCeEEEEe----cCCCc-----eeEeeee----------ecCCEEEEEEecCCCCcccccCccccCCCEEEE
Q 003336 20 VLLLGY-RSGFQVWDV----EEADN-----VHDLVSR----------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVF 79 (828)
Q Consensus 20 vLl~Gy-~~G~qVWdv----~~~~~-----~~ellS~----------hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLav 79 (828)
+|+.|. ++.++|||+ ..... ....+.. |.++|.++++.|+. .+|++
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~ 125 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG--------------NSIVT 125 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS--------------SEEEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC--------------CEEEE
Confidence 555554 556999999 65321 2333333 57799999998753 25555
Q ss_pred EeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCC
Q 003336 80 CADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAA 155 (828)
Q Consensus 80 v~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~ 155 (828)
++. .++|++|| .+++.+..+. +...|.+++|+ +++|++ +.++
T Consensus 126 ~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (425)
T 1r5m_A 126 GVE---------------------------------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171 (425)
T ss_dssp EET---------------------------------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred EeC---------------------------------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCC
Confidence 442 16799999 7888888887 46799999996 555655 6678
Q ss_pred EEEEEECCCCceEEEEEcCCCccCCC---CCCCCCcccceeeecc-ceEEEeCCCceecCCCccCCcccccccccccccC
Q 003336 156 QVHCFDAATLEIEYAILTNPIVMGHP---SAGGIGIGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 231 (828)
Q Consensus 156 ~I~IwDl~t~~~l~tL~t~p~~~~~p---~~~~~~~~~~piAlg~-r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s 231 (828)
.|++||+.+++.+..+..+....... ...+.......+++.+ ..++.+.
T Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 224 (425)
T 1r5m_A 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG--------------------------- 224 (425)
T ss_dssp CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEEC---------------------------
T ss_pred eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc---------------------------
Confidence 99999999999888876543210000 0000000001111111 1111111
Q ss_pred CCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCccc-c-cCCCCCCCccCCcccccCCCCeEEEEECC
Q 003336 232 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIV 309 (828)
Q Consensus 232 ~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~s-a-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~ 309 (828)
....+..|.....+.+. .+. .....+.. + +++ + ..++.+..+|.|+|||+.
T Consensus 225 ~~g~i~~~d~~~~~~~~------------~~~--------~~~~~i~~~~~~~~----~---~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTG------------KLI--------GHHGPISVLEFNDT----N---KLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp GGGCEEEEETTCSSCSE------------EEC--------CCSSCEEEEEEETT----T---TEEEEEETTSCEEEECSS
T ss_pred CCCeEEEEEcCCCceee------------eec--------cCCCceEEEEECCC----C---CEEEEEcCCCEEEEEECC
Confidence 01111111111111000 000 00000100 0 111 1 135667789999999999
Q ss_pred CCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEc
Q 003336 310 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (828)
Q Consensus 310 s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 389 (828)
+++.+..+..|..+|.+++|+|+| +|++++.||+ |+|||+..+ ..+..+. ++. ..|.+++|+
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~~~-~~i~~~~~s 339 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQN--------------TLLALSI-VDG-VPIFAGRIS 339 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTT--------------EEEEEEE-CTT-CCEEEEEEC
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCC--------------cEeEecc-cCC-ccEEEEEEc
Confidence 999999999999999999999999 9999999997 899999875 3444543 332 359999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCC
Q 003336 390 DDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 390 pDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
||+++||+++.||+|+||++....
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999997643
No 57
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.85 E-value=2.5e-19 Score=192.33 Aligned_cols=223 Identities=12% Similarity=0.233 Sum_probs=152.7
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~ 98 (828)
.++..+.++.++|||+.. +.....+..|.++|.++++.|+. .+|+.++. |
T Consensus 90 ~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~--------------~~l~s~~~----------d----- 139 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDN--------------RQILSAGA----------E----- 139 (343)
T ss_dssp EEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSST--------------TEEEEEET----------T-----
T ss_pred EEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCC--------------CEEEEEcC----------C-----
Confidence 345555667799999987 45666677799999999998853 24554442 1
Q ss_pred cCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe----CCCCEEEEEEcC------------CEEEE-EeCCEEEEEE
Q 003336 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK----FRSPIYSVRCSS------------RVVAI-CQAAQVHCFD 161 (828)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~----f~s~V~sV~~S~------------riLAV-s~~~~I~IwD 161 (828)
++|++||+... ....+. +...|.+++|++ .+|++ +.+++|++||
T Consensus 140 ------------------~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 140 ------------------REIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp ------------------SCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred ------------------CEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 67999999844 343332 456899999973 35554 6789999999
Q ss_pred CCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeec
Q 003336 162 AATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK 241 (828)
Q Consensus 162 l~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~ 241 (828)
.+.+...++..|... + .-|+|.. +|.
T Consensus 201 -~~~~~~~~~~~h~~~---------------v----~~~~~s~---------------------------~g~------- 226 (343)
T 2xzm_R 201 -TNFQIRYTFKAHESN---------------V----NHLSISP---------------------------NGK------- 226 (343)
T ss_dssp -TTTEEEEEEECCSSC---------------E----EEEEECT---------------------------TSS-------
T ss_pred -CCCceeEEEcCcccc---------------c----eEEEECC---------------------------CCC-------
Confidence 456666666655321 1 1123321 111
Q ss_pred ccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccC
Q 003336 242 ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAH 320 (828)
Q Consensus 242 ~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~~~i~~f~aH 320 (828)
.+++++.||.|+|||+.+ ..+...+ .|
T Consensus 227 ---------------------------------------------------~l~sgs~dg~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 2xzm_R 227 ---------------------------------------------------YIATGGKDKKLLIWDILNLTYPQREF-DA 254 (343)
T ss_dssp ---------------------------------------------------EEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred ---------------------------------------------------EEEEEcCCCeEEEEECCCCcccceee-cC
Confidence 123456789999999954 4444444 35
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe----------cCCccccEEEEEEcc
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----------RGLTNAVIQDISFSD 390 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~----------RG~t~a~I~sIaFSp 390 (828)
..+|.+|+|+|++++|++++ |+. |+|||+.+... ..+..+. +++. ..|.+++|+|
T Consensus 255 ~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp 319 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQSK------------APVCTIEAEPITKAEGQKGKN-PQCTSLAWNA 319 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSCCS------------CSEEECCCCSGGGBTTBCCSC-CCEEEEEECS
T ss_pred CCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCCCC------------CceEEeecCcchhhhhhcCCC-CceEEEEECC
Confidence 56799999999999888665 556 89999987511 1112221 2333 3599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 003336 391 DSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 391 Dg~~LAs~S~DGTVhIwdl~~ 411 (828)
||++||+++.||+|+||++.+
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEc
Confidence 999999999999999999864
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.5e-19 Score=190.78 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=85.3
Q ss_pred cccCCCCeEEEEECCC----CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 295 PDADNVGMVIVRDIVS----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s----~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
++++.||.|+|||+.. .+++..+.+|..+|.+|+|+|+|.+||||+.||+ |+|||+..+ ....
T Consensus 123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~------------~~~~ 189 (330)
T 2hes_X 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYDD------------DWEC 189 (330)
T ss_dssp EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEETT------------EEEE
T ss_pred EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCC------------CeeE
Confidence 4556789999999943 3578889999999999999999999999999998 899998653 1234
Q ss_pred EEEEecCCccccEEEEEEccC--CCEEEEEeCCCcEEEEecCC
Q 003336 371 LYRLQRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 371 l~~L~RG~t~a~I~sIaFSpD--g~~LAs~S~DGTVhIwdl~~ 411 (828)
+..+ +|+. ..|++++|+|+ +.+|++++.|++|+||++..
T Consensus 190 ~~~~-~~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 190 VAVL-NGHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEE-CCCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEc-cCCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 4555 4654 45999999999 78999999999999999965
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.85 E-value=4.6e-19 Score=208.71 Aligned_cols=237 Identities=14% Similarity=0.230 Sum_probs=168.6
Q ss_pred cEEEEEccCCeEEEEecCCC----ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 19 RVLLLGYRSGFQVWDVEEAD----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~----~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.++..+.++.++|||+.... .....+..|.+.|.++++.|+. .+|+.++.
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--------------~~l~sgs~------------ 450 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--------------QFALSGSW------------ 450 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET------------
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--------------CEEEEEeC------------
Confidence 34455566679999997632 2345677899999999998753 24554432
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEE-EEeCCEEEEEECCCCceEEE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLA-Vs~~~~I~IwDl~t~~~l~t 170 (828)
+++|+|||+.++++++.+. +...|.+|+|+ ++.|+ .+.+++|+|||+... +..+
T Consensus 451 ---------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~ 508 (694)
T 3dm0_A 451 ---------------------DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYT 508 (694)
T ss_dssp ---------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEE
T ss_pred ---------------------CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-ccee
Confidence 2789999999999999886 46799999997 44454 577899999998643 3333
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+..... +. ...+ ..++|..
T Consensus 509 ~~~~~~--~h---------~~~v----~~~~~~~---------------------------------------------- 527 (694)
T 3dm0_A 509 ISEGGE--GH---------RDWV----SCVRFSP---------------------------------------------- 527 (694)
T ss_dssp ECSSTT--SC---------SSCE----EEEEECS----------------------------------------------
T ss_pred eccCCC--CC---------CCcE----EEEEEeC----------------------------------------------
Confidence 321100 00 0000 1122211
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
++. ...+++++.||.|+|||+.+++++..+.+|..+|.+|+|+
T Consensus 528 ---------------------~~~----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 528 ---------------------NTL----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp ---------------------CSS----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred ---------------------CCC----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 000 0023455678999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 331 PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
|+|++|+|++.||+ |+|||+.++ ..++.+.. ...|.+++|+||+.+|++++ |+.|+|||+.
T Consensus 571 pdg~~l~sg~~Dg~-i~iwd~~~~--------------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 571 PDGSLCASGGKDGV-VLLWDLAEG--------------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp TTSSEEEEEETTSB-CEEEETTTT--------------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred CCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 99999999999998 899999876 45555532 23599999999999998876 4569999998
Q ss_pred CCCCceeecc
Q 003336 411 PLGGSVNFQP 420 (828)
Q Consensus 411 ~~gg~~~~~~ 420 (828)
.......+..
T Consensus 632 ~~~~~~~~~~ 641 (694)
T 3dm0_A 632 SKSIVEDLKV 641 (694)
T ss_dssp TTEEEEEECC
T ss_pred CCCChhhhcc
Confidence 7644444443
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.7e-20 Score=202.66 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=165.3
Q ss_pred CcEEEEE-ccCCeEEEEecC---CCceeEeee-eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLG-YRSGFQVWDVEE---ADNVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~---~~~~~ellS-~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
..+|+.| .++.++|||+.. .......+. .|.++|.++++.|+. .+|+.++.
T Consensus 76 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~---------- 131 (437)
T 3gre_A 76 TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF--------------DAFAVSSK---------- 131 (437)
T ss_dssp SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS--------------SEEEEEET----------
T ss_pred CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC--------------CEEEEEeC----------
Confidence 3445544 555699999975 221211222 589999999998742 25555542
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECC---CCcEEEEEe-------------CCCCEEEEEEc----CCEEEE-
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLR---SQSYVHMLK-------------FRSPIYSVRCS----SRVVAI- 151 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~---Tg~~V~tL~-------------f~s~V~sV~~S----~riLAV- 151 (828)
| ++|++||+. +++.+..+. ....+.++.+. +++|++
T Consensus 132 d-----------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 132 D-----------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp T-----------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred C-----------------------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 1 789999994 666655443 23355565532 556665
Q ss_pred EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccC
Q 003336 152 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 231 (828)
Q Consensus 152 s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s 231 (828)
+.++.|++||+.+++++.++..++.. .++ .-|++..
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~-------------~~v----~~~~~s~--------------------------- 224 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRH-------------GAV----SSICIDE--------------------------- 224 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGG-------------CCE----EEEEECT---------------------------
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCC-------------Cce----EEEEECC---------------------------
Confidence 56789999999999999888762100 001 1123321
Q ss_pred CCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC
Q 003336 232 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK 311 (828)
Q Consensus 232 ~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~ 311 (828)
++. .++++..+|.|+|||+.++
T Consensus 225 ~~~----------------------------------------------------------~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 225 ECC----------------------------------------------------------VLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp TSC----------------------------------------------------------EEEEEETTSCEEEEETTTT
T ss_pred CCC----------------------------------------------------------EEEEEcCCCeEEEEEcCCc
Confidence 000 1234557899999999999
Q ss_pred cEEEEec-cCCCCeEEEE----EcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-----------
Q 003336 312 NVIAQFR-AHKSPISALC----FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----------- 375 (828)
Q Consensus 312 ~~i~~f~-aH~~pIsaLa----FSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~----------- 375 (828)
+++..+. .|..+|.+|+ |+|+|.+|++++.||+ |+|||+..+ ..+..+.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKG--------------HCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTT--------------EEEEEEESSSSCCCGGGG
T ss_pred cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCC--------------cEEEEEEcCCCCCcccee
Confidence 9999987 8888999995 5567999999999997 899999876 2233332
Q ss_pred ------------cC-CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 376 ------------RG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 376 ------------RG-~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
.| .....|.+++|+ ++++|++++.||+|+|||+........+.+|..
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 371 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR 371 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred cccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence 11 022348999999 889999999999999999998777777877754
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.85 E-value=4.3e-19 Score=191.48 Aligned_cols=266 Identities=12% Similarity=0.071 Sum_probs=166.8
Q ss_pred cEEEEEccCCeEEEEecCCCceeEeee--eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS--~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+++.+.++.++|||+... .....+. .|.+.|.++++.|.. ..+|+.++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~-------------- 139 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFN-------------TNQLFVSSI-------------- 139 (383)
T ss_dssp EEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETTE-------------EEEEEEEET--------------
T ss_pred EEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCC-------------CCEEEEEeC--------------
Confidence 4444445566999999873 4545554 489999999998721 124554442
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC----CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF----RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f----~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~ 169 (828)
+++|++||+++ +.+..+.. ...|.+++|+ +++|++ +.++.|++||+ +++.+.
T Consensus 140 -------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 140 -------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp -------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred -------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 17899999996 55666543 3679999997 566666 56789999999 577888
Q ss_pred EEEcCCCccCCCCCCCCCcccceeeecc--c-eEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 170 AILTNPIVMGHPSAGGIGIGYGPLAVGP--R-WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 170 tL~t~p~~~~~p~~~~~~~~~~piAlg~--r-~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
++..|... +..+++++ + +|+.++. +..+.-|.....+.
T Consensus 199 ~~~~h~~~------------v~~~~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 199 KEKLHKAK------------VTHAEFNPRCDWLMATSSV---------------------------DATVKLWDLRNIKD 239 (383)
T ss_dssp EEECSSSC------------EEEEEECSSCTTEEEEEET---------------------------TSEEEEEEGGGCCS
T ss_pred EeccCCCc------------EEEEEECCCCCCEEEEEeC---------------------------CCEEEEEeCCCCCc
Confidence 88776421 22344444 2 4444321 12222222222100
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-----
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----- 321 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~----- 321 (828)
...-+..++... .+. +-.+.|. + | ..++++..+|.|+|||+.+++.+..+..|.
T Consensus 240 ~~~~~~~~~~~~--~v~--~~~~s~~----------~----~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 240 KNSYIAEMPHEK--PVN--AAYFNPT----------D----S---TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp TTCEEEEEECSS--CEE--EEEECTT----------T----S---CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred ccceEEEecCCC--ceE--EEEEcCC----------C----C---CEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 000001111110 000 0000110 1 1 135667789999999999988877777653
Q ss_pred ------------CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEc
Q 003336 322 ------------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (828)
Q Consensus 322 ------------~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 389 (828)
..+.+++|+|||++ +++.||+ |+|||+.++ ..+..+........+..++|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~s 361 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSG--------------GLVHQLRDPNAAGIISLNKFS 361 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTC--------------CEEEEECBTTBCSCCCEEEEC
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCC--------------ceeeeecCCCCCceEEEEEEe
Confidence 34555778888877 8889998 899999876 355666432223457778999
Q ss_pred cCCCEEEEEeCCCcEEEEecCC
Q 003336 390 DDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 390 pDg~~LAs~S~DGTVhIwdl~~ 411 (828)
||+++||+++ ||+|+||+++.
T Consensus 362 ~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 362 PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTSSEEEEEE-TTEEEEEECC-
T ss_pred cCccEEEEec-CCcEEEEecCC
Confidence 9999999997 99999999974
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.85 E-value=4.1e-19 Score=188.67 Aligned_cols=229 Identities=10% Similarity=0.110 Sum_probs=164.9
Q ss_pred CcEEEEE-ccCCeEEEEecCCCc--eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLG-YRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~--~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.++|+.| .++.++|||++. ++ ....+..|.++|.++++.|+. .+|+.++. |
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~~~~~----------d- 73 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS--------------NRIVTCGT----------D- 73 (372)
T ss_dssp SSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT--------------TEEEEEET----------T-
T ss_pred CCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC--------------CEEEEEcC----------C-
Confidence 4566666 666799999987 44 555666799999999998853 25554442 1
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~---f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l 168 (828)
++|++||+.+++....+. +...|.+++|+ +++|++ +.++.|++||+.+.+..
T Consensus 74 ----------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 74 ----------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp ----------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred ----------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 679999999998777664 46789999996 567776 55789999999887642
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
..+...... . ..++ ..|+|.. ++.
T Consensus 132 ~~~~~~~~~--~---------~~~i----~~~~~~~---------------------------~~~-------------- 155 (372)
T 1k8k_C 132 WVCKHIKKP--I---------RSTV----LSLDWHP---------------------------NSV-------------- 155 (372)
T ss_dssp EEEEEECTT--C---------CSCE----EEEEECT---------------------------TSS--------------
T ss_pred eeeeeeecc--c---------CCCe----eEEEEcC---------------------------CCC--------------
Confidence 222111000 0 0000 1122221 000
Q ss_pred ceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEEC------------------CC
Q 003336 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI------------------VS 310 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl------------------~s 310 (828)
.++++..+|.|+|||+ .+
T Consensus 156 --------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 156 --------------------------------------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp --------------------------------------------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred --------------------------------------------EEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 1233456789999995 46
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc
Q 003336 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (828)
Q Consensus 311 ~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 390 (828)
++++..+.+|..+|.+++|+|+|++|++++.||+ |+|||+..+ ..+..+. ++ ...|.+++|+|
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~~-~~~v~~~~~~~ 254 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK--------------MAVATLA-SE-TLPLLAVTFIT 254 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT--------------TEEEEEE-CS-SCCEEEEEEEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC--------------ceeEEEc-cC-CCCeEEEEEec
Confidence 7899999999999999999999999999999997 899999875 3445553 33 24599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 003336 391 DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 391 Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
|+++|+++ .|++|+||++...
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDSA 275 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEETT
T ss_pred CCCEEEEE-eCCeEEEEEccCc
Confidence 99999988 9999999999873
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.7e-19 Score=190.17 Aligned_cols=249 Identities=17% Similarity=0.199 Sum_probs=167.1
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+++.+.++.++|||+.........+..|.++|.++.+.|.- .|.....+|+.++.
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~s~~~~~l~~~~~--------------- 137 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL--------GIGEGAPEIVTGSR--------------- 137 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG--------GCC-CCCEEEEEET---------------
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc--------ccCCCccEEEEEeC---------------
Confidence 4455555566799999997543566677899999999887521 12222345655442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCc-EEEEEeC-----CCCEEEEEE------cCCEEEEE-eCCEEEEEECCC
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLKF-----RSPIYSVRC------SSRVVAIC-QAAQVHCFDAAT 164 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~-~V~tL~f-----~s~V~sV~~------S~riLAVs-~~~~I~IwDl~t 164 (828)
+++|++||+++++ .+..+.. ...|.++.+ ++++|+++ .++.|++||+.+
T Consensus 138 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 138 ------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp ------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred ------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 1679999999987 7777754 238999984 36777764 568999999999
Q ss_pred CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003336 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (828)
Q Consensus 165 ~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ss 244 (828)
++..... .+.. ++ .-+++.. . ..++.
T Consensus 200 ~~~~~~~-~~~~---------------~v----~~~~~~~-------------~-----------~~~~~---------- 225 (357)
T 3i2n_A 200 MALRWET-NIKN---------------GV----CSLEFDR-------------K-----------DISMN---------- 225 (357)
T ss_dssp TEEEEEE-ECSS---------------CE----EEEEESC-------------S-----------SSSCC----------
T ss_pred Cceeeec-CCCC---------------ce----EEEEcCC-------------C-----------CCCCC----------
Confidence 8864442 2211 00 1122221 0 00000
Q ss_pred cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-----c
Q 003336 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-----A 319 (828)
Q Consensus 245 k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-----a 319 (828)
.++.+..+|.|+|||+.+++++..+. +
T Consensus 226 ------------------------------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 226 ------------------------------------------------KLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp ------------------------------------------------EEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred ------------------------------------------------EEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 12334568899999999877655554 9
Q ss_pred CCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCC----C-ccCCCCceeEEEEEecCCccccEEEEEEccCCC
Q 003336 320 HKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTS----S-ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (828)
Q Consensus 320 H~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~----~-~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 393 (828)
|..+|.+++|+|+|. +|++++.||. |+|||+........ + .....+....+..+. ++. ..|.+++|+||++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LST-QPISSLDWSPDKR 334 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCS-SCEEEEEECSSST
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccccccceeeccc-cCC-CCeeEEEEcCCCC
Confidence 999999999999999 8999999997 89999986411000 0 000011234555553 443 4599999999999
Q ss_pred EEE-EEeCCCcEEEEecCCC
Q 003336 394 WIM-ISSSRGTSHLFAINPL 412 (828)
Q Consensus 394 ~LA-s~S~DGTVhIwdl~~~ 412 (828)
+|+ +++.||+|+||++...
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TEEEEEETTSEEEEEEECC-
T ss_pred eEEEEecCCCcEEEEECCCc
Confidence 999 7999999999999764
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.84 E-value=1e-19 Score=197.84 Aligned_cols=242 Identities=11% Similarity=0.103 Sum_probs=150.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..++........+.|++... ....|++.|++++|.|++. +||.++.+.
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~--------------~las~s~d~------------- 64 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGA--------------LLLAASSLS------------- 64 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSC--------------EEEEEECSS-------------
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCCC--------------EEEEEcCCC-------------
Confidence 44555555666799998752 1235899999999998642 566555321
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEE-----EEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV-----HMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V-----~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~t 170 (828)
...++++|++|+..++... ....+...|.+|+|+ +++|+.+.+++|+|||+.+++.+..
T Consensus 65 --------------~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 65 --------------SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV 130 (357)
T ss_dssp --------------SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC
T ss_pred --------------CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE
Confidence 1235689999999887643 334567889999996 5677778889999999988764321
Q ss_pred E----EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 171 I----LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 171 L----~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
. ..|. +++ ..|+|.. +|
T Consensus 131 ~~~~~~~h~---------------~~V----~~v~~sp---------------------------dg------------- 151 (357)
T 4g56_B 131 NKFAKYEHD---------------DIV----KTLSVFS---------------------------DG------------- 151 (357)
T ss_dssp CCEEECCCS---------------SCE----EEEEECS---------------------------SS-------------
T ss_pred EeeccCCCC---------------CCE----EEEEECC---------------------------CC-------------
Confidence 1 1110 000 1122221 00
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsa 326 (828)
..+++++.+|.|+|||+.+++++..|++|..+|.+
T Consensus 152 ---------------------------------------------~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 152 ---------------------------------------------TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp ---------------------------------------------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ---------------------------------------------CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 01344567899999999999999999999999999
Q ss_pred EEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC-CCEEEEEeCCCcE
Q 003336 327 LCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTS 404 (828)
Q Consensus 327 LaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAs~S~DGTV 404 (828)
|+|+|++. +|++++.||+ |+|||+.++. .+..+........|.+++|+|+ +++||+++.|++|
T Consensus 187 v~~s~~~~~~~~s~~~dg~-v~~wd~~~~~--------------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGR-ILLWDTRKPK--------------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EEECTTCSSCEEEEETTSC-EEECCTTSSS--------------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred EEEccCCCceeeeeccCCc-eEEEECCCCc--------------eeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 99999985 8999999998 8999998751 1111111122345999999997 5789999999999
Q ss_pred EEEecCCCCCceeeccCCCC
Q 003336 405 HLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 405 hIwdl~~~gg~~~~~~H~~~ 424 (828)
+|||+........+.+|...
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp EEEESSCGGGCEEECCCSSC
T ss_pred eEEECCCCcEeEEEecccee
Confidence 99999887777778777654
No 65
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.84 E-value=8.8e-19 Score=198.90 Aligned_cols=305 Identities=8% Similarity=0.116 Sum_probs=187.9
Q ss_pred cEEEEEccCCeEEEEecCCCceeEee-e---eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 19 RVLLLGYRSGFQVWDVEEADNVHDLV-S---RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ell-S---~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.+++.+.++.++|||+.. +.....+ . .|.++|..+.+. ++ .+|+.++.
T Consensus 221 ~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~--------------~~l~~~~~------------ 272 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS--------------QKFATVGA------------ 272 (615)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS--------------SEEEEEET------------
T ss_pred EEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CC--------------CEEEEEcC------------
Confidence 444455566799999987 4454555 5 789999999886 32 24554442
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCC-----CCEEEEEEc-CCEEEE-EeCCEEEEEECCCCce
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-----SPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~-----s~V~sV~~S-~riLAV-s~~~~I~IwDl~t~~~ 167 (828)
+++|++||+++++.+..+... ..+.++.++ ++.+++ +.++.|++||+.+++.
T Consensus 273 ---------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 273 ---------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp ---------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred ---------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 178999999999999999876 678888884 555555 6788999999999888
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCC--ceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~--~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.++..|... +..+++ +. |+.++.. +..+....+... ....|...+....+
T Consensus 332 ~~~~~~~~~~------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~-------------~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 332 LKTISGHNKG------------ITALTV-NP-LISGSYDGRIMEWSSSSMHQD-------------HSNLIVSLDNSKAQ 384 (615)
T ss_dssp EEEECCCSSC------------EEEEET-TT-TEEEETTSCEEETTTTEEECC-------------CCSCEEEEECCSTT
T ss_pred EEEEeCCCCC------------EEEEEe-cC-cEEECCCCeEEEEEchhhcCc-------------ccCceEEEEECCCc
Confidence 8888766431 223444 43 3333221 111211100000 00111111111011
Q ss_pred ceec----eeEeccCccceeec--cccccccCCC---------------------------CCCccc-ccCCCCCCCccC
Q 003336 246 HLAA----GIVNLGDLGYKKLS--QYCSEFLPDS---------------------------QNSLQS-AIPGGKSNGTVN 291 (828)
Q Consensus 246 ~las----Gl~~lGd~g~~~ls--~y~~~~~p~~---------------------------~~si~s-a~~~~k~~g~~~ 291 (828)
.++. |...+.+....... ..+....|++ ...+.. +.. .
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 456 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--------Q 456 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--------S
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--------C
Confidence 1111 00111111000000 0000000000 000000 000 1
Q ss_pred CcccccCC-CCeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 292 GHFPDADN-VGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 292 g~~~s~~~-dG~V~IwDl~s~~~i-~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
..++.+.. +|.|++||+.+++.. ..+.+|..+|.+|+|+|+|++||+++.||. |+|||+.++ .
T Consensus 457 ~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~--------------~ 521 (615)
T 1pgu_A 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSR--------------E 521 (615)
T ss_dssp SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------E
T ss_pred CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCC--------------c
Confidence 23456667 999999999988766 778899999999999999999999999998 899999876 3
Q ss_pred EEEEEecCCccccEEEEEEcc----------CCCEEEEEeCCCcEEEEecCCC-CCceeeccCCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSD----------DSNWIMISSSRGTSHLFAINPL-GGSVNFQPTDA 423 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSp----------Dg~~LAs~S~DGTVhIwdl~~~-gg~~~~~~H~~ 423 (828)
.+..+ .+.....|.+++|+| |+++||+++.||+|+||++... .....+.+|..
T Consensus 522 ~~~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 522 VKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 585 (615)
T ss_dssp EEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred ceeEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence 44444 331235699999999 9999999999999999999886 34445666644
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=203.60 Aligned_cols=244 Identities=11% Similarity=0.076 Sum_probs=162.4
Q ss_pred CcEEEEEccCCeEEEEecCCC------ceeEe--eeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCc
Q 003336 18 RRVLLLGYRSGFQVWDVEEAD------NVHDL--VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGT 89 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~------~~~el--lS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~ 89 (828)
..+++.+.++.++|||+.... ....+ +..|.++|.++.+.|+. ..+|+.++.
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~l~~~~~------- 186 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-------------AHVFASAGS------- 186 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------------TTEEEEESS-------
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-------------CcEEEEEcC-------
Confidence 344445556669999998743 22222 24578899999998741 125554432
Q ss_pred cccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-------CCCEEEEEEcC---CEEEEEe-CC---
Q 003336 90 KVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-------RSPIYSVRCSS---RVVAICQ-AA--- 155 (828)
Q Consensus 90 ~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-------~s~V~sV~~S~---riLAVs~-~~--- 155 (828)
+++|++||+++++.+..+.. ...|.+++|++ .+|+++. ++
T Consensus 187 --------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 187 --------------------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp --------------------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred --------------------------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 16799999999999999987 56899999972 4677654 45
Q ss_pred EEEEEECCCCc-eEEEEE-cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCC
Q 003336 156 QVHCFDAATLE-IEYAIL-TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 233 (828)
Q Consensus 156 ~I~IwDl~t~~-~l~tL~-t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g 233 (828)
.|++||+.+++ .+..+. .|.. ++ .-|+|.. . ++
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~---------------~v----~~~~~s~-------------~-------------~~ 275 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQK---------------GI----LSLDWCH-------------Q-------------DE 275 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSS---------------CE----EEEEECS-------------S-------------CS
T ss_pred eEEEEeCCCCCCCcEEeecCccC---------------ce----eEEEeCC-------------C-------------CC
Confidence 99999999863 333332 2210 00 1122220 0 00
Q ss_pred cceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE
Q 003336 234 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV 313 (828)
Q Consensus 234 ~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~ 313 (828)
..+++++.+|.|+|||+.++++
T Consensus 276 ----------------------------------------------------------~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 276 ----------------------------------------------------------HLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp ----------------------------------------------------------SCEEEEESSSEEEEECSSSCCE
T ss_pred ----------------------------------------------------------CeEEEEeCCCCEEEeeCCCCcc
Confidence 0133456789999999999999
Q ss_pred EEEeccCCCCeEEEEEcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCcc---CCCCceeEEEE----------------
Q 003336 314 IAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSAC---DAGTSYVHLYR---------------- 373 (828)
Q Consensus 314 i~~f~aH~~pIsaLaFSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~---~~~~~~~~l~~---------------- 373 (828)
+..+.+|..+|.+++|+|+| .+|++++.||+ |+|||+........... ........++.
T Consensus 298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred ceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 99999999999999999999 89999999997 89999987521100000 00000000000
Q ss_pred -EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 374 -LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 374 -L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+.+ ...+.+++|||||++||+++.||+|+||++.+.
T Consensus 377 ~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 377 QAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00001 234778999999999999999999999999863
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.5e-19 Score=207.08 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=168.8
Q ss_pred EccCCeEEEEecCCCcee----EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccccc
Q 003336 24 GYRSGFQVWDVEEADNVH----DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (828)
Q Consensus 24 Gy~~G~qVWdv~~~~~~~----ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~ 99 (828)
++++.++|||++.. +.. ..+..|.+.|..+++.|.+.. .....+||.++. |
T Consensus 180 s~D~tI~iWd~~~~-~~~~~~~~~l~~~~~~V~~v~wsp~~~~--------~~~~~~LAs~s~----------D------ 234 (524)
T 2j04_B 180 KHSSCIQIFKMNTS-TLHCVKVQTIVHSFGEVWDLKWHEGCHA--------PHLVGCLSFVSQ----------E------ 234 (524)
T ss_dssp --CEEEEEEEEETT-TCCEEEEEEEEECCCSEEEEEECSSCCC--------SSSSCEEEEEET----------T------
T ss_pred CCCceEEEEEccCC-CCCceEEEEEEecCCcEEEEEECCCCCC--------CCCCceEEEEec----------C------
Confidence 34556899999863 331 234556799999999985311 111236665553 1
Q ss_pred CCCCCCCCCCCCCCcCCCEEEEEECCCCcE-----------EEEEe-CCCCEEEEEEc-CCEEEE-EeCCEEEEEECCCC
Q 003336 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------VHMLK-FRSPIYSVRCS-SRVVAI-CQAAQVHCFDAATL 165 (828)
Q Consensus 100 ~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-----------V~tL~-f~s~V~sV~~S-~riLAV-s~~~~I~IwDl~t~ 165 (828)
++|+|||+.+++. ..++. +...|.+++|+ ...|++ +.+++|++||+.+.
T Consensus 235 -----------------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~ 297 (524)
T 2j04_B 235 -----------------GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP 297 (524)
T ss_dssp -----------------SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC
T ss_pred -----------------CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC
Confidence 7799999987742 12444 35689999996 455665 67899999999987
Q ss_pred c-eEEEEEcCCCccCCCCCCCCCccccee--eecc---ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeee
Q 003336 166 E-IEYAILTNPIVMGHPSAGGIGIGYGPL--AVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (828)
Q Consensus 166 ~-~l~tL~t~p~~~~~p~~~~~~~~~~pi--Alg~---r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~ 239 (828)
+ ...++..|... +..+ +.++ ++||.++ .+.+|.-|
T Consensus 298 ~~~~~~~~~H~~~------------V~sv~~~~s~~g~~~laS~S---------------------------~D~tvklW 338 (524)
T 2j04_B 298 EVPSFYDQVHDSY------------ILSVSTAYSDFEDTVVSTVA---------------------------VDGYFYIF 338 (524)
T ss_dssp SSCSEEEECSSSC------------EEEEEEECCTTSCCEEEEEE---------------------------TTSEEEEE
T ss_pred CCceEEeeccccc------------EEEEEEEcCCCCCeEEEEec---------------------------cCCeEEEE
Confidence 4 34556666321 1112 1121 2344332 23334333
Q ss_pred ecccccceeceeEeccCccceeeccccccccCCC-CCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec
Q 003336 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR 318 (828)
Q Consensus 240 A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~-~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~ 318 (828)
-....+.+.. ..++. +.. ..++ ..+|+. ..+++++.+++|+|||+.++.++.+|.
T Consensus 339 D~~~~~~~~~---~~~~~-------------~~~~v~~v-~fsp~~-------~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 339 NPKDIATTKT---TVSRF-------------RGSNLVPV-VYCPQI-------YSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp CGGGHHHHCE---EEEEC-------------SCCSCCCE-EEETTT-------TEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred ECCCCCcccc---ccccc-------------ccCcccce-EeCCCc-------CeEEEeCCCCcEEEEECcccccceeee
Confidence 3322221110 00100 000 0000 011211 135667788999999999999989999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCC--------------CCccCCCCc----------------e
Q 003336 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT--------------SSACDAGTS----------------Y 368 (828)
Q Consensus 319 aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~--------------~~~~~~~~~----------------~ 368 (828)
+|..+|.+|+|||+|++||+||.||+ |+|||+....... .-+..+.+. .
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g 473 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVND 473 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-----
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCC
Confidence 99999999999999999999999998 8999975432110 001111111 1
Q ss_pred eEEEEEecCCccccEEEEEEccCC---CEEEEEeCCCcEEEEecCC
Q 003336 369 VHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 369 ~~l~~L~RG~t~a~I~sIaFSpDg---~~LAs~S~DGTVhIwdl~~ 411 (828)
..+.++ +|+. ..|++|+|+||+ .+||+|+.||+|+||++.-
T Consensus 474 ~~~~~l-~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 474 VSKAKI-DAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeee-cCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 223344 3443 359999999995 4999999999999999853
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.84 E-value=4.6e-19 Score=193.82 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=85.7
Q ss_pred ccccCCCCeEEEEECCCCcE----EEEeccCCC------------CeEEEEEcCCCCEEEEEecCCCEEEEEeCCC-CCC
Q 003336 294 FPDADNVGMVIVRDIVSKNV----IAQFRAHKS------------PISALCFDPSGILLVTASVQGHNINIFKIIP-GIL 356 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~----i~~f~aH~~------------pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~-~~~ 356 (828)
++++..+|.|+|||+.+++. +..|..|.. +|.+|+|+|+|++|++++. |+ |+|||+.. +
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~-- 317 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMEN-- 317 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCS--
T ss_pred EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCc--
Confidence 34556789999999999887 789999986 9999999999999999998 76 89999986 3
Q ss_pred CCCCccCCCCceeEEEEEecCCcc--------c---cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 357 GTSSACDAGTSYVHLYRLQRGLTN--------A---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 357 ~~~~~~~~~~~~~~l~~L~RG~t~--------a---~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
.....+..+..... . .+..++|+||+++|++++.||+|+|||+... ....+..|..
T Consensus 318 ----------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~ 384 (447)
T 3dw8_B 318 ----------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEASRE 384 (447)
T ss_dssp ----------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECCST
T ss_pred ----------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeeccc
Confidence 11111222111110 0 1345999999999999999999999999874 4556666644
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.84 E-value=1.6e-18 Score=205.06 Aligned_cols=239 Identities=14% Similarity=0.133 Sum_probs=180.0
Q ss_pred CCcEEEEEccC-CeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.+..|+.|..+ .++|||+.. +.....+..|.++|+++.+.|+. .+|++++.
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~~~~------------- 75 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD------------- 75 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCC--------------CEEEEEeC-------------
Confidence 35666666655 599999987 56667777899999999999852 35665543
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCC-ceEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL-EIEYA 170 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~-~~l~t 170 (828)
+++|++||+.+++.+.++. +...|.+++|+ ++.|++ +.++.|++||+.+. .....
T Consensus 76 --------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 76 --------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp --------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred --------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 1789999999999999998 56799999997 556665 56789999999987 45555
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+..|... + ..++|... ++.
T Consensus 136 ~~~~~~~---------------v----~~~~~~p~--------------------------~~~---------------- 154 (814)
T 3mkq_A 136 FEGHEHF---------------V----MCVAFNPK--------------------------DPS---------------- 154 (814)
T ss_dssp EECCSSC---------------E----EEEEEETT--------------------------EEE----------------
T ss_pred EcCCCCc---------------E----EEEEEEcC--------------------------CCC----------------
Confidence 5554210 1 11233210 000
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEE
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCF 329 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~-~pIsaLaF 329 (828)
.++++..+|.|++||+.+++....+..|. .+|.+++|
T Consensus 155 ------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (814)
T 3mkq_A 155 ------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (814)
T ss_dssp ------------------------------------------EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEE
T ss_pred ------------------------------------------EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEE
Confidence 12234567899999999988888887665 89999999
Q ss_pred cC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003336 330 DP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (828)
Q Consensus 330 SP--dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIw 407 (828)
+| +|.+|++++.||+ |++||+..+ ..+..+ +++. ..|.+++|+||+++|++++.||+|+||
T Consensus 193 ~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLT-IKIWDYQTK--------------SCVATL-EGHM-SNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp CCSTTCCEEEEECTTSE-EEEEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99 9999999999997 899999875 344455 3443 459999999999999999999999999
Q ss_pred ecCCCCCceeeccCCC
Q 003336 408 AINPLGGSVNFQPTDA 423 (828)
Q Consensus 408 dl~~~gg~~~~~~H~~ 423 (828)
|+.+......+..|..
T Consensus 256 d~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 256 NSSTYKVEKTLNVGLE 271 (814)
T ss_dssp ETTTCSEEEEECCSSS
T ss_pred ECCCCcEEEEeecCCC
Confidence 9998766667766644
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7e-20 Score=198.05 Aligned_cols=239 Identities=10% Similarity=0.119 Sum_probs=168.5
Q ss_pred CcEEEEE-ccCCeEEEEecCC---CceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 18 RRVLLLG-YRSGFQVWDVEEA---DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~---~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
..+|+.| .++.++|||+... ......+..|.++|.++++.|+. ..+|+.++.
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~----------- 134 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-------------DNVLASGGN----------- 134 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-------------TTBEEEECS-----------
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-------------CCEEEEEcC-----------
Confidence 4445554 5667999999862 23555666799999999998741 124544432
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc------EEEEE----eCCCCEEEEEEc---CCEEEE-EeCCEEEE
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS------YVHML----KFRSPIYSVRCS---SRVVAI-CQAAQVHC 159 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~------~V~tL----~f~s~V~sV~~S---~riLAV-s~~~~I~I 159 (828)
+++|++||+++++ ....+ .+...|.+++|+ +++|++ +.++.|++
T Consensus 135 ----------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 135 ----------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp ----------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ----------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 1679999999987 44333 346789999997 356666 46789999
Q ss_pred EECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeee
Q 003336 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (828)
Q Consensus 160 wDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~ 239 (828)
||+.+++.+.++..+....+. ..++ ..+++.. ++..
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~---------~~~v----~~~~~~~---------------------------~~~~---- 228 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGI---------KQQL----SVVEWHP---------------------------KNST---- 228 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCC---------CCCE----EEEEECS---------------------------SCTT----
T ss_pred EECCCCCcceEEecccccccc---------CCce----EEEEECC---------------------------CCCC----
Confidence 999999888777553210000 0000 1122321 0000
Q ss_pred ecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCC---eEEEEECCCC-cEEE
Q 003336 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG---MVIVRDIVSK-NVIA 315 (828)
Q Consensus 240 A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG---~V~IwDl~s~-~~i~ 315 (828)
.++.+..+| .|+|||+.++ +++.
T Consensus 229 -----------------------------------------------------~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 229 -----------------------------------------------------RVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp -----------------------------------------------------EEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred -----------------------------------------------------EEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 112223444 8999999986 6788
Q ss_pred Eec-cCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC-
Q 003336 316 QFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS- 392 (828)
Q Consensus 316 ~f~-aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg- 392 (828)
.+. +|..+|.+++|+| ++++|++++.||+ |+|||+.++ ..+..+. ++. ..|.+++|+||+
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~--------------~~~~~~~-~~~-~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA--------------EQLSQFP-ARG-NWCFKTKFAPEAP 318 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC--------------CEEEEEE-CSS-SCCCCEEECTTCT
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC--------------ccceeec-CCC-CceEEEEECCCCC
Confidence 888 9999999999999 9999999999997 899999875 3455553 443 359999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCce
Q 003336 393 NWIMISSSRGTSHLFAINPLGGSV 416 (828)
Q Consensus 393 ~~LAs~S~DGTVhIwdl~~~gg~~ 416 (828)
++|++++.||+|+||++.......
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSS
T ss_pred CEEEEEecCCcEEEEEccCCCCCc
Confidence 899999999999999998765443
No 71
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=6.6e-19 Score=193.54 Aligned_cols=187 Identities=9% Similarity=0.020 Sum_probs=125.7
Q ss_pred CCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc-----CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCC
Q 003336 116 PTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS-----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 187 (828)
Q Consensus 116 ~~tVrlWDL-~Tg~~V~tL~f-~s~V~sV~~S-----~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~ 187 (828)
..+|++|++ .+|+.+.++.. +..+..++|+ +.+||. +.|++|+|||+.|+++++++.++.....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-------- 227 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-------- 227 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--------
Confidence 589999999 55888887765 4455555554 477776 6789999999999999999986532100
Q ss_pred cccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccc
Q 003336 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (828)
Q Consensus 188 ~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~ 267 (828)
+-.-+||++ +|.++ +.+. +
T Consensus 228 --------~v~~vafSp---------------------------dG~~l-----------vs~s----~----------- 246 (356)
T 2w18_A 228 --------SVCHKAYSE---------------------------MGLLF-----------IVLS----H----------- 246 (356)
T ss_dssp --------CCEEEEEEE---------------------------TTEEE-----------EEEC----------------
T ss_pred --------eeEEEEECC---------------------------CCCEE-----------EEec----c-----------
Confidence 011234442 11111 0000 0
Q ss_pred cccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-----ccCCCCeEEEEEcCCCCEEEEEecC
Q 003336 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RAHKSPISALCFDPSGILLVTASVQ 342 (828)
Q Consensus 268 ~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f-----~aH~~pIsaLaFSPdG~lLATaS~D 342 (828)
+. + .-.+++++.|++|++||..+++.+..+ .+|...+.+..| +|.++|+++.|
T Consensus 247 ---~~---------------~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D 304 (356)
T 2w18_A 247 ---PC---------------A--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS 304 (356)
T ss_dssp -------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT
T ss_pred ---CC---------------C--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC
Confidence 00 0 001345678999999999999988776 477766554444 49999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 343 Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
|+ |+|||+.++ +.+.+| +|+....+..++|||||++||+||.|+||+|||+
T Consensus 305 gT-IkIWDl~tG--------------k~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 305 GT-IAIWDLLLG--------------QCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SC-EEEEETTTC--------------SEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred Cc-EEEEECCCC--------------cEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 98 899999987 456677 3555444557999999999999999999999996
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.83 E-value=8e-19 Score=206.64 Aligned_cols=225 Identities=16% Similarity=0.237 Sum_probs=157.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.++..+.++.++|||+.. +.....+..|.+.|.++++.|+. .+|+.++. |
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~----------D---- 493 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDN--------------RQIVSASR----------D---- 493 (694)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS--------------SCEEEEET----------T----
T ss_pred CEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCC--------------CEEEEEeC----------C----
Confidence 3444555566799999987 55666677899999999998753 13443432 1
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe-----CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCce
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-----f~s~V~sV~~S~----riLAV-s~~~~I~IwDl~t~~~ 167 (828)
++|++||+..... ..+. +...|.+++|+. .+|++ +.+++|+|||+.+.++
T Consensus 494 -------------------~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 494 -------------------RTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp -------------------SCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred -------------------CEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 7799999876543 3332 355799999973 34554 6788999999999998
Q ss_pred EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003336 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (828)
Q Consensus 168 l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~l 247 (828)
..++..|... + ..|+++. +|.
T Consensus 554 ~~~~~~h~~~---------------v----~~v~~sp---------------------------dg~------------- 574 (694)
T 3dm0_A 554 RSTLAGHTGY---------------V----STVAVSP---------------------------DGS------------- 574 (694)
T ss_dssp EEEECCCSSC---------------E----EEEEECT---------------------------TSS-------------
T ss_pred EEEEcCCCCC---------------E----EEEEEeC---------------------------CCC-------------
Confidence 8888766321 1 1123321 111
Q ss_pred eceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003336 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (828)
Q Consensus 248 asGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaL 327 (828)
.+++++.||.|+|||+.+++.+..+..| ..|.++
T Consensus 575 ---------------------------------------------~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 608 (694)
T 3dm0_A 575 ---------------------------------------------LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL 608 (694)
T ss_dssp ---------------------------------------------EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE
Confidence 1234567899999999999998888754 679999
Q ss_pred EEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC-----------------ccccEEEEEEcc
Q 003336 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------------TNAVIQDISFSD 390 (828)
Q Consensus 328 aFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~-----------------t~a~I~sIaFSp 390 (828)
+|+|++.+|++++.+ . |+|||+..+ ..+..+.... ....+.+++|||
T Consensus 609 ~~sp~~~~l~~~~~~-~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 609 CFSPNRYWLCAATEH-G-IKIWDLESK--------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EECSSSSEEEEEETT-E-EEEEETTTT--------------EEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred EEcCCCcEEEEEcCC-C-EEEEECCCC--------------CChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 999999999988765 3 899999875 1222221000 001278999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 003336 391 DSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 391 Dg~~LAs~S~DGTVhIwdl~~~ 412 (828)
||++|++++.||+|+||++..+
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC---
T ss_pred CCCEEEEEcCCCeEEEEeccCC
Confidence 9999999999999999999753
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=1.3e-18 Score=197.40 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=177.3
Q ss_pred CCcEEEEEccCCeEEEEecCCC---ceeEeeeeecCC-EEEEEEec--CCCCcccccCccccCCCEEEEEeCCCCccCcc
Q 003336 17 TRRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGP-VSFMQMLP--RPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (828)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~---~~~ellS~hdG~-V~~v~~lP--~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~ 90 (828)
..+.|+.|.++.++|||+++.. .....+..|.++ |.++++.| ++ .+|+.++.
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~--------------~~l~s~~~-------- 86 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS--------------QYLCSGDE-------- 86 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC--------------CEEEEEET--------
T ss_pred CCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC--------------CEEEEecC--------
Confidence 4678888888889999998631 466667779999 99999988 53 25655542
Q ss_pred ccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCC--------cEEEEEe-CCCCEEEEEEc--CCEEEEEeC-----
Q 003336 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--------SYVHMLK-FRSPIYSVRCS--SRVVAICQA----- 154 (828)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg--------~~V~tL~-f~s~V~sV~~S--~riLAVs~~----- 154 (828)
+++|++||+.++ +.+..+. +..+|.+++|+ +++|+++..
T Consensus 87 -------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 141 (615)
T 1pgu_A 87 -------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 141 (615)
T ss_dssp -------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred -------------------------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence 178999999865 6677776 47799999997 567777554
Q ss_pred CEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCc
Q 003336 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (828)
Q Consensus 155 ~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~ 234 (828)
..|++|| +.+.+.++..|... + ..++|.. ++.
T Consensus 142 ~~v~~~d--~~~~~~~~~~~~~~---------------v----~~~~~~~---------------------------~~~ 173 (615)
T 1pgu_A 142 GVFISWD--SGNSLGEVSGHSQR---------------I----NACHLKQ---------------------------SRP 173 (615)
T ss_dssp EEEEETT--TCCEEEECCSCSSC---------------E----EEEEECS---------------------------SSS
T ss_pred cEEEEEE--CCCcceeeecCCcc---------------E----EEEEECC---------------------------CCC
Confidence 4888888 55666665544210 1 1122321 000
Q ss_pred ceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEE
Q 003336 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (828)
Q Consensus 235 ~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i 314 (828)
..++++..+|.|+|||+.+++.+
T Consensus 174 ---------------------------------------------------------~~l~~~~~d~~v~vwd~~~~~~~ 196 (615)
T 1pgu_A 174 ---------------------------------------------------------MRSMTVGDDGSVVFYQGPPFKFS 196 (615)
T ss_dssp ---------------------------------------------------------CEEEEEETTTEEEEEETTTBEEE
T ss_pred ---------------------------------------------------------cEEEEEeCCCcEEEEeCCCccee
Confidence 01234457899999999999999
Q ss_pred EEeccCCC---CeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec---CCccccEEEEE
Q 003336 315 AQFRAHKS---PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDIS 387 (828)
Q Consensus 315 ~~f~aH~~---pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R---G~t~a~I~sIa 387 (828)
..+.+|.. +|.+++|+|+ |++|++++.||+ |+|||+.++ ..+..+.. ++. ..|.+++
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~~~-~~v~~~~ 260 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIEDDQEPVQ-GGIFALS 260 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTC--------------CEEEECCBTTBCCC-SCEEEEE
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCC--------------CEeEEecccccccC-CceEEEE
Confidence 99999999 9999999999 999999999998 899999875 34555533 443 4599999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 388 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 388 FSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
|+ |+++|++++.||+|+|||+........+..|
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 99 9999999999999999999876555566655
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.83 E-value=2.4e-18 Score=190.45 Aligned_cols=225 Identities=13% Similarity=0.196 Sum_probs=168.0
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+++.+.++.++|||+.. +.....+..|.++|.++++.|.+. ..+|+.++. |
T Consensus 174 ~~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~------------~~~l~s~s~----------d---- 226 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKN------------IKYIVTGSR----------D---- 226 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEEESSS------------CEEEEEEET----------T----
T ss_pred CEEEEEeCCCCEEEEECCC-CcEEEEECCCCCccEEEEEecCCC------------CCEEEEEcC----------C----
Confidence 3566666677799999987 566677778999999999987431 124544442 1
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcE-----------------------EEEEe-CCCCEEEEEEcCCEEEE-E
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------------------VHMLK-FRSPIYSVRCSSRVVAI-C 152 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-----------------------V~tL~-f~s~V~sV~~S~riLAV-s 152 (828)
++|++||+++++. +..+. +...|.++..++++|++ +
T Consensus 227 -------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 227 -------------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp -------------------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred -------------------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 6799999998763 33343 35688888888887776 5
Q ss_pred eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCC
Q 003336 153 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (828)
Q Consensus 153 ~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~ 232 (828)
.++.|++||+.+++++.++..|... + .-++|.. +
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~---------------v----~~~~~~~---------------------------~ 321 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDR---------------I----YSTIYDH---------------------------E 321 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSC---------------E----EEEEEET---------------------------T
T ss_pred CCCeEEEEECCCCcEEEEecCCCCC---------------E----EEEEEcC---------------------------C
Confidence 6889999999999988888665311 1 1123321 0
Q ss_pred CcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc
Q 003336 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN 312 (828)
Q Consensus 233 g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~ 312 (828)
+. .+++++.+|.|+|||+.+++
T Consensus 322 ~~----------------------------------------------------------~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 322 RK----------------------------------------------------------RCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp TT----------------------------------------------------------EEEEEETTSCEEEEETTTTE
T ss_pred CC----------------------------------------------------------EEEEEeCCCcEEEEECCCCc
Confidence 10 12334568899999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC
Q 003336 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (828)
Q Consensus 313 ~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 392 (828)
++..+.+|..+|.+++|+ +.+|++++.||+ |+|||+... ...+.+.. ...+..++|++|+
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~--------------~~~~~~~~---~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY--------------SRKFSYHH---TNLSAITTFYVSD 403 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEC---TTCCCEEEEEECS
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC--------------ceeeeecC---CCCccEEEEEeCC
Confidence 999999999999999997 689999999997 899999875 23444432 2347789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCC
Q 003336 393 NWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 393 ~~LAs~S~DGTVhIwdl~~~g 413 (828)
++|++++ ||+|+|||+.+..
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCC
T ss_pred CEEEEec-CCeEEEEECCCCc
Confidence 9999999 8999999998753
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.83 E-value=2.3e-19 Score=192.25 Aligned_cols=227 Identities=15% Similarity=0.185 Sum_probs=166.1
Q ss_pred cCCeEEEEecCCCceeEeeeeecCCEEEEEEec-CCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCC
Q 003336 26 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSA 104 (828)
Q Consensus 26 ~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP-~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~ 104 (828)
+..++||+++. +...+++..|.++|.++++.| ++ .+|+.++. |
T Consensus 22 ~~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--------------~~l~~~~~----------d----------- 65 (408)
T 4a11_B 22 ESTRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEG--------------RYMLSGGS----------D----------- 65 (408)
T ss_dssp HHHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTC--------------CEEEEEET----------T-----------
T ss_pred cCcceeecccc-CcceeeeeccCCcEEEEEEecCCC--------------CEEEEEcC----------C-----------
Confidence 44578899887 567788888999999999988 43 25655542 1
Q ss_pred CCCCCCCCCcCCCEEEEEECCCCcEEEEEe--------------CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCc
Q 003336 105 NYHDLGNGSSVPTVVHFYSLRSQSYVHMLK--------------FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLE 166 (828)
Q Consensus 105 ~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~--------------f~s~V~sV~~S~---riLAV-s~~~~I~IwDl~t~~ 166 (828)
++|++||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.+++
T Consensus 66 ------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 133 (408)
T 4a11_B 66 ------------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133 (408)
T ss_dssp ------------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred ------------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence 679999999988766665 677999999963 45555 568899999999998
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
.+..+..... + ..+++... ..++.
T Consensus 134 ~~~~~~~~~~----------------~----~~~~~~~~------------------------~~~~~------------ 157 (408)
T 4a11_B 134 TADVFNFEET----------------V----YSHHMSPV------------------------STKHC------------ 157 (408)
T ss_dssp EEEEEECSSC----------------E----EEEEECSS------------------------CSSCC------------
T ss_pred cceeccCCCc----------------e----eeeEeecC------------------------CCCCc------------
Confidence 7777642110 0 01122100 00000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsa 326 (828)
.++.+..+|.|+|||+.+++.+..+.+|..+|.+
T Consensus 158 ----------------------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 158 ----------------------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp ----------------------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred ----------------------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 1233456789999999999999999999999999
Q ss_pred EEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe--------------cCCccccEEEEEEccC
Q 003336 327 LCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--------------RGLTNAVIQDISFSDD 391 (828)
Q Consensus 327 LaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~--------------RG~t~a~I~sIaFSpD 391 (828)
++|+|++. +|++++.||+ |+|||+..... .+..+. .++ ...|.+++|+||
T Consensus 192 ~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 256 (408)
T 4a11_B 192 VSWSPRYDYILATASADSR-VKLWDVRRASG-------------CLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSD 256 (408)
T ss_dssp EEECSSCTTEEEEEETTSC-EEEEETTCSSC-------------CSEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTT
T ss_pred EEECCCCCcEEEEEcCCCc-EEEEECCCCCc-------------ccccccccccccceeeccccccc-cCceeEEEEcCC
Confidence 99999999 6999999998 89999986510 011110 122 235999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 392 SNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 392 g~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
+++|++++.||+|+|||+........
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred CCEEEEecCCCeEEEEECCCCcccee
Confidence 99999999999999999987644333
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.83 E-value=4.5e-19 Score=196.30 Aligned_cols=227 Identities=15% Similarity=0.245 Sum_probs=162.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
..+++.+.++.++|||+.. ++....+..|.+.|.++.+.+ .+|+.++.
T Consensus 184 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~--------------- 231 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN----------------GMMVTCSK--------------- 231 (435)
T ss_dssp SEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT----------------TEEEEEET---------------
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC----------------CEEEEeeC---------------
Confidence 3444445555699999987 556666777899999888743 14554442
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEE---EEEe-CCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV---HMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V---~tL~-f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t~~~l~tL~ 172 (828)
+++|++||+++++.+ ..+. +...|.++.+++++|++ +.++.|++||+.+++.+.++.
T Consensus 232 ------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 232 ------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 167999999998766 3333 46799999999887777 567899999999999988887
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.|... +. .+++.. .
T Consensus 294 ~~~~~---------------v~----~~~~~~-----------------------------~------------------ 307 (435)
T 1p22_A 294 GHKRG---------------IA----CLQYRD-----------------------------R------------------ 307 (435)
T ss_dssp CCSSC---------------EE----EEEEET-----------------------------T------------------
T ss_pred CCCCc---------------EE----EEEeCC-----------------------------C------------------
Confidence 65321 10 111210 0
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
.+++++.+|.|+|||+.+++++..+.+|..+|.+|+| +
T Consensus 308 ----------------------------------------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 308 ----------------------------------------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp ----------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred ----------------------------------------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 1223456889999999999999999999999999999 8
Q ss_pred CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 333 G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
|.+|++|+.||+ |+|||+..+...... .....+..+ .++. ..|.+++| |+++|++++.||+|+|||+...
T Consensus 346 ~~~l~sg~~dg~-i~vwd~~~~~~~~~~-----~~~~~~~~~-~~h~-~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 346 NKRIVSGAYDGK-IKVWDLVAALDPRAP-----AGTLCLRTL-VEHS-GRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEETTSC-EEEEEHHHHTSTTSC-----TTTTEEEEE-CCCS-SCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCEEEEEeCCCc-EEEEECCCCCCcccc-----ccchheeec-cCCC-CCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999999999998 899998754110000 001144455 3444 35999999 8899999999999999999764
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=3.6e-19 Score=194.38 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=163.4
Q ss_pred EccCCeEEEEecCCCce---eEeeeeecCCEEEEEEec-CCCCcccccCccccCCCEEEEEeCCCCccCccccCCccccc
Q 003336 24 GYRSGFQVWDVEEADNV---HDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (828)
Q Consensus 24 Gy~~G~qVWdv~~~~~~---~ellS~hdG~V~~v~~lP-~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~ 99 (828)
+.++.++|||++..+.. ...+..|.++|.++++.| +. .+|+.++. |
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--------------~~l~s~s~----------d------ 103 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--------------NVIASGSE----------D------ 103 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--------------TEEEEEET----------T------
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--------------CEEEEEeC----------C------
Confidence 44566999999764432 234567999999999987 32 36665543 1
Q ss_pred CCCCCCCCCCCCCCcCCCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEc--C-CEEEE-EeCCEEEEEECCCCce
Q 003336 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 100 ~g~~~~~h~~g~~~~~~~tVrlWDL~Tg-------~~V~tL~-f~s~V~sV~~S--~-riLAV-s~~~~I~IwDl~t~~~ 167 (828)
++|++||+.++ +.+..+. +...|.+|+|+ + ++|++ +.++.|++||+.+++.
T Consensus 104 -----------------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 104 -----------------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp -----------------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred -----------------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence 78999999998 5677776 56799999997 2 46666 5678999999999998
Q ss_pred EEEE--EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 168 EYAI--LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 168 l~tL--~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.++ ..|.. ++ ..|++.. ++.
T Consensus 167 ~~~~~~~~~~~---------------~v----~~~~~~~---------------------------~~~----------- 189 (402)
T 2aq5_A 167 VLTLGPDVHPD---------------TI----YSVDWSR---------------------------DGA----------- 189 (402)
T ss_dssp EEEECTTTCCS---------------CE----EEEEECT---------------------------TSS-----------
T ss_pred cEEEecCCCCC---------------ce----EEEEECC---------------------------CCC-----------
Confidence 8887 33321 01 1122321 011
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCC-
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSP- 323 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f-~aH~~p- 323 (828)
.++++..+|.|+|||+.+++.+..+ .+|...
T Consensus 190 -----------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 190 -----------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp -----------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred -----------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 1233456899999999999999999 799876
Q ss_pred eEEEEEcCCCCEEEEE---ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE-e
Q 003336 324 ISALCFDPSGILLVTA---SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-S 399 (828)
Q Consensus 324 IsaLaFSPdG~lLATa---S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~-S 399 (828)
+.+++|+|+|++|+++ +.||+ |+|||+.... ....+..+ .+ ...|.+++|+||+++|+++ +
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~-----------~~~~~~~~--~~-~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLE-----------EPLSLQEL--DT-SSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCS-----------SCSEEEEC--CC-CSSCEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCcEEEEeccCCCCce-EEEEcCcccc-----------CCceEEec--cC-CCceeEEEEcCCCCEEEEEEc
Confidence 9999999999999999 78887 8999998751 11222232 22 2348999999999999754 5
Q ss_pred CCCcEEEEecCCCCC
Q 003336 400 SRGTSHLFAINPLGG 414 (828)
Q Consensus 400 ~DGTVhIwdl~~~gg 414 (828)
.||+|+||++.....
T Consensus 288 ~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 288 GDSSIRYFEITSEAP 302 (402)
T ss_dssp TCSCEEEEEECSSTT
T ss_pred CCCeEEEEEecCCCc
Confidence 799999999987543
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.83 E-value=1.2e-18 Score=183.50 Aligned_cols=208 Identities=13% Similarity=0.212 Sum_probs=147.9
Q ss_pred eeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEE
Q 003336 43 LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFY 122 (828)
Q Consensus 43 llS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlW 122 (828)
++..|.++|++++|.|++ .+||.++. | ++|+||
T Consensus 4 ~~~~h~~~V~~~~~s~~g--------------~~las~s~----------D-----------------------~~v~iw 36 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG--------------KRMATCSS----------D-----------------------KTIKIF 36 (297)
T ss_dssp ECCSCSSCEEEEEECTTS--------------SEEEEEET----------T-----------------------SCEEEE
T ss_pred eccCCcCceEEEEECCCC--------------CEEEEEeC----------C-----------------------CEEEEE
Confidence 455689999999998753 25554442 1 779999
Q ss_pred ECCC--CcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEEcCCCccCCCCCCCCCcccce
Q 003336 123 SLRS--QSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 123 DL~T--g~~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~--~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
|+.+ ++++.+|. +..+|.+|+|+ +++||. +.|++|++||+.+++ .+.++..|.. +
T Consensus 37 ~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~---------------~ 101 (297)
T 2pm7_B 37 EVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA---------------S 101 (297)
T ss_dssp EBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS---------------C
T ss_pred ecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC---------------c
Confidence 9974 46778886 46799999995 467776 568999999998764 3344433311 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+ +.++|.. .. .|
T Consensus 102 v----~~v~~~p-------------~~------------~g--------------------------------------- 113 (297)
T 2pm7_B 102 V----NSVQWAP-------------HE------------YG--------------------------------------- 113 (297)
T ss_dssp E----EEEEECC-------------GG------------GC---------------------------------------
T ss_pred e----eEEEeCc-------------CC------------CC---------------------------------------
Confidence 0 1122321 00 00
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC-------------CCEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS-------------GILLV 337 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSPd-------------G~lLA 337 (828)
..+++++.||.|+|||+.++. ....+.+|...|.+++|+|+ +++||
T Consensus 114 -------------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~ 174 (297)
T 2pm7_B 114 -------------------PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (297)
T ss_dssp -------------------SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred -------------------cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence 012345678999999998763 24678899999999999997 57999
Q ss_pred EEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC---CEEEEEeCCCcEEEEecCCC
Q 003336 338 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 338 TaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg---~~LAs~S~DGTVhIwdl~~~ 412 (828)
||+.||+ |+|||+..+. .....+..| ++|. ..|.+|+|+||+ ++||+++.|++|+||++...
T Consensus 175 sgs~D~~-v~lwd~~~~~----------~~~~~~~~l-~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 175 TGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEcCCCc-EEEEEEcCCC----------ceEEEEEEe-cCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999998 8999997641 011233455 4664 459999999995 89999999999999999764
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.83 E-value=5.4e-20 Score=197.38 Aligned_cols=230 Identities=14% Similarity=0.120 Sum_probs=149.6
Q ss_pred CCcEEEEE-ccCCeEEEEecCCC-ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 17 TRRVLLLG-YRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 17 ~~~vLl~G-y~~G~qVWdv~~~~-~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
..++|+.| .++.++|||+.... .....+..|.++|.++++.|+. .+|+.++. |
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~----------d- 76 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------------NRIVTCSQ----------D- 76 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--------------CCEEEEET----------T-
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--------------CEEEEEeC----------C-
Confidence 35566666 66679999998632 4555666799999999998753 24554442 1
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc---EEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI 167 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~---~V~tL-~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~ 167 (828)
++|++||+.+++ .+..+ .+...|.+++|+ +++|++ +.++.|++||+.+.+.
T Consensus 77 ----------------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 77 ----------------------RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp ----------------------SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred ----------------------CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 679999999987 34433 457799999996 455555 6688999999998763
Q ss_pred ---EEEEEc-CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc
Q 003336 168 ---EYAILT-NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (828)
Q Consensus 168 ---l~tL~t-~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~s 243 (828)
...+.. |.. ++ ..|+|.. ++.
T Consensus 135 ~~~~~~~~~~h~~---------------~v----~~~~~~~---------------------------~~~--------- 159 (377)
T 3dwl_C 135 WWVSKHLKRPLRS---------------TI----LSLDWHP---------------------------NNV--------- 159 (377)
T ss_dssp CCCCEEECSSCCS---------------CE----EEEEECT---------------------------TSS---------
T ss_pred ceeeeEeecccCC---------------Ce----EEEEEcC---------------------------CCC---------
Confidence 445443 211 00 1122221 000
Q ss_pred ccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECC--------------
Q 003336 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------------- 309 (828)
Q Consensus 244 sk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~-------------- 309 (828)
.++++..+|.|+|||+.
T Consensus 160 -------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 190 (377)
T 3dwl_C 160 -------------------------------------------------LLAAGCADRKAYVLSAYVRDVDAKPEASVWG 190 (377)
T ss_dssp -------------------------------------------------EEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred -------------------------------------------------EEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence 12334567889999984
Q ss_pred ----CCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEE
Q 003336 310 ----SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 385 (828)
Q Consensus 310 ----s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~s 385 (828)
.++++..+ .|..+|.+++|+|+|++||+++.||+ |+|||+..+.. ....+..+ .++. ..|.+
T Consensus 191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~----------~~~~~~~~-~~~~-~~v~~ 256 (377)
T 3dwl_C 191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ----------PPRALITV-KLSQ-LPLRS 256 (377)
T ss_dssp SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS----------CEEECCCE-ECSS-SCEEE
T ss_pred cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC----------cceeeEee-cCCC-CceEE
Confidence 35677778 99999999999999999999999997 89999987610 01113334 2333 35999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 386 ISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 386 IaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
++|+||+++|++++.++.+ +|+....
T Consensus 257 ~~~s~~~~~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 257 LLWANESAIVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp EEEEETTEEEEEESSSSEE-EECCCC-
T ss_pred EEEcCCCCEEEEEcCCcEE-EEEeCCC
Confidence 9999999999999877666 8887653
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.83 E-value=5.5e-19 Score=185.85 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=160.3
Q ss_pred cEEEEEccCCeEEEEecCCCc--eeEeeeeecCCEEEEEEecCCCCcccccCccccCCC-EEEEEeCCCCccCccccCCc
Q 003336 19 RVLLLGYRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP-LLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~--~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rP-LLavv~~~~~~g~~~~~Dg~ 95 (828)
.+++.+.++.++|||++.... ....+..|.++|.++++.|++ . +|+.++.
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~~~~~------------- 77 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--------------DLQIYVGTV------------- 77 (342)
T ss_dssp EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--------------SEEEEEEET-------------
T ss_pred EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC--------------CcEEEEEcC-------------
Confidence 455555666799999987431 123344789999999998852 2 4544432
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEEC-CCCcEEEEEe--CCCCEEEEEEc-CCEEEE-EeCCEEEEEECCC------
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHMLK--FRSPIYSVRCS-SRVVAI-CQAAQVHCFDAAT------ 164 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL-~Tg~~V~tL~--f~s~V~sV~~S-~riLAV-s~~~~I~IwDl~t------ 164 (828)
+++|++||+ .+++...... +...|.+++|+ +++|++ +.++.|++||+.+
T Consensus 78 --------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 78 --------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp --------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred --------------------CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccc
Confidence 167999999 9888644334 67799999997 566665 6788999999876
Q ss_pred ---CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeec
Q 003336 165 ---LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK 241 (828)
Q Consensus 165 ---~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~ 241 (828)
.+++.++. ++. .+ .-+++.
T Consensus 138 ~~~~~~~~~~~-~~~--------------~v-----~~~~~~-------------------------------------- 159 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKN--------------KI-----FTMDTN-------------------------------------- 159 (342)
T ss_dssp EEEESCSSSSS-SCC--------------CE-----EEEEEC--------------------------------------
T ss_pred cccCCeeeEEe-eCC--------------ce-----EEEEec--------------------------------------
Confidence 22211110 000 00 001111
Q ss_pred ccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-Cc--EEEEec
Q 003336 242 ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KN--VIAQFR 318 (828)
Q Consensus 242 ~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~~--~i~~f~ 318 (828)
|+ .++.+..+|.|++||+.+ +. ......
T Consensus 160 -----------------------------~~--------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 190 (342)
T 1yfq_A 160 -----------------------------SS--------------------RLIVGMNNSQVQWFRLPLCEDDNGTIEES 190 (342)
T ss_dssp -----------------------------SS--------------------EEEEEESTTEEEEEESSCCTTCCCEEEEC
T ss_pred -----------------------------CC--------------------cEEEEeCCCeEEEEECCccccccceeeec
Confidence 00 022345678999999998 54 334556
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC-----ccccEEEEEEccCC
Q 003336 319 AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----TNAVIQDISFSDDS 392 (828)
Q Consensus 319 aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~-----t~a~I~sIaFSpDg 392 (828)
.|..+|.+++|+| +|++|++++.||+ |+||++....... .......+..++.. ....|.+++|+||+
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDY------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCST------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred CCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccc------ccccceeeecccccccccccceeEEEEEEcCCC
Confidence 8889999999999 9999999999997 8999987630000 00112222222110 02359999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 393 NWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 393 ~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
++|++++.||+|+|||+........+..|
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred CEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 99999999999999999876555566665
No 81
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-19 Score=196.22 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=97.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~a--H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
++++..+|.|+|||+.+++++..+.. |..+|.+|+|+|+|++|++|+.||+ |+|||+..+ ..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFN--------------VLI 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCc--------------cEE
Confidence 44567889999999999999999998 8999999999999999999999998 899999875 455
Q ss_pred EEEecCCccccEEEEEE----ccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 372 YRLQRGLTNAVIQDISF----SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaF----SpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
..+.-++. ..|.+++| +||+++|++++.||+|+|||+........+.+|...+
T Consensus 250 ~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 250 RSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp EEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred EEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 55543333 35999955 4678999999999999999999877777888876443
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=1.3e-19 Score=225.35 Aligned_cols=244 Identities=16% Similarity=0.221 Sum_probs=177.4
Q ss_pred CcEEEEEccC-CeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
...+++|..+ .+++||+.. +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 973 g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg--------------~~l~s~~~-------------- 1023 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADG--------------KTLISSSE-------------- 1023 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSS--------------SCEEEECS--------------
T ss_pred CCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCC--------------CEEEEEcC--------------
Confidence 4556666655 499999987 45666667799999999998753 23443332
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcC
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTN 174 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~ 174 (828)
+++|++||+.+++.+....+...|.++.++ +++++++.+++|++||+.+++.+.++..|
T Consensus 1024 -------------------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A 1024 -------------------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp -------------------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred -------------------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence 167999999999998777778899999996 56666788999999999999988888765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEec
Q 003336 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (828)
Q Consensus 175 p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~l 254 (828)
... +. -++++. ++.
T Consensus 1085 ~~~------------v~-------~~~~s~---------------------------d~~-------------------- 1098 (1249)
T 3sfz_A 1085 QGT------------VL-------SCAISS---------------------------DAT-------------------- 1098 (1249)
T ss_dssp SSC------------CC-------CEEECS---------------------------SSS--------------------
T ss_pred CCc------------EE-------EEEECC---------------------------CCC--------------------
Confidence 321 00 122221 010
Q ss_pred cCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 003336 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (828)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~ 334 (828)
.+++++.+|.|+|||+.+++++..+.+|..+|++++|+|||+
T Consensus 1099 --------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1099 --------------------------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp --------------------------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred --------------------------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence 123455688999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 335 lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
+|||++.||+ |+|||+.++..-.... .... .....++. ..|.+++|||||++|++++ |+|+|||+.+...
T Consensus 1141 ~lat~~~dg~-i~vwd~~~~~~~~~~~-----~~~~-~~~~~~~~-~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1141 LLATGDDNGE-IRIWNVSDGQLLHSCA-----PISV-EEGTATHG-GWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEEEEETTSC-CCEEESSSSCCCCCCC-----CCC--------CC-SCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEEEEeCCCE-EEEEECCCCceEEEec-----cccc-cccccccC-ceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 9999999998 8999998762100000 0000 00012222 3599999999999999885 9999999988766
Q ss_pred ceeeccCCC
Q 003336 415 SVNFQPTDA 423 (828)
Q Consensus 415 ~~~~~~H~~ 423 (828)
...+..|..
T Consensus 1211 ~~~~~~~~~ 1219 (1249)
T 3sfz_A 1211 SQTFYTNGT 1219 (1249)
T ss_dssp CCCCCCSSC
T ss_pred eeeeeccCC
Confidence 666666643
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=2.5e-19 Score=198.99 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=91.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
++++.+|.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++|+.||+ |+|||+...... ..+ .
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~~-----------~~~-~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGK-----------ASF-L 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCSS-----------SCC-S
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccccc-----------ceE-E
Confidence 3456789999999864 56788999999999999999986 8899999998 899999875110 011 1
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~ 424 (828)
...++. ..|.+|+|+|||++|++++.||+|+|||+........+..|...
T Consensus 291 ~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 291 YSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340 (435)
T ss_dssp BCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred Eeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence 112333 35999999999999999999999999999988777788777543
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.7e-18 Score=191.24 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=129.3
Q ss_pred CCEEEEEECC--CCcEEEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE----EEEcCCCccCCCCC
Q 003336 116 PTVVHFYSLR--SQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY----AILTNPIVMGHPSA 183 (828)
Q Consensus 116 ~~tVrlWDL~--Tg~~V~tL~---f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~----tL~t~p~~~~~p~~ 183 (828)
+++|++||+. +++++..+. +...|.+|+|+ +++|++ +.++.|++||+.+++... ++..|..
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~------- 196 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS------- 196 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC-------
Confidence 3889999999 899998884 57899999997 567766 456899999998876432 2222210
Q ss_pred CCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeec
Q 003336 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (828)
Q Consensus 184 ~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls 263 (828)
++ ..|+|..+. ..+.
T Consensus 197 --------~v----~~~~~sp~~------------------------~~~~----------------------------- 211 (450)
T 2vdu_B 197 --------ML----TDVHLIKDS------------------------DGHQ----------------------------- 211 (450)
T ss_dssp --------CE----EEEEEEECT------------------------TSCE-----------------------------
T ss_pred --------ce----EEEEEcCCC------------------------CCCc-----------------------------
Confidence 00 112222100 0000
Q ss_pred cccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecC
Q 003336 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQ 342 (828)
Q Consensus 264 ~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~D 342 (828)
.+++++.+|.|+|||+.+++++.. +.+|..+|.+++|+ +|++|++++.|
T Consensus 212 -----------------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 212 -----------------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp -----------------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred -----------------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 123445688999999999998887 56999999999999 99999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC-----------------------CccccEEEEEEccCCCEEEEEe
Q 003336 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-----------------------LTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 343 Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG-----------------------~t~a~I~sIaFSpDg~~LAs~S 399 (828)
|+ |+|||+.++ ..+..+..+ .....|.+|+|+||+++|++++
T Consensus 262 ~~-v~vwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 262 DK-IFAWDWKTG--------------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp SE-EEEEETTTC--------------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred Ce-EEEEECCCC--------------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 97 899999876 233333211 1123489999999999999999
Q ss_pred -CCCcEEEEec
Q 003336 400 -SRGTSHLFAI 409 (828)
Q Consensus 400 -~DGTVhIwdl 409 (828)
.|++|+||++
T Consensus 327 ~~d~~i~iw~~ 337 (450)
T 2vdu_B 327 EATKCIIILEM 337 (450)
T ss_dssp TTCSEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 8999999999
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-18 Score=178.62 Aligned_cols=230 Identities=12% Similarity=0.188 Sum_probs=163.6
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
+.+++.+.++.++|||+.. +.....+. +.++|.++++.|+. .+|+++.....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~--------------~~l~~~~~~~~------------ 138 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCG--------------NYFLAILDNVM------------ 138 (369)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTS--------------SEEEEEECCBT------------
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEee-cCCCeEEEEEccCC--------------CEEEEecCCcc------------
Confidence 3455555666699999987 45555555 88999999998753 25555553210
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcE-----------EEEEe-CCC--CEEEEEEc--CCEEEE-EeCCEEEEE
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------VHMLK-FRS--PIYSVRCS--SRVVAI-CQAAQVHCF 160 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-----------V~tL~-f~s--~V~sV~~S--~riLAV-s~~~~I~Iw 160 (828)
..++.|++||+.++.. +..+. +.. .|.+++++ +++|++ +.++.|++|
T Consensus 139 ----------------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 139 ----------------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ----------------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ----------------CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 0237899999987643 22222 222 89999996 556666 567899999
Q ss_pred ECCC-CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeee
Q 003336 161 DAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (828)
Q Consensus 161 Dl~t-~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~ 239 (828)
|+.+ .+.+..+..+... + ..+++.. ++.
T Consensus 203 d~~~~~~~~~~~~~~~~~---------------v----~~~~~~~---------------------------~~~----- 231 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKS---------------I----SDMQFSP---------------------------DLT----- 231 (369)
T ss_dssp ETTTTTEEEEEEECCSSC---------------E----EEEEECT---------------------------TSS-----
T ss_pred ECCCCcEeEEEEecCCCc---------------e----eEEEECC---------------------------CCC-----
Confidence 9998 6667776654210 1 1122321 011
Q ss_pred ecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc
Q 003336 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 319 (828)
Q Consensus 240 A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a 319 (828)
.++.+..+|.|+|||+.+++.+..+.
T Consensus 232 -----------------------------------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 232 -----------------------------------------------------YFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp -----------------------------------------------------EEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred -----------------------------------------------------EEEEecCCceEEEEECCCCceeeeec-
Confidence 12234567899999999999999988
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCC-------------EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEE
Q 003336 320 HKSPISALCFDPSGILLVTASVQGH-------------NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt-------------~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sI 386 (828)
|..++.+++|+|+|++|++++.++. .|++||+.++ ..+..+ .++. ..|.++
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~-~~~~-~~v~~~ 321 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--------------EEIGRV-QGHF-GPLNTV 321 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--------------CEEEEE-ECCS-SCEEEE
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--------------cchhhe-eccc-CcEEEE
Confidence 7789999999999999999999873 4899998875 344455 3443 459999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 387 SFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 387 aFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+|+||+++|++++.||+|+||++...
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EECCCCCEEEEEcCCCeEEEEECccc
Confidence 99999999999999999999999763
No 86
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.82 E-value=2.7e-18 Score=179.08 Aligned_cols=235 Identities=12% Similarity=0.169 Sum_probs=163.8
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
+.++.|+.+...+ +.+|+.......... -.|.++|.++++.|+. .+|+.+++
T Consensus 19 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~--------------~~l~~~~d------------ 71 (337)
T 1gxr_A 19 ADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPT--------------RHVYTGGK------------ 71 (337)
T ss_dssp SSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSSS--------------SEEEEECB------------
T ss_pred CCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecCC--------------cEEEEcCC------------
Confidence 3466776666444 555655442222222 2588999999998742 25544331
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcE---EEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCC
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY---VHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL 165 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~---V~tL~---f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~ 165 (828)
++|++||+.+++. +..+. +...|.+++|+ +++|++ +.+++|++||+.+.
T Consensus 72 ----------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 72 ----------------------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp ----------------------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred ----------------------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 6799999998763 34443 46789999997 566666 56789999999988
Q ss_pred c--eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc
Q 003336 166 E--IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (828)
Q Consensus 166 ~--~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~s 243 (828)
+ ....+..+.. ++ ..+++.. ++.
T Consensus 130 ~~~~~~~~~~~~~---------------~i----~~~~~~~---------------------------~~~--------- 154 (337)
T 1gxr_A 130 TPRIKAELTSSAP---------------AC----YALAISP---------------------------DSK--------- 154 (337)
T ss_dssp --EEEEEEECSSS---------------CE----EEEEECT---------------------------TSS---------
T ss_pred CcceeeecccCCC---------------ce----EEEEECC---------------------------CCC---------
Confidence 7 3444433311 00 1122221 000
Q ss_pred ccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC
Q 003336 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP 323 (828)
Q Consensus 244 sk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~p 323 (828)
.++.+..+|.|++||+.+++.+..+..|..+
T Consensus 155 -------------------------------------------------~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 185 (337)
T 1gxr_A 155 -------------------------------------------------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp -------------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -------------------------------------------------EEEEEeCCCcEEEEeCCCCceeeeeecccCc
Confidence 1223456789999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCc
Q 003336 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGT 403 (828)
|.+++|+|+|++|++++.||+ |++||+..+ ..+..+. + ...|.+++|+||+++|++++.|++
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~--~-~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNT-VRSWDLREG--------------RQLQQHD--F-TSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEE--C-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEECCCCCEEEEEecCCc-EEEEECCCC--------------ceEeeec--C-CCceEEEEECCCCCEEEEEcCCCc
Confidence 999999999999999999997 899999875 3334442 1 245999999999999999999999
Q ss_pred EEEEecCCCCCceeeccCC
Q 003336 404 SHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 404 VhIwdl~~~gg~~~~~~H~ 422 (828)
|++|++... ....+..|.
T Consensus 248 i~~~~~~~~-~~~~~~~~~ 265 (337)
T 1gxr_A 248 VEVLHVNKP-DKYQLHLHE 265 (337)
T ss_dssp EEEEETTSS-CEEEECCCS
T ss_pred EEEEECCCC-CeEEEcCCc
Confidence 999999864 344555554
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.82 E-value=9.2e-19 Score=186.41 Aligned_cols=208 Identities=12% Similarity=0.161 Sum_probs=143.7
Q ss_pred eEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEE
Q 003336 41 HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVH 120 (828)
Q Consensus 41 ~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVr 120 (828)
+.++..|.++|.++++.|++ .+||.++. +++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g--------------~~lasgs~---------------------------------D~~v~ 38 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG--------------TRLATCSS---------------------------------DRSVK 38 (316)
T ss_dssp --------CCEEEEEECGGG--------------CEEEEEET---------------------------------TTEEE
T ss_pred eeecccccCeEEEeeEcCCC--------------CEEEEEeC---------------------------------CCeEE
Confidence 44566799999999998753 25554442 27899
Q ss_pred EEECCCCc--EEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEEcCCCccCCCCCCCCCccc
Q 003336 121 FYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 121 lWDL~Tg~--~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~--~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
|||+++++ ++.+|+ +..+|.+|+|+ +++|+. +.|++|++||+.+++ .+.++..|... +
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~------------V 106 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS------------V 106 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC------------C
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc------------e
Confidence 99999885 456665 46799999995 456665 668999999999864 45555444210 0
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
+-|+|..+. .+
T Consensus 107 -------~~v~~~p~~-------------------------~g------------------------------------- 117 (316)
T 3bg1_A 107 -------NSVCWAPHD-------------------------YG------------------------------------- 117 (316)
T ss_dssp -------CEEEECCTT-------------------------TC-------------------------------------
T ss_pred -------EEEEECCCC-------------------------CC-------------------------------------
Confidence 112332100 00
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEEcCC---------------
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPS--------------- 332 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~---~i~~f~aH~~pIsaLaFSPd--------------- 332 (828)
..+++++.||.|+|||+.++. ....+.+|...|.+++|+|+
T Consensus 118 ---------------------~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 118 ---------------------LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ---------------------SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred ---------------------cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 013445678999999998763 24567799999999999998
Q ss_pred --CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC----CEEEEEeCCCcEEE
Q 003336 333 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHL 406 (828)
Q Consensus 333 --G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----~~LAs~S~DGTVhI 406 (828)
+++||+|+.||+ |+|||+... .....+..| ++|. ..|.+++|+|++ ++||+++.||+|+|
T Consensus 177 ~~~~~l~sgs~D~~-v~lWd~~~~-----------~~~~~~~~l-~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 177 NYIKRFASGGCDNL-IKLWKEEED-----------GQWKEEQKL-EAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CCCCBEECCBTTSB-CCEEEECTT-----------SCEEEEECC-BCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred cccceEEEecCCCe-EEEEEeCCC-----------Cccceeeec-ccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 579999999998 899998643 011234444 4554 359999999997 89999999999999
Q ss_pred EecCC
Q 003336 407 FAINP 411 (828)
Q Consensus 407 wdl~~ 411 (828)
|++..
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99976
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=9e-20 Score=195.68 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=89.0
Q ss_pred cccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCC----CccCCCC
Q 003336 295 PDADNVGMVIVRDIVSKN---VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS----SACDAGT 366 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~---~i~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~----~~~~~~~ 366 (828)
+++..+|.|+|||+.+++ .+..+.. |..+|.+|+|+|+|++||+++.||+ |+|||+........ .......
T Consensus 116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~ 194 (377)
T 3dwl_C 116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLP 194 (377)
T ss_dssp EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccc
Confidence 345678999999999887 4788887 9999999999999999999999998 89999864310000 0000001
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC----ceeeccCCC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG----SVNFQPTDA 423 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg----~~~~~~H~~ 423 (828)
....+..+ ++. ..|.+++|+||+++||+++.||+|+|||+..... ...+..|..
T Consensus 195 ~~~~~~~~--~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 195 FNTVCAEY--PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp EEEEEECC--CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred hhhhhhcc--cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 12333444 443 4599999999999999999999999999998766 456666654
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.81 E-value=2.7e-18 Score=180.90 Aligned_cols=244 Identities=11% Similarity=0.119 Sum_probs=164.8
Q ss_pred CcEEEEEc----cCCeEEEEecCCCceeEe-eeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLGY----RSGFQVWDVEEADNVHDL-VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~Gy----~~G~qVWdv~~~~~~~el-lS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
..+++.|. ++.++|||++.. ....+ ...|.++|.++++.|+.. ...+|+.++.
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~l~~~~~---------- 88 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQHG-DLKLLREIEKAKPIKCGTFGATSL-----------QQRYLATGDF---------- 88 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECSS-SEEEEEEEEESSCEEEEECTTCCT-----------TTCCEEEEET----------
T ss_pred ceEEEecCccCCCcEEEEEeCCCC-cccceeeecccCcEEEEEEcCCCC-----------CCceEEEecC----------
Confidence 35666664 566999999973 44333 336889999999987410 0124554442
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCc-EEEEEe-CCCCEEEEEE------c--CCEEEE-EeCCEEEEEE
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLK-FRSPIYSVRC------S--SRVVAI-CQAAQVHCFD 161 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~-~V~tL~-f~s~V~sV~~------S--~riLAV-s~~~~I~IwD 161 (828)
+++|++||+.+++ .+..+. +...|.++.+ + +++|++ +.++.|++||
T Consensus 89 -----------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 89 -----------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp -----------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred -----------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 1679999999998 888876 4678999965 2 456665 5678999999
Q ss_pred CCCCc-eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003336 162 AATLE-IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (828)
Q Consensus 162 l~t~~-~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A 240 (828)
+.+.+ .+.++..+..... .++ .-+++.. .++ .++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-----------~~v----~~~~~~~--------------------~~~---~~~------- 180 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENK-----------RDC----WTVAFGN--------------------AYN---QEE------- 180 (357)
T ss_dssp TTSCSSCSEEECCCTTSCC-----------CCE----EEEEEEC--------------------CCC----CC-------
T ss_pred CCCCCCcceeccccCCCCC-----------Cce----EEEEEEe--------------------ccC---CCC-------
Confidence 99887 5666544321000 000 0111110 000 000
Q ss_pred cccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC
Q 003336 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (828)
Q Consensus 241 ~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH 320 (828)
..++.+..+|.|++||+.+++.+ ....|
T Consensus 181 ---------------------------------------------------~~l~~~~~d~~i~i~d~~~~~~~-~~~~~ 208 (357)
T 3i2n_A 181 ---------------------------------------------------RVVCAGYDNGDIKLFDLRNMALR-WETNI 208 (357)
T ss_dssp ---------------------------------------------------CEEEEEETTSEEEEEETTTTEEE-EEEEC
T ss_pred ---------------------------------------------------CEEEEEccCCeEEEEECccCcee-eecCC
Confidence 01334557899999999998874 44678
Q ss_pred CCCeEEEEEcC---CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEE
Q 003336 321 KSPISALCFDP---SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIM 396 (828)
Q Consensus 321 ~~pIsaLaFSP---dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LA 396 (828)
..+|.+++|+| ++.+|++++.||+ |+|||+..+..- .......+ .++. ..|.+++|+||++ +|+
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~---------~~~~~~~~-~~~~-~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQHPT---------KGFASVSE-KAHK-STVWQVRHLPQNRELFL 276 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEETT---------TEEEEEEE-ECCS-SCEEEEEEETTEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCCcc---------cceeeecc-CCCc-CCEEEEEECCCCCcEEE
Confidence 99999999999 9999999999997 899999764110 00111122 2443 4599999999999 899
Q ss_pred EEeCCCcEEEEecCCCCCc
Q 003336 397 ISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 397 s~S~DGTVhIwdl~~~gg~ 415 (828)
+++.||+|+|||+......
T Consensus 277 ~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEETTSEEEEEEEECCSCC
T ss_pred EEeCCCcEEEeecCCCccc
Confidence 9999999999999875443
No 90
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.1e-18 Score=184.85 Aligned_cols=104 Identities=11% Similarity=0.137 Sum_probs=79.6
Q ss_pred cccCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 295 PDADNVGMVIVRDIVSKNVI-AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i-~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+++..+|.|+|||+.+++.+ ..|.. |..+|.+|+|+|+|.+|++++ +++ |+|||++....- ..+.
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~-----------~~~~ 252 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGT-----------LAYP 252 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTC-----------BSSC
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcc-----------eeec
Confidence 34567899999999999988 88998 999999999999999999999 445 999999875110 0000
Q ss_pred EEecCCccccE--EEEEEccCCCEEEEEeC-CCcEEEEecCCCC
Q 003336 373 RLQRGLTNAVI--QDISFSDDSNWIMISSS-RGTSHLFAINPLG 413 (828)
Q Consensus 373 ~L~RG~t~a~I--~sIaFSpDg~~LAs~S~-DGTVhIwdl~~~g 413 (828)
.+. .+. ..+ .+++|+|+|++||+++. |++++||++....
T Consensus 253 ~~~-~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 253 TYT-IPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ccc-ccc-ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 000 000 112 46999999999999999 9999999997653
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.4e-18 Score=179.69 Aligned_cols=213 Identities=13% Similarity=0.199 Sum_probs=152.4
Q ss_pred ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCE
Q 003336 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (828)
Q Consensus 39 ~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (828)
....++..|.++|.++++.|+. .+||.++. | ++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~--------------~~l~~~~~----------d-----------------------g~ 34 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG--------------KRLATCSS----------D-----------------------KT 34 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS--------------SEEEEEET----------T-----------------------SC
T ss_pred CccEEecCCcccEEEEEEcCCC--------------CEEEEEEC----------C-----------------------Cc
Confidence 3456778899999999998753 35665542 1 67
Q ss_pred EEEEECC--CCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEEcCCCccCCCCCCCCCc
Q 003336 119 VHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGI 188 (828)
Q Consensus 119 VrlWDL~--Tg~~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~--~l~tL~t~p~~~~~p~~~~~~~ 188 (828)
|++||+. +++.+..+. +...|.+|+|+ +++|++ +.++.|++||+.+++ .+..+..+..
T Consensus 35 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------ 102 (379)
T 3jrp_A 35 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA------------ 102 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS------------
T ss_pred EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc------------
Confidence 9999998 667777776 46799999996 577776 567899999999886 4444433311
Q ss_pred ccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccc
Q 003336 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (828)
Q Consensus 189 ~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~ 268 (828)
++ ..|++..+. .+.
T Consensus 103 ---~v----~~~~~~~~~-------------------------~~~---------------------------------- 116 (379)
T 3jrp_A 103 ---SV----NSVQWAPHE-------------------------YGP---------------------------------- 116 (379)
T ss_dssp ---CE----EEEEECCGG-------------------------GCS----------------------------------
T ss_pred ---ce----EEEEeCCCC-------------------------CCC----------------------------------
Confidence 01 112232100 000
Q ss_pred ccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcC-------------CC
Q 003336 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDP-------------SG 333 (828)
Q Consensus 269 ~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSP-------------dG 333 (828)
.++.+..+|.|+|||+.+.. ....+.+|..+|.+++|+| ++
T Consensus 117 ------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 117 ------------------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp ------------------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred ------------------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 12334568999999999873 4556789999999999999 79
Q ss_pred CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC---CCEEEEEeCCCcEEEEecC
Q 003336 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 334 ~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD---g~~LAs~S~DGTVhIwdl~ 410 (828)
.+|++++.||+ |+|||+..+.. ....+..+ .++. ..|.+++|+|| +++|++++.||+|+|||+.
T Consensus 173 ~~l~~~~~dg~-i~i~d~~~~~~----------~~~~~~~~-~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 173 RKFVTGGADNL-VKIWKYNSDAQ----------TYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEETTSC-EEEEEEETTTT----------EEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CEEEEEeCCCe-EEEEEecCCCc----------ceeeEEEE-eccc-CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 99999999998 89999976410 12233344 3443 45999999999 9999999999999999998
Q ss_pred CCC
Q 003336 411 PLG 413 (828)
Q Consensus 411 ~~g 413 (828)
...
T Consensus 240 ~~~ 242 (379)
T 3jrp_A 240 NEQ 242 (379)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 92
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=5.3e-17 Score=174.97 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=164.6
Q ss_pred cEEEEEc-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCccc
Q 003336 19 RVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (828)
Q Consensus 19 ~vLl~Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~ 97 (828)
.+|+.|. ++.++|||++. +.+...+..+ ..+.++++.|+. ..|++++..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg--------------~~l~~~~~~-------------- 52 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDG--------------TKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTS--------------SEEEEEEGG--------------
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEeecC-CCcceEEECCCC--------------CEEEEECCC--------------
Confidence 4566665 55699999986 5565555544 458889988753 244444321
Q ss_pred ccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--CCEEEEEECCCCceEEEEEc
Q 003336 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~--~~~I~IwDl~t~~~l~tL~t 173 (828)
.++|++||+.+++.+..+.....|.+++|+ ++.|+++. ++.|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 178999999999999999998899999997 56665543 57999999999988777654
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEe
Q 003336 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (828)
Q Consensus 174 ~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~ 253 (828)
+.. + ..+++.. +|..+
T Consensus 115 ~~~---------------~-----~~~~~s~---------------------------dg~~l----------------- 130 (391)
T 1l0q_A 115 GKS---------------P-----LGLALSP---------------------------DGKKL----------------- 130 (391)
T ss_dssp SSS---------------E-----EEEEECT---------------------------TSSEE-----------------
T ss_pred CCC---------------c-----ceEEECC---------------------------CCCEE-----------------
Confidence 311 1 1123321 11100
Q ss_pred ccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003336 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (828)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG 333 (828)
++++..++.|++||+.+++.+..+..|. .+.+++|+|+|
T Consensus 131 ----------------------------------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg 169 (391)
T 1l0q_A 131 ----------------------------------------YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDG 169 (391)
T ss_dssp ----------------------------------------EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTS
T ss_pred ----------------------------------------EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCC
Confidence 1123457899999999999999988775 56999999999
Q ss_pred CEE-EEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe---CCCcEEEEec
Q 003336 334 ILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS---SRGTSHLFAI 409 (828)
Q Consensus 334 ~lL-ATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S---~DGTVhIwdl 409 (828)
++| ++++.+|+ |++||+.++ ..+..+.. ...+.+++|+||+++|++++ .+++|++||+
T Consensus 170 ~~l~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 170 TKVYVANFDSMS-ISVIDTVTN--------------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CEEEEEeCCCCE-EEEEECCCC--------------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 987 56677776 899999875 33334432 23489999999999999998 6899999999
Q ss_pred CCCCCceeeccC
Q 003336 410 NPLGGSVNFQPT 421 (828)
Q Consensus 410 ~~~gg~~~~~~H 421 (828)
........+..|
T Consensus 232 ~~~~~~~~~~~~ 243 (391)
T 1l0q_A 232 GTNKITARIPVG 243 (391)
T ss_dssp TTTEEEEEEECC
T ss_pred CCCeEEEEEecC
Confidence 875443444433
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.81 E-value=3.9e-18 Score=179.90 Aligned_cols=134 Identities=12% Similarity=0.234 Sum_probs=104.0
Q ss_pred CEEEEEECCCCcEEEEEe------CCCCEEEEEEcC------CEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCC
Q 003336 117 TVVHFYSLRSQSYVHMLK------FRSPIYSVRCSS------RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 183 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~------f~s~V~sV~~S~------riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~ 183 (828)
+.|++||+.+++.+..++ +...|.+++|+. ++|++ +.++.|++||+.+++.+.++..|...
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------ 117 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------ 117 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------
Confidence 579999999999888876 346799999973 35665 66789999999999998888765321
Q ss_pred CCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeec
Q 003336 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (828)
Q Consensus 184 ~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls 263 (828)
+ ..|+|... ++.
T Consensus 118 ---------i----~~~~~~~~--------------------------~~~----------------------------- 129 (366)
T 3k26_A 118 ---------I----NELKFHPR--------------------------DPN----------------------------- 129 (366)
T ss_dssp ---------E----EEEEECSS--------------------------CTT-----------------------------
T ss_pred ---------E----EEEEECCC--------------------------CCC-----------------------------
Confidence 1 11233210 000
Q ss_pred cccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEe
Q 003336 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTAS 340 (828)
Q Consensus 264 ~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f---~aH~~pIsaLaFSPdG~lLATaS 340 (828)
.++++..+|.|+|||+.+++.+..+ .+|..+|.+|+|+|+|.+|++++
T Consensus 130 -----------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 130 -----------------------------LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -----------------------------EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 1233456899999999999999998 78999999999999999999999
Q ss_pred cCCCEEEEEeCCCC
Q 003336 341 VQGHNINIFKIIPG 354 (828)
Q Consensus 341 ~DGt~I~IWdi~~~ 354 (828)
.||+ |+|||+..+
T Consensus 181 ~dg~-i~i~d~~~~ 193 (366)
T 3k26_A 181 MDHS-LKLWRINSK 193 (366)
T ss_dssp TTSC-EEEEESCSH
T ss_pred CCCC-EEEEECCCC
Confidence 9998 899999864
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.80 E-value=8.3e-18 Score=178.60 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=157.8
Q ss_pred EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEE
Q 003336 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (828)
Q Consensus 42 ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrl 121 (828)
+++..|.++|.++++.|+. .+|++++. .++|++
T Consensus 2 ~~~~~~~~~i~~~~~s~~~--------------~~l~~~~~---------------------------------d~~v~i 34 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDR--------------TQIAICPN---------------------------------NHEVHI 34 (372)
T ss_dssp CEEESCSSCCCEEEECTTS--------------SEEEEECS---------------------------------SSEEEE
T ss_pred ceecccCCCeEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEE
Confidence 4566789999999998753 25654432 178999
Q ss_pred EECCCCc--EEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeee
Q 003336 122 YSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (828)
Q Consensus 122 WDL~Tg~--~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAl 195 (828)
||+.+++ .+.++. +...|.+++|+ +++|++ +.++.|++||+.+.+....+...... .++
T Consensus 35 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~v-- 99 (372)
T 1k8k_C 35 YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-------------RAA-- 99 (372)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-------------SCE--
T ss_pred EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-------------Cce--
Confidence 9999998 888886 56799999997 667766 56789999999888755554321100 000
Q ss_pred ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCC
Q 003336 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (828)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (828)
..++|.. ++.
T Consensus 100 --~~~~~~~---------------------------~~~----------------------------------------- 109 (372)
T 1k8k_C 100 --RCVRWAP---------------------------NEK----------------------------------------- 109 (372)
T ss_dssp --EEEEECT---------------------------TSS-----------------------------------------
T ss_pred --eEEEECC---------------------------CCC-----------------------------------------
Confidence 1122221 000
Q ss_pred CcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---EEEE-eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 276 si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~---~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
.++.+..+|.|+|||+.+++ .... ..+|..+|.+|+|+|+|++|++++.||+ |+|||+
T Consensus 110 -----------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~ 171 (372)
T 1k8k_C 110 -----------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFSA 171 (372)
T ss_dssp -----------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEEC
T ss_pred -----------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC-EEEEEc
Confidence 12234567899999999876 2334 4689999999999999999999999998 899997
Q ss_pred CCCCCCCCC-c---cCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 352 IPGILGTSS-A---CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 352 ~~~~~~~~~-~---~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
......... . .........+..+. ++. ..|.+++|+||+++|++++.||+|+|||+........+..|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESS-SSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECC-CCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred ccccccccccccccccccchhhheEecC-CCC-CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence 632100000 0 00000123444443 333 4599999999999999999999999999988766667776643
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.80 E-value=6.9e-18 Score=187.29 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=162.8
Q ss_pred CcEEEEEccCC-eEEEEecCC---------CceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEA---------DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSC 87 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~---------~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g 87 (828)
+.+|+.|..+| ++|||+... ......+..|.+.|.++.+.|.. ..+|+.++.
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------------~~~l~s~~~----- 202 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL-------------NGYLLSASD----- 202 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS-------------TTEEEEECT-----
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC-------------CCeEEEEeC-----
Confidence 45777776555 999999862 23444556788999999998742 114543332
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcE-------EEEE-eCCCCEEEEEEc---CCEEEE-EeCC
Q 003336 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-------VHML-KFRSPIYSVRCS---SRVVAI-CQAA 155 (828)
Q Consensus 88 ~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-------V~tL-~f~s~V~sV~~S---~riLAV-s~~~ 155 (828)
+++|++||+.++.. ...+ .+...|.+|+|+ +.++++ +.++
T Consensus 203 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 203 ----------------------------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp ----------------------------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----------------------------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 16799999988432 2334 346689999996 467766 5688
Q ss_pred EEEEEECCCC---ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCC
Q 003336 156 QVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (828)
Q Consensus 156 ~I~IwDl~t~---~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~ 232 (828)
.|++||+++. +.+..+..|.. .+ +-|+|.. +
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~------------~v-------~~i~~~p---------------------------~ 288 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTA------------EV-------NCLSFNP---------------------------Y 288 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSS------------CE-------EEEEECS---------------------------S
T ss_pred eEEEEECCCCCCCcceeEeecCCC------------Ce-------EEEEeCC---------------------------C
Confidence 9999999987 34455544321 00 1122321 0
Q ss_pred CcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC-C
Q 003336 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-K 311 (828)
Q Consensus 233 g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s-~ 311 (828)
+. ..+++++.+|.|+|||+.+ +
T Consensus 289 ~~---------------------------------------------------------~~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 289 SE---------------------------------------------------------FILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp CT---------------------------------------------------------TEEEEEETTSEEEEEETTCTT
T ss_pred CC---------------------------------------------------------CEEEEEeCCCeEEEEeCCCCC
Confidence 00 0123456789999999998 6
Q ss_pred cEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc
Q 003336 312 NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (828)
Q Consensus 312 ~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 390 (828)
.++..+.+|..+|.+|+|+|+|. +||+++.||+ |+|||+..............+....++.+ .++. ..|.+++|+|
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~v~~~~~~p 388 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHT-AKISDFSWNP 388 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCS-SCEEEEEECS
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEc-CCCC-CCceEEEECC
Confidence 78899999999999999999995 7999999998 89999976300000000000001233443 4554 3599999999
Q ss_pred CCC-EEEEEeCCCcEEEEecCC
Q 003336 391 DSN-WIMISSSRGTSHLFAINP 411 (828)
Q Consensus 391 Dg~-~LAs~S~DGTVhIwdl~~ 411 (828)
+++ +|++++.||+|+||++..
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 999 899999999999999964
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.80 E-value=2.1e-18 Score=187.08 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=85.8
Q ss_pred ccccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCc-c-------
Q 003336 294 FPDADNVGM-VIVRDIVSKNVIAQFR-A-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-C------- 362 (828)
Q Consensus 294 ~~s~~~dG~-V~IwDl~s~~~i~~f~-a-H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~-~------- 362 (828)
+++++.||+ |+|||+.+++++..|+ + |..+|.+|+|+|||++||+++.||+ |+|||+.......... .
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeeccc
Confidence 456678897 9999999999999998 5 9999999999999999999999997 8999997641110000 0
Q ss_pred -CCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 363 -DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 363 -~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
...-. ...+.+..+. ...+..++|++|+++|++++.||++++|++...+
T Consensus 289 ~~~~~~-~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWS-LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSC-SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccc-eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000 0112222221 1124669999999999999999999999997643
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.80 E-value=4.4e-17 Score=202.76 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=183.3
Q ss_pred CcEEEE-EccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~-Gy~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
.+.|+. +.++.++|||+.+ +.....+..|.++|.++++.|++ .+|+.++. |
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~~~----------d--- 678 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDD--------------SYIATCSA----------D--- 678 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------T---
T ss_pred CCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCC--------------CEEEEEeC----------C---
Confidence 444554 5556699999987 45556667899999999998853 25655542 1
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCceEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~----riLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
++|++||+.+++++.++.. ...|.+++|+. .++++ +.++.|++||+.+++++.+
T Consensus 679 --------------------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~ 738 (1249)
T 3sfz_A 679 --------------------KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738 (1249)
T ss_dssp --------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE
T ss_pred --------------------CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe
Confidence 7899999999999999974 66999999963 35555 5678999999999999999
Q ss_pred EEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~la 248 (828)
+..|... +..++++| ++|+.++. +..+.-|.....+.+.
T Consensus 739 ~~~h~~~------------v~~~~~sp~~~~l~s~s~---------------------------dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 739 MFGHTNS------------VNHCRFSPDDELLASCSA---------------------------DGTLRLWDVRSANERK 779 (1249)
T ss_dssp ECCCSSC------------EEEEEECSSTTEEEEEES---------------------------SSEEEEEEGGGTEEEE
T ss_pred ecCCCCC------------EEEEEEecCCCEEEEEEC---------------------------CCeEEEEeCCCCcccc
Confidence 8776431 22344444 45555432 1122222222211110
Q ss_pred ceeEeccCccceeeccccccc-cCCC-CCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeE
Q 003336 249 AGIVNLGDLGYKKLSQYCSEF-LPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPIS 325 (828)
Q Consensus 249 sGl~~lGd~g~~~ls~y~~~~-~p~~-~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIs 325 (828)
. + ..... +.... .+.. ...+... .+..+|. .++ ...++.|.+||+.++..+..+. +|..+|.
T Consensus 780 ~-~-~~~~~-------~~~~~~~~~~~~~~v~~~--~~s~dg~---~l~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 780 S-I-NVKRF-------FLSSEDPPEDVEVIVKCC--SWSADGD---KII-VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp E-E-ECCCC-------C--------CCCCCBCCC--CBCTTSS---EEE-EEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred e-e-ccccc-------ccccCCccccccceEEEE--EECCCCC---EEE-EEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 0 0 00000 00000 0000 0000000 0001111 122 2346899999999999888877 8999999
Q ss_pred EEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEE
Q 003336 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 405 (828)
Q Consensus 326 aLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVh 405 (828)
+++|+|+|.+|++++.||+ |+|||+.++ ..+..+ +++. ..|.+++|+||+++|++++.||+|+
T Consensus 845 ~~~~sp~~~~l~~~~~dg~-v~vwd~~~~--------------~~~~~~-~~h~-~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYC-VELWNIDSR--------------LKVADC-RGHL-SWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp EEEECSSTTEEEEECSSSC-EEEEETTTT--------------EEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEEeCCCe-EEEEEcCCC--------------ceeeec-CCCc-cceEEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999998 899999875 445555 4554 4599999999999999999999999
Q ss_pred EEecCC
Q 003336 406 LFAINP 411 (828)
Q Consensus 406 Iwdl~~ 411 (828)
+|++..
T Consensus 908 vw~~~~ 913 (1249)
T 3sfz_A 908 VWETKK 913 (1249)
T ss_dssp EEEHHH
T ss_pred EEEccc
Confidence 999864
No 98
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=8.2e-18 Score=198.89 Aligned_cols=219 Identities=11% Similarity=0.189 Sum_probs=169.1
Q ss_pred eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEE
Q 003336 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (828)
Q Consensus 40 ~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (828)
....+..|.+.|+++++.|+. ++||+++.+ ++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~--------------~~la~~~~~---------------------------------g~v 37 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLYS---------------------------------GRV 37 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS--------------SEEEEEETT---------------------------------SEE
T ss_pred cceeeecCCCceEEEEECCCC--------------CEEEEEeCC---------------------------------CEE
Confidence 456778899999999998852 467766531 789
Q ss_pred EEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeee
Q 003336 120 HFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (828)
Q Consensus 120 rlWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAl 195 (828)
++||+.+++.+.++. +..+|.+++|+ +++|++ +.++.|++||+.+++.+.++..|... +
T Consensus 38 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---------------v-- 100 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I-- 100 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC---------------E--
Confidence 999999999999998 46799999997 566666 56789999999999999888766321 1
Q ss_pred ccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCC
Q 003336 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (828)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (828)
+.+++.. ++.
T Consensus 101 --~~~~~s~---------------------------~~~----------------------------------------- 110 (814)
T 3mkq_A 101 --RSIAVHP---------------------------TKP----------------------------------------- 110 (814)
T ss_dssp --EEEEECS---------------------------SSS-----------------------------------------
T ss_pred --EEEEEeC---------------------------CCC-----------------------------------------
Confidence 1223321 011
Q ss_pred CcccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCC
Q 003336 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP 353 (828)
Q Consensus 276 si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~ 353 (828)
.+++++.+|.|+|||+.++ .....+.+|..+|.+++|+| +|.+|++++.||+ |++||+..
T Consensus 111 -----------------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd~~~ 172 (814)
T 3mkq_A 111 -----------------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLGQ 172 (814)
T ss_dssp -----------------EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTC
T ss_pred -----------------EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEECCC
Confidence 1223456889999999987 77888999999999999999 8999999999997 89999976
Q ss_pred CCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
+ .....+..++ ...|..++|+| |+++|++++.||+|++||+........+.+|...+
T Consensus 173 ~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 173 S--------------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp S--------------SCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred C--------------cceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 1223333322 24589999999 99999999999999999998876666777776543
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.3e-17 Score=169.31 Aligned_cols=248 Identities=11% Similarity=0.093 Sum_probs=165.5
Q ss_pred ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCE
Q 003336 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (828)
Q Consensus 39 ~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (828)
.....+..|.++|.++++ |+. .+|+.++. +++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~--------------~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDD--------------SKVASVSR---------------------------------DGT 40 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EET--------------TEEEEEET---------------------------------TSE
T ss_pred HHHHHhhCCCCCcEEEEe-cCC--------------CEEEEEEc---------------------------------CCc
Confidence 455667789999999998 642 25554442 178
Q ss_pred EEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCC---ceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 119 VHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 119 VrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~---~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
|++||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+. +.+..+..|.. .+.
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------~i~ 108 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------NVC 108 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------CEE
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------CEE
Confidence 99999999998888765 7799999996 566665 66789999999865 44555544422 122
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
.+++.+++|+.++.. ..+..|. ..+.+. -+ .++.
T Consensus 109 ~~~~~~~~l~~~~~d---------------------------~~i~~~d--~~~~~~-~~--~~~~-------------- 142 (313)
T 3odt_A 109 SLSFQDGVVISGSWD---------------------------KTAKVWK--EGSLVY-NL--QAHN-------------- 142 (313)
T ss_dssp EEEEETTEEEEEETT---------------------------SEEEEEE--TTEEEE-EE--ECCS--------------
T ss_pred EEEecCCEEEEEeCC---------------------------CCEEEEc--CCcEEE-ec--ccCC--------------
Confidence 344445555554321 1121111 000000 00 0000
Q ss_pred CCCCCccc--ccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEEcCCCCEEEEEecCCCEEEE
Q 003336 272 DSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINI 348 (828)
Q Consensus 272 ~~~~si~s--a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a-H~~pIsaLaFSPdG~lLATaS~DGt~I~I 348 (828)
..+.. ..+.. ...++.+..+|.|++|| ..+.+..+.. |..+|.+++|+|+|. |++++.||+ |+|
T Consensus 143 ---~~v~~~~~~~~~------~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i 209 (313)
T 3odt_A 143 ---ASVWDAKVVSFS------ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKL 209 (313)
T ss_dssp ---SCEEEEEEEETT------TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEE
T ss_pred ---CceeEEEEccCC------CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEE
Confidence 00000 00100 12356677899999999 5677788887 999999999999999 999999997 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003336 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~ 422 (828)
||+..+ ..+..+. ++. ..|.+++|+||+ .|++++.||+|+|||+........+..|.
T Consensus 210 ~d~~~~--------------~~~~~~~-~~~-~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 210 VDMHTG--------------DVLRTYE-GHE-SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EETTTC--------------CEEEEEE-CCS-SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EECCch--------------hhhhhhh-cCC-ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 999875 3445553 443 459999999999 58899999999999998876666666654
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.79 E-value=1e-17 Score=182.96 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred CeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEecCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 301 GMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 301 G~V~IwDl~s~~~i~--~f~aH~~pIsaLaFSPdG~lLATaS~DGt---~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+.+++|+..+++.+. .+..|...|.+++|+|||++|++++.|+. .+++|++.... ........+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----------~~~~~~~~~~ 266 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----------TSVLRSKQVT 266 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----------EEEEEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----------ecceeeeeec
Confidence 456777777776654 34578899999999999999999998874 47889887640 0112233343
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-ccCCCCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 426 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 426 (828)
++. ..|.+|+|||||++||+|+.|++|+|||+.+......+ ++|...+.
T Consensus 267 -~~~-~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 267 -NRF-KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp -SSC-SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred -CCC-CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 333 34999999999999999999999999999886655554 67865443
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.79 E-value=2.3e-16 Score=170.00 Aligned_cols=234 Identities=12% Similarity=0.133 Sum_probs=167.1
Q ss_pred CcEEEEE-ccCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.+++.+ .++.+++||+.. +++...+.. .+.|..+++.|+. ..|++++..
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~v~~~~~spdg--------------~~l~~~~~~------------- 94 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSSPQGVAVSPDG--------------KQVYVTNMA------------- 94 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTS--------------SEEEEEETT-------------
T ss_pred CEEEEECCCCCeEEEEECCC-CeEEEEEEC-CCCccceEECCCC--------------CEEEEEECC-------------
Confidence 3455566 567799999986 455555553 3488999988753 245555421
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEE-EE-eCCEEEEEECCCCceEEEEE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLA-Vs-~~~~I~IwDl~t~~~l~tL~ 172 (828)
.++|++||+.+++.+..+.....+.+++|+ ++.|+ ++ .+++|++||+.+++.+..+.
T Consensus 95 -------------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 95 -------------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp -------------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred -------------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 168999999999999999998899999997 55554 43 36899999999998877765
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeE
Q 003336 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (828)
Q Consensus 173 t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~ 252 (828)
.+.. + .-+++.. ++..+
T Consensus 156 ~~~~---------------~-----~~~~~~~---------------------------dg~~l---------------- 172 (391)
T 1l0q_A 156 VGRS---------------P-----KGIAVTP---------------------------DGTKV---------------- 172 (391)
T ss_dssp CCSS---------------E-----EEEEECT---------------------------TSSEE----------------
T ss_pred cCCC---------------c-----ceEEECC---------------------------CCCEE----------------
Confidence 4311 1 1122321 11100
Q ss_pred eccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003336 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (828)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd 332 (828)
++.+..+|.|++||+.+++.+..+.. ...+.+++|+|+
T Consensus 173 -----------------------------------------~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 210 (391)
T 1l0q_A 173 -----------------------------------------YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE 210 (391)
T ss_dssp -----------------------------------------EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred -----------------------------------------EEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC
Confidence 11234568999999999998887764 467899999999
Q ss_pred CCEEEEEe---cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEE-EEEeCCCcEEEEe
Q 003336 333 GILLVTAS---VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFA 408 (828)
Q Consensus 333 G~lLATaS---~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L-As~S~DGTVhIwd 408 (828)
|++|++++ .+++ |++||+.++ ..+..+..+ ..+.+++|+||+++| ++++.|++|+|||
T Consensus 211 g~~l~~~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNT-VSMIDTGTN--------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp SSEEEEEEECSSCCE-EEEEETTTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCcCCCc-EEEEECCCC--------------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999988 5666 899999875 344455432 248899999999988 5668899999999
Q ss_pred cCCCCCceeeccCC
Q 003336 409 INPLGGSVNFQPTD 422 (828)
Q Consensus 409 l~~~gg~~~~~~H~ 422 (828)
+........+..|.
T Consensus 273 ~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 273 TATNTITATMAVGK 286 (391)
T ss_dssp TTTTEEEEEEECSS
T ss_pred CCCCcEEEEEECCc
Confidence 98865555566554
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.4e-18 Score=202.83 Aligned_cols=248 Identities=14% Similarity=0.179 Sum_probs=166.4
Q ss_pred CcEEEEEccCCeEEEEecCC-CceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~-~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
+.+++.+.++.++|||+... ......+..|.++|.++++.|... ..+|+.++. |
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~------------~~~l~s~s~----------D--- 76 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF------------GTILASCSY----------D--- 76 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS------------CSEEEEEET----------T---
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC------------CCEEEEEeC----------C---
Confidence 34555556666999999842 234455667999999999987420 125555542 1
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCce-
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEI- 167 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~~- 167 (828)
++|++||+.+++ .+..+. +...|.+++|+ ++++++ +.++.|++||+.+...
T Consensus 77 --------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 77 --------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 679999999997 555555 46799999997 456665 6678999999998742
Q ss_pred -EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 168 -l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
...+..++. ++ ..+++.... ..+ .+...
T Consensus 137 ~~~~~~~~~~---------------~v----~~l~~~p~~-------------~~~---------~~~~~---------- 165 (753)
T 3jro_A 137 SPIIIDAHAI---------------GV----NSASWAPAT-------------IEE---------DGEHN---------- 165 (753)
T ss_dssp CCEEEECCSS---------------CE----EEEEECCCC----------------------------------------
T ss_pred ceeEeecCCC---------------ce----EEEEecCcc-------------ccc---------ccccc----------
Confidence 333333321 01 123333100 000 00000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC----cEEEEeccCCC
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHKS 322 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~----~~i~~f~aH~~ 322 (828)
..++ ...++++..+|.|+|||+.++ .++..+.+|..
T Consensus 166 ---------------------------------~~~d-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 166 ---------------------------------GTKE-------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp ----------------------------------CGG-------GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ---------------------------------cCCC-------CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 0000 012455678899999999876 67788999999
Q ss_pred CeEEEEEcCC---CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 323 PISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 323 pIsaLaFSPd---G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
+|.+|+|+|+ |++|++++.||+ |+|||+..+.. . ....+... .++ ...|.+++|+|||++|++++
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~~-~--------~~~~~~~~-~~~-~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQG-P--------WKKTLLKE-EKF-PDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSSS-C--------CBCCBSSS-SCC-SSCCCCEEECTTTCCEEEEC
T ss_pred cEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCCC-c--------ceeEEecc-CCC-CCceEEEEEcCCCCEEEEEc
Confidence 9999999999 999999999998 89999987510 0 00011111 122 24599999999999999999
Q ss_pred CCCcEEEEecCCCC
Q 003336 400 SRGTSHLFAINPLG 413 (828)
Q Consensus 400 ~DGTVhIwdl~~~g 413 (828)
.||+|+||++...+
T Consensus 274 ~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 274 GDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCCC
Confidence 99999999998644
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.78 E-value=1.9e-17 Score=174.16 Aligned_cols=222 Identities=15% Similarity=0.183 Sum_probs=160.0
Q ss_pred cEEEEEccCCeEEEEe-cCCCceeEeeee--ecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 19 RVLLLGYRSGFQVWDV-EEADNVHDLVSR--YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 19 ~vLl~Gy~~G~qVWdv-~~~~~~~ellS~--hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
.+++.+.++.+++||+ +. +.. ..+.. |.++|.++++.| + .+|+.++.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~--------------~~l~s~~~------------- 120 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D--------------DKLIAASW------------- 120 (342)
T ss_dssp EEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred EEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C--------------CEEEEEcC-------------
Confidence 4555556667999999 76 334 55666 999999999987 3 24554442
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCC---------CcEEEEEeCCCCEEEEEEcCCEEEE-EeCCEEEEEECCC-
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS---------QSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAAT- 164 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T---------g~~V~tL~f~s~V~sV~~S~riLAV-s~~~~I~IwDl~t- 164 (828)
+++|++||+++ ++++.++.+...|.++++++..+++ +.++.|++||+.+
T Consensus 121 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 121 --------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp --------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred --------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcc
Confidence 17899999998 8888888888999999998665655 6677999999998
Q ss_pred CceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003336 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (828)
Q Consensus 165 ~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ss 244 (828)
++........+. .. ++ +.+++... . +
T Consensus 181 ~~~~~~~~~~~~------------~~-~i----~~i~~~~~------------~--------------~----------- 206 (342)
T 1yfq_A 181 EDDNGTIEESGL------------KY-QI----RDVALLPK------------E--------------Q----------- 206 (342)
T ss_dssp TTCCCEEEECSC------------SS-CE----EEEEECSG------------G--------------G-----------
T ss_pred ccccceeeecCC------------CC-ce----eEEEECCC------------C--------------C-----------
Confidence 654222211110 00 00 11222200 0 0
Q ss_pred cceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEec
Q 003336 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFR 318 (828)
Q Consensus 245 k~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~------~~i~~f~ 318 (828)
..++.+..+|.|+|||+... +.+..|+
T Consensus 207 -----------------------------------------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 207 -----------------------------------------------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp -----------------------------------------------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred -----------------------------------------------CEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 01233456889999999887 8888999
Q ss_pred cCCC---------CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEc
Q 003336 319 AHKS---------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (828)
Q Consensus 319 aH~~---------pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 389 (828)
+|.. +|.+++|+|+|++|++++.||+ |+|||+.++ ..+..+. ++....|.+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~-~~h~~~v~~~~-- 301 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR--------------KKIKNFA-KFNEDSVVKIA-- 301 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEECC-CCSSSEEEEEE--
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccH--------------hHhhhhh-cccCCCceEec--
Confidence 9866 9999999999999999999998 899999876 4555663 44234699999
Q ss_pred cCCCEEEEEeCCCc-EEEEec
Q 003336 390 DDSNWIMISSSRGT-SHLFAI 409 (828)
Q Consensus 390 pDg~~LAs~S~DGT-VhIwdl 409 (828)
||+++|++++.||+ .+.|..
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSSS
T ss_pred CCCCeEEEEecCCcccccccc
Confidence 99999999999999 666664
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.78 E-value=9.9e-17 Score=176.95 Aligned_cols=228 Identities=16% Similarity=0.237 Sum_probs=155.7
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 117 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
++|+|||+.+|++++.+.+ ...|.+|+|+ +++||+ +.+++|+|||+.++++++++..|... .
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------e
Confidence 7899999999999998875 3479999997 677777 56789999999999999998877431 2
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
..++..++.|+.++... .+..+..........- ..++... + +....
T Consensus 193 ~~~s~~~~~l~sgs~d~---------------------------~i~~~d~~~~~~~~~~--~~~h~~~--~--~~~~~- 238 (420)
T 4gga_A 193 GSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVAT--LSGHSQE--V--CGLRW- 238 (420)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEEE--EECCSSC--E--EEEEE-
T ss_pred EEEeeCCCEEEEEeCCC---------------------------ceeEeeecccceeeEE--ecccccc--e--eeeee-
Confidence 23555556666553221 1111111110000000 0011100 0 00000
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCC-CEEEEE--ecCC
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSG-ILLVTA--SVQG 343 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~----~i~~f~aH~~pIsaLaFSPdG-~lLATa--S~DG 343 (828)
.+. | ..++++..||.|+|||+.+++ .+..+..|..+|.+++|+|++ .+|+++ +.||
T Consensus 239 ----------~~~----g---~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 239 ----------APD----G---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp ----------CTT----S---SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred ----------cCC----C---CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 011 1 135567789999999998764 467788999999999999964 566664 5788
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe--CCCcEEEEecCCCCCceeeccC
Q 003336 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 344 t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S--~DGTVhIwdl~~~gg~~~~~~H 421 (828)
+ |+|||+.++ ..+..+.. ...|.+++|+|+++.|++++ .|++|+|||+.+......+++|
T Consensus 302 ~-I~iwd~~t~--------------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH 363 (420)
T 4gga_A 302 H-IRIWNVCSG--------------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363 (420)
T ss_dssp E-EEEEETTTT--------------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred E-EEEEeCCcc--------------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence 7 899999886 34445532 23589999999999999876 7999999999988777889999
Q ss_pred CCCC
Q 003336 422 DANF 425 (828)
Q Consensus 422 ~~~~ 425 (828)
...+
T Consensus 364 ~~~V 367 (420)
T 4gga_A 364 TSRV 367 (420)
T ss_dssp SSCE
T ss_pred CCCE
Confidence 7643
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.78 E-value=4.1e-17 Score=169.08 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=82.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-------------cCCCCeEEEEEcCC---CCEEEEEecCCCEEEEEeCCCCCCCC
Q 003336 295 PDADNVGMVIVRDIVSKNVIAQFR-------------AHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGT 358 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~i~~f~-------------aH~~pIsaLaFSPd---G~lLATaS~DGt~I~IWdi~~~~~~~ 358 (828)
+++..+|.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+...+
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~---- 202 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDG---- 202 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTS----
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCC----
Confidence 345678999999999877555443 68899999999997 999999999987 666666543
Q ss_pred CCccCCCCceeEEEEEecCCccccEEEEEEccCC----CEEEEEeCCCcEEEEecCCCCC
Q 003336 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 359 ~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----~~LAs~S~DGTVhIwdl~~~gg 414 (828)
....+..+ .++. ..|.+++|+|++ ++|++++.||+|+|||+.....
T Consensus 203 --------~~~~~~~~-~~h~-~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 203 --------KLHVAAKL-PGHK-SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp --------CEEEEEEC-CCCC-SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred --------ceeeeeec-CCCC-cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 22334444 3443 459999999998 8999999999999999986533
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.78 E-value=1.7e-16 Score=164.69 Aligned_cols=229 Identities=15% Similarity=0.200 Sum_probs=150.4
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 117 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
++|+|||+.+|++++++++ ...|.+|+|+ +++||+ +.+++|++||+.++++++++..|... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------~ 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------E
Confidence 7899999999999999975 3479999997 567776 66889999999999999999877431 1
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
..++..++.|+.++... .+..+.......... ...++..... +.
T Consensus 113 ~~~~~~~~~l~s~~~~~---------------------------~~~~~~~~~~~~~~~--~~~~~~~~~~----~~--- 156 (318)
T 4ggc_A 113 GSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVA--TLSGHSQEVC----GL--- 156 (318)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEE--EEECCSSCEE----EE---
T ss_pred EEeecCCCEEEEEecCC---------------------------ceEeeecCCCceeEE--EEcCccCceE----EE---
Confidence 12344445555543211 111111110000000 0001110000 00
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCC-EE--EEEecCC
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGI-LL--VTASVQG 343 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~----~i~~f~aH~~pIsaLaFSPdG~-lL--ATaS~DG 343 (828)
...+. ...++++..||.|+|||+.+++ .+.....|..+|.+++|+|++. ++ ++++.++
T Consensus 157 --------~~~~~-------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 157 --------RWAPD-------GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp --------EECTT-------SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred --------EEcCC-------CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 00010 1235677889999999998865 3456678889999999999765 33 4566777
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe--CCCcEEEEecCCCCCceeeccC
Q 003336 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 344 t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S--~DGTVhIwdl~~~gg~~~~~~H 421 (828)
+ |+|||.... ....... ....|..++|+|+++++++++ .|++|+|||+.+......+++|
T Consensus 222 ~-i~lwd~~~~--------------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 222 H-IRIWNVCSG--------------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp E-EEEEETTTC--------------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred E-EEEEecccc--------------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 6 899998875 1222221 123599999999999988766 7999999999988777889998
Q ss_pred CCCCC
Q 003336 422 DANFT 426 (828)
Q Consensus 422 ~~~~~ 426 (828)
...+.
T Consensus 284 ~~~V~ 288 (318)
T 4ggc_A 284 TSRVL 288 (318)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 76443
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.77 E-value=4.6e-16 Score=169.99 Aligned_cols=224 Identities=10% Similarity=0.076 Sum_probs=162.9
Q ss_pred CcEEEEEcc-CCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+|+.+.. +.+++||++. +.....+..|...+.++.+.|+. ..|++++..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~------------- 232 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIR--------------DLVYCSNWI------------- 232 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTT--------------TEEEEEETT-------------
T ss_pred CEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCC--------------CEEEEEecC-------------
Confidence 566666654 5699999986 45556666778899999998742 244444321
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe---------CCEEEEEECCCC
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ---------AAQVHCFDAATL 165 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~---------~~~I~IwDl~t~ 165 (828)
.++|++||+++++.+..+.....+..++++ ++.|+++. +++|++||+.++
T Consensus 233 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 233 -------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp -------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred -------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 168999999999999999888889999996 55676644 679999999998
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.+..+... . .++.+++.. ++..
T Consensus 294 ~~~~~~~~~-~-------------------~~~~~~~~~---------------------------~g~~---------- 316 (433)
T 3bws_A 294 KLIDTIGPP-G-------------------NKRHIVSGN---------------------------TENK---------- 316 (433)
T ss_dssp EEEEEEEEE-E-------------------CEEEEEECS---------------------------STTE----------
T ss_pred cEEeeccCC-C-------------------CcceEEECC---------------------------CCCE----------
Confidence 766554211 0 011233321 1110
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIs 325 (828)
.++++..++.|++||+.+++.+..+. |...+.
T Consensus 317 -----------------------------------------------l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 317 -----------------------------------------------IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp -----------------------------------------------EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred -----------------------------------------------EEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 01223457899999999999888886 677899
Q ss_pred EEEEcCCCCEEEEEec---------------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc
Q 003336 326 ALCFDPSGILLVTASV---------------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (828)
Q Consensus 326 aLaFSPdG~lLATaS~---------------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 390 (828)
+++|+|+|++|++++. ||+ |++||+.++ ..+..+.. ...+.+++|+|
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~s~ 410 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTD--------------TVKEFWEA---GNQPTGLDVSP 410 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECT
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCC--------------cEEEEecC---CCCCceEEEcC
Confidence 9999999999998887 455 899999875 34444432 23589999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCC
Q 003336 391 DSNWIMISSS-RGTSHLFAINP 411 (828)
Q Consensus 391 Dg~~LAs~S~-DGTVhIwdl~~ 411 (828)
||++|++++. |++|+||+++.
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
No 108
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.77 E-value=9.9e-17 Score=175.56 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=156.2
Q ss_pred CCCEEEEEECCCCcEEEEEeC--CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~ 189 (828)
..++|++||+.+++.+..+.. ...|.+|+|+ +++|++ +.++.|++||+.+++.+.++..|...
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------ 178 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------ 178 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------
Confidence 348999999999999998886 6789999997 567776 45889999999999999888766421
Q ss_pred cceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccc
Q 003336 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (828)
Q Consensus 190 ~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~ 269 (828)
+..+++.+++|+.++.. ..+..|.....+....-+ .++.
T Consensus 179 v~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~--~~~~------------ 217 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRS---------------------------GAIHHHDVRIANHQIGTL--QGHS------------ 217 (401)
T ss_dssp EEEEEEETTEEEEEETT---------------------------SEEEEEETTSSSCEEEEE--ECCS------------
T ss_pred eEEEEECCCEEEEEcCC---------------------------CCEEEEecccCcceeeEE--cCCC------------
Confidence 22355556666665321 122222222111110000 0000
Q ss_pred cCCCCCCccc--ccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe--cCCC
Q 003336 270 LPDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS--VQGH 344 (828)
Q Consensus 270 ~p~~~~si~s--a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG-~lLATaS--~DGt 344 (828)
+.+.. .+++ + ..+++++.+|.|+|||+.+++++..+..|..+|.+++|+|+| .+|++++ .||+
T Consensus 218 -----~~v~~~~~~~~----~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 218 -----SEVCGLAWRSD----G---LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp -----SCEEEEEECTT----S---SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred -----CCeeEEEEcCC----C---CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 00000 0111 1 235677889999999999999999999999999999999976 5777765 6887
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe--CCCcEEEEecCCCCCce--eecc
Q 003336 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSV--NFQP 420 (828)
Q Consensus 345 ~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S--~DGTVhIwdl~~~gg~~--~~~~ 420 (828)
|++||+.++ ..+..+.. ...|.+++|+||+++|++++ .||+|+||++....... .+.+
T Consensus 286 -i~i~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 286 -IHFWNAATG--------------ARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp -EEEEETTTC--------------CEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred -EEEEECCCC--------------CEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 899999875 34445532 24599999999999999955 89999999998743333 3456
Q ss_pred CCCC
Q 003336 421 TDAN 424 (828)
Q Consensus 421 H~~~ 424 (828)
|...
T Consensus 348 h~~~ 351 (401)
T 4aez_A 348 HDTR 351 (401)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.77 E-value=1.9e-17 Score=182.09 Aligned_cols=257 Identities=12% Similarity=0.082 Sum_probs=135.3
Q ss_pred EEEEEccCCeEEEEecCCCcee----EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 20 VLLLGYRSGFQVWDVEEADNVH----DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 20 vLl~Gy~~G~qVWdv~~~~~~~----ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
+...+.++.++|||+....... ..+..|.+.|..+++.|...... . ..-.+||-++.
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~-~-----~d~~~las~s~------------- 164 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADN-R-----LAEQVIASVGD------------- 164 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTC-S-----EEEEEEEEEET-------------
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccccc-C-----CCCCEEEEEEC-------------
Confidence 3444556779999998732211 12457999999999987321100 0 01125554442
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEE-EEeCCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVH-MLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYA 170 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~-tL~f~s~V~sV~~S~---riLAV-s~~~~I~IwDl~t~~~l~t 170 (828)
+++|+|||++++..+. .+.+.++|.+|+|++ ++|++ +.+++|++||+.+.+....
T Consensus 165 --------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 165 --------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp --------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred --------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 2899999998876655 456789999999973 45665 5688999999999887665
Q ss_pred EEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 171 L~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
+..++.... ... +.......... . ........+..
T Consensus 225 ~~~~~~~~~------------~~~-----~s~~~~~~~~~---------~-------~~~~~~~~v~~------------ 259 (393)
T 4gq1_A 225 NSQTELVKN------------PWL-----LTLNTLPLVNT---------C-------HSSGIASSLAN------------ 259 (393)
T ss_dssp ------CSC------------CCS-----EEEESGGGC----------------------CCSSSCSE------------
T ss_pred ccccCCccc------------ceE-----Eecccccceee---------e-------eccccccccee------------
Confidence 544321100 000 00110000000 0 00000000000
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFS 330 (828)
+....++ | ..++++..++.|+|||+.+++....+..|...+..+.|.
T Consensus 260 --------------------------v~~~~~d----g---~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 260 --------------------------VRWIGSD----G---SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp --------------------------EEEETTT----T---CEEEEECTTSEEEEEEC-------------------CCS
T ss_pred --------------------------eeeecCC----C---CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 0000010 1 124566788999999999888777777776666655544
Q ss_pred C--------------------CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc
Q 003336 331 P--------------------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (828)
Q Consensus 331 P--------------------dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 390 (828)
| ++.++++++.||+ |+|||+.++ ..+..+.. +. ..|.+|+|||
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~--------------~~~~~~~~-~~-~~V~svafsp 369 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTYEK--------------DSNSIPIQ-LG-MPIVDFCWHQ 369 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETTCT--------------TCCEEEEE-CS-SCEEEEEECT
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECCCC--------------cEEEEecC-CC-CcEEEEEEcC
Confidence 4 3446788889997 899999876 11222322 22 3599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 003336 391 DSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 391 Dg~~LAs~S~DGTVhIwdl~~ 411 (828)
||++||+++.+| +.||++.-
T Consensus 370 dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEeCCC-eEEEEEeC
Confidence 999999998776 66666643
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.77 E-value=5e-17 Score=177.44 Aligned_cols=233 Identities=13% Similarity=0.185 Sum_probs=160.3
Q ss_pred CcEEEEEccC-CeEEEEecCCC------ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcc
Q 003336 18 RRVLLLGYRS-GFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (828)
Q Consensus 18 ~~vLl~Gy~~-G~qVWdv~~~~------~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~ 90 (828)
..+|+.|..+ .++|||+...+ .....+..|.+.|.++++.|+. ..+|+.++.
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-------------~~~l~s~~~-------- 152 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-------------QNVLLSAGC-------- 152 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------------TTEEEEEET--------
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------------CCEEEEEcC--------
Confidence 4566666544 59999998743 3455667799999999998752 125554442
Q ss_pred ccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCC
Q 003336 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (828)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~---f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t 164 (828)
| ++|++||+++++.+.++. +...|.+++|+ +++|++ +.+++|++||+.+
T Consensus 153 --d-----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 153 --D-----------------------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp --T-----------------------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred --C-----------------------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 1 679999999999999993 57799999996 555555 6788999999999
Q ss_pred CceEEEE-EcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc
Q 003336 165 LEIEYAI-LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (828)
Q Consensus 165 ~~~l~tL-~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~s 243 (828)
++.+.++ ..+... . + ..++|.. ++..+
T Consensus 208 ~~~~~~~~~~~~~~-----------~--~-----~~~~~~~---------------------------~~~~l------- 235 (402)
T 2aq5_A 208 GTVVAEKDRPHEGT-----------R--P-----VHAVFVS---------------------------EGKIL------- 235 (402)
T ss_dssp TEEEEEEECSSCSS-----------S--C-----CEEEECS---------------------------TTEEE-------
T ss_pred CceeeeeccCCCCC-----------c--c-----eEEEEcC---------------------------CCcEE-------
Confidence 9988887 344210 0 0 1122221 11110
Q ss_pred ccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE-EEEec-cCC
Q 003336 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFR-AHK 321 (828)
Q Consensus 244 sk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~-i~~f~-aH~ 321 (828)
+.| .+...+|.|+|||+.+++. +..+. .|.
T Consensus 236 ----~~g--------------------------------------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 236 ----TTG--------------------------------------------FSRMSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp ----EEE--------------------------------------------ECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred ----EEe--------------------------------------------ccCCCCceEEEEcCccccCCceEEeccCC
Confidence 000 0014678999999998654 44443 577
Q ss_pred CCeEEEEEcCCCCEEEE-EecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 322 SPISALCFDPSGILLVT-ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLAT-aS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
..|.+++|+|+|++|++ ++.||+ |+|||+..+.. ....+..+ . ....|.+++|+||+.++++ .
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~----------~~~~l~~~-~--~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAP----------FLHYLSMF-S--SKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTT----------CEEEEEEE-C--CSSCCSEEEECCGGGSCGG--G
T ss_pred CceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCc----------ceEeeccc-c--cCCcccceEEeccccccee--c
Confidence 88999999999999975 556887 89999987510 02222222 1 2345999999999999874 6
Q ss_pred CCcEEEEecCCC
Q 003336 401 RGTSHLFAINPL 412 (828)
Q Consensus 401 DGTVhIwdl~~~ 412 (828)
++++++|++.+.
T Consensus 332 ~~~~~~~~l~~~ 343 (402)
T 2aq5_A 332 CEIARFYKLHER 343 (402)
T ss_dssp TEEEEEEEEETT
T ss_pred ceeEEEEEcCCC
Confidence 779999999874
No 111
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.76 E-value=1.7e-17 Score=184.23 Aligned_cols=269 Identities=12% Similarity=0.134 Sum_probs=157.9
Q ss_pred CcEEEEEc-cCCeEEEEecCCCceeEee--eeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADNVHDLV--SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ell--S~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
..+|+.|. ++.++|||++... ...++ ..|.++|.+|+|.|.. ..+|+.++. |
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~-~~~~~~~~gH~~~V~~l~f~p~~-------------~~~l~s~s~----------D- 186 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKD-KPTFIKGIGAGGSITGLKFNPLN-------------TNQFYASSM----------E- 186 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCS-CCEEECCCSSSCCCCEEEECSSC-------------TTEEEEECS----------S-
T ss_pred CCEEEEEeCCCEEEEEECCCCC-ceeEEEccCCCCCEEEEEEeCCC-------------CCEEEEEeC----------C-
Confidence 34565555 5559999998643 33333 3589999999998731 024443332 2
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l 168 (828)
++|++||++++........ ...+.+++|+ +++|++ +.++.|++||+.+ +.+
T Consensus 187 ----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 187 ----------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp ----------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred ----------------------CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 7899999987755443333 2357788886 667776 5678999999864 445
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeecc---ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~---r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
.++..|.. .+..++++| .+||.++. +..|.-|-....+
T Consensus 244 ~~~~~h~~------------~v~~v~~~p~~~~~~~s~s~---------------------------d~~v~iwd~~~~~ 284 (435)
T 4e54_B 244 WNLRMHKK------------KVTHVALNPCCDWFLATASV---------------------------DQTVKIWDLRQVR 284 (435)
T ss_dssp CCSBCCSS------------CEEEEEECTTCSSEEEEEET---------------------------TSBCCEEETTTCC
T ss_pred EEEecccc------------eEEeeeecCCCceEEEEecC---------------------------cceeeEEeccccc
Confidence 55555432 122344433 23443321 1112111111111
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCccc-ccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC-
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP- 323 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~s-a~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~p- 323 (828)
....-+...++. ..+.. ++. .+| ..+++++.||.|+|||+.++..+..+..|...
T Consensus 285 ~~~~~~~~~~h~-----------------~~v~~~~~s---pdg---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 285 GKASFLYSLPHR-----------------HPVNAACFS---PDG---ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp SSSCCSBCCBCS-----------------SCEEECCBC---TTS---SEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred ccceEEEeeecc-----------------ccccceeEC---CCC---CeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 000000000000 00110 011 011 23567889999999999999888888777531
Q ss_pred -----eEEEEEcCCCCEEEEEec-----------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEE-
Q 003336 324 -----ISALCFDPSGILLVTASV-----------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI- 386 (828)
Q Consensus 324 -----IsaLaFSPdG~lLATaS~-----------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sI- 386 (828)
+..++|+|++.++++++. ++..|+|||+.++ ..+..+..++. ..|.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--------------~~~~~l~~~~~-~~v~s~~ 406 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG--------------KMMCQLYDPES-SGISSLN 406 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC--------------CEEEEECCSSC-CCCCCEE
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC--------------cEEEEEeCCCC-CcEEEEE
Confidence 234567777777766642 3345899999876 45566655554 347776
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 387 SFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 387 aFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+|||||++||+++ |++|+||++.+.
T Consensus 407 ~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 407 EFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EECCCCCEEEEEc-CCcEEEEECCcC
Confidence 6999999999876 789999999875
No 112
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.76 E-value=3.3e-16 Score=164.08 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=153.3
Q ss_pred eeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEE
Q 003336 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (828)
Q Consensus 40 ~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (828)
++..|..|.++|.+|++.|+. ..+|+-++. | ++|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~-------------~~~l~S~s~----------D-----------------------~~i 63 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQF-------------PDMILSASR----------D-----------------------KTI 63 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTC-------------TTEEEEEET----------T-----------------------SCE
T ss_pred EEEEECCccCCEEEEEEeCCC-------------CCEEEEEcC----------C-----------------------CeE
Confidence 344567899999999998841 125554442 2 789
Q ss_pred EEEECCCCc-----EEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 120 HFYSLRSQS-----YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 120 rlWDL~Tg~-----~V~tL~f-~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
+|||+.+++ ++++++. ...|.+++|+ +++|++ +.++.|++|+............+...
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------- 130 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------- 130 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence 999997754 4556654 6799999997 566665 67889999999988766555432110
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
.. .+.+.. .+
T Consensus 131 --~~----~~~~~~---------------------------~~------------------------------------- 140 (340)
T 4aow_A 131 --VL----SVAFSS---------------------------DN------------------------------------- 140 (340)
T ss_dssp --EE----EEEECT---------------------------TS-------------------------------------
T ss_pred --ee----EEEEee---------------------------cC-------------------------------------
Confidence 00 001110 00
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCCC--CEEEEEecCCCEEE
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSG--ILLVTASVQGHNIN 347 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~-i~~f~aH~~pIsaLaFSPdG--~lLATaS~DGt~I~ 347 (828)
..++++..+|.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |+
T Consensus 141 ---------------------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~ 198 (340)
T 4aow_A 141 ---------------------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VK 198 (340)
T ss_dssp ---------------------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EE
T ss_pred ---------------------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EE
Confidence 0133456788999999987654 44567999999999999875 57899999998 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
+||+..+ ..+..+ .++. ..|.+|+|+||+++|++++.||+|+|||+........+..|
T Consensus 199 i~d~~~~--------------~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 199 VWNLANC--------------KLKTNH-IGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEETTTT--------------EEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred EEECCCC--------------ceeeEe-cCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9999875 344444 4554 45999999999999999999999999999876555555443
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.76 E-value=6e-17 Score=177.09 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=87.3
Q ss_pred ccccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEEcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCC
Q 003336 294 FPDADNVGMVIVRDIVS-KNVIA-------QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s-~~~i~-------~f~aH~~pIsaLaFSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~ 364 (828)
++++ .||.|+|||+.+ ++.+. .+.+|...|.+++|+|+| ++||+|+.||+ |+|||+..+....
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~------ 263 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCD------ 263 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSC------
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcccc------
Confidence 4556 799999999994 44554 367999999999999999 99999999998 8999998761100
Q ss_pred CCceeEEEEEecCCcc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEecCC-CCCceeeccCC
Q 003336 365 GTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNFQPTD 422 (828)
Q Consensus 365 ~~~~~~l~~L~RG~t~-----------a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~-~gg~~~~~~H~ 422 (828)
.++..+ .++.. ..|.+++|+||+++|++++. ++|+|||+.. ......+..|.
T Consensus 264 ----~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 264 ----RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp ----TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred ----ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 001223 22221 25999999999999999999 9999999986 44455666664
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.8e-17 Score=196.85 Aligned_cols=199 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred eecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECC
Q 003336 46 RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR 125 (828)
Q Consensus 46 ~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~ 125 (828)
.|.+.|.++++.|+. .+||.++. +++|+|||..
T Consensus 15 gh~~~V~~lafspdg--------------~~lAsgs~---------------------------------Dg~I~lw~~~ 47 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQ--------------NLLAIATV---------------------------------TGEVHIYGQQ 47 (902)
T ss_dssp ECSSCEEEEEEETTT--------------TEEEEEET---------------------------------TSEEEEECST
T ss_pred CCCCCcEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEEEeCC
Confidence 578999999999853 26765543 1789999999
Q ss_pred CCcEEEEEeCCCCEEEEEEc-CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEe
Q 003336 126 SQSYVHMLKFRSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYS 203 (828)
Q Consensus 126 Tg~~V~tL~f~s~V~sV~~S-~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya 203 (828)
+++++..+.+..+|.+|+|+ +++|++ +.+++|++||+.+++++.++. ++. .+ ..++|.
T Consensus 48 ~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~---------------~V----~~v~~s 107 (902)
T 2oaj_A 48 QVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG---------------KI----TSIDTD 107 (902)
T ss_dssp TCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSS---------------CE----EEEECC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCC---------------CE----EEEEEC
Confidence 99988887778899999997 564554 678899999999999887774 211 01 112222
Q ss_pred CCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCC
Q 003336 204 GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG 283 (828)
Q Consensus 204 ~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~ 283 (828)
. ++.
T Consensus 108 p---------------------------~g~------------------------------------------------- 111 (902)
T 2oaj_A 108 A---------------------------SLD------------------------------------------------- 111 (902)
T ss_dssp T---------------------------TCS-------------------------------------------------
T ss_pred C---------------------------CCC-------------------------------------------------
Confidence 1 111
Q ss_pred CCCCCccCCcccccCCCCeEEEEECCCCcEE-----------EEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeC
Q 003336 284 GKSNGTVNGHFPDADNVGMVIVRDIVSKNVI-----------AQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKI 351 (828)
Q Consensus 284 ~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i-----------~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi 351 (828)
.++.+..+|.|+|||+.+++.. ..+++|..+|.+|+|+|+ +.+|++|+.||+ | |||+
T Consensus 112 ---------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~-v-lWd~ 180 (902)
T 2oaj_A 112 ---------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT-L-TYSL 180 (902)
T ss_dssp ---------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE-E-EEET
T ss_pred ---------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc-E-EEEC
Confidence 1223456899999999988764 235689999999999996 579999999997 8 9999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEecCC-----------------ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 352 IPGILGTSSACDAGTSYVHLYRLQRGL-----------------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~L~RG~-----------------t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
..+ ..+..+. ++ ....|.+++|+|||++||+++.||+|+|||+....
T Consensus 181 ~~~--------------~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 181 VEN--------------EIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp TTT--------------EEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred CCC--------------ceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 875 3333432 21 12359999999999999999999999999998743
No 115
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.2e-17 Score=193.12 Aligned_cols=116 Identities=10% Similarity=0.020 Sum_probs=93.0
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEE--EEcCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 294 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISAL--CFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~-~~i~~f~aH~~pIsaL--aFSPdG-~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++++..||+|+|||+.++ .++..+.+|..+|.+| +|+|+| ++|||||.||+ |+|||++.+ .
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~~--------------~ 344 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKDI--------------A 344 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGGH--------------H
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCCC--------------C
Confidence 456678999999999976 4566799999999999 689998 99999999998 899999864 1
Q ss_pred EEEEEecCCcc-ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCC
Q 003336 370 HLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (828)
Q Consensus 370 ~l~~L~RG~t~-a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~~~ 425 (828)
.+..+. ++.. ..|.+|+|+||++.||+++.|++|+|||+.......++.+|...+
T Consensus 345 ~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V 400 (524)
T 2j04_B 345 TTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTI 400 (524)
T ss_dssp HHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCE
T ss_pred cccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCce
Confidence 111221 2221 237899999999999999999999999999877777888886543
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.74 E-value=2.4e-16 Score=166.00 Aligned_cols=261 Identities=11% Similarity=0.067 Sum_probs=158.9
Q ss_pred ceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCE
Q 003336 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (828)
Q Consensus 39 ~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (828)
...+++..|.+.|.++++.|+.. ...+|+.++. +++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~-----------~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTL-----------PGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTS-----------SSEEEEEEET---------------------------------TSE
T ss_pred ceeEeccCCCCceEEEEEcCCCC-----------CceEEEEECC---------------------------------CCc
Confidence 45567788999999999987410 0125554442 178
Q ss_pred EEEEECCC-CcEE-EEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 119 VHFYSLRS-QSYV-HMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 119 VrlWDL~T-g~~V-~tL~-f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
|++||+.+ ++.+ ..+. +...|.+++|+ +++|++ +.++.|++||+.+.+.+.. ..|.. .+..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~------------~v~~ 132 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDA------------PVKT 132 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSS------------CEEE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-ccccC------------ceEE
Confidence 99999998 6655 5554 57799999996 556665 5688999999999987654 33422 1122
Q ss_pred eee--cc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccc
Q 003336 193 LAV--GP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (828)
Q Consensus 193 iAl--g~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~ 268 (828)
+++ ++ ++|+.++.. ..+.-|.....+.+.. +. ..
T Consensus 133 ~~~~~~~~~~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~-~~--~~------------ 170 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWD---------------------------KTLKFWDTRSSNPMMV-LQ--LP------------ 170 (368)
T ss_dssp EEEEECSSCEEEEEEETT---------------------------SEEEEECSSCSSCSEE-EE--CS------------
T ss_pred EEEEeCCCCCEEEEccCC---------------------------CcEEEEECCCCcEEEE-Ee--cC------------
Confidence 333 22 344444211 1121121111111100 00 00
Q ss_pred ccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEE-ec-cCCCCeEEEEEcCCCCE----EEEEecC
Q 003336 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FR-AHKSPISALCFDPSGIL----LVTASVQ 342 (828)
Q Consensus 269 ~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~-f~-aH~~pIsaLaFSPdG~l----LATaS~D 342 (828)
......... ...++.+..++.+++||+........ +. .+...+.++++.+++.. |++++.|
T Consensus 171 ------~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 171 ------ERCYCADVI-------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp ------SCEEEEEEE-------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred ------CCceEEEec-------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 000000000 01123455788999999987654332 22 44567778888776665 9999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 343 Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~-----------a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|. |+|||+..... ...++.+ +++.. ..|.+++|+||+++||+++.||+|+|||+..
T Consensus 238 g~-i~i~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 238 GR-VAIHYINPPNP-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp SE-EEEEESSCSCH-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred Cc-EEEEecCCCCc-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 97 89999986410 0112223 12221 1499999999999999999999999999997
Q ss_pred CCCceeeccCCCC
Q 003336 412 LGGSVNFQPTDAN 424 (828)
Q Consensus 412 ~gg~~~~~~H~~~ 424 (828)
......+..|...
T Consensus 305 ~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 305 RTKLKTSEQLDQP 317 (368)
T ss_dssp TEEEEECCCCSSC
T ss_pred CcEEEEecCCCCC
Confidence 6666667766543
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.2e-17 Score=174.72 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=89.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE-
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL- 371 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l- 371 (828)
+++++.||.|+|||+.+++++..+. .|..+|.+++|+|||.+||+|+.||+ |+|||+..+ ..+
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~--------------~~~~ 206 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSP--------------DQAS 206 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCT--------------TSCC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------CCCc
Confidence 4456789999999999999987775 45568999999999999999999998 899999876 112
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
..+..++. ..|.+|+|+||+++|+++++ ++|+|||+........+..+
T Consensus 207 ~~~~~~h~-~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 207 SRFPVDEE-AKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp EECCCCTT-SCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCC
T ss_pred cEEeccCC-CCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccc
Confidence 34432243 46999999999999999994 59999999887655555543
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.74 E-value=1.5e-16 Score=176.62 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=85.4
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 294 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~---~~i~~f~aH~~pIsaLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++++..+|.|+|||+.++ +++..+.+|..+|.+|+|+|+|. +||+|+.||+ |+|||++.. ..
T Consensus 247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~-------------~~ 312 (430)
T 2xyi_A 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL-------------KL 312 (430)
T ss_dssp EEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT-------------TS
T ss_pred EEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC-------------CC
Confidence 345567899999999987 68888999999999999999997 7999999997 899999863 01
Q ss_pred EEEEEecCCccccEEEEEEccCCC-EEEEEeCCCcEEEEecCCCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S~DGTVhIwdl~~~g 413 (828)
.+..+. ++. ..|.+|+|+|+++ +||+++.||+|+|||+...+
T Consensus 313 ~~~~~~-~h~-~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 313 KLHSFE-SHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CSEEEE-CCS-SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CeEEee-cCC-CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 233443 332 4599999999995 69999999999999998754
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-16 Score=177.81 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=88.2
Q ss_pred cCCCCeEEEEECCCCcEEE----EeccCCCCeEEEEEcCC---CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 297 ADNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~----~f~aH~~pIsaLaFSPd---G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++.+|.|.+||+.+++... .+.+|..+|.+|+|+|+ |++|++|+.||+ |+|||+..+ .
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~--------------~ 231 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQC--------------F 231 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCT--------------T
T ss_pred EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCC--------------c
Confidence 3457899999998876544 88899999999999999 999999999998 899999865 2
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
.+..+..++. ..|.+++|+ |+++|++++.|++|+|||+........+..
T Consensus 232 ~~~~~~~~h~-~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 232 IVDKWLFGHK-HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CEEEECCCCS-SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eeeeeecCCC-CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 3344444554 459999999 999999999999999999988655555543
No 120
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.4e-16 Score=189.91 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=155.9
Q ss_pred CCcEEEEEccC-CeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCc
Q 003336 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (828)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~ 95 (828)
..++|+.|..+ .++|||... ...... ..|.++|.+++|.| . .+|+.++.
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~-~~~~~~-~~~~~~V~~l~fsp-g--------------~~L~S~s~------------- 77 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQ-VEVVIK-LEDRSAIKEMRFVK-G--------------IYLVVINA------------- 77 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTT-CEEEEE-CSSCCCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEeCCC-cEEEEE-cCCCCCEEEEEEcC-C--------------CEEEEEEC-------------
Confidence 35666666655 599999875 222222 24678999999987 2 14554442
Q ss_pred ccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEE
Q 003336 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (828)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~t~~~l~tL~ 172 (828)
+++|++||++++++++++.++..|.+++|+ +++|++ +.+++|++||+.++++. .+.
T Consensus 78 --------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~ 136 (902)
T 2oaj_A 78 --------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFK 136 (902)
T ss_dssp --------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEE
T ss_pred --------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cce
Confidence 178999999999999999999999999997 567776 56789999999988753 111
Q ss_pred cCCCcc--CCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003336 173 TNPIVM--GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (828)
Q Consensus 173 t~p~~~--~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasG 250 (828)
...... ..+.. ..+++ .-|+|..
T Consensus 137 i~~~~~~~~~~~~-----h~~~V----~sl~~sp---------------------------------------------- 161 (902)
T 2oaj_A 137 LDNLQKSSFFPAA-----RLSPI----VSIQWNP---------------------------------------------- 161 (902)
T ss_dssp ECCHHHHHTCSSS-----CCCCC----CEEEEET----------------------------------------------
T ss_pred ecccccccccccc-----CCCCe----EEEEEcc----------------------------------------------
Confidence 100000 00000 00000 1122220
Q ss_pred eEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC----------
Q 003336 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---------- 320 (828)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH---------- 320 (828)
++ .+.++.+..+|.| |||+.+++++..|..|
T Consensus 162 ---------------------~~-----------------~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 162 ---------------------RD-----------------IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp ---------------------TE-----------------EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred ---------------------CC-----------------CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 00 0012345678999 9999999999998876
Q ss_pred --------CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe--cCC------------
Q 003336 321 --------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--RGL------------ 378 (828)
Q Consensus 321 --------~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~--RG~------------ 378 (828)
..+|.+|+|+|||++||||+.||+ |+|||+.++ .......+. .++
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g------------~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSG------------HMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTC------------CEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred ccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCC------------cEEEEEeecccccCCCCCcCCCCCcc
Confidence 578999999999999999999998 899999876 111111121 011
Q ss_pred ccccEEEEEEc----cCC-CEEEEEeCC-----CcEEEEecC
Q 003336 379 TNAVIQDISFS----DDS-NWIMISSSR-----GTSHLFAIN 410 (828)
Q Consensus 379 t~a~I~sIaFS----pDg-~~LAs~S~D-----GTVhIwdl~ 410 (828)
....|.+++|+ ||+ .+|++++.| .++++|++.
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 12259999995 554 577888776 389999963
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.6e-16 Score=185.37 Aligned_cols=210 Identities=13% Similarity=0.189 Sum_probs=147.8
Q ss_pred EeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEE
Q 003336 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (828)
Q Consensus 42 ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrl 121 (828)
.++..|.++|+++++.|++ .+|+.++. +++|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg--------------~~latg~~---------------------------------dg~I~v 35 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG--------------KRLATCSS---------------------------------DKTIKI 35 (753)
T ss_dssp -----CCCCEEEECCCSSS--------------CCEEEEET---------------------------------TTEEEE
T ss_pred eecccCcceeEEEEECCCC--------------CeEEEEEC---------------------------------CCcEEE
Confidence 4667899999999988753 24554442 178999
Q ss_pred EECC--CCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEEcCCCccCCCCCCCCCcccc
Q 003336 122 YSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 122 WDL~--Tg~~V~tL~-f~s~V~sV~~S----~riLAV-s~~~~I~IwDl~t~~--~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
||+. +++.+.++. +..+|.+|+|+ +++|++ +.++.|++||+.+++ .+..+..|..
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~--------------- 100 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--------------- 100 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS---------------
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC---------------
Confidence 9998 556777776 46799999996 566666 667899999999876 3444433311
Q ss_pred eeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccC
Q 003336 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (828)
Q Consensus 192 piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p 271 (828)
++ ..+++..+. .+
T Consensus 101 ~V----~~v~~sp~~-------------------------~~-------------------------------------- 113 (753)
T 3jro_A 101 SV----NSVQWAPHE-------------------------YG-------------------------------------- 113 (753)
T ss_dssp CE----EEEEECCGG-------------------------GC--------------------------------------
T ss_pred Ce----EEEEECCCC-------------------------CC--------------------------------------
Confidence 01 112222100 00
Q ss_pred CCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcC-------------CCCEE
Q 003336 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SGILL 336 (828)
Q Consensus 272 ~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~--~~i~~f~aH~~pIsaLaFSP-------------dG~lL 336 (828)
..+++++.+|.|+|||+.++ .....+.+|..+|.+++|+| +|.+|
T Consensus 114 --------------------~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l 173 (753)
T 3jro_A 114 --------------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (753)
T ss_dssp --------------------SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred --------------------CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence 01234567899999999887 34556789999999999999 59999
Q ss_pred EEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC---CCEEEEEeCCCcEEEEecCCCC
Q 003336 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 337 ATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD---g~~LAs~S~DGTVhIwdl~~~g 413 (828)
++|+.||+ |+|||+..+.. ....+..+ .++. ..|.+++|+|+ +++|++++.||+|+|||+....
T Consensus 174 ~sgs~dg~-I~iwd~~~~~~----------~~~~~~~~-~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 174 VTGGADNL-VKIWKYNSDAQ----------TYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEETTSC-EEEEEEETTTT----------EEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEECCCe-EEEEeccCCcc----------cceeeeee-cCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 99999998 89999986510 11333344 3443 45999999999 9999999999999999998754
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.70 E-value=5.9e-15 Score=161.17 Aligned_cols=238 Identities=12% Similarity=0.101 Sum_probs=159.2
Q ss_pred CCcEEEEEccCC-eEEEEecCCCceeEe-----eeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCcc
Q 003336 17 TRRVLLLGYRSG-FQVWDVEEADNVHDL-----VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (828)
Q Consensus 17 ~~~vLl~Gy~~G-~qVWdv~~~~~~~el-----lS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~ 90 (828)
.+.+++.+..++ +++||++. ++.... +..|.+.|.++++.|+. .+++.+..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~s~~~-------- 189 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHN--------------ELWVSQMQ-------- 189 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGT--------------EEEEEEGG--------
T ss_pred CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCC--------------EEEEEECC--------
Confidence 356777766554 99999987 445442 23567889999886532 13332221
Q ss_pred ccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-E-eCCEEEEEECCCC
Q 003336 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-C-QAAQVHCFDAATL 165 (828)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-s-~~~~I~IwDl~t~ 165 (828)
+++|++||+++++.+.++.. ...+.+++|+ ++.+++ + .++.|++||+.++
T Consensus 190 -------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 190 -------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp -------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred -------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 17899999999999999874 5689999997 555544 4 4789999999999
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+.+..+..+. . + ..+++.. +|..+
T Consensus 245 ~~~~~~~~~~-------------~--~-----~~~~~~~---------------------------~g~~l--------- 268 (433)
T 3bws_A 245 LEIRKTDKIG-------------L--P-----RGLLLSK---------------------------DGKEL--------- 268 (433)
T ss_dssp EEEEECCCCS-------------E--E-----EEEEECT---------------------------TSSEE---------
T ss_pred cEEEEecCCC-------------C--c-----eEEEEcC---------------------------CCCEE---------
Confidence 8766654321 0 1 1223321 11111
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIs 325 (828)
+.+.. +. + .. ...+|.|++||+.+++.+..+ .|...+.
T Consensus 269 --~~~~~--~~-------------------------------~----~~--~~~dg~i~~~d~~~~~~~~~~-~~~~~~~ 306 (433)
T 3bws_A 269 --YIAQF--SA-------------------------------S----NQ--ESGGGRLGIYSMDKEKLIDTI-GPPGNKR 306 (433)
T ss_dssp --EEEEE--ES-------------------------------C----TT--CSCCEEEEEEETTTTEEEEEE-EEEECEE
T ss_pred --EEEEC--CC-------------------------------C----cc--ccCCCeEEEEECCCCcEEeec-cCCCCcc
Confidence 00000 00 0 00 025789999999999887766 4556899
Q ss_pred EEEEcCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC----
Q 003336 326 ALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS---- 400 (828)
Q Consensus 326 aLaFSPdG~-lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~---- 400 (828)
+++|+|+|+ ++++++.+|+ |++||+.++ ..+..+.. ...+.+++|+||+++|++++.
T Consensus 307 ~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~--------------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCCSK-IEVYDLKEK--------------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp EEEECSSTTEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCC
T ss_pred eEEECCCCCEEEEEecCCCE-EEEEECCCC--------------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCc
Confidence 999999997 5567788886 899999865 33344432 235899999999999999887
Q ss_pred -----------CCcEEEEecCCCCCceee
Q 003336 401 -----------RGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 401 -----------DGTVhIwdl~~~gg~~~~ 418 (828)
||+|++||+.+......+
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred cccccccccccceEEEEEECCCCcEEEEe
Confidence 579999999775333333
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.68 E-value=2.3e-15 Score=165.56 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=48.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCe-EEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPI-SALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~pI-saLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
++..||+|+|||+.+++++.+|++|...+ .+++|||||++|||||.||+ |||||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 45578999999999999999999998765 56999999999999999998 899996
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.67 E-value=3.6e-15 Score=163.90 Aligned_cols=204 Identities=7% Similarity=-0.033 Sum_probs=121.9
Q ss_pred CCCEEEEEECCCCcEEEEEe------CCCCEEEEEEc----------CCEEEE-EeCCEEEEEECCCCceEEEEEcCCCc
Q 003336 115 VPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS----------SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 177 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~------f~s~V~sV~~S----------~riLAV-s~~~~I~IwDl~t~~~l~tL~t~p~~ 177 (828)
.+++|+|||++++++..... +...|.+|+|+ +++||. +.|++|+|||+.+..++..+..+..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 34899999999998765321 46799999995 367776 56889999999988877777665321
Q ss_pred cCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCc
Q 003336 178 MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDL 257 (828)
Q Consensus 178 ~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~ 257 (828)
.+ -++|.+. +.
T Consensus 189 --------------v~-----~v~~~p~---------------------------~~----------------------- 199 (393)
T 4gq1_A 189 --------------GI-----SVQFRPS---------------------------NP----------------------- 199 (393)
T ss_dssp --------------EE-----EEEEETT---------------------------EE-----------------------
T ss_pred --------------cE-----EEEECCC---------------------------CC-----------------------
Confidence 11 1333310 00
Q ss_pred cceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE----------------------
Q 003336 258 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA---------------------- 315 (828)
Q Consensus 258 g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~---------------------- 315 (828)
..++++..||+|+|||+.+++...
T Consensus 200 ----------------------------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 200 ----------------------------------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp ----------------------------------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred ----------------------------------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 012234556778888877654322
Q ss_pred ---EeccCCCCeEEEEEc-CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE---EEEecCCccccEEEEEE
Q 003336 316 ---QFRAHKSPISALCFD-PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL---YRLQRGLTNAVIQDISF 388 (828)
Q Consensus 316 ---~f~aH~~pIsaLaFS-PdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l---~~L~RG~t~a~I~sIaF 388 (828)
...+|...|.+++|+ |||++|++++.|++ |+|||+..+......... ......+ ...+.......+..++|
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEeee-cCccccEEEccccccccccCcceeEEE
Confidence 234688899999997 89999999999987 899999875211100000 0000000 00000000011223445
Q ss_pred cc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003336 389 SD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 389 Sp--Dg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H~~ 423 (828)
+| |+.++++++.||+|+|||+.+......+..|..
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~ 360 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM 360 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence 44 566788899999999999998777666666643
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.67 E-value=4.6e-14 Score=156.98 Aligned_cols=238 Identities=16% Similarity=0.113 Sum_probs=158.8
Q ss_pred CcEEEEEcc------CCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccc
Q 003336 18 RRVLLLGYR------SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (828)
Q Consensus 18 ~~vLl~Gy~------~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~ 91 (828)
.+++.++.. +.+.+||++. ++. ..+..|.+.|.++++.|+. ..||.++...
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg--------------~~la~~s~~~------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG--------------SKLAYVTFES------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS--------------SEEEEEECTT-------
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC--------------CEEEEEEecC-------
Confidence 455555554 4689999974 344 4556688999999999864 2566665321
Q ss_pred cCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe----CCEEEEEECCCC
Q 003336 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ----AAQVHCFDAATL 165 (828)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~----~~~I~IwDl~t~ 165 (828)
...+|++||+++++......+...+.+++|+ ++.|+++. ...|++||+.++
T Consensus 201 -----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 201 -----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp -----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 0168999999999987766678899999997 67777533 346999999988
Q ss_pred ceEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003336 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (828)
Q Consensus 166 ~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk 245 (828)
+. ..+..+.. ... .++|+. +|..+
T Consensus 258 ~~-~~l~~~~~------------~~~-------~~~~sp---------------------------dg~~l--------- 281 (415)
T 2hqs_A 258 QI-RQVTDGRS------------NNT-------EPTWFP---------------------------DSQNL--------- 281 (415)
T ss_dssp CE-EECCCCSS------------CEE-------EEEECT---------------------------TSSEE---------
T ss_pred CE-EeCcCCCC------------ccc-------ceEECC---------------------------CCCEE---------
Confidence 75 34433311 001 122221 11111
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIs 325 (828)
+. .+ .......|.+||+.+++. ..+..|...+.
T Consensus 282 --~~------------------------------~s--------------~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~ 314 (415)
T 2hqs_A 282 --AF------------------------------TS--------------DQAGRPQVYKVNINGGAP-QRITWEGSQNQ 314 (415)
T ss_dssp --EE------------------------------EE--------------CTTSSCEEEEEETTSSCC-EECCCSSSEEE
T ss_pred --EE------------------------------EE--------------CCCCCcEEEEEECCCCCE-EEEecCCCccc
Confidence 00 00 000112688889988764 45667778899
Q ss_pred EEEEcCCCCEEEEEecC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC-
Q 003336 326 ALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG- 402 (828)
Q Consensus 326 aLaFSPdG~lLATaS~D-G-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG- 402 (828)
+++|+|||++|++++.+ | ..|.+||+.++ . +..+..+ ..+.+++|+|||++|++++.++
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~------------~---~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------G---VQVLSST---FLDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTC------------C---EEECCCS---SSCEEEEECTTSSEEEEEEEETT
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCC------------C---EEEecCC---CCcCCeEEcCCCCEEEEEEcCCC
Confidence 99999999999998875 2 35899999875 1 1234322 2589999999999999999887
Q ss_pred --cEEEEecCCCCCceeeccCCC
Q 003336 403 --TSHLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 403 --TVhIwdl~~~gg~~~~~~H~~ 423 (828)
++.+||+. .+....+..|..
T Consensus 377 ~~~l~~~d~~-g~~~~~l~~~~~ 398 (415)
T 2hqs_A 377 GSVLNLVSTD-GRFKARLPATDG 398 (415)
T ss_dssp EEEEEEEETT-SCCEEECCCSSS
T ss_pred ccEEEEEECC-CCcEEEeeCCCC
Confidence 79999986 444556666643
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.63 E-value=4.3e-13 Score=139.88 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=77.2
Q ss_pred eEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 302 MVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 302 ~V~IwDl~s~~~i-~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
.|.+||+.+++.. ..+..|...+.+++|+|||++|+++ +++ |.+||+.++ ..+..+..+
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~--- 279 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKN--------------ASIKRVPLP--- 279 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCC--------------cCcceecCC---
Confidence 6899999998764 3345677788999999999999998 455 899999875 333344322
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~ 420 (828)
..+.+++|+|||++|++++.+++|+|||+.+......+..
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 2478999999999999999999999999987654445543
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.62 E-value=1.8e-13 Score=143.82 Aligned_cols=273 Identities=9% Similarity=0.078 Sum_probs=161.4
Q ss_pred CcEEEEEc-cCCeEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+++.+. ++.+.+||.+. +++...+..+..++ .+.+.|+. ..|+++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg--------------~~l~~~~~~------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDC--------------SNVVVTSDF------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSS--------------CEEEEEEST-------------
T ss_pred CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCC--------------CEEEEEeCC-------------
Confidence 45555554 45699999987 55655555555556 77777642 234444431
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEECCCCcE-EEEEeCCCCEEE-EEEc--CCEEEEEeCC----EEEEEECCCCceE
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-VHMLKFRSPIYS-VRCS--SRVVAICQAA----QVHCFDAATLEIE 168 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-V~tL~f~s~V~s-V~~S--~riLAVs~~~----~I~IwDl~t~~~l 168 (828)
.++|.+||+.+++. +..+........ ++++ +++|+++... +|++||+.+++.+
T Consensus 61 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 61 -------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp -------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred -------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 16899999999998 777776555555 8886 6677775555 8999999999987
Q ss_pred EEEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcc-eeeeeccccc
Q 003336 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR-VAHYAKESSK 245 (828)
Q Consensus 169 ~tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~-Va~~A~~ssk 245 (828)
..+..... ...++++| ++|..+.. .+.. +..|..+...
T Consensus 122 ~~~~~~~~-------------~~~~~~spdg~~l~~~~~--------------------------~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 122 STIPIPYD-------------AVGIAISPNGNGLILIDR--------------------------SSANTVRRFKIDADG 162 (331)
T ss_dssp EEEECCTT-------------EEEEEECTTSSCEEEEEE--------------------------TTTTEEEEEEECTTC
T ss_pred EEEECCCC-------------ccceEECCCCCEEEEEec--------------------------CCCceEEEEEECCCC
Confidence 77654321 12344544 34443310 0111 2222222111
Q ss_pred ceeceeEeccCccceeeccccccccCCCCCCcccc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcE---EEEeccCC
Q 003336 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAHK 321 (828)
Q Consensus 246 ~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa-~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~---i~~f~aH~ 321 (828)
.+... . .+. ++.+......+ .++ |. -.++....++.|.+||+.+++. +..+..+
T Consensus 163 ~~~~~----~---~~~--------~~~~~~~~~~~~spd----g~--~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~- 220 (331)
T 3u4y_A 163 VLFDT----G---QEF--------ISGGTRPFNITFTPD----GN--FAFVANLIGNSIGILETQNPENITLLNAVGTN- 220 (331)
T ss_dssp CEEEE----E---EEE--------ECSSSSEEEEEECTT----SS--EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-
T ss_pred cEeec----C---Ccc--------ccCCCCccceEECCC----CC--EEEEEeCCCCeEEEEECCCCcccceeeeccCC-
Confidence 11000 0 000 00000000000 111 10 0233445678999999999988 8888765
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC--cccc---EEEEEEccCCCEEE
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAV---IQDISFSDDSNWIM 396 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~--t~a~---I~sIaFSpDg~~LA 396 (828)
..+..++|+|||++|+.++.....|.+||+.++ ....+..+..+. .... ...++|+|||++|+
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG------------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT------------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC------------ceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 556789999999977766554344899999876 233344444331 1111 35689999999987
Q ss_pred EEeC-CCcEEEEecCC
Q 003336 397 ISSS-RGTSHLFAINP 411 (828)
Q Consensus 397 s~S~-DGTVhIwdl~~ 411 (828)
+++. +++|+|||+..
T Consensus 289 v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 289 ISANISRELKVFTISG 304 (331)
T ss_dssp EEETTTTEEEEEETTS
T ss_pred EecCCCCcEEEEEecC
Confidence 7665 56999999975
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.7e-15 Score=171.59 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=156.9
Q ss_pred CCCcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcc------cccCcc--ccCCCEEEEEeCCCCc
Q 003336 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSK------RSRDKF--AEVRPLLVFCADGSRS 86 (828)
Q Consensus 16 ~~~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~------~~~d~F--~~~rPLLavv~~~~~~ 86 (828)
+.++.|+.+..++ ++ |... .+.+..|.+.|..++++|++.... .....| ....+..++.. ++
T Consensus 25 pDG~~iASas~D~TV~--d~~~----~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw-SP-- 95 (588)
T 2j04_A 25 RDGTLYLTTFPDISIG--QPKY----AKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP-SP-- 95 (588)
T ss_dssp TTSCEEEECSSSEEEE--EECC----CSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE-CS--
T ss_pred CCCCEEEEEcCCceee--cccc----cceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE-CC--
Confidence 4577888877666 55 6443 234467999999999999873210 100111 12222222222 11
Q ss_pred cCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC------CEEEEEEc--CCEEEE-EeCCEE
Q 003336 87 CGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAI-CQAAQV 157 (828)
Q Consensus 87 g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s------~V~sV~~S--~riLAV-s~~~~I 157 (828)
||. ..+.....++|++||.++ ++..+. +. .|.+|+|| +++||+ +.+++|
T Consensus 96 ------dG~-------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 96 ------IDD-------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp ------SSS-------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred ------CCC-------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 211 111223458899999655 777777 44 49999997 678877 568999
Q ss_pred EEEECCCCce-------EEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCccccccccccccc
Q 003336 158 HCFDAATLEI-------EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA 230 (828)
Q Consensus 158 ~IwDl~t~~~-------l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~ 230 (828)
+|||+.+++. +.++..+.. +. .+.+ .-+||++
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~--gh---------~~~V----~sVawSP-------------------------- 192 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDA--GS---------KDWV----THIVWYE-------------------------- 192 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCT--TC---------CCCE----EEEEEET--------------------------
T ss_pred EEEECCCCccccccceeeeeeecccc--cc---------cccE----EEEEEcC--------------------------
Confidence 9999998752 455544310 00 0000 1122321
Q ss_pred CCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCC
Q 003336 231 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS 310 (828)
Q Consensus 231 s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s 310 (828)
+ + ++.++.|+.|++||+.+
T Consensus 193 -----------------------------------------d-------------------g-Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 193 -----------------------------------------D-------------------V-LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp -----------------------------------------T-------------------E-EEEEETTCCEEEECCCS
T ss_pred -----------------------------------------C-------------------c-EEEEeCCCeEEEEECCC
Confidence 0 0 12234578999999998
Q ss_pred CcE---EEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEE
Q 003336 311 KNV---IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (828)
Q Consensus 311 ~~~---i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sI 386 (828)
++. ..+++ +|...|.+|+|+ |+.||+++ +|+ |++||+..+ ++..+..|+. +.|++|
T Consensus 212 ~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~---------------~~~~~~~gh~-~~V~~v 271 (588)
T 2j04_A 212 SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNY---------------SISSLKTGSL-ENFHII 271 (588)
T ss_dssp SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTT---------------EEEEEECSCC-SCCCEE
T ss_pred CccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCC---------------eEEEEEcCCC-ceEEEE
Confidence 773 45674 898999999999 79999998 566 999999875 2223333654 569999
Q ss_pred EE--ccCCCEEEEEeCCCcEEEEecC
Q 003336 387 SF--SDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 387 aF--SpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+| |||++.|++++.||+ +||.++
T Consensus 272 a~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 272 PLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99 999999999999999 999997
No 129
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=168.75 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=83.9
Q ss_pred cccCCCCeEEEEECCCCc-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 003336 295 PDADNVGMVIVRDIVSKN-------VIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~-------~i~~f----~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
++++.||+|+|||+.++. .+.+| .+|...|.+|+|+||| ||+++.|++ |++||+....
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~-------- 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASS-------- 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSS--------
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCc--------
Confidence 445679999999999885 36787 6788899999999999 888888988 8999997650
Q ss_pred CCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec-cCCCCCC
Q 003336 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ-PTDANFT 426 (828)
Q Consensus 364 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~-~H~~~~~ 426 (828)
......++..++. ..|.+|+|+ |++||+++ +++|++||+... ....+. +|...+.
T Consensus 214 ---~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 214 ---HQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY-SISSLKTGSLENFH 269 (588)
T ss_dssp ---SCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT-EEEEEECSCCSCCC
T ss_pred ---cccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC-eEEEEEcCCCceEE
Confidence 0011234544443 459999999 68999997 699999999864 332333 6765443
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.56 E-value=2.2e-12 Score=149.44 Aligned_cols=247 Identities=14% Similarity=0.129 Sum_probs=157.9
Q ss_pred CcEEEEEccCC-eEEEEecCCCceeEeeeeecCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCCcc
Q 003336 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (828)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~hdG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg~~ 96 (828)
..+++.++..+ +.|||... +++...+..+.. +..+++.|+. .+|++++.+
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg--------------~~l~v~~~d------------- 199 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASG--------------RYLLVIGRD------------- 199 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTS--------------CEEEEEETT-------------
T ss_pred CEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCC--------------CEEEEECCC-------------
Confidence 56777777654 99999987 556555553333 8888888753 145545421
Q ss_pred cccCCCCCCCCCCCCCCcCCCEEEEEEC--CCCcEEEEEeCCCCEEEEEEcC------CEEEEE--eCCEEEEEECCCCc
Q 003336 97 TACNGTSANYHDLGNGSSVPTVVHFYSL--RSQSYVHMLKFRSPIYSVRCSS------RVVAIC--QAAQVHCFDAATLE 166 (828)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL--~Tg~~V~tL~f~s~V~sV~~S~------riLAVs--~~~~I~IwDl~t~~ 166 (828)
++|++||+ .+++++.++.....++.|+|++ ++|+|+ .+++|.|||..+++
T Consensus 200 --------------------~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 200 --------------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp --------------------SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred --------------------CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 67999999 9999999999888899999974 677764 47899999999999
Q ss_pred eEEEEEcCCCccCCCCCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003336 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (828)
Q Consensus 167 ~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~ 246 (828)
++.++.+...... .. +|... ..+...+.
T Consensus 260 ~~~~i~~~g~~~~------------~~-------~~~~~----------------------------~~v~~i~~----- 287 (543)
T 1nir_A 260 PKQIVSTRGMTVD------------TQ-------TYHPE----------------------------PRVAAIIA----- 287 (543)
T ss_dssp EEEEEECCEECSS------------SC-------CEESC----------------------------CCEEEEEE-----
T ss_pred cceeecccCcccC------------cc-------ccccC----------------------------CceEEEEE-----
Confidence 9998875321000 00 01100 00000000
Q ss_pred eeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE--EeccCCCCe
Q 003336 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA--QFRAHKSPI 324 (828)
Q Consensus 247 lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~--~f~aH~~pI 324 (828)
.|++ . ..+++...+|.|.+||+.+.+.+. .+. +...+
T Consensus 288 -----------------------s~~~--------------~---~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~ 326 (543)
T 1nir_A 288 -----------------------SHEH--------------P---EFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFL 326 (543)
T ss_dssp -----------------------CSSS--------------S---EEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSC
T ss_pred -----------------------CCCC--------------C---EEEEEECCCCeEEEEEecCCCcceeEEec-cCcCc
Confidence 0000 0 011223457899999998876544 443 55667
Q ss_pred EEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc--cEEEEEEccC-CCEEEEEe-
Q 003336 325 SALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDD-SNWIMISS- 399 (828)
Q Consensus 325 saLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpD-g~~LAs~S- 399 (828)
..++|+|||++|++++. +++ |.|||+.++ ..+..+.-|..++ ....+ ++|| +..+++++
T Consensus 327 ~~~~~spdg~~l~va~~~~~~-v~v~D~~tg--------------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNK-VAVIDSKDR--------------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTE-EEEEETTTT--------------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred cCceECCCCCEEEEEecCCCe-EEEEECCCC--------------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 88999999998766654 555 899999886 3444454332222 12222 4777 66667765
Q ss_pred CCCcEEEEecCC-------CCCceeeccCC
Q 003336 400 SRGTSHLFAINP-------LGGSVNFQPTD 422 (828)
Q Consensus 400 ~DGTVhIwdl~~-------~gg~~~~~~H~ 422 (828)
.|++|.|||+.+ .....++.+|.
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 689999999998 33344566654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.54 E-value=1.2e-12 Score=145.64 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=71.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.+||+.+++. ..+..|...+.+++|+|||++|++++.+ |. .|.+||+..+ ... .+.. .
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------------~~~---~l~~-~ 309 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------------APQ---RITW-E 309 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------------CCE---ECCC-S
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------------CEE---EEec-C
Confidence 4699999998876 6788899999999999999999988864 43 3667787664 111 2211 1
Q ss_pred ccccEEEEEEccCCCEEEEEeCC---CcEEEEecCCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 412 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~D---GTVhIwdl~~~ 412 (828)
...+.+++|||||++|++++.+ .+|++||+...
T Consensus 310 -~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 310 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp -SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred -CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 2348899999999999998875 58999999764
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.53 E-value=1.2e-12 Score=132.78 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=71.3
Q ss_pred CCCeEEEEEC--CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 299 NVGMVIVRDI--VSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 299 ~dG~V~IwDl--~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.++.++||++ .++ .+..+..|...+.+++|+|+|++|+.++ .++. ++||++... . ..+..+.
T Consensus 149 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~-~------------~~~~~~~ 213 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVD-G------------SSVERIT 213 (297)
T ss_dssp ETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETT-S------------SCEEECC
T ss_pred CCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCC-C------------CCcEEEe
Confidence 3466788875 344 4467778888999999999999888776 4776 799998642 0 1223332
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCC-----------CcEEEEecCCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSR-----------GTSHLFAINPLG 413 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~D-----------GTVhIwdl~~~g 413 (828)
. + ...+.+++|+|||++|++++.+ +++.+||+....
T Consensus 214 ~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 214 D-S-AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp C-C-SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred c-C-CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 2 2 2358899999999999998876 569999997643
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.53 E-value=1.4e-12 Score=151.02 Aligned_cols=280 Identities=11% Similarity=0.121 Sum_probs=170.2
Q ss_pred CcEEEEEccCCeEEEEe--cCCCceeEeeeeecCCEEEEEEec----CCCCcccccCccccCCCEEEEEeCCCCccCccc
Q 003336 18 RRVLLLGYRSGFQVWDV--EEADNVHDLVSRYDGPVSFMQMLP----RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv--~~~~~~~ellS~hdG~V~~v~~lP----~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~ 91 (828)
+.+++.+.++.+.+||+ .+ +.+...+. ....++.+.+.| +. .+|+++..
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~g~~p~~va~sp~~~~dg--------------~~l~v~~~--------- 245 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKE-PTKVAEIK-IGIEARSVESSKFKGYED--------------RYTIAGAY--------- 245 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSS-CEEEEEEE-CCSEEEEEEECCSTTCTT--------------TEEEEEEE---------
T ss_pred CEEEEECCCCeEEEEECcCCC-CcEEEEEe-cCCCcceEEeCCCcCCCC--------------CEEEEEEc---------
Confidence 56777777878999999 44 33433343 344568888876 42 14444432
Q ss_pred cCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCC------------CCEEEEEEc--CCEEEEE--eCC
Q 003336 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR------------SPIYSVRCS--SRVVAIC--QAA 155 (828)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~------------s~V~sV~~S--~riLAVs--~~~ 155 (828)
.+++|.+||..++++++++... ..+.+|.++ ++.+.++ .++
T Consensus 246 -----------------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 246 -----------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp -----------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred -----------------------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 1278999999999999998752 278899997 4454443 467
Q ss_pred EEEEEECCCCceEE--EEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccC
Q 003336 156 QVHCFDAATLEIEY--AILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 231 (828)
Q Consensus 156 ~I~IwDl~t~~~l~--tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s 231 (828)
+|.+||+.+.+.+. ++.... .| ..++++| |+|..+..
T Consensus 303 ~i~vvd~~~~~~l~~~~i~~~~----~~---------~~~~~spdg~~l~va~~-------------------------- 343 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIGAAP----FL---------HDGGWDSSHRYFMTAAN-------------------------- 343 (543)
T ss_dssp EEEEEECTTSSSCEEEEEECCS----SC---------CCEEECTTSCEEEEEEG--------------------------
T ss_pred eEEEEEecCCCcceeEEeccCc----Cc---------cCceECCCCCEEEEEec--------------------------
Confidence 99999999877544 332211 11 1244544 44422210
Q ss_pred CCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccC-CCCeEEEEECCC
Q 003336 232 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDAD-NVGMVIVRDIVS 310 (828)
Q Consensus 232 ~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~-~dG~V~IwDl~s 310 (828)
.+..|.-+-....+.++ ....|.. |..........++. |. .+++.. .+++|.|||+.+
T Consensus 344 ~~~~v~v~D~~tg~l~~--~i~~g~~-------------ph~g~g~~~~~p~~---g~---~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 344 NSNKVAVIDSKDRRLSA--LVDVGKT-------------PHPGRGANFVHPKY---GP---VWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp GGTEEEEEETTTTEEEE--EEECSSS-------------BCCTTCEEEEETTT---EE---EEEEEBSSSSEEEEEECCT
T ss_pred CCCeEEEEECCCCeEEE--eeccCCC-------------CCCCCCcccCCCCC---cc---EEEeccCCCceEEEEEeCC
Confidence 01122222222222111 0011110 00000000001110 11 133333 578999999998
Q ss_pred -------CcEEEEeccCCCCeEEEEEcCCCCEEEEEe-------cCCCEEEEEeCCCCCCCCCCccCCCCcee-EEEEE-
Q 003336 311 -------KNVIAQFRAHKSPISALCFDPSGILLVTAS-------VQGHNINIFKIIPGILGTSSACDAGTSYV-HLYRL- 374 (828)
Q Consensus 311 -------~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-------~DGt~I~IWdi~~~~~~~~~~~~~~~~~~-~l~~L- 374 (828)
.+++.+++.|...+..|+|+|||++|++++ .+++ |.|||+.++ ++. .+..+
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~~~------------~~~~~~~~v~ 469 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNL------------DAKYQVLPIA 469 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETTCT------------TSCCEEECHH
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECCCC------------CCCeEEeech
Confidence 899999999998899999999999999987 2456 899999986 111 11111
Q ss_pred -----ecCCccccEEEEEEccCCCEEEEEe-----CCCcEEEEecCCCCCceeecc
Q 003336 375 -----QRGLTNAVIQDISFSDDSNWIMISS-----SRGTSHLFAINPLGGSVNFQP 420 (828)
Q Consensus 375 -----~RG~t~a~I~sIaFSpDg~~LAs~S-----~DGTVhIwdl~~~gg~~~~~~ 420 (828)
..+ ...+..++|+|||++|.++. .|++|.|||..+......++.
T Consensus 470 ~~~~~~~~--~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 470 EWADLGEG--AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHHCCCSS--CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred hhcccCCC--CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 111 23489999999999999773 479999999998766656654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.53 E-value=9.4e-12 Score=130.02 Aligned_cols=103 Identities=9% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCeEEEEECCC-CcEEE----EeccC-CCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 299 NVGMVIVRDIVS-KNVIA----QFRAH-KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 299 ~dG~V~IwDl~s-~~~i~----~f~aH-~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
.++.|.+||+.+ ++... .+..+ ...+.+++|+|+|++|+.++ .+++ |++||+... .+ ....+
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-~g---------~~~~~ 217 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-HG---------NIECV 217 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-TS---------CCEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-CC---------cEEEE
Confidence 457899999987 54432 33333 34788999999999776655 5665 899999642 00 11222
Q ss_pred EEEe---cCCc-cccEEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 003336 372 YRLQ---RGLT-NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (828)
Q Consensus 372 ~~L~---RG~t-~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~ 412 (828)
..+. .++. ...+.+++|+|||++|+++. .+++|++|++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 2221 2211 12377899999999888555 7899999999853
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.53 E-value=1.4e-11 Score=129.73 Aligned_cols=175 Identities=11% Similarity=0.146 Sum_probs=122.5
Q ss_pred CEEEEEECCCCcEEEEEeCCC----------CEEEEEEc--CCEEEEEe---CCEEEEEECCCCceEEEEEcCCCccCCC
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS----------PIYSVRCS--SRVVAICQ---AAQVHCFDAATLEIEYAILTNPIVMGHP 181 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s----------~V~sV~~S--~riLAVs~---~~~I~IwDl~t~~~l~tL~t~p~~~~~p 181 (828)
++|.+||+++++.+..+.... .+..+.++ ++.|.++. ++.|++||+.+++.+..+..... .|
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~ 187 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK---MS 187 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT---TC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC---cc
Confidence 689999999999999998743 27888996 56666644 67899999999988777642210 00
Q ss_pred CCCCCCcccceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCcccee
Q 003336 182 SAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 261 (828)
Q Consensus 182 ~~~~~~~~~~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ 261 (828)
.-+++.. +|..+
T Consensus 188 ----------------~~~~~s~---------------------------dg~~l------------------------- 199 (353)
T 3vgz_A 188 ----------------TGLALDS---------------------------EGKRL------------------------- 199 (353)
T ss_dssp ----------------CCCEEET---------------------------TTTEE-------------------------
T ss_pred ----------------ceEEECC---------------------------CCCEE-------------------------
Confidence 1112221 11110
Q ss_pred eccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEEcCCCCEEE
Q 003336 262 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILLV 337 (828)
Q Consensus 262 ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a----H~~pIsaLaFSPdG~lLA 337 (828)
..+..++.|.+||+.+++.+..+.. +...+..++|+|||++|+
T Consensus 200 ---------------------------------~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 200 ---------------------------------YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp ---------------------------------EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred ---------------------------------EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 0112357899999999998888774 566788999999999888
Q ss_pred EEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCC
Q 003336 338 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (828)
Q Consensus 338 TaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~g 413 (828)
.++.+...|.+||+.++ ..+..+.-+. -..++|+||++++.+++ .+++|++||+.+..
T Consensus 247 ~~~~~~~~v~~~d~~~~--------------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNG--------------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEESSSSEEEEEETTTC--------------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEeCCCCEEEEEECCCC--------------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 77766445999999875 2333333222 24699999999776666 68999999997653
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.50 E-value=8.7e-12 Score=130.30 Aligned_cols=103 Identities=11% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCeEEEEECCC--CcE--EEEec---cC---CCCeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 299 NVGMVIVRDIVS--KNV--IAQFR---AH---KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 299 ~dG~V~IwDl~s--~~~--i~~f~---aH---~~pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
.++.|.+||+.. ++. +..+. .+ ...+.+++|+|||++|+.+. .++. |.+||+... .+.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~----------~~~ 266 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSED----------GSV 266 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTT----------SCC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCC----------CCc
Confidence 457899999853 332 22332 11 23577899999999877544 6665 899999742 002
Q ss_pred eeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCc
Q 003336 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 415 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg~ 415 (828)
...+..+..+ ..+.+++|+|||++|++++ .+++++||+++...+.
T Consensus 267 ~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 267 LSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred eEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 2344444322 2278899999999999888 6899999988765543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.48 E-value=9.4e-13 Score=154.23 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=134.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCC-----CceEEEEEcCCC-c-cCCCCCCCCC
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-----LEIEYAILTNPI-V-MGHPSAGGIG 187 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t-----~~~l~tL~t~p~-~-~~~p~~~~~~ 187 (828)
++|++||+.+++..........+..++|+ ++.||.+.+++|++||+.+ ++..+....... . .+.+--..-.
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 57999999999887776677788888997 6788888899999999998 765432211100 0 0000000000
Q ss_pred cccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccc
Q 003336 188 IGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (828)
Q Consensus 188 ~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y 265 (828)
-....++++| ++|||+... .+. +..+. +...+. .+.....+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d-----~~~---------------------~~~~~----------~~~~~~-~~~~~~~~ 223 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMD-----QSM---------------------VKPTP----------IVDYHP-LEAESKPL 223 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEE-----CTT---------------------SCCEE----------EEECCS-SSCEEEEE
T ss_pred CCCceEEECCCCCEEEEEEEC-----CCC---------------------CceEE----------eeccCC-CCCceEEe
Confidence 0012345554 667765310 000 00000 000000 00000000
Q ss_pred cccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEecCC
Q 003336 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQG 343 (828)
Q Consensus 266 ~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPdG~lLATaS~DG 343 (828)
. .| .+ | ....++.|.+||+.+++...... .|...|.+++|+|||++|++++.++
T Consensus 224 ~---y~---------~~-----g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 224 Y---YP---------MA-----G-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp C---CC---------BT-----T-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred e---CC---------CC-----C-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 0 00 00 0 12345789999999988655442 5777899999999999999988775
Q ss_pred ----CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCC-ce
Q 003336 344 ----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGG-SV 416 (828)
Q Consensus 344 ----t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAs~S~DGTVhIwdl~~~gg-~~ 416 (828)
..|.+||+.++. ....+...........+.+++||| ||++|++++.||+++||++...++ ..
T Consensus 280 ~~~~~~v~~~d~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~ 348 (706)
T 2z3z_A 280 AQNECKVNAYDAETGR-----------FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR 348 (706)
T ss_dssp TSCEEEEEEEETTTCC-----------EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred CCCeeEEEEEECCCCc-----------eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence 248999987640 112222211111001246789999 999999999999999999984444 33
Q ss_pred eeccC
Q 003336 417 NFQPT 421 (828)
Q Consensus 417 ~~~~H 421 (828)
.+..|
T Consensus 349 ~l~~~ 353 (706)
T 2z3z_A 349 QVTKG 353 (706)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 44443
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=9.9e-12 Score=130.49 Aligned_cols=94 Identities=7% Similarity=0.071 Sum_probs=69.2
Q ss_pred EECCCCcE-EEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccE
Q 003336 306 RDIVSKNV-IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 383 (828)
Q Consensus 306 wDl~s~~~-i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I 383 (828)
+|..+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+.++ ..+..+..+ ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~ 297 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQR--------------KLIKAANLD---HTY 297 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCC
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccC--------------eEEEEEcCC---CCc
Confidence 67766653 223345667889999999 99999998 555 899999875 333344323 236
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 384 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 384 ~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.+++|+|||++|++++.+++|+|||+.+......+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 789999999999999999999999998754444443
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.48 E-value=1.4e-12 Score=153.32 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=75.1
Q ss_pred eEEEEECCC-CcEEEEec--cCCCCeEEEEEcCCCCEEEEEec-----CCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 302 MVIVRDIVS-KNVIAQFR--AHKSPISALCFDPSGILLVTASV-----QGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 302 ~V~IwDl~s-~~~i~~f~--aH~~pIsaLaFSPdG~lLATaS~-----DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.|.+||+.+ ++...... .|...|..++| |||++|+.++. ++ .|.+||+.++ ....+..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~-~i~~~d~~~g------------~~~~~~~ 329 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKL-DLVEVTLASN------------QQRVLAH 329 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEE-EEEEEETTTC------------CEEEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeE-EEEEEECCCC------------ceEEEEE
Confidence 788899998 87655443 47788999999 99999998764 33 4899999876 2333333
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
.........+.+++|||||+++++++.||+++||.+...++...+..|
T Consensus 330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 221100002468999999999999999999999998754444445444
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.44 E-value=1.2e-10 Score=124.85 Aligned_cols=111 Identities=12% Similarity=0.177 Sum_probs=77.8
Q ss_pred ccCCCCeEEEEECCCCcE--EEEe---ccCCCCeEEEEEcCCCCEEEEEecC-CCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 296 DADNVGMVIVRDIVSKNV--IAQF---RAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~--i~~f---~aH~~pIsaLaFSPdG~lLATaS~D-Gt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
....++.|.+||+.+++. +..+ ..|.....+|+|+|||++|+++..+ ...|.||++... . +...
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~---------g~~~ 297 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-N---------GTLT 297 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-T---------CCEE
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-C---------CcEE
Confidence 334678999999987754 3333 3344567899999999998776665 334999999642 0 1233
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceeec
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg~~~~~ 419 (828)
.+..+..| ..+.+++|||||++|++++ .+++|.||+++...+.....
T Consensus 298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 44444322 3478999999999999988 67999999888765655443
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.43 E-value=8.6e-11 Score=124.94 Aligned_cols=106 Identities=8% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCeEEEEECCC--CcE--EEEeccCC------CCeEEEEEcCCCCEEE-EEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 299 NVGMVIVRDIVS--KNV--IAQFRAHK------SPISALCFDPSGILLV-TASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 299 ~dG~V~IwDl~s--~~~--i~~f~aH~------~pIsaLaFSPdG~lLA-TaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+ +...+++ |.|||+... +.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~-----------g~ 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD-----------GH 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG-----------GC
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC-----------Cc
Confidence 346788888764 432 33343332 3488999999999775 5555665 899998742 02
Q ss_pred eeEEEEEecCCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCceee
Q 003336 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVNF 418 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg~~~~ 418 (828)
...+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...+....
T Consensus 275 ~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 2344444321 1237899999999999988865 89999988776555443
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.43 E-value=1.5e-11 Score=124.53 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=120.1
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCC-CceEEEEEcCCCccCCCCCCCCCcccc
Q 003336 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 191 (828)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t-~~~l~tL~t~p~~~~~p~~~~~~~~~~ 191 (828)
.+++|++||+.+++....+.+...|.+++|+ +++|+++.++.|++||+.+ ++.......+... .+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-----------~~~ 88 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI-----------CNN 88 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC-----------BCS
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc-----------ccc
Confidence 3489999999999988888888899999997 6888888899999999998 7654333222100 011
Q ss_pred eeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccc
Q 003336 192 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (828)
Q Consensus 192 piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~ 269 (828)
.++++| ++|++...
T Consensus 89 ~~~~spdg~~l~~~~~---------------------------------------------------------------- 104 (297)
T 2ojh_A 89 DHGISPDGALYAISDK---------------------------------------------------------------- 104 (297)
T ss_dssp CCEECTTSSEEEEEEC----------------------------------------------------------------
T ss_pred ceEECCCCCEEEEEEe----------------------------------------------------------------
Confidence 122211 22222100
Q ss_pred cCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEE-EEecCCCEEEE
Q 003336 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLV-TASVQGHNINI 348 (828)
Q Consensus 270 ~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLA-TaS~DGt~I~I 348 (828)
.......|.+||+.+++ ...+..+. .+.+++|+|||++|+ +++.++. ++|
T Consensus 105 --------------------------~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~l 155 (297)
T 2ojh_A 105 --------------------------VEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FDI 155 (297)
T ss_dssp --------------------------TTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EEE
T ss_pred --------------------------CCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc-eEE
Confidence 00112356666666655 34454443 589999999999887 7778886 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC
Q 003336 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg 414 (828)
|++... . .....+... ...+.+++|+||+++|+.++ .+++++||++...++
T Consensus 156 ~~~~~~-~------------~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 156 YSMDID-S------------GVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEETT-T------------CCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEECC-C------------CcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 997532 0 011233221 23589999999999998877 499999999975433
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.40 E-value=1.3e-10 Score=122.37 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=131.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~--~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|.+||+.+++.++.+.....+..+.++ ++.+.++. ++.|++||+.+++.+.++....... +. ...+
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~------~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TE------EVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CS------SCCC
T ss_pred ccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--cc------ccCC
Confidence 78999999999999999887778888886 46555543 4799999999999888776532100 00 0000
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
..++-++++. +|..+ .
T Consensus 141 --~~~~~~~~s~---------------------------dg~~l-----------~------------------------ 156 (353)
T 3vgz_A 141 --LQPRELVADD---------------------------ATNTV-----------Y------------------------ 156 (353)
T ss_dssp --CEEEEEEEET---------------------------TTTEE-----------E------------------------
T ss_pred --CCCceEEECC---------------------------CCCEE-----------E------------------------
Confidence 0112233331 11110 0
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~ 352 (828)
+.....++.|.+||+.+++.+..+..+...+.+++|+|||++|++++.++. |.+||+.
T Consensus 157 ---------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~~ 214 (353)
T 3vgz_A 157 ---------------------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDTA 214 (353)
T ss_dssp ---------------------EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEETT
T ss_pred ---------------------EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEECC
Confidence 001124678999999999999999867777889999999999999999886 8899998
Q ss_pred CCCCCCCCccCCCCceeEEEEEecCC--ccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~RG~--t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg 414 (828)
++ ..+..+.-+. ....+.+++|+||+++|++++.+ ++|++||+.....
T Consensus 215 ~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 215 DN--------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TT--------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CC--------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 76 2333333211 12348899999999988777654 9999999976533
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.39 E-value=6e-12 Score=147.38 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=158.2
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecC---CEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG---~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.+++..+.++.+.+||+++ ++...++..+.. .|..+++.|++. .|+.+......
T Consensus 28 g~~~~~~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~--------------~l~~~~~~~~~-------- 84 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDRE--------------YALFSYNVEPI-------- 84 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSS--------------EEEEEESCCCC--------
T ss_pred CcEEEEeCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCCC--------------EEEEEecCccc--------
Confidence 4555556677799999987 566777766654 488999998642 46655532100
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCC----CCEEEEEEc--CCEEEEEeCCEEEEEECCCCceE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR----SPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~----s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l 168 (828)
. .....+.|.+||+.+++. ..+... ..|..++|+ ++.||.+.+++|++||+.+++..
T Consensus 85 ----~------------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 85 ----Y------------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp ----S------------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred ----e------------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 0 011347899999999986 444321 237888887 67888888899999999998765
Q ss_pred EEEEcCCCcc---CCCCC---CCCCcccceeeecc--ceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003336 169 YAILTNPIVM---GHPSA---GGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (828)
Q Consensus 169 ~tL~t~p~~~---~~p~~---~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A 240 (828)
+....+.... +.++- ...--.+..++++| ++|||+.... ..+..+.
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~--------------------------~~~~~~~ 201 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND--------------------------SRVPIME 201 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC--------------------------TTSCEEE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC--------------------------CccceEE
Confidence 5443221100 00000 00000012355655 6777763110 0000000
Q ss_pred cccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC
Q 003336 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (828)
Q Consensus 241 ~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH 320 (828)
... .....+..+. .+ ..+ ..|. ......|.+||+.+++....+..|
T Consensus 202 ~~~----------~~~~~~~~~~------------~~--~~~---~~G~-------~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 202 LPT----------YTGSIYPTVK------------PY--HYP---KAGS-------ENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp ECC----------CSSSSSCCCE------------EE--ECC---BTTS-------CCCEEEEEEEESSSSCCCEECCCC
T ss_pred eec----------cCCcCCCcce------------ec--cCC---CCCC-------CCCeeEEEEEECCCCceeEEeeCC
Confidence 000 0000000000 00 000 0010 123458999999998876777765
Q ss_pred ------CCCeEEEEEcCCCCEEEEEecCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccE----EEEE
Q 003336 321 ------KSPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI----QDIS 387 (828)
Q Consensus 321 ------~~pIsaLaFSPdG~lLATaS~DG---t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I----~sIa 387 (828)
...|.+++|||||++|++++..+ ..|.+||+.++ ....+.... . ...+ .+++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~--~-~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG------------VCTKKHEDE--S-EAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC------------CEEEEEEEE--C-SSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC------------cceEEEEec--c-CCEEeccCCCce
Confidence 56799999999999998876432 34899999875 223332221 1 1122 3789
Q ss_pred EccCCCEEEEE--eCCC----cEEEEecC
Q 003336 388 FSDDSNWIMIS--SSRG----TSHLFAIN 410 (828)
Q Consensus 388 FSpDg~~LAs~--S~DG----TVhIwdl~ 410 (828)
|||||++|+.. ..++ +.+||.++
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 99999988764 4677 66666555
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.36 E-value=8.9e-11 Score=131.89 Aligned_cols=107 Identities=9% Similarity=0.124 Sum_probs=80.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 294 ~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+++++.||+|+|||+.++..+..+.+|...|.+++|+|+|++||+|+.||+ |+|||++ + .......
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~------------~~~~~~~ 230 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-L------------QEKKVIP 230 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-C------------CEEEEEC
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-C------------ccccccc
Confidence 345667899999999999887777889999999999999999999999998 8999987 3 1122111
Q ss_pred EecCCc---cccEEEEEEccCCCEEEEE-eCCCc------EEEEecCCCCC
Q 003336 374 LQRGLT---NAVIQDISFSDDSNWIMIS-SSRGT------SHLFAINPLGG 414 (828)
Q Consensus 374 L~RG~t---~a~I~sIaFSpDg~~LAs~-S~DGT------VhIwdl~~~gg 414 (828)
.+.... ...|.+++|++++.++++. +.||+ +++|++...+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 111111 1259999999999998664 34543 89999987543
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.36 E-value=3.7e-10 Score=118.53 Aligned_cols=180 Identities=10% Similarity=0.135 Sum_probs=118.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC-CEEEEEEc--CCEEEE-Ee-CCEEEEEECCCCce-EEEEEcCCCccCCCCCCCCCccc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI-CQ-AAQVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S--~riLAV-s~-~~~I~IwDl~t~~~-l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
++|++||+.+++.+..+.+.. .+ .++++ ++.|.+ .. +++|++||+.+++. ...+.....
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------------- 84 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-------------- 84 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS--------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC--------------
Confidence 789999999999999988754 45 89996 555555 44 56999999999887 555543211
Q ss_pred ceeeeccce-EEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccc
Q 003336 191 GPLAVGPRW-LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (828)
Q Consensus 191 ~piAlg~r~-LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~ 269 (828)
+.. ++++. +|..+. .
T Consensus 85 ------~~~~~~~s~---------------------------dg~~l~-----------~-------------------- 100 (331)
T 3u4y_A 85 ------SMADVDITP---------------------------DDQFAV-----------T-------------------- 100 (331)
T ss_dssp ------CCCCEEECT---------------------------TSSEEE-----------E--------------------
T ss_pred ------CccceEECC---------------------------CCCEEE-----------E--------------------
Confidence 112 33321 111110 0
Q ss_pred cCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-CCEEEE
Q 003336 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINI 348 (828)
Q Consensus 270 ~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt~I~I 348 (828)
. ...+..+.|.+||+.+++.+..+..+. ...+++|+|||++|++++.+ +..|.+
T Consensus 101 -----------~-------------~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 101 -----------V-------------TGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp -----------C-------------CCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred -----------e-------------cCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEE
Confidence 0 000122389999999999988887654 45899999999866655444 443899
Q ss_pred EeCCCCCCCCCCccCCCCceeE--EEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC
Q 003336 349 FKIIPGILGTSSACDAGTSYVH--LYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (828)
Q Consensus 349 Wdi~~~~~~~~~~~~~~~~~~~--l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~gg 414 (828)
|++... + .... ...+..+ ..+..++|+|||++|++++ .+++|++||+.....
T Consensus 156 ~~~~~~--g---------~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 156 FKIDAD--G---------VLFDTGQEFISGG---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECTT--C---------CEEEEEEEEECSS---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEECCC--C---------cEeecCCccccCC---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 999753 0 1111 1122112 2378999999999766555 689999999986544
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.35 E-value=6.4e-10 Score=118.18 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCeEEEEECC-CCcE--EEEeccCC-CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 299 NVGMVIVRDIV-SKNV--IAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 299 ~dG~V~IwDl~-s~~~--i~~f~aH~-~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.++.|.+||+. +++. +..+..+. ..+..++|+|||++|+.++..+..|.+|++... . +....+..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~---------g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-T---------GAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-T---------TEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-C---------CceEEeeee
Confidence 45789999998 4543 23333333 367889999999977766554445899998752 0 022223333
Q ss_pred ecCCcc----ccEEEEEEccCCCEEE-EEeCCCcEEEEecCCC
Q 003336 375 QRGLTN----AVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 412 (828)
Q Consensus 375 ~RG~t~----a~I~sIaFSpDg~~LA-s~S~DGTVhIwdl~~~ 412 (828)
...... ..+..++|||||++|+ +...+++|+||++...
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 211110 2388999999999884 5566899999999753
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.33 E-value=8.5e-11 Score=138.23 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC----CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~----pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.+..|.+||+.++++...+..|.. .+.+++|+|||++|++++.+|+ ++||.+... .. +..+
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~-------------~~-~~~l 374 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK-------------GK-AAAL 374 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS-------------SC-EEES
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC-------------CC-eeee
Confidence 456899999999998888776654 4578999999999999999997 789987642 01 3344
Q ss_pred ecCCccccEEEE-EEccCCCEEEEEe-CCC--cEEEEecCCCCC
Q 003336 375 QRGLTNAVIQDI-SFSDDSNWIMISS-SRG--TSHLFAINPLGG 414 (828)
Q Consensus 375 ~RG~t~a~I~sI-aFSpDg~~LAs~S-~DG--TVhIwdl~~~gg 414 (828)
..+ ...|.++ +|||||++|+..+ .++ +++||++...+.
T Consensus 375 ~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 375 THG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 333 2347777 5999999886555 455 999999976444
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.31 E-value=2.7e-11 Score=139.20 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=71.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
+.|.+||+.+++.. .+..|...+..++|||||++||+++.+|. .|.+||+.++ ... .+ .++.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--------------~~~-~~-~~~~ 237 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--------------SVE-DL-ELPS 237 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--------------CEE-EC-CCSC
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--------------cEE-Ec-cCCC
Confidence 46999999988764 77889899999999999999998888882 3899998775 121 22 2322
Q ss_pred cccEEEEE--------EccCCCEEEEEeCCCcEEEEec
Q 003336 380 NAVIQDIS--------FSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 380 ~a~I~sIa--------FSpDg~~LAs~S~DGTVhIwdl 409 (828)
..+.+++ |||||+++++++.|++++||++
T Consensus 238 -~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 -KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 2244455 9999999999999999999999
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.30 E-value=3.9e-10 Score=117.43 Aligned_cols=57 Identities=9% Similarity=-0.045 Sum_probs=46.7
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEc--CCEEEEEe--CCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s---~V~sV~~S--~riLAVs~--~~~I~IwDl~t~~~l~tL~t 173 (828)
++|++||+.+++.+.++.+.. .+..++++ ++.+.++. +++|++||+.+++.+.++..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 789999999999999999877 68889996 55555543 56999999999998777653
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.27 E-value=4.5e-11 Score=139.98 Aligned_cols=52 Identities=4% Similarity=-0.014 Sum_probs=42.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CCEEEEEeC----------CEEEEEECCCCce
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 167 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s----~V~sV~~S--~riLAVs~~----------~~I~IwDl~t~~~ 167 (828)
+++|++||+.+++....+.... .|.+++|+ ++.|+.+.+ +.|++||+.+++.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 3689999999999888887644 38999997 677777654 6899999998875
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.27 E-value=1.1e-09 Score=128.19 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=67.5
Q ss_pred CCCeEEEEECC-CCcEEEEeccCCCCeEE-EEEcCCCCEEEEEecCCC----EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 299 NVGMVIVRDIV-SKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 299 ~dG~V~IwDl~-s~~~i~~f~aH~~pIsa-LaFSPdG~lLATaS~DGt----~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.+.. .|..||+..+ . +.
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~------------~---~~ 395 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------------K---TK 395 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC------------C---CE
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC------------C---ce
Confidence 34667788765 66778888889888877 899999998776555432 3555666543 1 11
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~D----GTVhIwdl~~~ 412 (828)
.+. + ...+.+++|||||++|+.++.+ +++++||+...
T Consensus 396 ~l~--~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 DLT--P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ESC--C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ecc--C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 222 1 2348899999999999887554 56999999754
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.26 E-value=6.8e-10 Score=120.24 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCeEEEEECC-CCcE--EEEec--cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee----E
Q 003336 300 VGMVIVRDIV-SKNV--IAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV----H 370 (828)
Q Consensus 300 dG~V~IwDl~-s~~~--i~~f~--aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~----~ 370 (828)
++.|.+||+. +++. +..+. .|...+..++|+|||++|++++..+..|.+|++... .+ ... .
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g---------~~~~~~~~ 235 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-TH---------MPVYTHHS 235 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TC---------CEEEEEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CC---------cEEEccce
Confidence 4589999998 6654 33444 356678999999999999888865445899987642 00 111 1
Q ss_pred EEEEecCCcc-c-------cEEEEE-EccCCCEEEEEeCCC------cEEEEecCC
Q 003336 371 LYRLQRGLTN-A-------VIQDIS-FSDDSNWIMISSSRG------TSHLFAINP 411 (828)
Q Consensus 371 l~~L~RG~t~-a-------~I~sIa-FSpDg~~LAs~S~DG------TVhIwdl~~ 411 (828)
+..+..+... . .+.+++ |||||++|++++.+. +|.||++..
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 1112111111 1 378999 999999998776432 899999975
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=1.9e-10 Score=142.11 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=79.6
Q ss_pred CCeEE-EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVI-VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~-IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
++.+. +||+.+++.. .+..|...+.+++|||||++||+++.+++ |++||+.++ ....+ ..++
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg------------~~~~~---~~~~ 419 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETG------------KPTVI---ERSR 419 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTC------------CEEEE---EECS
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCC------------ceEEe---ccCC
Confidence 44677 8899887654 44588889999999999999999999986 899999876 22222 2233
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC----------cEEEEecCCCCCceeeccCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRG----------TSHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DG----------TVhIwdl~~~gg~~~~~~H~ 422 (828)
. ..|.+++|||||++||+++.++ +|+|||+... ....+..|.
T Consensus 420 ~-~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~ 471 (1045)
T 1k32_A 420 E-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTEN 471 (1045)
T ss_dssp S-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSS
T ss_pred C-CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-cEEEeeCCC
Confidence 2 3488999999999999988755 9999999864 345555554
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.24 E-value=1.6e-11 Score=138.00 Aligned_cols=108 Identities=8% Similarity=0.166 Sum_probs=85.3
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 003336 296 DADNVGMVIVRDIVSK--------N---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~--------~---~i~~f~aH~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
+++.++.|+|||+.++ + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+..+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~--------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTET--------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSS---------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCC---------
Confidence 5678999999998764 2 25667789999999999998 899999999998 899999875
Q ss_pred CCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003336 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (828)
Q Consensus 364 ~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~~H 421 (828)
..+... .++ ...|.+++|+|||++||+++.||+|+|||+. ......+..|
T Consensus 183 -----~~~~~~-~~~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 183 -----VKVCAT-LPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp -----EEEEEE-ECG-GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred -----cceeec-cCC-CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 233333 233 2459999999999999999999999999997 3333344433
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.23 E-value=2.1e-10 Score=141.84 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC---------CEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG---------t~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
.++.|++||+.+++....+..|...|.+++|||||++||+++.++ ..|+|||+..+ .
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~ 463 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K 463 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c
Confidence 456899999999998888889999999999999999999988754 35999999875 2
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+..+.. + ...+.+++|||||++|+.++.++...+|+..
T Consensus 464 -~~~l~~-~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 -IFAATT-E-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -EEECSC-S-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred -EEEeeC-C-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 334432 2 2348889999999999999999999999875
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=140.54 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=78.8
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecC---CEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccCC
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG---~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~Dg 94 (828)
.+++..+.++.+.+||++. ++...++..+.. .|..+++.|++. .||++.....
T Consensus 27 g~~~~~~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~--------------~la~~~~~~~--------- 82 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQ--------------FVYLESDYSK--------- 82 (719)
T ss_dssp SEEEEECTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSS--------------EEEEEEEEEE---------
T ss_pred CeEEEEcCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCC--------------eEEEEecCce---------
Confidence 4677777778899999987 567777765533 488889988642 5665553110
Q ss_pred cccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceE
Q 003336 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l 168 (828)
..+ ....++|++||+.+++.+....+...+..++|| ++.||.+.+++|++||+.+++..
T Consensus 83 ---~~~------------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 83 ---LWR------------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp ---CSS------------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ---eEE------------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence 000 001278999999999874323345678889997 67888888999999999988764
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.20 E-value=2.6e-09 Score=115.64 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred CeEEEE-EcCCCCEEEEEecCCC-----EEEEEeCCC-CCCCCCCccCCCCceeEEEEEecCCccccEEEEEEcc---CC
Q 003336 323 PISALC-FDPSGILLVTASVQGH-----NINIFKIIP-GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD---DS 392 (828)
Q Consensus 323 pIsaLa-FSPdG~lLATaS~DGt-----~I~IWdi~~-~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp---Dg 392 (828)
.+..++ |+|||++|++++.+.. .|.||++.. + ....+..+.... ...+..++|+| ||
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~-~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTP-TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECS-SCCTTCCCEEECTTCT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecC-CCCcccceecCCCcCC
Confidence 488999 9999999887765443 599999963 3 222222111111 12356789999 89
Q ss_pred CEEEEEeCC-CcEEEEecCCC
Q 003336 393 NWIMISSSR-GTSHLFAINPL 412 (828)
Q Consensus 393 ~~LAs~S~D-GTVhIwdl~~~ 412 (828)
++|++++.+ ++|+||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999999875 99999999764
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.19 E-value=2.2e-09 Score=112.56 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=46.7
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CCEEEEE--eCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S--~riLAVs--~~~~I~IwDl~t~~~l~tL~t 173 (828)
++|++||+.+++.++++.... .+..++++ ++.+.++ .+++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 789999999999999998876 77888886 5555554 367999999999988777753
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.17 E-value=4.5e-10 Score=128.95 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=71.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 303 V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D----Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
+.|||+.++++......+. .+++|||||++||+++.+ ++ |.+||+.++ ..+ .|. ++
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~~g------------~~~---~l~-~~ 193 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSG------------GLR---VFD-SG 193 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETTTC------------CCE---EEC-CS
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCCCC------------Cce---Eee-cC
Confidence 4499999887655544333 789999999999988876 44 899998775 122 332 22
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC--cEEEEecCCCCCceeeccCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPLGGSVNFQPTD 422 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DG--TVhIwdl~~~gg~~~~~~H~ 422 (828)
...+.+++|||||++||++..++ +|++||+...... .+..|.
T Consensus 194 -~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 194 -EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp -SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred -CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 23489999999999999888899 8899998764333 444443
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.05 E-value=1.9e-09 Score=128.25 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=75.7
Q ss_pred CcEEEEEccCCeEEEEecCCCceeEeeeeecCC---EEE--EEEecCCCCcccccCccccCCCEEEEEeCCCCccCcccc
Q 003336 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGP---VSF--MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (828)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~hdG~---V~~--v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~ 92 (828)
+++|..+ ++.+.+||+.+ ++...++..+... +.+ +.+.|+. ..|++.....
T Consensus 28 g~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------~~l~~~~~~~-------- 83 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDG--------------QFILLEYNYV-------- 83 (740)
T ss_dssp SEEEEEE-TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTS--------------SEEEEEEEEE--------
T ss_pred CcEEEEc-CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCC--------------CEEEEEECCe--------
Confidence 5777777 77899999987 5677777766432 222 5666653 2455554311
Q ss_pred CCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceE
Q 003336 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (828)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l 168 (828)
...+ ....+.+.+||+.+++......++..+..++|| ++.||.+.+..|++||+.+++..
T Consensus 84 ----~~~r------------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 84 ----KQWR------------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ----ECSS------------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ----eeEE------------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 0000 012267899999999866533456789999998 67888888999999999988743
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.03 E-value=8e-10 Score=129.85 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=41.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CCEEEEEe----------CCEEEEEECCCCce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQ----------AAQVHCFDAATLEI 167 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s----~V~sV~~S--~riLAVs~----------~~~I~IwDl~t~~~ 167 (828)
++|++||+.+++....+.... .|.+++|| ++.||.+. +++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 679999999999887776543 38899997 67887754 37999999998875
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.00 E-value=7.4e-08 Score=105.11 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=65.5
Q ss_pred CCCeEEEEECCCCc--EEEEecc------CC----CCeEEEEEcCCCCEEEEEec-C---------CCEEEEEeCCCCCC
Q 003336 299 NVGMVIVRDIVSKN--VIAQFRA------HK----SPISALCFDPSGILLVTASV-Q---------GHNINIFKIIPGIL 356 (828)
Q Consensus 299 ~dG~V~IwDl~s~~--~i~~f~a------H~----~pIsaLaFSPdG~lLATaS~-D---------Gt~I~IWdi~~~~~ 356 (828)
.+|.|.++|+.... .+..+.. +. .....++|+|||+.|..+.. + ...|.+||+.+.
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-- 296 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-- 296 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--
Confidence 46789999997653 2233221 11 11123789999887766543 2 124899999876
Q ss_pred CCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 357 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 357 ~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+.+.++.-+. +.+|+|+|||++|++++. ++|.|||+.+.
T Consensus 297 ------------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 297 ------------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ------------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ------------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 4555664332 789999999999998887 99999999875
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.99 E-value=7.7e-07 Score=91.83 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH--~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
++.|++||. +++.+..+..+ ...+..|+|+|+|+++++...++..|.+||... ..+..+..+
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------------~~~~~~~~~ 247 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------------QLISALESK 247 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------------CEEEEEEES
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---------------CEEEEEccc
Confidence 568999997 45666777544 367899999999999999887752489998532 123333322
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....+.+|+|+|||+++++ +.+++|+||++...
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 22234789999999987777 67999999998653
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.98 E-value=1.8e-07 Score=99.91 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=71.8
Q ss_pred ccCCCCeEEEEECCCCcE------E------EEe-ccCCCCeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCc
Q 003336 296 DADNVGMVIVRDIVSKNV------I------AQF-RAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSA 361 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~------i------~~f-~aH~~pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~ 361 (828)
....++.|.+||+..... + ..+ ..+...+..++|+|||++|+.++. +++ |.+||+..+
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g------- 243 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADG------- 243 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETT-------
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCC-------
Confidence 344578999998875431 1 122 234456789999999998888774 554 999999754
Q ss_pred cCCCCceeEEEEEecCCc-cccEEEEEEccCCCEEEEEeCC--CcEEEEecCCCCCc
Q 003336 362 CDAGTSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSR--GTSHLFAINPLGGS 415 (828)
Q Consensus 362 ~~~~~~~~~l~~L~RG~t-~a~I~sIaFSpDg~~LAs~S~D--GTVhIwdl~~~gg~ 415 (828)
....+..+..... .....+++|||||++|+++..+ ++|.||++.+..+.
T Consensus 244 -----~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 244 -----MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp -----EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred -----ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 2233333322111 1236799999999999777765 89999999854443
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.95 E-value=5.4e-08 Score=104.30 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=59.5
Q ss_pred CeEEEEECCCCcEEEEeccCC--CCeEEEEEcCCCCEEEEEecC-CC---EEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 301 GMVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQ-GH---NINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~--~pIsaLaFSPdG~lLATaS~D-Gt---~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
..|.++|+.+++. ..+..+. ..+..++|||||+.||..+.+ |. .|.+||+.++ ....+..+
T Consensus 216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~ 282 (388)
T 3pe7_A 216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL------------ENRQLTSM 282 (388)
T ss_dssp CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC------------CEEEEEEE
T ss_pred ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC------------ceEEEEcC
Confidence 3577788766544 4444444 358889999999987665542 32 2899999876 23344444
Q ss_pred ecCCcc--ccEEEEEEccCCCEEEEE---------eCCCcEEEEecCC
Q 003336 375 QRGLTN--AVIQDISFSDDSNWIMIS---------SSRGTSHLFAINP 411 (828)
Q Consensus 375 ~RG~t~--a~I~sIaFSpDg~~LAs~---------S~DGTVhIwdl~~ 411 (828)
. +... .....++|||||++|+.. ..+..|.+||+..
T Consensus 283 ~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 283 P-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp C-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred C-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 2 2100 001124799999999865 4456899999875
No 167
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.90 E-value=1.2e-06 Score=93.78 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=66.3
Q ss_pred CCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~-~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.++|..+++.+..+.... .....|+|+|||++|..+.. + |.+||+.++.... .. .+..+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~----------~~--~~~~~- 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPV----------RP--FLEFR- 265 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCS----------SC--SBCCC-
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceee----------ee--eecCC-
Confidence 4789999999999887776432 36789999999998888764 5 7899987651000 00 01001
Q ss_pred ccccEEEEEEcc-CCCEEEEE----eCCCcEEEEecC
Q 003336 379 TNAVIQDISFSD-DSNWIMIS----SSRGTSHLFAIN 410 (828)
Q Consensus 379 t~a~I~sIaFSp-Dg~~LAs~----S~DGTVhIwdl~ 410 (828)
......|+|+| +++..++. ..+++|.+||..
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 13478999999 55555555 678999999987
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.88 E-value=3e-08 Score=118.05 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=38.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC------CEEEEEEc--CCEEEEEeC----------CEEEEEECCCCceE
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEIE 168 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s------~V~sV~~S--~riLAVs~~----------~~I~IwDl~t~~~l 168 (828)
++|++||+.++++...+.... ...++.+| ++.|+.+.+ +.+++||+.+++..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 689999999999887776432 22335666 677777654 57889999998743
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.84 E-value=2.1e-07 Score=99.68 Aligned_cols=99 Identities=6% Similarity=-0.025 Sum_probs=67.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCC-----CEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DG-----t~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
...+.|.+||+.+++.. .+..+...+..++||| ||+.||.++.++ ..|.++|+..+ ..
T Consensus 165 ~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~--- 228 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT------------NM--- 228 (388)
T ss_dssp CCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC------------CC---
T ss_pred CCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC------------ce---
Confidence 34578999999998654 4445667899999999 999999887643 13666676543 11
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEEeCC-C----cEEEEecCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSR-G----TSHLFAINPL 412 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D-G----TVhIwdl~~~ 412 (828)
..+..+.....+..++|||||++|+..+.+ + +|++||+...
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 233222211247789999999988776543 2 3899998764
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.83 E-value=1.3e-07 Score=109.73 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=70.6
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC--CCCCCCCCccCCCCceeEEEEE
Q 003336 301 GMVIVRDIV-SK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 301 G~V~IwDl~-s~---~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~--~~~~~~~~~~~~~~~~~~l~~L 374 (828)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+. .+ ... .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~~~------------~~~---~l 280 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPATG------------AAT---QL 280 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTTTC------------CEE---ES
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECCCC------------cee---ec
Confidence 479999998 56 444445566788999999999998888888885 4555443 32 111 22
Q ss_pred ecCCccc-------cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc-eeeccC
Q 003336 375 QRGLTNA-------VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQPT 421 (828)
Q Consensus 375 ~RG~t~a-------~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~-~~~~~H 421 (828)
..+.... .+.+++|+||++++++++. ++++||.++..++. ..+..|
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence 1221111 1567999999999999999 99999977654333 344433
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.80 E-value=1.2e-06 Score=92.47 Aligned_cols=97 Identities=14% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEE-EEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsa-LaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
...|.+|| +++....+..|...|.. ++|+ || ++++++.+|+ ++|| +..+ ... .+..+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g------------~~~---~~~~~- 300 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDG------------EIK---PIAKG- 300 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESS------------SEE---EEECS-
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCC------------ceE---EEecC-
Confidence 35788899 66665556677788986 9999 99 9999999987 8999 8633 122 22222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcE-EEEecCCCCCceeeccCCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTS-HLFAINPLGGSVNFQPTDA 423 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTV-hIwdl~~~gg~~~~~~H~~ 423 (828)
...|.+++|+| .++++++.+++. +||.+. +....+..|..
T Consensus 301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n~ 341 (347)
T 2gop_A 301 -RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYND 341 (347)
T ss_dssp -SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTTS
T ss_pred -CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEeccccH
Confidence 23589999999 788888888776 899987 44445555543
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.79 E-value=1.2e-07 Score=101.34 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=63.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEec---------------CCCEEEEEeCCCCCCCCCCccCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASV---------------QGHNINIFKIIPGILGTSSACDA 364 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~---------------DGt~I~IWdi~~~~~~~~~~~~~ 364 (828)
+.|.+||+.+++........ .+. ++|+| ||++|++++. ....|.+||+..+
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~---------- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK---------- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT----------
T ss_pred ceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC----------
Confidence 46999999887654322211 233 89999 9999998652 1234899998765
Q ss_pred CCceeEEEEEecCCcc---------ccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCceeec
Q 003336 365 GTSYVHLYRLQRGLTN---------AVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 365 ~~~~~~l~~L~RG~t~---------a~I~sIaFSpDg~~LAs~S~-DGTVhIwdl~~~gg~~~~~ 419 (828)
....+.. .... ..+.+++|+|||++|+.++. +++..||.+...++...+.
T Consensus 331 --~~~~l~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 --SAQKLCK---HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp --BCCEEEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred --ceEEccC---CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 1222221 1110 01456899999999988775 6788888887666655543
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.78 E-value=8.1e-07 Score=95.23 Aligned_cols=177 Identities=7% Similarity=0.035 Sum_probs=118.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCccccee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs-~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~pi 193 (828)
++|.+||++|++.+.++........|+++ ++++++. .++.|.+||+.+++...++...... + ..
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-~------------~~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-M------------ES 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-T------------TT
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-c------------cC
Confidence 78999999999999999766788889983 5444444 5789999999999877776532100 0 00
Q ss_pred eeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCC
Q 003336 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (828)
Q Consensus 194 Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~ 273 (828)
-.|.-|++.. +.|
T Consensus 131 -~~p~~i~~~~----------------------------------------~~l-------------------------- 143 (328)
T 3dsm_A 131 -GSTEQMVQYG----------------------------------------KYV-------------------------- 143 (328)
T ss_dssp -CBCCCEEEET----------------------------------------TEE--------------------------
T ss_pred -CCcceEEEEC----------------------------------------CEE--------------------------
Confidence 0001111110 000
Q ss_pred CCCcccccCCCCCCCccCCccccc-CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC----------
Q 003336 274 QNSLQSAIPGGKSNGTVNGHFPDA-DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---------- 342 (828)
Q Consensus 274 ~~si~sa~~~~k~~g~~~g~~~s~-~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D---------- 342 (828)
++.. +.++.|.++|+.+++.+..+..... ...++|+|+|++++++..+
T Consensus 144 --------------------yv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 144 --------------------YVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp --------------------EEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred --------------------EEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCC
Confidence 0011 1256899999999999888875443 4679999999988887654
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 343 Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
+. |.+||..++ .....+.+..| .....|+|+||+++|.++.. +|.+||+.+.
T Consensus 203 ~~-v~~id~~t~------------~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 203 PS-LYRIDAETF------------TVEKQFKFKLG---DWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CE-EEEEETTTT------------EEEEEEECCTT---CCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred ce-EEEEECCCC------------eEEEEEecCCC---CCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 44 889998765 22222222212 24789999999999988765 8888888653
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.77 E-value=1.5e-06 Score=92.75 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEE-------ecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 299 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTA-------SVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPdG~lLATa-------S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
..+.|++||..+++.+.++. .+...+.+++|+| |.++++. +.+.+ |++||..++ .
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~~g--------------~ 279 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFSSG--------------E 279 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETTTC--------------C
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcCCC--------------e
Confidence 45789999999899998885 5667889999999 4444443 33335 899998776 3
Q ss_pred EEEEEe--cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 370 HLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 370 ~l~~L~--RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.+..+. .+. .....+|+|+|||.++++.+.+++|++|++..
T Consensus 280 ~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 344442 122 12389999999998899999999999999864
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.68 E-value=4.4e-07 Score=96.88 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=68.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCC-----EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt-----~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
....|.+||+.+++....+ .+...+..++|+| ||+.|+.++.++. .|.+||+..+ ...
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~~--- 229 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------------NVR--- 229 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------------CCE---
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------------cee---
Confidence 4568999999988765444 5677899999999 8998887765432 3777887543 111
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeCC-----CcEEEEecCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSSR-----GTSHLFAINPL 412 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~D-----GTVhIwdl~~~ 412 (828)
.+..+.....+..++|||||++|+.++.+ ++|++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 22221112248889999999998887655 45999998653
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.64 E-value=2.6e-05 Score=82.09 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=76.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..++.|.+||.. ++.+.++..+. .+.++.+.++|.+|++++.+++ |..||..++ ..++++.+.
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG--------------~~~w~~~~~ 205 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHC-FVQLNLESN--------------RIVRRVNAN 205 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSE-EEEECTTTC--------------CEEEEEEGG
T ss_pred cCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCe-EEEEeCcCC--------------cEEEEecCC
Confidence 356899999998 99999998764 3456788999999998887766 789998776 456777542
Q ss_pred C----ccccEEEEEEccCCCEEEEEeCC--------CcEEEEecCCCCCceeec
Q 003336 378 L----TNAVIQDISFSDDSNWIMISSSR--------GTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 378 ~----t~a~I~sIaFSpDg~~LAs~S~D--------GTVhIwdl~~~gg~~~~~ 419 (828)
. ....+..++..+||..+++.+.- +..+++.+.+. +.+.++
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~-g~~~W~ 258 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE-GKVVWQ 258 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT-SBEEEE
T ss_pred CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC-CCEEEE
Confidence 1 12337899999999999887521 35689999774 444443
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.59 E-value=2.6e-05 Score=80.98 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCeEEEEECC-CCcE---EEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 300 VGMVIVRDIV-SKNV---IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 300 dG~V~IwDl~-s~~~---i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.+.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++. |.+||.. + ..+..+.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g--------------~~~~~~~ 253 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-G--------------DELGRVL 253 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-S--------------CEEEEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-C--------------CEEEEEE
Confidence 4578888876 4443 33444455567789999999988877 554 8999875 3 2333332
Q ss_pred cCCccccEEEEEE-ccCCCEEEEEeCCCcEEEEecCC
Q 003336 376 RGLTNAVIQDISF-SDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 376 RG~t~a~I~sIaF-SpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.. . . +.+++| +||++.|.+++.++ ||.+.+
T Consensus 254 ~~-~-~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 254 TP-Q-T-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp CS-S-C-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred CC-C-C-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 21 1 2 788999 69999999999874 555554
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.57 E-value=1.8e-05 Score=92.43 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=123.7
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECC--CCceEEEEEcCCCccCCCCCCCCCccc
Q 003336 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGY 190 (828)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-s~~~~I~IwDl~--t~~~l~tL~t~p~~~~~p~~~~~~~~~ 190 (828)
.++|.+||+.|++.+.++.....+..+.++ +++|.| ..++.|.+||+. +++.+.++....
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--------------- 240 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------------- 240 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------------
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---------------
Confidence 379999999999999999988888899997 566655 556799999996 888777765321
Q ss_pred ceeeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeecccccccc
Q 003336 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (828)
Q Consensus 191 ~piAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~ 270 (828)
+|+-|+++..+ +.+|+.+
T Consensus 241 -----~P~~ia~s~~~-----------------------~pDGk~l---------------------------------- 258 (567)
T 1qks_A 241 -----EARSIETSKME-----------------------GWEDKYA---------------------------------- 258 (567)
T ss_dssp -----EEEEEEECCST-----------------------TCTTTEE----------------------------------
T ss_pred -----CCceeEEcccc-----------------------CCCCCEE----------------------------------
Confidence 12445554100 0012211
Q ss_pred CCCCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEEcCCCCEEEEE
Q 003336 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----------HKS-PISALCFDPSGILLVTA 339 (828)
Q Consensus 271 p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a----------H~~-pIsaLaFSPdG~lLATa 339 (828)
++....++.|.|+|..+.+++..+.. |.. .+.++.+++++..++..
T Consensus 259 -----------------------~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 259 -----------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp -----------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred -----------------------EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 01112346899999999999888763 223 58899999997766555
Q ss_pred ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 003336 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (828)
Q Consensus 340 S~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~ 412 (828)
-.+...|.++|.... ....+..+..+ ....++.|+||+++|.++. .+++|.++|+.+.
T Consensus 316 ~~~~g~v~~vd~~~~------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 316 VKETGKILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ETTTTEEEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ecCCCeEEEEecCCC------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 444334888988653 11222233222 2377899999999987766 5789999999875
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.56 E-value=6.6e-05 Score=78.85 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCeEEEEECCC-CcEEE--------EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 300 VGMVIVRDIVS-KNVIA--------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 300 dG~V~IwDl~s-~~~i~--------~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
.+.|.+||+.+ +..+. .+..+ ..+..|+|+++|+++++...++. |.+||.. + ..
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~~-g--------------~~ 265 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNKR-G--------------YP 265 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECTT-S--------------CE
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECCC-C--------------CE
Confidence 34677777753 22221 22233 35788999999999988877776 8899873 2 12
Q ss_pred EEEEecCCc----cccEEEEEEccCCCEEEEEeCCC
Q 003336 371 LYRLQRGLT----NAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 371 l~~L~RG~t----~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+..+.-... ...+.+++|+||++.|.+++.++
T Consensus 266 ~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 266 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 223321110 01478999999998887777664
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.54 E-value=1.9e-05 Score=81.39 Aligned_cols=92 Identities=13% Similarity=0.223 Sum_probs=67.8
Q ss_pred CCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-
Q 003336 300 VGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 376 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~--aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R- 376 (828)
.+.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+.++. |++||.... .+..+..
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g~---------------~~~~~~~~ 203 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEGQ---------------YLRQIGGE 203 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTCC---------------EEEEESCT
T ss_pred CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCCC---------------EEEEEccC
Confidence 4678889854 55666664 45567899999999998888877766 899997432 3334421
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCC-cEEEEec
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAI 409 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DG-TVhIwdl 409 (828)
|. ...+..|+|++||+++++...++ +|++|+.
T Consensus 204 g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 204 GI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp TT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred Cc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 21 13488999999999998888886 9999995
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.52 E-value=4.8e-06 Score=92.93 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=60.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 376 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R- 376 (828)
..+|.|.+||+.+++... +...|+|++|||+| ++.|..||+ |++|+.... ......++-+
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~------------~~~~k~~I~~P 203 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNG------------EMEKQFEFSLP 203 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEETT------------EEEEEEEECCC
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCc------------cccccceecCC
Confidence 467999999999887643 45689999999999 678889998 899987654 1111233411
Q ss_pred -------CCccccEEEEEEccCCCEEEEEe
Q 003336 377 -------GLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 377 -------G~t~a~I~sIaFSpDg~~LAs~S 399 (828)
++ ...|.+|+|.++++|+++=+
T Consensus 204 p~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 204 SELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp HHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred cccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 12 24599999999999998733
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.52 E-value=4.4e-06 Score=96.90 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=58.0
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSP--------ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~p--------IsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
.|.+||+.+++....+..|... +.+++|+|+|+++++++. |+ ++||.+... ...+..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~-------------~~~~~~ 330 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE-------------SGELVD 330 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT-------------TTEEEE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC-------------CCcEEE
Confidence 5677777666654433333222 567999999999999998 87 799954321 012334
Q ss_pred EecCCccccEEEE-EEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 374 LQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 374 L~RG~t~a~I~sI-aFSpDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
+..+ ...+..+ +++.+.-++++++.+....||.+...++.
T Consensus 331 l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 331 AAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4322 2236666 55444444556677777777766544443
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.50 E-value=9.2e-05 Score=86.38 Aligned_cols=57 Identities=23% Similarity=0.145 Sum_probs=48.0
Q ss_pred CEEEEEECC--CCcEEEEEeCCCCEEEEEEc------CCEEEEE--eCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLR--SQSYVHMLKFRSPIYSVRCS------SRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~--Tg~~V~tL~f~s~V~sV~~S------~riLAVs--~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.+||+. +++.+.++........|+|+ ++++.|+ ..++|.|||..|++.+.++.+
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 679999996 99999999887778889997 5677664 468999999999999988865
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.48 E-value=2.9e-05 Score=91.76 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=67.4
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEEcCCCCEEEEEecCCCE-EEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 300 VGMVIVRDIVSKN--VIAQFRAHKS--PISALCFDPSGILLVTASVQGHN-INIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 300 dG~V~IwDl~s~~--~i~~f~aH~~--pIsaLaFSPdG~lLATaS~DGt~-I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+||+..+ ..+..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l 375 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------------ALLKIF 375 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------CEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------CEEEec
Confidence 3578999998764 2345555544 68889999999999999999863 556666444 123344
Q ss_pred ecCCccccEEEEEEccCCCEEEEEe----CCCcEEEEecCCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPLG 413 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S----~DGTVhIwdl~~~g 413 (828)
.- . ...|..++|+||++.|+... ..+++.+||+.+..
T Consensus 376 ~~-~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PL-E-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC-C-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC-C-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22 2 34588999999998776442 34789999997643
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.46 E-value=8.2e-06 Score=85.93 Aligned_cols=172 Identities=8% Similarity=0.057 Sum_probs=115.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S--~riLAVs~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
+.|.+||.+||+.+.++.... .+.++.+. +++|+ +.++.|++||. +++.++++..... . ....
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~---~--------~~~~ 81 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAG---C--------EMQT 81 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTT---C--------EEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCC---c--------cccc
Confidence 789999999999999998864 67888885 67777 67889999999 8998888865210 0 0000
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
. +.. .+|.++.
T Consensus 82 ~-------~~~---------------------------~dG~~lv----------------------------------- 92 (276)
T 3no2_A 82 A-------RIL---------------------------PDGNALV----------------------------------- 92 (276)
T ss_dssp E-------EEC---------------------------TTSCEEE-----------------------------------
T ss_pred c-------EEC---------------------------CCCCEEE-----------------------------------
Confidence 0 000 0121110
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEEcCCCCEEEEEecCCCEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGHNI 346 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~------aH~~pIsaLaFSPdG~lLATaS~DGt~I 346 (828)
+.....+.|..+|. +++.+..+. .+..+...+++.++|++|++.+.+++ |
T Consensus 93 ----------------------~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v 148 (276)
T 3no2_A 93 ----------------------AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-V 148 (276)
T ss_dssp ----------------------EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-E
T ss_pred ----------------------EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-E
Confidence 00011234444553 445554443 12224456689999999999998887 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 347 ~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+||.. + ..++++.++. .+.++++.++|+.+++++.+++|..||..++
T Consensus 149 ~~~d~~-G--------------~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 149 REIAPN-G--------------QLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEECTT-S--------------CEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEECCC-C--------------CEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999986 6 4667776542 3667899999999999998888888887653
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.44 E-value=0.00013 Score=75.46 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=65.8
Q ss_pred CCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 300 VGMVIVRDIV-SKN-----VIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 300 dG~V~IwDl~-s~~-----~i~~f~aH~-~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+.|.+||+. +++ .+..+..+. ..+..|+|+++|+++++...++. |.+||..++ .....+
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g------------~~~~~~ 263 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG------------QPKMRI 263 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB------------SCSEEE
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCC------------cEeEEE
Confidence 4567778765 333 334455554 56788999999999998877775 889997644 111222
Q ss_pred EEecCCccccEEEEEEccCCCEEEEE-eCCCcEEEEecCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 412 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~-S~DGTVhIwdl~~~ 412 (828)
.+ . ...+.+++|+||+++|.++ ..++.|.+|++...
T Consensus 264 ~~--~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 264 RC--P--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EC--S--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eC--C--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 22 1 1348999999999965554 45689999998754
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.42 E-value=4e-05 Score=83.46 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe-----------CCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~-----------~~~I~IwDl~t~~~l~tL~t 173 (828)
++|.+||+.+++.+.++.....- .|+++ +++|.|+. ++.|.+||+.+++.+.++..
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 78999999999999988765544 88887 66777653 45799999999998888864
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.38 E-value=3.9e-05 Score=77.82 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=69.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.+.|.+||..+.........+...+..|+++++|.++++...++. |.+||.... .... ....+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~-------------~~~~-~~~~~~- 233 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TSTV-LPFTGL- 233 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS-------------CCEE-CCCCSC-
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC-------------ccee-eccCCC-
Confidence 457888888776654433444467899999999998888777776 889987543 1111 111121
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
..+.+|+|++||+++++.+.+++|++|++..
T Consensus 234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp -SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred -CCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2489999999999999999999999999865
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.36 E-value=0.0001 Score=82.07 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=69.4
Q ss_pred CCCeEEEEECCCCc--EEEEec---c-------CCCCeEEEEEcCCCCEEEEEecC---------CCEEEEEeCCCCCCC
Q 003336 299 NVGMVIVRDIVSKN--VIAQFR---A-------HKSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (828)
Q Consensus 299 ~dG~V~IwDl~s~~--~i~~f~---a-------H~~pIsaLaFSPdG~lLATaS~D---------Gt~I~IWdi~~~~~~ 357 (828)
..|.|.+.|+.+.. .+..+. . ....+..++++|+++.|..+..+ ++.|-++|+.+.
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--- 321 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--- 321 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---
Confidence 46899999997654 333332 0 11344568889999988776531 345788898876
Q ss_pred CCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCceeec
Q 003336 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 358 ~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S-~DGTVhIwdl~~~gg~~~~~ 419 (828)
+.+.++.-| ..+++|+||+|++ +|.++. .+++|.|+|..++.-..++.
T Consensus 322 -----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 322 -----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp -----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred -----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 333444323 2488999999997 555544 58999999998875544543
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.36 E-value=0.00016 Score=79.67 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=66.3
Q ss_pred CCCeEEEEECCCC--cEEEEeccC----------CCCeEEEEEcCCCCEEEEEecC---------CCEEEEEeCCCCCCC
Q 003336 299 NVGMVIVRDIVSK--NVIAQFRAH----------KSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (828)
Q Consensus 299 ~dG~V~IwDl~s~--~~i~~f~aH----------~~pIsaLaFSPdG~lLATaS~D---------Gt~I~IWdi~~~~~~ 357 (828)
..|.|.+.|+.+. +.+..+.-. ......++|+|||+.|..+... +..|.|+|+.+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 4568888998754 233333211 1224458899999877776532 124888898875
Q ss_pred CCCccCCCCceeEEEEEecCCccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCc
Q 003336 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGS 415 (828)
Q Consensus 358 ~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAs~S-~DGTVhIwdl~~~gg~ 415 (828)
+.+.++.-|. ..+.|+|+|||+ ++.++. .+++|.|||+.+..-.
T Consensus 309 -----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 309 -----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred -----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3334443332 368999999999 677766 5899999999875433
No 191
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.32 E-value=1.8e-05 Score=84.41 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCCeEEEEECCCCcEEEEeccC----------CCCeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAH----------KSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH----------~~pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
..+.|++|| .+++.+..+... ......|+|+|+ |.++++.+.+++ |++||..++
T Consensus 164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G------------- 228 (329)
T 3fvz_A 164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTK------------- 228 (329)
T ss_dssp SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTC-------------
T ss_pred CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCC-------------
Confidence 356788888 566777777432 234789999999 777777777665 899998765
Q ss_pred eeEEEEEecCCccccEEEEEEcc------CCCEEEEEeCCCcEEEEecCCCC
Q 003336 368 YVHLYRLQRGLTNAVIQDISFSD------DSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 368 ~~~l~~L~RG~t~a~I~sIaFSp------Dg~~LAs~S~DGTVhIwdl~~~g 413 (828)
..+..+........+.+++|+| +|+..++.+.+.+|++|++....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 229 -EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp -CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred -cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 2334443222233588999999 44444444455699999987653
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.32 E-value=0.0003 Score=73.83 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=60.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEE-EEecCCCEEEEEeCCCCCCCCCCccCCCCceeE-----EEEE
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLV-TASVQGHNINIFKIIPGILGTSSACDAGTSYVH-----LYRL 374 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLA-TaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~-----l~~L 374 (828)
+.|..+|..+++... +..+...+..++|+|||+.|. +.+.++. |.+||+.+. +. .... ...+
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~--g~--------~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDD--GV--------TIQPFGATIPYYF 229 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT--SS--------SEEEEEEEEEEEC
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCC--Cc--------CcccccceEEEec
Confidence 456666666554432 223334578999999998655 4444555 899998642 00 1111 1111
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.+. ..+..|+|++||+++++...++.|.+|+..
T Consensus 230 -~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 230 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 111 247889999999998888888999999873
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.31 E-value=4.2e-05 Score=90.35 Aligned_cols=99 Identities=6% Similarity=-0.043 Sum_probs=65.0
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEEcCCCCEEEEEecCCC---EEEEEeCCCCCCCCCCccCCCCcee
Q 003336 300 VGMVIVRDIVS------KN-VIAQFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 300 dG~V~IwDl~s------~~-~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt---~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
...|.+||+.+ +. .+..+..|...+.. .|+|+|+.|+..+.++. .|.+||+..+.. ....
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~ 327 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWK 327 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccce
Confidence 35788999876 43 45667777776665 49999998877665432 477888865400 0012
Q ss_pred EEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 370 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.+........|.+++|++++.++++...|+..+||.+..
T Consensus 328 ---~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 328 ---VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp ---EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred ---eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 222222223588999998888999999999776665543
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.30 E-value=0.00024 Score=73.70 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=61.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCC-CCCCCCCCccCCCCce-eEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSY-VHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~-~~~~~~~~~~~~~~~~-~~l~~L~RG~ 378 (828)
+.|..+|.. ++ +..+..+......|+|+|||++|++.+.+++ |.+||+. .+ .. .....+ ..
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~~g------------~~~~~~~~~-~~- 215 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNARG------------ETEYQGVHF-TV- 215 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECSSS------------CEEEEEEEE-CC-
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECCCC------------cCcCCCeEe-eC-
Confidence 456666655 43 3445566667899999999999966666665 8999986 22 12 111222 21
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
....+..|+|++||+++++. ++.|.+|+..
T Consensus 216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 12336789999999977666 8899999975
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.29 E-value=1.9e-05 Score=83.18 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCC------EEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt------~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
...|.+||+.+++.+..+.. . .+..++|+||| ++++++.++. ..+||.+..+ ....
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~------------~~~~--- 212 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG------------KEEK--- 212 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT------------EEEE---
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC------------ceEE---
Confidence 45799999999887556655 3 78899999999 8888876531 2456655432 1222
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+..+ ..+..+ ||||++|+.++.++
T Consensus 213 l~~~---~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 213 MFEK---VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEE---ESEEEE--EECSSCEEEEECCS
T ss_pred eccC---cceeeE--CCCCCEEEEEEccc
Confidence 2222 224444 99999999888664
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.06 E-value=0.00013 Score=86.01 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=59.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec---CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~---DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.|.+||..+++ +..+..|...+....| |+|.+++++.. +++ |.+||+..+.. ..... +-...
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~---------~~~~~---l~~~~ 317 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPAR---------ASWKE---IVPED 317 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSG---------GGCEE---EECCC
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCc---------cCCeE---EecCC
Confidence 56677765554 3445556556666666 66665555442 344 78888865400 00122 22222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
....|.+++|+ +++++++.+.|++.+||.+...++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 12348899999 788999999999999998875443
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.05 E-value=0.0004 Score=82.59 Aligned_cols=97 Identities=7% Similarity=-0.005 Sum_probs=64.6
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 300 VGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 300 dG~V~IwDl~s~--~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...||. .+||.+... + ..+..+.-
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~--g-----------~~~~~l~~- 403 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD--G-----------KPAGAVSL- 403 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT--S-----------CEEEECBC-
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC--C-----------CceeeccC-
Confidence 467899999874 3444455555667788888 7788999999987 677765421 0 12233321
Q ss_pred CccccEEEEEEccCCCEEEEEe----CCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S----~DGTVhIwdl~~~ 412 (828)
.....|..++|+||++.|+... ..+++.+||+.+.
T Consensus 404 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 404 PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 1123488999999998776332 3478999998653
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.05 E-value=0.0057 Score=62.11 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=64.1
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.+||. +++.... +..+...+.+|+|+++|+++++...++. |.+||. ++ . ...+.+..
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~-- 222 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SG------------E-ITEFKIPT-- 222 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSS--
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CC------------c-EEEEECCC--
Confidence 356778887 5554332 3344566889999999998887766665 889988 54 1 12233321
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
....+.+|+++++|+++++...++.|.+|+.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1234899999999997777767899999987
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.03 E-value=0.0028 Score=66.20 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=56.6
Q ss_pred CeEEEEEC--CCCc-----EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003336 301 GMVIVRDI--VSKN-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (828)
Q Consensus 301 G~V~IwDl--~s~~-----~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~ 373 (828)
+.|.+||+ .++. .+..+..+......|+++++|.+.++....++ |.+||..++ ..+..
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG--------------~~~~~ 235 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTG--------------KRLQT 235 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTC--------------CEEEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCc--------------eEEEE
Confidence 46666765 3332 23344444456788999999998888776665 889998765 23334
Q ss_pred EecCCccccEEEEEEc-cCCCEEEEEeCC
Q 003336 374 LQRGLTNAVIQDISFS-DDSNWIMISSSR 401 (828)
Q Consensus 374 L~RG~t~a~I~sIaFS-pDg~~LAs~S~D 401 (828)
+.-. ...+.+++|+ ||++.|.+++.+
T Consensus 236 i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 4322 1358999998 999988777654
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.02 E-value=0.0056 Score=65.16 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=53.2
Q ss_pred CeEEEEECC--CC-c-----EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 301 GMVIVRDIV--SK-N-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 301 G~V~IwDl~--s~-~-----~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+.|.+||+. ++ + .+..+..+...+..++++++|.++++...++. |.+||.. + ..+.
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~~-g--------------~~~~ 264 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDTD-G--------------NHIA 264 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECTT-C--------------CEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECCC-C--------------CEEE
Confidence 456666654 33 2 23334434455678999999998888766665 7888873 3 1222
Q ss_pred EEecCCccccEEEEEEc-cCCCEEEEEeCCC
Q 003336 373 RLQRGLTNAVIQDISFS-DDSNWIMISSSRG 402 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFS-pDg~~LAs~S~DG 402 (828)
.+.-. ...+.+++|+ +|++.|.+++.++
T Consensus 265 ~i~~~--~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 265 RYEVP--GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEECS--CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEECC--CCCcEEEEEecCCCCEEEEEecCC
Confidence 33211 2348999998 9998877666543
No 201
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.00 E-value=0.00017 Score=77.52 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=48.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe
Q 003336 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (828)
Q Consensus 320 H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S 399 (828)
+......|+|+++|.++++...++. |.+||...+ ....+.. ........+|+|.+|++++++.+
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G------------~~~~~~~---~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSA-IGVITSADR------------AYKLLVT---DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTT------------EEEEEEE---CGGGSCEEEEEECTTSCEEEEEC
T ss_pred cCCCCceEEECCCCCEEEEccCCCe-EEEEECCCC------------CEEEEEE---CCceecCCeeEECCCCcEEEEeC
Confidence 3334566999999999999888776 899997444 1222222 21123488999999999888877
Q ss_pred CCCcEEEE
Q 003336 400 SRGTSHLF 407 (828)
Q Consensus 400 ~DGTVhIw 407 (828)
..+.+.+|
T Consensus 310 ~~~~~~~f 317 (343)
T 2qe8_A 310 QLHHSAPL 317 (343)
T ss_dssp CGGGSGGG
T ss_pred cccccccc
Confidence 65544443
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.98 E-value=0.0029 Score=66.13 Aligned_cols=90 Identities=7% Similarity=0.051 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
......++|+|||+.|..+......|.+||+... .+. ....+.+..+..+ ......|++.+||++.++...
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~------~~~~~~~~~~~~~--~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQ------ISNRRSVYKLEKE--EQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCC------EEEEEEEEECCGG--GCEEEEEEEBTTSCEEEEEET
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCc------ccCcEEEEECCCC--CCCCCeeEECCCCCEEEEEcC
Confidence 3446789999999976555443334889987421 010 0011222333211 124789999999998888888
Q ss_pred CCcEEEEecCCCCCceeec
Q 003336 401 RGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 401 DGTVhIwdl~~~gg~~~~~ 419 (828)
.++|.+|+..+......+.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEcCCCceEEEEEE
Confidence 8999999887543333443
No 203
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.93 E-value=2.8e-06 Score=93.02 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=48.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..+|.|..||..+++.+..+..+. .+.++|++..|++++.+|+ |+.||..++ ..++++.-+
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG--------------~~~W~~~~~ 159 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR--------------ELRWNATYF 159 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS--------------SCCCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC--------------CEEEeEecc
Confidence 456889999999999988887664 2467789999999999987 899999876 122222111
Q ss_pred CccccEEEEEEccCC---CEEEEEeCCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg---~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....+++.|. ..+.+++.||.++.||..++
T Consensus 160 ----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 160 ----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp ----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred ----cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 11223445543 56777899999999999764
No 204
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.92 E-value=0.00077 Score=74.48 Aligned_cols=55 Identities=11% Similarity=-0.130 Sum_probs=44.7
Q ss_pred EEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe-----------CCEEEEEECCCCceEEEEEc
Q 003336 118 VVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~-----------~~~I~IwDl~t~~~l~tL~t 173 (828)
+|.++|+.+++.+.++.....- .+.++ ++.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999864322 68886 56666653 56899999999999999864
No 205
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.90 E-value=0.0036 Score=71.03 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc--------c----cEEEEEEcc
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN--------A----VIQDISFSD 390 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~--------a----~I~sIaFSp 390 (828)
..+.|.+||||++|..+......|.+||+... + ..+.+..+.-|-.. . .-+.+++||
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~--~---------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP--F---------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST--T---------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC--C---------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 46789999999999888876667999998632 0 12334444333100 0 137899999
Q ss_pred CCCEEEEEe------------CCCcEEEE--ecCCCCCceeec
Q 003336 391 DSNWIMISS------------SRGTSHLF--AINPLGGSVNFQ 419 (828)
Q Consensus 391 Dg~~LAs~S------------~DGTVhIw--dl~~~gg~~~~~ 419 (828)
||++|.++. .+..+.++ ++++.+| .++.
T Consensus 391 DGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 391 DGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp TSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 999999998 33445555 7788777 5554
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.89 E-value=0.0035 Score=69.54 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE--ecCC--------ccccEEEEEEccC
Q 003336 323 PISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--QRGL--------TNAVIQDISFSDD 391 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS-~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L--~RG~--------t~a~I~sIaFSpD 391 (828)
....|+|+|+|+++++-+ .. +.|++|++..+ ....+..- ..|. .-.....|+|++|
T Consensus 324 ~P~gia~d~dG~lyvad~~~~-~~I~~~~~~~G------------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~ 390 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKG-YCLRKLDILDG------------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE 390 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTT-CEEEEEETTTT------------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred CCeEEEEeCCCCEEEEeCCCC-CEEEEEECCCC------------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence 467899999999777755 44 45899997654 11111100 0010 0123789999999
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 003336 392 SNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 392 g~~LAs~S~DGTVhIwdl~ 410 (828)
|.++++-+..++|+.++++
T Consensus 391 g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 391 GGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SEEEEEESTTCEEEEEEEC
T ss_pred CCEEEEECCCCeEEEEEeC
Confidence 9988888889999988763
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.84 E-value=0.00056 Score=77.12 Aligned_cols=56 Identities=14% Similarity=-0.046 Sum_probs=45.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe-----------CCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVs~-----------~~~I~IwDl~t~~~l~tL~t 173 (828)
++|.++|+.|++.+.++.....- .|.++ ++.|.|+. ++.|.++|+.+++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 79999999999999999875433 78887 55555542 46899999999999888864
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.80 E-value=0.00052 Score=80.85 Aligned_cols=94 Identities=7% Similarity=0.055 Sum_probs=60.0
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEecCC-C--EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 300 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG-H--NINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 300 dG~V~IwDl~s~~----~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t--~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
...|++|++.++. .+.....|...+..++|||||++|+.++.++ . .|.+|+...+ ....+.
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------------~~~~l~ 268 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------------DFRLLV 268 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------------SCEEEE
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------------ceEEee
Confidence 3479999998875 4444445667889999999999998877665 2 2455544322 123322
Q ss_pred EEecCCccccEEEEEEccCCCEEEEEeC----CCcEEEEecCCC
Q 003336 373 RLQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPL 412 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaFSpDg~~LAs~S~----DGTVhIwdl~~~ 412 (828)
. +.. .+....| +||+ |+..+. +++|.+|++...
T Consensus 269 ~---~~~--~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 269 K---GVG--AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp E---CSS--CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred c---CCC--ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 1 211 2455556 6777 555554 578999998764
No 209
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.76 E-value=0.046 Score=55.27 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~-~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.+||. +++... .+..+...+.+|+++++|+++++...++. |.+||. .+ . ...+.+..+
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g------------~-~~~~~~~~~- 265 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NN------------I-IEEYPIQIK- 265 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TT------------E-EEEEECSSS-
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CC------------c-eEEEeCCCC-
Confidence 456788887 555332 23345567899999999998887756665 889987 33 1 222333222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
...+.++++ +++++.++.+ .+.+..|+...
T Consensus 266 -~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 266 -SAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp -SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred -CCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 235899999 9998877765 56666666654
No 210
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.76 E-value=0.0033 Score=66.46 Aligned_cols=164 Identities=9% Similarity=0.104 Sum_probs=107.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~riLAVs--~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
..|+.+|++||+.+.++.++...+. |.+.++.|-++ .++.+.+||+.|++.+.++...+ .+
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--eG------------- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--EG------------- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC-------------
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--Cc-------------
Confidence 5899999999999999999776644 56655554443 37899999999999988885421 00
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
.+ |++. +.. |
T Consensus 130 ~g-----lt~d-----------------------------g~~-----------L------------------------- 139 (262)
T 3nol_A 130 WG-----LTHN-----------------------------DQY-----------L------------------------- 139 (262)
T ss_dssp CC-----EEEC-----------------------------SSC-----------E-------------------------
T ss_pred eE-----EecC-----------------------------CCE-----------E-------------------------
Confidence 11 1111 000 0
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--C---CCeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--K---SPISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH--~---~pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
+++ +..++|.++|..+.+.+..+..- . ..++.|.|. +|++.|..-.+. .|.
T Consensus 140 ---------------------~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~-~I~ 195 (262)
T 3nol_A 140 ---------------------IMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN-KIV 195 (262)
T ss_dssp ---------------------EEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS-EEE
T ss_pred ---------------------EEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC-eEE
Confidence 011 12467999999999998887742 2 234567786 887776554444 588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecC--------CccccEEEEEEccCCCEEEEEeCC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRG--------LTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG--------~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
+.|..++ .+.....+..- ......+.|||+|+++.|.+++..
T Consensus 196 vIDp~tG------------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETG------------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTC------------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCC------------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 8898876 44555555210 111246899999999988887654
No 211
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.73 E-value=0.0059 Score=64.58 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=115.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--EEEEEEcCCEEEEEe--CCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSP--IYSVRCSSRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~--V~sV~~S~riLAVs~--~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
++|+++|++|++.+.++..+.. ...+.+.++.|-++. ++.|.+||+.|++.+.++..- .+. +
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------g--- 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------G--- 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------C---
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------e---
Confidence 7899999999999999987553 335666665555543 679999999999988877431 000 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
+. |++. |..+
T Consensus 110 ~g-----lt~D-----------------------------g~~l------------------------------------ 119 (266)
T 2iwa_A 110 WG-----LATD-----------------------------GKIL------------------------------------ 119 (266)
T ss_dssp CE-----EEEC-----------------------------SSSE------------------------------------
T ss_pred EE-----EEEC-----------------------------CCEE------------------------------------
Confidence 11 1111 1100
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--CC---CeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KS---PISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH--~~---pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
+++ +..++|.++|..+.+.+..+.-- .. .+..|.|. +|++.++...++. |.
T Consensus 120 ---------------------~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V~ 175 (266)
T 2iwa_A 120 ---------------------YGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-IA 175 (266)
T ss_dssp ---------------------EEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EE
T ss_pred ---------------------EEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-EE
Confidence 011 13568999999999988888732 22 36788888 8877666555554 88
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEecCCc----------cccEEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLT----------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t----------~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~ 412 (828)
+.|..++ .+.....+. |.. ......|+|+||++.|.+++ ..+++.+.++.+.
T Consensus 176 vID~~tg------------~V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDG------------TLLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTC------------CEEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCC------------cEEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999886 344444442 211 12468999999987655554 6788888888764
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.70 E-value=0.057 Score=54.58 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=61.1
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.++|. +++.... +..+...+.+|+++++|+++++....+. |.+||. .+ . ...+.+..+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~- 228 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TG------------E-ISEYDIPTP- 228 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSST-
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CC------------c-EEEEECCCC-
Confidence 346777776 4443321 2234456899999999998887665554 788887 33 1 122223211
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
...+.+|+++++|+..++...++.|.+|+.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 234899999999997777767789999987
No 213
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.69 E-value=0.00094 Score=67.48 Aligned_cols=95 Identities=9% Similarity=-0.000 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.+.|.+||..+.........+...+.+|+|+|+|+++++...++. |.+||.... ........+.
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~--------------~~~~~~~~~~- 191 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN--------------NQVVLPFTDI- 191 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTC--------------CEEECCCSSC-
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCC--------------ceEeecccCC-
Confidence 356777765554433222233346788999999998888776665 899997653 1111111111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
..+.+|++++||.++++...++.|.+|+...
T Consensus 192 -~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 192 -TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp -CSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred -CCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 3488999999998888888889999998753
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.69 E-value=0.0034 Score=74.48 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=73.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCC-----------CCe------------------------EEEEEcCCCCEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHK-----------SPI------------------------SALCFDPSGILLVTASV 341 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~-----------~pI------------------------saLaFSPdG~lLATaS~ 341 (828)
+..+|.|.++|..+++++..++... .++ ..++|+|++.+|...+.
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 3456788888888888777665221 111 15789999888877654
Q ss_pred C-------------------------------------------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 342 Q-------------------------------------------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 342 D-------------------------------------------Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
+ |+ |..||+.++ +.++++.-+.
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~tG--------------~~~W~~~~~~ 477 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVAQ--------------KAAWSVEHVS 477 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTTT--------------EEEEEEEESS
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCCC--------------cEEeecCCCC
Confidence 2 44 778888776 4566664332
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
.+++..++.++.++++++.||++++||+.++...-.+.
T Consensus 478 ---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 478 ---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp ---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 25566788899999999999999999998864444444
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.68 E-value=0.00019 Score=80.00 Aligned_cols=89 Identities=10% Similarity=0.092 Sum_probs=72.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+|.|++||+.+......+..|..+|.++.+.+.. +|+++.||+ +.+||+..+ ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~~------------~~~---~~~--- 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRTK------------STK---QLA--- 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTTC------------CEE---EEE---
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccCC------------ccc---ccc---
Confidence 45899999999887777788888899998887653 888999997 899999875 111 221
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..|.++||||+| ++.+..||++++|+....
T Consensus 163 --~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 --QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp --ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred --CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 249999999999 788999999999977654
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.68 E-value=0.0077 Score=61.99 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEc----CCCCEEEEE-ecCCCEEEEEeCC-CCCCCCCCccCCCCceeEEEEE
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFD----PSGILLVTA-SVQGHNINIFKII-PGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFS----PdG~lLATa-S~DGt~I~IWdi~-~~~~~~~~~~~~~~~~~~l~~L 374 (828)
+.|..||.. ++... +..+......++|+ |+|+.|..+ ..++. |.+||+. .+ . ......+..+
T Consensus 153 ~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g---~------~~~~~~~~~~ 220 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPA---K------IENKKVWGHI 220 (314)
T ss_dssp EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETT---E------EEEEEEEEEC
T ss_pred CeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCC---c------cccceEEEEC
Confidence 466777765 54433 22333456889999 999765554 44554 8999975 22 0 0000112222
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
. +.....+..|+|++||+++++...++.|.+|+..+.
T Consensus 221 ~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 221 P-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp C-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred C-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence 1 111023788999999999998888999999987643
No 217
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.63 E-value=0.0032 Score=74.74 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=62.6
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEecCC----CEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003336 300 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHL 371 (828)
Q Consensus 300 dG~V~IwDl~s~~----~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG----t~I~IWdi~~~~~~~~~~~~~~~~~~~l 371 (828)
...|.+|++.++. .+.....|...+..+.|||||++|+..+.++ ..|.+||+..+ ....+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~------------~~~~~ 309 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG------------KIGPV 309 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT------------EECCC
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC------------CCccc
Confidence 3478899988765 2323334444588999999999998877654 35889998653 00001
Q ss_pred EEEecCCccccEEEEEEccCCCEEEEEeCCC----cEEEEecCCC
Q 003336 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 412 (828)
Q Consensus 372 ~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG----TVhIwdl~~~ 412 (828)
..|..+.. . +... ++|||++|+..+.++ .|.+|++...
T Consensus 310 ~~l~~~~~-~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 310 TALIPDLK-A-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEECSSS-S-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEecCCCC-c-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 22322221 2 3333 359999999988754 4888888764
No 218
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.60 E-value=0.003 Score=66.96 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=105.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccce
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~riLAVs--~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~p 192 (828)
+.|+.+|++||+.+.++ ++...+. |.+.++.|-++ .++.+++||+.|++.+.++...+. +
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------G--- 138 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------G--- 138 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------C---
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------e---
Confidence 56999999999999999 8776655 67764444333 378999999999999888854210 0
Q ss_pred eeeccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCC
Q 003336 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (828)
Q Consensus 193 iAlg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~ 272 (828)
.+ |++. +. .|
T Consensus 139 wG-----Lt~D-----------------------------g~-----------~L------------------------- 148 (268)
T 3nok_A 139 WG-----LCYW-----------------------------NG-----------KL------------------------- 148 (268)
T ss_dssp CC-----EEEE-----------------------------TT-----------EE-------------------------
T ss_pred eE-----EecC-----------------------------CC-----------EE-------------------------
Confidence 01 1111 00 00
Q ss_pred CCCCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CCC---CeEEEEEcCCCCEEEEEecCCCEEE
Q 003336 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HKS---PISALCFDPSGILLVTASVQGHNIN 347 (828)
Q Consensus 273 ~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~a--H~~---pIsaLaFSPdG~lLATaS~DGt~I~ 347 (828)
++ ++..++|.++|..+.+.+..+.. +.. .++.|.|. +|++.|..-.+ ..|.
T Consensus 149 ---------------------~v-SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s-~~I~ 204 (268)
T 3nok_A 149 ---------------------VR-SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS-SDVL 204 (268)
T ss_dssp ---------------------EE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC-SEEE
T ss_pred ---------------------EE-ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC-CeEE
Confidence 01 11256899999999999888874 322 34667777 88777655444 4588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEe---------cCCccccEEEEEEccCCCEEEEEeC
Q 003336 348 IFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 348 IWdi~~~~~~~~~~~~~~~~~~~l~~L~---------RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
+.|..++ ++...+.+. +.......+.|||+|+++.|.+++.
T Consensus 205 vIDp~TG------------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATG------------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTC------------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCC------------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9998876 455555553 1111234789999998777666554
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.55 E-value=0.00028 Score=78.67 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=74.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec----------CCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYV 369 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~----------DGt~I~IWdi~~~~~~~~~~~~~~~~~~ 369 (828)
++.|.+.|..+++.+.+++.-..| . |+|||||++|..++. ++ .|.+||..+. ...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~-~VsviD~~t~------------~v~ 122 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD-YVEVFDPVTL------------LPT 122 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTTTC------------CEE
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCC-EEEEEECCCC------------eEE
Confidence 579999999999999999866667 4 999999998877652 33 4899999886 122
Q ss_pred EEEEEe---cCCccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCCCCceee
Q 003336 370 HLYRLQ---RGLTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 370 ~l~~L~---RG~t~a~I~sIaFSpDg~~LAs~S~--DGTVhIwdl~~~gg~~~~ 418 (828)
....+- |......-..++|||||++|.++.. +++|.|+|+.+..-...+
T Consensus 123 ~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 123 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 222221 1111112346899999999998874 689999999875433333
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.54 E-value=0.0025 Score=75.61 Aligned_cols=84 Identities=14% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
.|.|..||+.+++.+.+++. ..++....+..+|.+++.++.||+ +++||+.++ +.++++.-+..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~~ 519 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGTG 519 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSSC
T ss_pred ccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCc-EEEEECCCC--------------ceeeeeeCCCC
Confidence 48999999999999988863 345555667888889999999997 899999987 45556643321
Q ss_pred cccEEEEEEccCCCEE-EEEeC
Q 003336 380 NAVIQDISFSDDSNWI-MISSS 400 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~L-As~S~ 400 (828)
..-.-+.|++||+.+ ++.+.
T Consensus 520 -~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 520 -VVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp -CCSCCEEEEETTEEEEEEEEC
T ss_pred -cccCCEEEEeCCEEEEEEecc
Confidence 112346678999754 44443
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.48 E-value=0.014 Score=66.35 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccC-C-CCeEEEEE--cCCCCEEEEEec-----CCCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAH-K-SPISALCF--DPSGILLVTASV-----QGHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH-~-~pIsaLaF--SPdG~lLATaS~-----DGt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
.....|.+||+.+++.+.++..- . .....|.| +|+|+++..+.. ....|.+|....+ . + ..
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g---~-----~--~~ 294 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG---K-----W--NA 294 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT---E-----E--EE
T ss_pred ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC---c-----e--eE
Confidence 34578999999999988888752 1 22344555 999998887775 4434666655332 0 0 01
Q ss_pred eEEEEEec----C-C---------ccccEEEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 003336 369 VHLYRLQR----G-L---------TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINP 411 (828)
Q Consensus 369 ~~l~~L~R----G-~---------t~a~I~sIaFSpDg~~LAs~S~-DGTVhIwdl~~ 411 (828)
..+..+.. + . ......+|.+||||++|-++.. .++|.+||+..
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 11111111 0 0 0123678999999999988775 68999999974
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.44 E-value=0.11 Score=52.37 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.+||. +++.... +..+...+.+|+++++|+++++...++. |.+||.. + . ...+.+..+
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~~-g------------~-~~~~~~~~~- 270 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITND-N------------T-IQEYQLQTE- 270 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECTT-S------------C-EEEEECCST-
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECCC-C------------c-EEEEECCcc-
Confidence 346777777 4443322 3345567899999999998887765555 7888873 3 1 223333222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
...+.+|++++||++.++.. . .|..|+.
T Consensus 271 -~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 -NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp -TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred -CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 23488999999998766654 4 6666654
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.40 E-value=0.06 Score=57.08 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=58.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCC-CCCccCCCCceeEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~-~~~~~~~~~~~~~l~~L~RG~t 379 (828)
+.|..+| +++. ..+..+......++|+|||+.|..+......|.+||+... .+ . ......+..+. +.
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-~Gl~------~~~~~~~~~~~-~~- 228 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-TGLP------TGKAEVFIDST-GI- 228 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-TCCB------SSCCEEEEECT-TS-
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-cCCc------ccCceEEEECC-CC-
Confidence 4455566 4443 2333333456789999999877655543344899998621 01 0 00112222331 11
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
......+++.+||++.++...++.|.+|+.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 123688999999998888777888999987
No 224
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.37 E-value=0.029 Score=58.55 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=44.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~riLAVs--~~~~I~IwDl~t~~~l~tL~t 173 (828)
..|+.+|++||+.+.++.++...+. |.+.++.|-+. .++.+++||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 6899999999999999998876644 45544444443 478999999999999888753
No 225
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.35 E-value=0.024 Score=62.74 Aligned_cols=98 Identities=8% Similarity=0.010 Sum_probs=59.6
Q ss_pred CCeEEEEECCCCcEEEE----eccCCC--CeEEEEEcCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 300 VGMVIVRDIVSKNVIAQ----FRAHKS--PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~----f~aH~~--pIsaLaFSPd-G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.+.|..||..++..... ..++.. |...|+|+|+ |.++++-...+ .|+.|+.... ...+.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~g~-------------~~~~~ 304 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPDGE-------------CEWFC 304 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTTCC-------------EEEEE
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecCCC-------------EEEEE
Confidence 46788888887653222 222222 2248999995 66666655554 4888876431 11111
Q ss_pred EE--ecCCc--------cccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003336 373 RL--QRGLT--------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (828)
Q Consensus 373 ~L--~RG~t--------~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~ 411 (828)
-. ..|.. -.....|+|+|||+++++-+ ..++|++|++..
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 00 00100 12378999999999888887 889999999753
No 226
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.34 E-value=0.0015 Score=71.81 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=68.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~---------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.|.++|..+++.+.+++.-..+ .++|||||+.|..+.. +...|.+||..+. ..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------------~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------------LPIA 111 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------------cEEE
Confidence 8999999999999999866556 8999999999988863 1234889999764 1222
Q ss_pred EEecC-----CccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCC
Q 003336 373 RLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPL 412 (828)
Q Consensus 373 ~L~RG-----~t~a~I~sIaFSpDg~~LAs~S~--DGTVhIwdl~~~ 412 (828)
++.-+ .+...-..++|||||++|.+++. +++|.++| .+.
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 22111 00012357999999999999884 47899999 654
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.31 E-value=0.26 Score=52.59 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=62.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+..+|.|..+|..+++.+..... .....+.. ++..|..++.+|. +..||..++ ..+++...
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG--------------~~~w~~~~ 305 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDR-VMALTIDGG--------------VTLWTQSD 305 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCC-EEEEETTTC--------------CEEEEECT
T ss_pred EecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCe-EEEEECCCC--------------cEEEeecc
Confidence 34678999999999998877653 33445444 3556677777887 789999876 34455431
Q ss_pred CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
. ....+..... .+..|.+++.+|.+++||..++
T Consensus 306 ~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 306 L-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp T-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred c-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 1 1111222222 3567888999999999998774
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.26 E-value=0.031 Score=66.36 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=39.9
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 346 I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
|..||+.++ +.++++.-+. .+..-.++..+..|++++.||++++||..++...-.++
T Consensus 457 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 457 LIAWDPVKQ--------------QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCC--------------CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 677777765 4556654332 23445677888999999999999999998854433444
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.21 E-value=0.00075 Score=74.57 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=70.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~---------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
.|.++|..+++.+.+|..-..| .++|||||++|..+.. ++..|.+||+.+. ..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------------~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------------LPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------------CEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------CEEE
Confidence 8999999999999999866667 7999999998888862 2345899999986 2333
Q ss_pred EEecC--C---ccccEEEEEEccCCCEEEEEeC--CCcEEE--EecCC
Q 003336 373 RLQRG--L---TNAVIQDISFSDDSNWIMISSS--RGTSHL--FAINP 411 (828)
Q Consensus 373 ~L~RG--~---t~a~I~sIaFSpDg~~LAs~S~--DGTVhI--wdl~~ 411 (828)
++.-+ . ....-..++|||||++|.++.. ..++.| +|+.+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 43212 0 0012346899999999999875 467888 88866
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.13 E-value=0.014 Score=68.91 Aligned_cols=95 Identities=6% Similarity=-0.010 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 300 VGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 300 dG~V~IwDl~s~~~--i~~f~aH~~pIsaLaFSPdG~lLATaS~D-Gt-~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
.+.|.++|+.++.. ...|..|...+. .|+|+|..|+....+ |. .|++||+..+ .+..+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------------~~~~l~ 366 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------------RVREVA 366 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------------EEEEEC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------------eeEEee
Confidence 35788899987654 345666766665 899999988766554 32 3788887643 122332
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~D----GTVhIwdl~~~ 412 (828)
-.. ...+..+++++|++.|+....+ +++.+||+...
T Consensus 367 ~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 367 LPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred cCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 111 1347788899999887776555 78999988653
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.07 E-value=0.0015 Score=73.77 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=71.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec----------CCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~----------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
+.|.++|..+++.+.+++.-..| .|+|||||++|..+.. ++ .|.++|..+. +...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~-~VsviD~~t~------------~vv~ 163 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD-YVEVFDPVTF------------LPIA 163 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTTTC------------CEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCC-EEEEEECCCC------------cEEE
Confidence 79999999999999999966667 7999999998887763 34 4899999876 2222
Q ss_pred EEEEe---cCCccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCCC
Q 003336 371 LYRLQ---RGLTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLG 413 (828)
Q Consensus 371 l~~L~---RG~t~a~I~sIaFSpDg~~LAs~S~--DGTVhIwdl~~~g 413 (828)
...+- |-.....-..++|||||++|.++.. +++|.|.|+.+..
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 22221 1000011346899999999999874 5899999998753
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.03 E-value=0.034 Score=66.07 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=41.6
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-----------E-EEEEEc-CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSP-----------I-YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~-----------V-~sV~~S-~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.-+|++||+.+.++..... + ..+... +++++.+.++.|+++|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5688999999999999865322 1 122333 4454556689999999999999888765
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.93 E-value=0.00025 Score=77.47 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSP-IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~p-Is-aLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
..+|.|..||..+++.+..++.+... +. +.+++ ++.+|++++.+|+ |..||..++ ..++++.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~-v~a~D~~tG--------------~~~w~~~ 119 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDI-WYVIDLLTG--------------EKQQTLS 119 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE-EEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCE-EEEEECCCC--------------cEEEEec
Confidence 35678999999888877666544211 10 11112 3446777788887 899999887 3445543
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.+. .+.++|++..|++++.|++++.||..++
T Consensus 120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSS
T ss_pred CCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence 221 2456789999999999999999999765
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.91 E-value=0.092 Score=55.42 Aligned_cols=99 Identities=6% Similarity=-0.018 Sum_probs=66.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG 377 (828)
.++.|.++|..+.+.+.+|..- .+. ...+++||+.|..+...++ |.++|..+. .......+. ++
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~-l~viD~~t~------------~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSI-LYEIDPHTF------------KLIKKHNVKYNG 148 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSE-EEEECTTTC------------CEEEEEECEETT
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCe-EEEEECCCC------------cEEEEEEECCCC
Confidence 4678999999999999999743 121 2446678887777665554 899998775 112211221 22
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
.....++.+.|. |++..+....+++|.+-|..+..
T Consensus 149 ~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 149 HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 222237788898 88777776678899998987753
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.87 E-value=0.15 Score=53.11 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=55.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-----t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+.|..+|..+++..... +......++|+|||+.|..+.... ..|.+|++... .......+.
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------------~l~~~~~~~ 234 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------------ALHDRRHFA 234 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------------EEEEEEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------------CccCCeEEE
Confidence 56777887666544333 334567899999999887776652 34889988653 001111111
Q ss_pred cCCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003336 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (828)
Q Consensus 376 RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl 409 (828)
.. .......|++.+||++.++. .+ .|++|+.
T Consensus 235 ~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~ 265 (305)
T 3dr2_A 235 SV-PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS 265 (305)
T ss_dssp CC-SSSCCCSEEECTTSCEEECC-SS-EEEEECT
T ss_pred EC-CCCCCCeEEECCCCCEEEec-CC-cEEEECC
Confidence 10 11224578999999955443 44 4888776
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.83 E-value=0.032 Score=65.22 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=68.1
Q ss_pred CeEEEEECCC--CcE-EEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCC---CCCCCccCCCCceeEEEEE
Q 003336 301 GMVIVRDIVS--KNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---LGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 301 G~V~IwDl~s--~~~-i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~---~~~~~~~~~~~~~~~l~~L 374 (828)
+.|.|.|..+ ++. +..+..-. ...++.|+|||++++.++.....|.|+|+.+.. .+.. +. ......++
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l---~~--~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA---DP--RSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC---CG--GGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc---Cc--ccceEEEc
Confidence 4599999998 555 67776433 345689999999888877665569999998530 0000 00 00122344
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.-|. .-..++|+|||....+.-.|++|-+|++..
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3343 267899999994455666899999999976
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.72 E-value=0.82 Score=48.58 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=60.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCC----eE---EEEEcC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 003336 296 DADNVGMVIVRDIVSKNVIAQFRAHKSP----IS---ALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (828)
Q Consensus 296 s~~~dG~V~IwDl~s~~~i~~f~aH~~p----Is---aLaFSP--dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~ 366 (828)
.+..+|.|..+|..+++.+..+...... +. .+.-+| .+..|..++.+|. +..+|..++
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG------------ 259 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSG------------ 259 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTC------------
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCC------------
Confidence 3456789999999999988777632110 00 011111 2455666677787 789998876
Q ss_pred ceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 367 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+++..-+ ....+.. ++..|.+++.++.+..||..++
T Consensus 260 --~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 260 --QIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp --CEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred --cEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 344554321 1333333 4667888889999999998764
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.70 E-value=0.082 Score=62.49 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=42.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE------------EEEEE-cCCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPI------------YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V------------~sV~~-S~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.-+|++||+.+.++...... ..+.+ .+++++.+.++.|+++|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 67889999999999988753211 12233 34555556689999999999999888765
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.49 E-value=0.2 Score=58.12 Aligned_cols=29 Identities=3% Similarity=-0.066 Sum_probs=21.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003336 386 ISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (828)
Q Consensus 386 IaFSpDg~~LAs~S~DGTVhIwdl~~~gg 414 (828)
..+...+..|.+++.||++++||..++..
T Consensus 469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 469 GTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp BCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 33444567778899999999999987533
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.47 E-value=0.11 Score=55.06 Aligned_cols=97 Identities=8% Similarity=-0.076 Sum_probs=65.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE-ecC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L-~RG 377 (828)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..+...++ |.++|..+. +....... .+|
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~-l~~iDp~T~------------~v~~~I~V~~~g 177 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTM-LTFHEPDGF------------ALVGAVQVKLRG 177 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSE-EEEECTTTC------------CEEEEEECEETT
T ss_pred cCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCE-EEEEcCCCC------------eEEEEEEeCCCC
Confidence 4578999999999999999853332 233467888887766554 889998775 12222222 233
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....+..+.|. ||+..|....+.+|.+-|..+.
T Consensus 178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred cccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 222236778888 8887777767888888887664
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.46 E-value=0.077 Score=56.00 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=63.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE-ecC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L-~RG 377 (828)
.++.+.+||..+.+.+.+|+.-... ..+++||+.|..++..++ |.++|..+. +....... ..|
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~-i~~iDp~T~------------~v~~~I~V~~~g 168 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPV-LRFLDPESL------------TPVRTITVTAHG 168 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSE-EEEECTTTC------------SEEEEEECEETT
T ss_pred eCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCe-EEEEcCCCC------------eEEEEEEeccCC
Confidence 4578999999999999999854332 344467777776655544 888888765 12222222 112
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....+..+.|. ||+..|..-.+.+|.+.|..+.
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence 221236678887 8887777777888888887664
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.37 E-value=0.13 Score=60.75 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..+|.|..||+.+++.+..++.+. ++....+...|.+|+.++.||. +++||..++ +.+++++-+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG--------------~~l~~~~~~ 498 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQ 498 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECS
T ss_pred CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhcC--------------hhheEecCC
Confidence 345899999999999988877543 3333445567888999999997 899999887 445555433
Q ss_pred CccccEEEEEEccCCC-EEEEEeC
Q 003336 378 LTNAVIQDISFSDDSN-WIMISSS 400 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~-~LAs~S~ 400 (828)
.. ..-.-+.+..||+ |+++++.
T Consensus 499 ~~-~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 499 SG-IVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEEC
T ss_pred CC-cccCceEEEECCEEEEEEEec
Confidence 11 0112355667887 6666553
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.35 E-value=0.016 Score=68.50 Aligned_cols=110 Identities=9% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEecCC------------CEEEEEeCCCCCCCCCCccCCC
Q 003336 299 NVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG------------HNINIFKIIPGILGTSSACDAG 365 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~-f~aH~~pIsaLaFSPdG~lLATaS~DG------------t~I~IWdi~~~~~~~~~~~~~~ 365 (828)
....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.+. ..|.+|++.+. .
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~----------~ 219 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA----------Q 219 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSC----------G
T ss_pred ceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCC----------c
Confidence 346899999999986543 2211 12567899 999999888773 34788888764 0
Q ss_pred CceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCCC-CceeeccCC
Q 003336 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPLG-GSVNFQPTD 422 (828)
Q Consensus 366 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D----GTVhIwdl~~~g-g~~~~~~H~ 422 (828)
.....++... +.....+.+++|||||++|+..+.+ ..++++|+.... ....+..+.
T Consensus 220 ~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 220 EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 1123444331 1012236789999999999776543 478889987653 334555443
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.31 E-value=0.28 Score=50.55 Aligned_cols=91 Identities=12% Similarity=0.160 Sum_probs=55.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
+.|..+|. +++.+..+......+.++.++++|++.+ ++.+|. |..||. .+ ..++.+.-+ .
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~g--------------~~~~~~~~~--~ 294 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-DG--------------TEKWNFETG--S 294 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-TS--------------CEEEEEECS--S
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-CC--------------cEEEEEEcC--C
Confidence 44555553 4555556655544455677888887554 556665 678874 33 233333222 2
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
..+.++.+.+|+++. .++.+|.+++......
T Consensus 295 ~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 295 WIIATPVIDENGTIY-FGTRNGKFYALFNLEH 325 (330)
T ss_dssp CCCSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred ccccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence 346778888888754 5889999999887653
No 245
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.08 E-value=0.032 Score=58.27 Aligned_cols=84 Identities=11% Similarity=-0.063 Sum_probs=56.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
...+.|..||. +++ +..+..+...+..++|+|+|+++++...++. |.+|+.. + ....+.....+
T Consensus 64 ~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g------------~~~~~~~~~~~ 127 (305)
T 3dr2_A 64 LVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-G------------QAHLLVGRYAG 127 (305)
T ss_dssp TTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-S------------CEEEEECEETT
T ss_pred CCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-C------------CEEEEEeccCC
Confidence 34678999998 444 4566667778999999999997776555444 7888864 3 12232222222
Q ss_pred CccccEEEEEEccCCCEEEE
Q 003336 378 LTNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs 397 (828)
.....+.+++|+|||++.++
T Consensus 128 ~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EECSCCCCEEECTTSCEEEE
T ss_pred CccCCCCCEEECCCCCEEEe
Confidence 21223778999999998886
No 246
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.08 E-value=0.056 Score=57.69 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCC-CCEEEEEe---cCCCEEEEEeCCCCCCCCCC----ccCCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPS-GILLVTAS---VQGHNINIFKIIPGILGTSS----ACDAG 365 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH------~~pIsaLaFSPd-G~lLATaS---~DGt~I~IWdi~~~~~~~~~----~~~~~ 365 (828)
++.|.+||+.+++.+..+..+ ...+..|+|+|+ |.++++-+ .++. |.+||+.++...... .....
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCEEEEecCCCccccc
Confidence 468999999999877776532 235688999986 55666655 4555 889998765110000 00000
Q ss_pred C-----ceeEEEEEec-CC---ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 366 T-----SYVHLYRLQR-GL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 366 ~-----~~~~l~~L~R-G~---t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
. ....++.... |. ....+..|+||||+++|..+..+++ +||.+.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 0 0000000000 00 0012688999999999998887775 666664
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.06 E-value=0.6 Score=48.62 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=63.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG 377 (828)
.++.+.+||..+.+.+.+|+.-..+ ..+.+||+.|..+...++ |.++|..+. +......+. +|
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~-l~~iDp~t~------------~~~~~I~V~~~g 146 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAV-IRKLDPDTL------------QQVGSIKVTAGG 146 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSE-EEEECTTTC------------CEEEEEECEETT
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCe-EEEEeCCCC------------eEEEEEEEccCC
Confidence 3578999999999999999854444 233467776666665555 889998775 122222221 22
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....+..+.|. +|+..|..-.+..|.+-|..+.
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCC
Confidence 221236677766 7887777767778888887764
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.01 E-value=0.22 Score=57.92 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=56.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.|..||+.+++.+-.++.+. ++..-.+...|.+++.++.||+ ++.||..++ +.|++++-+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG--------------~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSG--------------KELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCCC--------------CEEEEecCCC
Confidence 46899999999999988776442 2222122234667888999997 899999987 5666665332
Q ss_pred ccccEE--EEEEccCCC-EEEEEeC
Q 003336 379 TNAVIQ--DISFSDDSN-WIMISSS 400 (828)
Q Consensus 379 t~a~I~--sIaFSpDg~-~LAs~S~ 400 (828)
.|. -+.|..||+ ||++.+.
T Consensus 528 ---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 ---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ---CcccCceEEEECCEEEEEEEcc
Confidence 232 367788887 5555544
No 249
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.87 E-value=2.7 Score=45.95 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=43.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCC
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 164 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~riLAVs~~~~I~IwDl~t 164 (828)
++++++|+.+.+.+++..++..|.-=+| +.+.|+...+..||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 7899999999999999999988876666 68999998899999999975
No 250
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.69 E-value=1.6 Score=47.91 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCeEEEEEC-------CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003336 300 VGMVIVRDI-------VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (828)
Q Consensus 300 dG~V~IwDl-------~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~ 372 (828)
+|.+..|++ .+.+.+++|.-- +.+..+..++....|..+-.+ .-|..++..+. +. .....+.
T Consensus 152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~-------~~~~~v~ 220 (355)
T 3amr_A 152 EGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GG-------SNGTVID 220 (355)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SC-------SCCEEEE
T ss_pred CCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CC-------CCceEEE
Confidence 366777766 234677888754 467788899988888888887 33444444342 10 0123333
Q ss_pred EEecCCccccEEEEEE--ccCCC-EEEEEe-CCCcEEEEecC
Q 003336 373 RLQRGLTNAVIQDISF--SDDSN-WIMISS-SRGTSHLFAIN 410 (828)
Q Consensus 373 ~L~RG~t~a~I~sIaF--SpDg~-~LAs~S-~DGTVhIwdl~ 410 (828)
.+.-+...+.+..|++ .+|++ ||+++| .+.+.+|||..
T Consensus 221 ~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 221 RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3323433456888988 67777 677766 67899999996
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.32 E-value=0.11 Score=53.77 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.++.|..+|.. ++.+..+..+...+.++.++++|.+++.. +. |..|| ..+ ..++++..+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g--------------~~~~~~~~~- 213 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDG--------------TEKWNFYAG- 213 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTS--------------CEEEEECCS-
T ss_pred CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCC--------------cEEEEEccC-
Confidence 34678888888 77777777666678889999999977765 55 78888 443 234444322
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003336 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~DGTVhIwd 408 (828)
...+.++++.+||... +++.++.+..|+
T Consensus 214 -~~~~~~~~~~~~g~l~-v~t~~~gl~~~~ 241 (330)
T 3hxj_A 214 -YWTVTRPAISEDGTIY-VTSLDGHLYAIN 241 (330)
T ss_dssp -SCCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred -CcceeceEECCCCeEE-EEcCCCeEEEEC
Confidence 2347788899888654 466677777775
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.26 E-value=1.5 Score=51.27 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=20.3
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCC
Q 003336 389 SDDSNWIMISSSRGTSHLFAINPLG 413 (828)
Q Consensus 389 SpDg~~LAs~S~DGTVhIwdl~~~g 413 (828)
...+..|.+++.||.++.||..++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCC
T ss_pred EecCCEEEEECCCCeEEEEECCCCC
Confidence 3466778889999999999998753
No 253
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.07 E-value=6 Score=44.83 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=117.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCCC-ceEEEEEcCCCccCCCCCCCCCcccceee
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~riLAVs~~~~I~IwDl~t~-~~l~tL~t~p~~~~~p~~~~~~~~~~piA 194 (828)
++++++|+.+.+.+++..++..|.-=+| +.+.|+...+..||-|++... ...+.+.-|++-.
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~---------------- 149 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA---------------- 149 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT----------------
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc----------------
Confidence 7899999999999999999887765555 689999999999999999742 2233333332110
Q ss_pred eccceEEEeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCC
Q 003336 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (828)
Q Consensus 195 lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~ 274 (828)
+.+.+.|..++-..| . +..||..
T Consensus 150 -~~QIInY~~d~~~kW-------------------------~----------~l~GI~~--------------------- 172 (494)
T 1bpo_A 150 -GCQIINYRTDAKQKW-------------------------L----------LLTGISA--------------------- 172 (494)
T ss_dssp -TCEEEEEEECTTSSE-------------------------E----------EEEEEEE---------------------
T ss_pred -cceEEEEEECCCCCe-------------------------E----------EEEeecc---------------------
Confidence 124445543211000 0 0112100
Q ss_pred CCcccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---CCEEEEEecC--CCEEEEE
Q 003336 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASVQ--GHNINIF 349 (828)
Q Consensus 275 ~si~sa~~~~k~~g~~~g~~~s~~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd---G~lLATaS~D--Gt~I~IW 349 (828)
.++.-.|.+.+|..+.+ .-..+.+|...-..+.+.-+ .++|+-|... |..++|-
T Consensus 173 --------------------~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~ 231 (494)
T 1bpo_A 173 --------------------QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (494)
T ss_dssp --------------------ETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred --------------------cCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 00112478999998754 34667888654444433321 2356656553 3348999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEEecCC--ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003336 350 KIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (828)
Q Consensus 350 di~~~~~~~~~~~~~~~~~~~l~~L~RG~--t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~~ 419 (828)
++...+.+.. .+ ..+...+.--. ...--..+..|+.-..+-.-+.-|-+|+||+.+......-+
T Consensus 232 Ei~~~~~~~~-~f-----~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 232 EVGTPPTGNQ-PF-----PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ECSCCCTTCC-CC-----CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EcCCCccCCC-Cc-----cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 8854311111 01 01112221100 00013457788877889999999999999999876654433
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.06 E-value=0.53 Score=54.52 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=52.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.|..||+.+++.+..++... ++....+...|.++..++.||+ |+.||..++ +.+++++-+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGY-LKALDNKDG--------------KELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCe-EEEEECCCC--------------CEEEEEeCCC
Confidence 46899999999999988876432 3333333445666777899997 899999887 4556664332
Q ss_pred ccccEEEEEEccCCCEEEE
Q 003336 379 TNAVIQDISFSDDSNWIMI 397 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs 397 (828)
.. .-.-+.|..||+.++.
T Consensus 506 ~~-~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 506 GG-IGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CC-CSCCEEEEETTEEEEE
T ss_pred Cc-EeeeEEEEECCEEEEE
Confidence 11 1122446677764443
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.53 E-value=3.2 Score=48.17 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=41.2
Q ss_pred EEEEEECCCCcEEEEEeCCCCE----------EEEEEc-CCEEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 118 VVHFYSLRSQSYVHMLKFRSPI----------YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~s~V----------~sV~~S-~riLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
.|.-+|++||+.+.++....+. ..+... .++++.+.++.|+.+|+.|++.+.+...
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3888899999999988764321 222333 4555556789999999999999887754
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.52 E-value=0.26 Score=57.68 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC--------------CEEEEEeCCCCC----CCCC
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--------------HNINIFKIIPGI----LGTS 359 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG--------------t~I~IWdi~~~~----~~~~ 359 (828)
..++.|.+.|..+.+.+.++.--. .-.-++++|||+++++++.+. ..|.|+|..... .|..
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 456799999999999999987433 235678999999999998664 235566543310 0000
Q ss_pred CccCCCCceeEEE------------EEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 003336 360 SACDAGTSYVHLY------------RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (828)
Q Consensus 360 ~~~~~~~~~~~l~------------~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~ 412 (828)
.. -.. ..+. .+.-|. ...+|.|||||+++.++. .+.+|+++|+.+.
T Consensus 251 ~~---i~~-V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 251 QE---LNG-VKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EE---ETT-EEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eE---ECc-EEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 00 000 1111 121121 135799999999988776 6789999999854
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.28 E-value=4.8 Score=46.96 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.2
Q ss_pred CEEEEEEC-CCCcEEEEEeCCCC------------EEEEEE---cCC----EEEEEeCCEEEEEECCCCceEEEEEc
Q 003336 117 TVVHFYSL-RSQSYVHMLKFRSP------------IYSVRC---SSR----VVAICQAAQVHCFDAATLEIEYAILT 173 (828)
Q Consensus 117 ~tVrlWDL-~Tg~~V~tL~f~s~------------V~sV~~---S~r----iLAVs~~~~I~IwDl~t~~~l~tL~t 173 (828)
+.|.-+|+ +||+.+.+...... ...+.+ ..+ +++...++.++++|+.|++.+.+...
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56788899 99999998876432 122344 234 55556789999999999998877654
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.85 E-value=11 Score=39.61 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=54.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
+.|.+.|+........+.........|+++|++..|.-+.... ..|..+++... ..... ...+.
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-------------~~~~~-~~~~~- 163 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYSL-VTENI- 163 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEEEE-ECSSC-
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-------------CeEEE-EECCC-
Confidence 4677777765433333333334568999999655554444432 33666665321 12211 11111
Q ss_pred cccEEEEEEccCCCEEEEEe-CCCcEEEEecC
Q 003336 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAIN 410 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~ 410 (828)
..-..|+|++++..|-.+. ..++|..+++.
T Consensus 164 -~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 164 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 2368999999877665554 55789999986
No 259
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.70 E-value=9.1 Score=38.43 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-C
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-S 400 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~ 400 (828)
.....|+|+|++..|..+......|.++|.... .+..+..+. ..-..|++. +.+|..+. .
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---------------~~~~~~~~~--~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------------GRRKVLEGL--QYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------------EEEEEEECC--CSEEEEEEE--TTEEEEEETT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---------------ceEEEecCC--CCceEEEEe--CCEEEEEECC
Confidence 346789999998777666666556889987642 111121222 124566654 45555544 5
Q ss_pred CCcEEEEecCCC
Q 003336 401 RGTSHLFAINPL 412 (828)
Q Consensus 401 DGTVhIwdl~~~ 412 (828)
.+.|.+++....
T Consensus 228 ~~~v~~~d~~~g 239 (267)
T 1npe_A 228 TNSVIAMDLAIS 239 (267)
T ss_dssp TTEEEEEETTTT
T ss_pred CCeEEEEeCCCC
Confidence 688888888654
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.63 E-value=2.5 Score=49.32 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=31.9
Q ss_pred EEEEEECCCCcEEEEEeCC---CCEEEEEE-cCCEEEEEe--C-----CEEEEEECCCCc
Q 003336 118 VVHFYSLRSQSYVHMLKFR---SPIYSVRC-SSRVVAICQ--A-----AQVHCFDAATLE 166 (828)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~---s~V~sV~~-S~riLAVs~--~-----~~I~IwDl~t~~ 166 (828)
.|.+||+.+++....-..+ ....++.+ ++++++++. + ..+.+||..+.+
T Consensus 266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 5999999998765432222 22334455 678887754 2 468899988765
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.26 E-value=12 Score=38.76 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCEEEEEec----------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCC
Q 003336 324 ISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (828)
Q Consensus 324 IsaLaFSPdG~lLATaS~----------DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 393 (828)
...|+++++|++.++... .+. |.+||.. + .....+....|.....+..+++ .+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~-G------------~~~~~~~~~~g~~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFDEF-G------------NILEVIPLPPPFAGEHFEQIQE-HDGL 295 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEECTT-S------------CEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEECCC-C------------CEEEEEECCCCCccccceEEEE-eCCE
Confidence 677999999998877654 233 4555532 2 2233344434432234677777 4676
Q ss_pred EEEEEeCCCcEEEEecCC
Q 003336 394 WIMISSSRGTSHLFAINP 411 (828)
Q Consensus 394 ~LAs~S~DGTVhIwdl~~ 411 (828)
+.++....+.|.+|++..
T Consensus 296 L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECSSCSEEEEEEC--
T ss_pred EEEeecCCCceEEEeccc
Confidence 666666788999999864
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=92.05 E-value=0.39 Score=57.34 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=58.6
Q ss_pred CeEEEEECCCC-cEEE-EeccCCCCeEEEEEcCCCCEEEEEecCC----CEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 301 GMVIVRDIVSK-NVIA-QFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 301 G~V~IwDl~s~-~~i~-~f~aH~~pIsaLaFSPdG~lLATaS~DG----t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
..|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.++ ......++..
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~----------~~~~~lv~~~ 267 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL----------QSEDVCLYEE 267 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC----------GGGCEEEEEC
T ss_pred EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC----------chhcEEEEec
Confidence 47999999998 6321 1211 134688999999888777652 23566666543 0011344432
Q ss_pred ecCCccccEEEEEEccCCCEEEEEeCC---CcEEEEecCCC
Q 003336 375 QRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 412 (828)
Q Consensus 375 ~RG~t~a~I~sIaFSpDg~~LAs~S~D---GTVhIwdl~~~ 412 (828)
. . .....++.|||||++|+..+.+ ..+.++|+...
T Consensus 268 ~--~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 268 H--N-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp C--C-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred C--C-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 1 1235688999999999987643 24666677653
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=90.66 E-value=4.5 Score=40.74 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=59.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..+.|.++|+........+.........|+|+|++..|..+......|.++++... ....+ +..+.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------------~~~~~--~~~~~ 121 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------------QRRVL--FDTGL 121 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSSC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC------------CEEEE--EECCC
Confidence 35689999987765444443333467899999986656555554445888887532 11222 11222
Q ss_pred ccccEEEEEEccCCCEEEEEeC---CCcEEEEecC
Q 003336 379 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAIN 410 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~---DGTVhIwdl~ 410 (828)
.....|+|+|++.+|..+.. .++|.++++.
T Consensus 122 --~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 122 --VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp --SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred --CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 23689999997666655543 3577777765
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.60 E-value=2 Score=44.75 Aligned_cols=81 Identities=12% Similarity=0.193 Sum_probs=51.6
Q ss_pred CCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEc
Q 003336 310 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (828)
Q Consensus 310 s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 389 (828)
..+.+..|... .....++|+|+|+++++-...++ |..||.... ......+ + .....|+|+
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~-------------~~~~~~~--~---~~p~gia~~ 80 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN-------------QQIHATV--E---GKVSGLAFT 80 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC-------------EEEEEEC--S---SEEEEEEEC
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc-------------eEEEEeC--C---CCceeEEEc
Confidence 45566777654 35678999999998877666665 677775432 2222222 1 248899999
Q ss_pred cCCCEEEEEeCCCc--EEEEecC
Q 003336 390 DDSNWIMISSSRGT--SHLFAIN 410 (828)
Q Consensus 390 pDg~~LAs~S~DGT--VhIwdl~ 410 (828)
+||+++++...... |..|+..
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECT
T ss_pred CCCcEEEEeccCCcceEEEEcCC
Confidence 99997776654334 4444443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.51 E-value=22 Score=38.49 Aligned_cols=94 Identities=5% Similarity=-0.042 Sum_probs=50.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
.|.+.|+........+.........|+++|++..|.-+.... ..|..+++... ....+ +..+.
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~~-- 245 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS------------GRRII--ADTHL-- 245 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC--
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC------------CcEEE--EECCC--
Confidence 444444443322222333334568899999766555544433 44666665421 11111 11222
Q ss_pred ccEEEEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003336 381 AVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 411 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~-S~DGTVhIwdl~~ 411 (828)
..-..|+|+|++..|-.+ +..++|..+++.-
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 236789999877666554 4557788888753
No 266
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.54 E-value=2.6 Score=47.47 Aligned_cols=108 Identities=11% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCeEEEEECCCCcEEEEeccC----CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003336 300 VGMVIVRDIVSKNVIAQFRAH----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH----~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~ 375 (828)
+..||.-++.....-+.++.- -..|..|..||+|++||..+.. .|.|-.+..+.......+. .+. .+.+.++
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~-~~~-~q~~ty~ 115 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSI-QDA-FQIFHYS 115 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHH-HHT-TEEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCccccc-ccc-cceeEEE
Confidence 467888887744333444422 2367889999999999999876 3899998743111110000 001 1222333
Q ss_pred cCCc----cccEEEEEEccC---CCEEEEEeCCCcEEEEecCC
Q 003336 376 RGLT----NAVIQDISFSDD---SNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 376 RG~t----~a~I~sIaFSpD---g~~LAs~S~DGTVhIwdl~~ 411 (828)
-|.. ...|..+-|.|- +..|++-.+|++|++||+..
T Consensus 116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 2321 345999999994 56899999999999999986
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=87.62 E-value=35 Score=37.09 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=55.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-cC-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS-~D-Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
+.|.+.|+........+...-.....|+++|.+.+|.-+. .+ +. |..+++.-. ....+ +..+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~~--~~~~l 245 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSL--VTENI 245 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSC------------SCEEE--ECSSC
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCC------------ccEEE--EECCC
Confidence 4677777765554444443344578999999655444444 32 44 666666432 11121 11222
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003336 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~ 411 (828)
..-..|+|++++..|-.+. ..++|..+++.-
T Consensus 246 --~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 246 --QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 2368999999887776654 457888888854
No 268
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=87.17 E-value=54 Score=38.68 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCCeEEEEECCCCcEEEEecc--------CCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003336 299 NVGMVIVRDIVSKNVIAQFRA--------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~a--------H~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~ 370 (828)
..|-|..||..+++....... ....|.+|+.+++|++|-.|..++- |.+||..++ ...+
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~------------~~~~ 441 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG------------QVEN 441 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC------------CEEE
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC------------cEEE
Confidence 344578888877654332211 1357999999999994444555444 788998765 1122
Q ss_pred EEEE-ecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 371 LYRL-QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 371 l~~L-~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
+.. ..+.....|.+|+..++|++.+.+. . -+.+|+...
T Consensus 442 -~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~ 480 (795)
T 4a2l_A 442 -FNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ 480 (795)
T ss_dssp -ECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT
T ss_pred -eecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC
Confidence 111 0011223599999999998655443 4 477777654
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=86.88 E-value=35 Score=36.27 Aligned_cols=95 Identities=5% Similarity=-0.048 Sum_probs=52.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DG-t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
+.|.+.|+........+.........|+++|++..|.-+.... ..|..+++... .... .+..+.
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~~-~~~~~~- 202 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRRI-IADTHL- 202 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCEE-SCCSSC-
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-------------CcEE-EEECCC-
Confidence 4566666654433333333334568899999655444444433 33666665421 1111 111122
Q ss_pred cccEEEEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~-S~DGTVhIwdl~~ 411 (828)
..-..|+|+|++..|-.+ +..++|..+++.-
T Consensus 203 -~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 -FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 236889999877666554 4557888888763
No 270
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=86.51 E-value=24 Score=44.38 Aligned_cols=96 Identities=10% Similarity=0.131 Sum_probs=60.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
.+|+|||+...+.+..-..+-..|..+...-.|.+++.|+.... |.++..... ...+..+-|...+
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~-------------~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPM-------------EGNFEEIARDFNP 969 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETT-------------TTEEEEEEECCSC
T ss_pred CEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC-------------CCeEEEEEeeccc
Confidence 47899998876544411111112333334345778888877654 555543322 1256666676666
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
..+.+++|=.++ .++.+..+|.++++...+
T Consensus 970 ~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 970 NWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp BCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred ccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 668999997665 666788999999999976
No 271
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.26 E-value=9.5 Score=49.01 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCC
Q 003336 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 164 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~riLAVs~~~~I~IwDl~t 164 (828)
++++++|+.+.+.+++..|+.+|.-=+| +.+.|+...+..|+-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 7899999999999999999888765566 68899998899999999964
No 272
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=84.04 E-value=3.9 Score=44.48 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCeEEEEECC---CCcEEEEec--cCC-----------CCeEEEEEcCCCCEEEEEecC-CCEEEEEeCCCCCCCCCCc
Q 003336 299 NVGMVIVRDIV---SKNVIAQFR--AHK-----------SPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSA 361 (828)
Q Consensus 299 ~dG~V~IwDl~---s~~~i~~f~--aH~-----------~pIsaLaFSPdG~lLATaS~D-Gt~I~IWdi~~~~~~~~~~ 361 (828)
.+..|..+|+. +++.+..+. +.. .....|+.+++|...+|.+.. +. ||.+.+. +
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd--G---- 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD--G---- 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT--S----
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC--C----
Confidence 45689999999 777665443 221 247889999999999999987 64 5655553 1
Q ss_pred cCCCCceeEEEEEec--CCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 362 CDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 362 ~~~~~~~~~l~~L~R--G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
.....+-+.. ..+..-...|+|.|||+.|++....|.+..||+.
T Consensus 169 -----~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 -----KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -----CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -----CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1112222222 1111226689999999999988779999999987
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=83.76 E-value=47 Score=34.98 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=52.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t 379 (828)
+.|.++|+........+.........|+++|.+..|.-+.. ....|..+++.-. ....+ +..+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~l- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS------------SRFII--INSEI- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC-
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC------------CeEEE--EECCC-
Confidence 46777777644332223333345688999996555544442 2233555555321 11121 11222
Q ss_pred cccEEEEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003336 380 NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 411 (828)
Q Consensus 380 ~a~I~sIaFSpDg~~LAs~-S~DGTVhIwdl~~ 411 (828)
..-..|+|+|++..|-.+ +..+.|..+++.-
T Consensus 166 -~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 166 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 235799999977766555 4567888888863
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=83.61 E-value=2.1 Score=51.10 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=48.1
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEecC-C---CEEEEEeCCCC-CCCCCCccCCCCceeEEEEEecCCccccEEEEEEccC
Q 003336 319 AHKS-PISALCFD-PSGILLVTASVQ-G---HNINIFKIIPG-ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (828)
Q Consensus 319 aH~~-pIsaLaFS-PdG~lLATaS~D-G---t~I~IWdi~~~-~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 391 (828)
.|.. .+...+|| |||++||-+... | ..|+|+|+.++ ..- ... +.. ...+++||||
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------~~~---~~~-----~~~~~~WspD 231 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------ADK---VSG-----TNGEIVWGPD 231 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------CCC---EEE-----ECSCCEECSS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------Ccc---ccC-----ceeeEEEecC
Confidence 3443 68899999 999998865543 3 24899998764 110 001 111 1346889999
Q ss_pred CCEEEEEeCCC-----cEEEEecCC
Q 003336 392 SNWIMISSSRG-----TSHLFAINP 411 (828)
Q Consensus 392 g~~LAs~S~DG-----TVhIwdl~~ 411 (828)
|+.|+..+.|. .|.++++..
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCC
Confidence 99999888763 355556543
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=82.14 E-value=13 Score=38.58 Aligned_cols=101 Identities=7% Similarity=0.175 Sum_probs=68.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee--EEEE
Q 003336 297 ADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV--HLYR 373 (828)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~f~aH-~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~--~l~~ 373 (828)
.+.++.|...|.. ++.+..+.-. ......|++.++|.++++.-.++ .+.++++.... ... ....
T Consensus 45 ~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~-~l~~~~v~~~~-----------~i~~~~~~~ 111 (255)
T 3qqz_A 45 INKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDY-AIYVISLTPNS-----------EVKILKKIK 111 (255)
T ss_dssp EETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTT-EEEEEEECTTC-----------CEEEEEEEE
T ss_pred ECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCC-cEEEEEcCCCC-----------eeeeeeeec
Confidence 4557889999998 8888887522 24678899999998766644444 47888876540 111 2222
Q ss_pred Ee--cCCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 374 LQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 374 L~--RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
+. ....+.....|+|+|+++.|.++..+....||.+.
T Consensus 112 ~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 112 IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 21 11223347899999999988888888888888876
No 276
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.86 E-value=13 Score=38.41 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
..|.|..+|..+++....... ......|+|+|||+.|..+......|.+|++..... +....+..+ .
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~-~-- 229 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI-P-- 229 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC-S--
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC-C--
Confidence 457889999877764332221 123356999999996665544434488888864200 011222221 1
Q ss_pred ccccEEEEEEccCCCEEEEEeC
Q 003336 379 TNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
. ...|++.+||++.++...
T Consensus 230 --g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 230 --N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp --S-EEEEEECTTSCEEEEEEE
T ss_pred --C-CCCeEECCCCCEEEEecC
Confidence 2 577999999987666544
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=81.21 E-value=64 Score=34.75 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
+.|...|+........+...-..-..|+|+|++..|.-+......|..+|+... ..+.+ +..+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~--~~~~~-- 288 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAV--ISQGL-- 288 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------------SCEEE--ECSSC--
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------------eeEEE--EECCC--
Confidence 455556655332222222223345789999987777777766666788876432 11222 11221
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
.....|++ .++..+.+-...+.|..++...+.....+
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 23577888 44455556666777777775444333343
No 278
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=80.87 E-value=9.1 Score=41.79 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCeEEEEECCCC----cEEEEeccCC-CCeEEEEEcCCCCEEEEEec---C------------CCEEEEEeCCCCCCCCC
Q 003336 300 VGMVIVRDIVSK----NVIAQFRAHK-SPISALCFDPSGILLVTASV---Q------------GHNINIFKIIPGILGTS 359 (828)
Q Consensus 300 dG~V~IwDl~s~----~~i~~f~aH~-~pIsaLaFSPdG~lLATaS~---D------------Gt~I~IWdi~~~~~~~~ 359 (828)
...|.||++... ..+.++.+.. ...+.++++++|.+++|... | .. =+||.+.++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 357777776542 2334454332 35789999999999988652 1 11 234444432
Q ss_pred CccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCC
Q 003336 360 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (828)
Q Consensus 360 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~~g 413 (828)
..+. +..+.. .-+.|+||||+++|..+. ..++|+.|++...+
T Consensus 212 -------~~~~---~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 212 -------DVRV---VAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp -------CCEE---EEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -------eEEE---eecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1121 122322 257899999998776654 57899999998644
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=78.84 E-value=24 Score=36.37 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecC
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG 377 (828)
..+.|..||.... ....+.. ......|+|+++|+++++... ++..|..+|..++ ....+..+..
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g------------~~~~~~~~~~- 115 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG------------TVETLLTLPD- 115 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS------------CEEEEEECTT-
T ss_pred CCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC------------eEEEEEeCCC-
Confidence 4578888887653 3333332 245789999999997776543 2322445565544 2333333311
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003336 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 378 ~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~ 410 (828)
......+++.+++..+++-+.++.|.++|..
T Consensus 116 --~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 116 --AIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp --CSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred --ccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 1124567777777666665567877777754
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=78.75 E-value=4.7 Score=47.00 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred eEEEEECCCCc--EEEEec-cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 302 MVIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 302 ~V~IwDl~s~~--~i~~f~-aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.+||..+++ .+..+. .+..-..++++.++|++++.|+.++..+.+||..+. .-..+-.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~------------~W~~~~~~---- 283 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------------SWIPGPDM---- 283 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------------EEEECCCC----
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC------------ceeECCCC----
Confidence 68899998875 333343 233344567899999999999976556899998764 11111111
Q ss_pred cccc-EEEEEEccCCCEEEEEe-CC-----CcEEEEecCCC
Q 003336 379 TNAV-IQDISFSDDSNWIMISS-SR-----GTSHLFAINPL 412 (828)
Q Consensus 379 t~a~-I~sIaFSpDg~~LAs~S-~D-----GTVhIwdl~~~ 412 (828)
...+ -..+++-+|+++++.|+ .+ .++.+||..+.
T Consensus 284 ~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 1111 23466778999999998 44 57899998753
No 281
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=78.11 E-value=1.1e+02 Score=35.79 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 321 ~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
...|.+|+.+++|++.+....+| +..||.... . ...+....+.....|.+|+..++|++.+.+ .
T Consensus 494 ~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~~------------~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~ 557 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGTFGGG--VGIYTPDMQ------------L-VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G 557 (781)
T ss_dssp CSCEEEEEECTTCCEEEEESSSC--EEEECTTCC------------E-EEEECTTTTCSCSCEEEEEECTTSCEEEEE-T
T ss_pred cceeEEEEEcCCCCEEEEEcCCC--EEEEeCCCC------------e-EEEccCCCCCCCCeeEEEEECCCCCEEEEE-C
Confidence 35799999999999877655455 567876543 1 111221223334459999999999865544 4
Q ss_pred CCcEEEEecCC
Q 003336 401 RGTSHLFAINP 411 (828)
Q Consensus 401 DGTVhIwdl~~ 411 (828)
+|-+..|+...
T Consensus 558 ~Glv~~~d~~~ 568 (781)
T 3v9f_A 558 EGLVCFPSARN 568 (781)
T ss_dssp TEEEEESCTTT
T ss_pred CCceEEECCCC
Confidence 66546666543
No 282
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=76.74 E-value=1.2e+02 Score=35.53 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=59.4
Q ss_pred CCeEEEEECCCCcEEEEec-----cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003336 300 VGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~-----aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L 374 (828)
.+-|.++|..+++.. .+. .+...|.+|..+++|++.+... +| +.+||..++ ....+
T Consensus 426 ~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G--l~~~~~~~~---------------~~~~~ 486 (795)
T 4a2l_A 426 AGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA--LVRFNPEQR---------------SFTTI 486 (795)
T ss_dssp TTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC--EEEEETTTT---------------EEEEC
T ss_pred cCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc--eeEEeCCCC---------------eEEEc
Confidence 355888998877643 332 1345799999999999777655 55 678987654 11112
Q ss_pred ec-----CCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 375 QR-----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 375 ~R-----G~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
.. +.....|.+|...++|++.+.+. +-+.+|+...
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 11 12224599999999998666544 4577777654
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=75.87 E-value=9.6 Score=41.75 Aligned_cols=98 Identities=11% Similarity=0.225 Sum_probs=63.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC----CCE--EEEEecC---CCEEEEEeCCCCCCCCCCccCCCCce
Q 003336 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS----GIL--LVTASVQ---GHNINIFKIIPGILGTSSACDAGTSY 368 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPd----G~l--LATaS~D---Gt~I~IWdi~~~~~~~~~~~~~~~~~ 368 (828)
...+-+.|||+ +++.+..+.. +.+..|..-|+ |+. ||.++.. ...|.||++.+. .
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~------------ 110 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-N------------ 110 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-T------------
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-C------------
Confidence 44578999999 8889888864 45666666663 332 4444443 356999988643 0
Q ss_pred eEEEEEecC-----CccccEEEEEE--ccC-CC-EEEEEeCCCcEEEEecCC
Q 003336 369 VHLYRLQRG-----LTNAVIQDISF--SDD-SN-WIMISSSRGTSHLFAINP 411 (828)
Q Consensus 369 ~~l~~L~RG-----~t~a~I~sIaF--SpD-g~-~LAs~S~DGTVhIwdl~~ 411 (828)
..+..+-+. .....++.+|+ +|+ ++ ++.+...+|.+..|++..
T Consensus 111 ~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 112233110 11134788999 774 54 677888899999999965
No 284
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=74.84 E-value=1.8e+02 Score=36.52 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=58.7
Q ss_pred eEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 302 MVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH-~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
.|++.|...++.+..++.. ...|.+.+.+. .+++.++ .+. |.+|++..+ ....+.+. .-.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~-l~~fel~~~------------~L~~~~~~---~l~ 553 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRA-LYYLQIHPQ------------ELRQISHT---EME 553 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTE-EEEEEEETT------------EEEEEEEE---ECS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCE-EEEEEeeCC------------ceeeeccc---CCC
Confidence 4667776655566666543 34677766653 4666665 444 778887653 12222111 123
Q ss_pred ccEEEEEEccC------CCEEEEEeC-CCcEEEEecCC
Q 003336 381 AVIQDISFSDD------SNWIMISSS-RGTSHLFAINP 411 (828)
Q Consensus 381 a~I~sIaFSpD------g~~LAs~S~-DGTVhIwdl~~ 411 (828)
..|.++++.|. ++++|+|.. |+|++|+.+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 46999999863 579999996 99999999975
No 285
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=73.59 E-value=8 Score=45.22 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=40.3
Q ss_pred EEEEEcCCCCEEEEEecC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCE
Q 003336 325 SALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (828)
Q Consensus 325 saLaFSPdG~lLATaS~D----------Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 394 (828)
--|+|+|+|.|++.-..+ |.. .+|-..+. ...+++|-++...+++..++|+||++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn-~~~~~~~~-------------~g~~~rf~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNN-QMLCADPA-------------TGEIRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSC-EEEEECTT-------------TCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccc-eEEEEeCC-------------CCeEEEEEeCCCCccCcCeeECCCCCE
Confidence 559999999987764432 121 23433321 023566667777788999999999988
Q ss_pred EEEE
Q 003336 395 IMIS 398 (828)
Q Consensus 395 LAs~ 398 (828)
|.+.
T Consensus 545 lfvn 548 (592)
T 3zwu_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=72.87 E-value=1.7e+02 Score=35.22 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=55.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
.+.|.+.|+........+.........|+++|.+.+|.-+.. ....|.+.++.-. .+.. .+..+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------~~~~-lv~~~l 557 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYS-LVTENI 557 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEEE-EECSSC
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-------------ceEE-EEeCCC
Confidence 357888888755443444444456789999997544444443 3133666666422 1221 111222
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003336 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~~LAs~S-~DGTVhIwdl~~ 411 (828)
.....|++.+++.+|..+- ...+|..+++.-
T Consensus 558 --~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 558 --QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 2478999998777666654 446777777753
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=72.04 E-value=99 Score=35.19 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKI 351 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi 351 (828)
.-..|+|+|+|.+|..+....+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 45789999999987777777777777654
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=71.92 E-value=23 Score=39.11 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=56.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecC-C---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~D-G---t~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
+.|+.+|+.++.....+. .......|+|+++|++|..+... + ..+.+++.... . .....+..+
T Consensus 159 ~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-~---------~~~~~l~~~-- 225 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-F---------KVITELTKG-- 225 (430)
T ss_dssp EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-S---------CSEEEEEEC--
T ss_pred CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-e---------eeeeeeccC--
Confidence 788899998766543333 44567889999999955555542 2 12333332211 0 001122221
Q ss_pred CCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003336 377 GLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 377 G~t~a~I~sIaFSp-Dg~~LAs~S~DGTVhIwdl~~ 411 (828)
....+++++| ++.++++-...+.|..|+...
T Consensus 226 ----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 226 ----QNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp ----SSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred ----CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 1256799999 777777766778888888763
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=71.68 E-value=23 Score=38.42 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred CCCeEEEEECCCCcEEEE-ecc----CCC--CeEEEEE---cCCCCEEEEEec-------------CCCEEEEEeCC---
Q 003336 299 NVGMVIVRDIVSKNVIAQ-FRA----HKS--PISALCF---DPSGILLVTASV-------------QGHNINIFKII--- 352 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~-f~a----H~~--pIsaLaF---SPdG~lLATaS~-------------DGt~I~IWdi~--- 352 (828)
..|.|..||...+..... +.. ... .++.|.| +|+|++|+.+.. +. .+..||+.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~-~v~~~Dl~~~~ 111 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGAS-SFHSFNLPLSE 111 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCC-EEEEEESSCCT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCC-EEEEEcCCcCC
Confidence 457899999876544333 332 111 3578999 799999986442 33 47888987
Q ss_pred CCCCCCCCccCCCCceeEEEEEec---------CCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCC
Q 003336 353 PGILGTSSACDAGTSYVHLYRLQR---------GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (828)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~L~R---------G~t~a~I~sIaFSpDg~~LAs~S~D-GTVhIwdl~~~gg 414 (828)
++ .......|.. |......++|+..++|+.-++.+.- +. ||.+.+.|.
T Consensus 112 tg------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 112 NS------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp TC------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred CC------------CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 44 1122233311 1011238899999999999988876 55 777777654
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=71.31 E-value=12 Score=41.23 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=46.6
Q ss_pred eEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEE-EEeCC
Q 003336 324 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM-ISSSR 401 (828)
Q Consensus 324 IsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LA-s~S~D 401 (828)
...++++| +|.++++-...++ |..|+.... ....+..+..+ ..-..|+|+|||++|. +-...
T Consensus 228 p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~------------~~~~~~~~~~~---~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQ-VFRYDFTTQ------------ETTPLFTIQDS---GWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTE-EEEEETTTT------------EEEEEEECSSS---SCCEEEEECTTSSEEEEEETTT
T ss_pred ceEEEEeCCCCEEEEEECCCCE-EEEEECCCC------------cEEEEEEcCCC---CcceeEEEcCCCCEEEEEECCC
Confidence 45688999 7887777555554 788887653 11123332111 2357899999999554 44567
Q ss_pred CcEEEEecCC
Q 003336 402 GTSHLFAINP 411 (828)
Q Consensus 402 GTVhIwdl~~ 411 (828)
++|.+|+...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988764
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=70.44 E-value=1.2e+02 Score=32.70 Aligned_cols=102 Identities=6% Similarity=-0.091 Sum_probs=55.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccc
Q 003336 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (828)
Q Consensus 302 ~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a 381 (828)
.|...|+........+...-.....|+|+|++..|.-+......|..+|+... ..+.+... .+.. .
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~~~-~~~l-~ 291 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKRL-A 291 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CCEEEEEC-SSTT-S
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC------------ccEEEEeC-CCCC-C
Confidence 44555554332222222222456789999988888887776666888887532 12222221 1111 1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
.-..|++. .+..+.+-...++|..++..++.....+
T Consensus 292 ~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 292 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 24577773 3345555566678888876554444444
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=70.07 E-value=1.9e+02 Score=34.72 Aligned_cols=103 Identities=7% Similarity=-0.075 Sum_probs=54.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
+.|.+.++........+...-.....|++++.+..|.-+......|..+++.-. ..+.+..- .+..
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~------------~~~~v~~~-~~~l- 602 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKRL- 602 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC-TTTT-
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC------------ceEEEecC-CCcc-
Confidence 345556655433333333333467889999887777777776666788877432 11222211 1111
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~~ 418 (828)
..-..|++..+ +++.+-...++|...+...+.....+
T Consensus 603 ~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 603 AHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 12456666433 34444445567776665554444444
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=68.38 E-value=24 Score=37.72 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCC----CCEEEEEecCC----CEEEEEeCCCCCCCCCCccCCCCc
Q 003336 299 NVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPS----GILLVTASVQG----HNINIFKIIPGILGTSSACDAGTS 367 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~---aH~~pIsaLaFSPd----G~lLATaS~DG----t~I~IWdi~~~~~~~~~~~~~~~~ 367 (828)
..|.|.+++-.+.+.+..+. .-......|+|+|| |.+.++-+..+ +.|..|+.... . ...
T Consensus 49 ~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~---~------~~~ 119 (352)
T 2ism_A 49 RPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE---R------GVL 119 (352)
T ss_dssp TTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS---C------EEE
T ss_pred CCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC---C------cCc
Confidence 34889998822222333332 11345788999998 55555544321 33556665422 0 001
Q ss_pred eeEEEE-Eec-CCccccEEEEEEccCCCEEEEEeC
Q 003336 368 YVHLYR-LQR-GLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 368 ~~~l~~-L~R-G~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
.+.++. +.. ....+....|+|.|||.+.++.++
T Consensus 120 ~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 120 DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 122332 321 111122468999999976666543
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=67.03 E-value=29 Score=37.23 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCCeEEEEECCCCc-EEEEec---cCCCCeEEEEEcCC----CCEEEEEec---CC---CEEEEEeCCCCCCCCCCccCC
Q 003336 299 NVGMVIVRDIVSKN-VIAQFR---AHKSPISALCFDPS----GILLVTASV---QG---HNINIFKIIPGILGTSSACDA 364 (828)
Q Consensus 299 ~dG~V~IwDl~s~~-~i~~f~---aH~~pIsaLaFSPd----G~lLATaS~---DG---t~I~IWdi~~~~~~~~~~~~~ 364 (828)
..|.|+++|. +++ .+..+. .-......|+|+|+ |.+.++-+. ++ +.|..|+.... ...
T Consensus 47 ~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~------ 118 (354)
T 3a9g_A 47 RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFK------ 118 (354)
T ss_dssp TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-SCC------
T ss_pred CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-CcC------
Confidence 3488888873 443 333332 11245788999997 666666543 21 23555554432 000
Q ss_pred CCceeEEEE-EecCCccccEEEEEEccCCCEEEEEeC
Q 003336 365 GTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 365 ~~~~~~l~~-L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
....+.++. +..+ ..+.-..|+|.|||++.++.++
T Consensus 119 ~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 LKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCC
T ss_pred cCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECC
Confidence 001122222 3221 1123567999999987776544
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=66.90 E-value=1.2e+02 Score=31.21 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc-----ccEEEEEEccCCCEEE
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIM 396 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~-----a~I~sIaFSpDg~~LA 396 (828)
..+++|+|+|.-..|..-|.....+-++|..- .....+.|.+|... ..-..|+|.++|+..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly- 238 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY- 238 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-
Confidence 45789999996544444455666677888643 35666778776422 246899999999854
Q ss_pred EEeCCCcEEEEe
Q 003336 397 ISSSRGTSHLFA 408 (828)
Q Consensus 397 s~S~DGTVhIwd 408 (828)
++|...-+.+|.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 557777555553
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=66.17 E-value=46 Score=36.73 Aligned_cols=104 Identities=11% Similarity=0.033 Sum_probs=59.1
Q ss_pred CCCCeEEEEECCCCcEEEEe-ccCCC-CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE-
Q 003336 298 DNVGMVIVRDIVSKNVIAQF-RAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 374 (828)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~f-~aH~~-pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L- 374 (828)
...+.|+.+|..++..+..+ ..... .-..|+|+|+|+.|..+....+.|..++.... .+... ....+...
T Consensus 247 ~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-~~~~~------~~~~~ag~~ 319 (433)
T 4hw6_A 247 YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-TGKLA------VPYIVCGQH 319 (433)
T ss_dssp TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-TCCBC------CCEEEEECT
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-CcccC------cEEEEEecC
Confidence 34578999998877663333 22122 23469999999977666666666888776531 00000 00000000
Q ss_pred -ecCC--------ccccEEEEEE---------ccCCCEEEEEeCCCcEEEEe
Q 003336 375 -QRGL--------TNAVIQDISF---------SDDSNWIMISSSRGTSHLFA 408 (828)
Q Consensus 375 -~RG~--------t~a~I~sIaF---------SpDg~~LAs~S~DGTVhIwd 408 (828)
..|. .-..-..|+| .++|.+.++-+..+.|++++
T Consensus 320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0000 0112578999 77887777766777888776
No 297
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=65.88 E-value=41 Score=36.43 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe----cCCccccEEEEEEccC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----RGLTNAVIQDISFSDD 391 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~----RG~t~a~I~sIaFSpD 391 (828)
..-..|+|.|||++|+|--..|+ |++++...+ ....+..+. .|. .-..+|+|+||
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~~~g------------~~~~v~~~~~v~~~g~--~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDAKTG------------RKTELGEVPGVSPSGE--GGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECTTTC------------CEEEEEECTTCCCBTT--BSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEECCCC------------cEeeecccCceeecCC--CCceeeEeccc
Confidence 34578999999999888765776 667764433 122222221 111 23789999996
No 298
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=65.57 E-value=28 Score=38.94 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCc----cccEEEEEEccC---CCEE
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT----NAVIQDISFSDD---SNWI 395 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t----~a~I~sIaFSpD---g~~L 395 (828)
.-..|+|.|||++|++-...|. |++++...+ ....+..+..... ..-+.+|+|+|| +.+|
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g------------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGK-ILRVNPESG------------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCE-EEEECTTTC------------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCcEEEEEcCCCE-EEEEECCCC------------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 3468999999998888544334 566654333 1233333422111 123779999996 5555
Q ss_pred EEEe
Q 003336 396 MISS 399 (828)
Q Consensus 396 As~S 399 (828)
-++.
T Consensus 95 Yv~~ 98 (454)
T 1cru_A 95 YISG 98 (454)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=64.81 E-value=25 Score=39.68 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=52.9
Q ss_pred CCCCeEEEEEcCC---CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-----CCc--cccEEEEEEc
Q 003336 320 HKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-----GLT--NAVIQDISFS 389 (828)
Q Consensus 320 H~~pIsaLaFSPd---G~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R-----G~t--~a~I~sIaFS 389 (828)
...+|..+-|+|- |..|++=-.|++ ||+||+..... ... .|.+ |.. ...|.++||+
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~------------~P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQE------------KPI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTS------------CCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCC------------CCc-chhccccccCCCcccceEEEEEEc
Confidence 3578999999994 457888888887 99999986311 000 2211 110 1348999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCc
Q 003336 390 DDSNWIMISSSRGTSHLFAINPLGGS 415 (828)
Q Consensus 390 pDg~~LAs~S~DGTVhIwdl~~~gg~ 415 (828)
.++-.|-+.+....-.||.+.|+-..
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEESSCCCS
T ss_pred CCCcEEEEEecCCCCCEEEECCCCcc
Confidence 98876666553333356777776443
No 300
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.80 E-value=1.3e+02 Score=31.01 Aligned_cols=82 Identities=7% Similarity=-0.092 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..-..|+|+|++..|..+......|..+|+... ..+.+...... ...-..|++. .+..+.+-...
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~------------~~~~~~~~~~~--~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILEDEKR--LAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEECTTT--TSSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCC------------ceEEEeecCCc--cCCcEEEEEE-CCEEEEEECCC
Confidence 346789999988777777766566888887532 12222221111 1235678884 45555566667
Q ss_pred CcEEEEecCCCCCceee
Q 003336 402 GTSHLFAINPLGGSVNF 418 (828)
Q Consensus 402 GTVhIwdl~~~gg~~~~ 418 (828)
+.|..++..++.....+
T Consensus 229 ~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CeEEEEeCCCCcceEEE
Confidence 78888876554433343
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=64.68 E-value=32 Score=36.73 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=41.5
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---cCCccccEEEEEEccC---CCEEE
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWIM 396 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~---RG~t~a~I~sIaFSpD---g~~LA 396 (828)
.-..|+|+|||+++++- .+|+ |.+++ .+ ....+..+. .+ ......|+|+|| +.+|-
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g~-I~~i~--~g------------~~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPGR-IRLFR--EG------------RLSTYAELSVYHRG--ESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTTE-EEEEE--TT------------EEEEEEECCCCCST--TCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCeEEEEe-CCCe-EEEEE--CC------------CccEeecceEeecC--CCCceeEEECCCCCCCCEEE
Confidence 34689999999977764 4576 77777 33 112222221 11 123789999999 55544
Q ss_pred EEeC-C-----CcEEEEecC
Q 003336 397 ISSS-R-----GTSHLFAIN 410 (828)
Q Consensus 397 s~S~-D-----GTVhIwdl~ 410 (828)
++.. . ..|..|++.
T Consensus 94 v~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEECTTSSEEEEEEEEEC
T ss_pred EEEecCCCCCccEEEEEEeC
Confidence 4433 2 456666654
No 302
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=64.54 E-value=1.5e+02 Score=31.35 Aligned_cols=79 Identities=10% Similarity=-0.055 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.-..|+|+|++..|.-+......|..+|+... ..+.+.. .+. ..-..|++ .++....+-...+
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~------------~~~~~~~--~~~--~~P~giav-~~~~ly~td~~~~ 266 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAVIS--QGL--PHPFAITV-FEDSLYWTDWHTK 266 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEC--SSC--SSEEEEEE-ETTEEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC------------ceEEEEe--CCC--CCceEEEE-ECCEEEEecCCCC
Confidence 45789999987777777766666888887532 1122211 121 23577888 3445555555667
Q ss_pred cEEEEecCCCCCceee
Q 003336 403 TSHLFAINPLGGSVNF 418 (828)
Q Consensus 403 TVhIwdl~~~gg~~~~ 418 (828)
.|..++...+.....+
T Consensus 267 ~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 267 SINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEEccCCCccEEe
Confidence 7777664444333333
No 303
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=62.89 E-value=18 Score=40.07 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=45.6
Q ss_pred eEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEEecCCccccEEEEEEccCCCEEEE-EeC
Q 003336 324 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLTNAVIQDISFSDDSNWIMI-SSS 400 (828)
Q Consensus 324 IsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~-~~l~~L~RG~t~a~I~sIaFSpDg~~LAs-~S~ 400 (828)
...++++| +|.++++-...+. |+.+|...+ .. ..+... +.. ..-..|+|+||+++|.. -+.
T Consensus 230 P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g------------~~~~~~~~~--~~~-~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAM-ISSYDPATG------------TLTEEEVMM--DTK-GSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSE-EEEECTTTC------------CEEEEEEEC--SCC-SSCEEEEECTTSSEEEEEETT
T ss_pred CCEEEEeCCCCeEEEEECCCCE-EEEEECCCC------------eEEEEEecc--CCC-CCcccEEEeCCCCEEEEEeCC
Confidence 35588999 7887766555554 777777644 12 222222 221 12357999999995544 455
Q ss_pred CCcEEEEecCCC
Q 003336 401 RGTSHLFAINPL 412 (828)
Q Consensus 401 DGTVhIwdl~~~ 412 (828)
.+.|..+++...
T Consensus 294 ~~~I~~~~~d~~ 305 (433)
T 4hw6_A 294 KHCIYRVDYNRE 305 (433)
T ss_dssp TTEEEEEEBCTT
T ss_pred CCEEEEEeCCCC
Confidence 678998887643
No 304
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.00 E-value=29 Score=40.49 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCEEEEEecC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCC
Q 003336 323 PISALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~D----------Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 392 (828)
.-..|+|+++|.+.+..... |. -.||.+.+. .+. +..|-.+...+.+..++||||+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~----------tGe---l~~fl~~P~~aEpnGiafSPD~ 542 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA----------TGE---IRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT----------TCC---EEEEEECCTTCEEEEEEECTTS
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC----------CCe---EEEEEeCCCCccccCCEECCCC
Confidence 34569999999988843211 11 145555442 012 3344344444679999999999
Q ss_pred CEEEEE
Q 003336 393 NWIMIS 398 (828)
Q Consensus 393 ~~LAs~ 398 (828)
+.|.++
T Consensus 543 ktLfV~ 548 (592)
T 4a9v_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988776
No 305
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=54.86 E-value=88 Score=34.81 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=48.9
Q ss_pred CeEEEEECCCCc--EEEEecc------CCCCeEEEEEcC----CCCEEEEEec------C-----CCEEEEEeCCCCCCC
Q 003336 301 GMVIVRDIVSKN--VIAQFRA------HKSPISALCFDP----SGILLVTASV------Q-----GHNINIFKIIPGILG 357 (828)
Q Consensus 301 G~V~IwDl~s~~--~i~~f~a------H~~pIsaLaFSP----dG~lLATaS~------D-----Gt~I~IWdi~~~~~~ 357 (828)
+.|++++..+++ .+..+.. ....+..|+|+| +|.+.++-+. + .+.|.-|+.... .+
T Consensus 48 g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~-~~ 126 (454)
T 1cru_A 48 GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS-TD 126 (454)
T ss_dssp CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT-TT
T ss_pred CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC-CC
Confidence 467777765443 2334431 234577899999 5666666543 1 122333443221 00
Q ss_pred CCCccCCCCceeEEEE-EecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 358 TSSACDAGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 358 ~~~~~~~~~~~~~l~~-L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
.....+.+++ +..+ ..+....|+|.|||++.++.++.
T Consensus 127 ------~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 127 ------TLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp ------EEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEECCT
T ss_pred ------CcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEECCC
Confidence 0011233333 3222 22347899999999987776553
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=51.64 E-value=50 Score=35.31 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---cCCccccEEEEEEccC---CCEEE
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWIM 396 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~---RG~t~a~I~sIaFSpD---g~~LA 396 (828)
.-..|+|+|||+++++- .+|+ |+++| ..+ . ..+..+. .+. .....|+|+|| +.+|.
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g~-I~~~d-~~G------------~-~~~~~~~v~~~g~--~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPGR-LVLIS-PSG------------K-KLVASFDVANVGE--AGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTTE-EEEEC-SSC------------E-EEEEECCCCCSTT--CSEEEEEECTTTTTSCEEE
T ss_pred CCeEEEEcCCCeEEEEe-CCCE-EEEEe-CCC------------c-eEeeccceeecCC--CceeeEEeCCCCCcCCEEE
Confidence 45789999999977764 4576 67776 222 1 2222221 111 23789999998 55544
Q ss_pred EEe
Q 003336 397 ISS 399 (828)
Q Consensus 397 s~S 399 (828)
++.
T Consensus 92 v~~ 94 (354)
T 3a9g_A 92 LYA 94 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 307
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=48.69 E-value=3.8e+02 Score=31.22 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..|.+|..+++|.+.++.. +| .|..||..+. . ...+....|.....|.+|+..++|++.++ +.+
T Consensus 539 ~~i~~i~~d~~g~lWi~T~-~G-lv~~~d~~~~------------~-~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~ 602 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATG-EG-LVCFPSARNF------------D-YQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNT 602 (781)
T ss_dssp SCEEEEEECTTSCEEEEET-TE-EEEESCTTTC------------C-CEEECGGGTCSCCCCCEEEECSSSCEEEE-CSS
T ss_pred CeeEEEEECCCCCEEEEEC-CC-ceEEECCCCC------------c-EEEccccCCCCCceEEEEEECCCCCEEEE-cCC
Confidence 4689999999999877655 55 2367776554 1 22344344554455889999999986654 455
Q ss_pred CcEEEEecC
Q 003336 402 GTSHLFAIN 410 (828)
Q Consensus 402 GTVhIwdl~ 410 (828)
| +..|+..
T Consensus 603 G-l~~~~~~ 610 (781)
T 3v9f_A 603 G-ISCYITS 610 (781)
T ss_dssp C-EEEEETT
T ss_pred c-eEEEECC
Confidence 5 5555544
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=45.78 E-value=75 Score=33.80 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=45.3
Q ss_pred CCCeEEEEECCCCc--EEEEec----cCCCCeEEEEEcCC----CCEEEEEecC---C---CEEEEEeCCCCCCCCCCcc
Q 003336 299 NVGMVIVRDIVSKN--VIAQFR----AHKSPISALCFDPS----GILLVTASVQ---G---HNINIFKIIPGILGTSSAC 362 (828)
Q Consensus 299 ~dG~V~IwDl~s~~--~i~~f~----aH~~pIsaLaFSPd----G~lLATaS~D---G---t~I~IWdi~~~~~~~~~~~ 362 (828)
..|.|+++|..... .+..+. ........|+|+|+ |.+.++-+.. | +.|..|++... .+.
T Consensus 37 ~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~-~~~---- 111 (353)
T 2g8s_A 37 RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDD-LSK---- 111 (353)
T ss_dssp TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTT-SSB----
T ss_pred CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCC-CCC----
Confidence 35889888854221 122121 12235688999995 6666664431 1 22444554432 000
Q ss_pred CCCCceeEEEE-EecC-CccccEEEEEEccCCCEEEEEeC
Q 003336 363 DAGTSYVHLYR-LQRG-LTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 363 ~~~~~~~~l~~-L~RG-~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
....+.++. +..+ ...+.-..|+|.|||.+.++.++
T Consensus 112 --~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 112 --VTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp --EEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred --CCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 001122222 1110 01122467999999965555444
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=43.15 E-value=47 Score=39.19 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEecC-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003336 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (828)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG-~lLATaS~D-Gt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~R 376 (828)
..+.|.++|+........+.........|+++|++ .+++|-... ++ |.++++... ....+ +..
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~l--~~~ 537 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSL--VTE 537 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSC------------CCCEE--SCS
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCC------------CeeEE--EeC
Confidence 45788999987655444443333345778999964 445443222 44 555554321 01111 111
Q ss_pred CCccccEEEEEEccCCCEE-EEEeCCCcEEEEecCC
Q 003336 377 GLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINP 411 (828)
Q Consensus 377 G~t~a~I~sIaFSpDg~~L-As~S~DGTVhIwdl~~ 411 (828)
+. ..-..|+|+|++.+| .+-+..++|.++++..
T Consensus 538 ~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 538 NI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SC--SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CC--CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 11 124679999986554 4445567888888863
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=42.12 E-value=73 Score=34.56 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=46.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
|.|.-+|-. +. ..+...-.--+.|+|||||+.|..+......|..|++... +. . ....++.+ .
T Consensus 203 g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~------l-~~~~~~~~-----~ 265 (355)
T 3sre_A 203 SFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WT------L-TPLRVLSF-----D 265 (355)
T ss_dssp EEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SC------E-EEEEEEEC-----S
T ss_pred cEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC--Cc------E-ecCEEEeC-----C
Confidence 556666653 22 2222222345789999999988888776666899998642 11 0 01122222 1
Q ss_pred ccEEEEEEcc-CCCEEEEE
Q 003336 381 AVIQDISFSD-DSNWIMIS 398 (828)
Q Consensus 381 a~I~sIaFSp-Dg~~LAs~ 398 (828)
...-.+++.+ +|++.+++
T Consensus 266 g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SEEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEeCCCCcEEEEe
Confidence 2356788888 47766554
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=40.07 E-value=1.1e+02 Score=34.75 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=40.8
Q ss_pred CeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cCC-ccccEEEEEE-------ccCC
Q 003336 323 PISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGL-TNAVIQDISF-------SDDS 392 (828)
Q Consensus 323 pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~-RG~-t~a~I~sIaF-------SpDg 392 (828)
.-..|+|+| ++..|..+...++.|+++|+..+ .+..+- .+. .......|+| ++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G 204 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEA 204 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------------EEEEEEccCccccCCCcEEEEeecccccCCCC
Confidence 457899999 34444444444455888888764 223332 221 1123789999 9999
Q ss_pred CEEEEEeCCC
Q 003336 393 NWIMISSSRG 402 (828)
Q Consensus 393 ~~LAs~S~DG 402 (828)
++|.++...+
T Consensus 205 ~~lyvad~~~ 214 (496)
T 3kya_A 205 EYMIVAIDYD 214 (496)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9777776654
No 312
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=38.92 E-value=2.2e+02 Score=29.42 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=44.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEE
Q 003336 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (828)
Q Consensus 319 aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~ 398 (828)
.+...+..++|+|++++++.+. +|.+++-+|-. + ..... +..+. ...+.+++++++++.++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g-G------------~tW~~--~~~~~-~~~~~~~~~~~~g~~~~-~ 221 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG-Q------------TAWEP--HNRTT-SRRLHNMGFTPDGRLWM-I 221 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT-C------------SSCEE--EECCS-SSCEEEEEECTTSCEEE-E
T ss_pred CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC-C------------CceeE--CCCCC-CCccceeEECCCCCEEE-E
Confidence 3445788999999999887764 56645444421 1 01221 12222 23589999999998765 4
Q ss_pred eCCCcEEEEe
Q 003336 399 SSRGTSHLFA 408 (828)
Q Consensus 399 S~DGTVhIwd 408 (828)
+.+|.+.+..
T Consensus 222 ~~~G~~~~s~ 231 (327)
T 2xbg_A 222 VNGGKIAFSD 231 (327)
T ss_dssp ETTTEEEEEE
T ss_pred eCCceEEEec
Confidence 5678766653
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=38.06 E-value=5.2e+02 Score=29.79 Aligned_cols=180 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCcCCCEEEEEECCCCcEEEEEeCCC--CEEEEEEc---CCEE
Q 003336 75 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS--PIYSVRCS---SRVV 149 (828)
Q Consensus 75 PLLavv~~~~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S---~riL 149 (828)
|.|.+... ..|+..|+.+.+....+.+.. .+.+|+|. +++.
T Consensus 7 ~~Ll~s~~----------------------------------~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly 52 (628)
T 4a0p_A 7 AFLLFSRR----------------------------------ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIY 52 (628)
T ss_dssp CEEEEEET----------------------------------TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEE
T ss_pred cEEEEEeC----------------------------------CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEE
Q ss_pred EE-EeCCEEEEEECCCCceEEEEEcCCCccCCCCCCCCCcccceeeecc--ceEEEeCCCceecCCCccCCccccccccc
Q 003336 150 AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSF 226 (828)
Q Consensus 150 AV-s~~~~I~IwDl~t~~~l~tL~t~p~~~~~p~~~~~~~~~~piAlg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~ 226 (828)
.+ ...++|+.+++........+...-. ....+|+.. +.|-++.
T Consensus 53 wtD~~~~~I~r~~~~g~~~~~v~~~g~~------------~P~GlAvD~~~~~LY~tD---------------------- 98 (628)
T 4a0p_A 53 WTDISLKTISRAFMNGSALEHVVEFGLD------------YPEGMAVDWLGKNLYWAD---------------------- 98 (628)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCS------------CCCEEEEETTTTEEEEEE----------------------
T ss_pred EEECCCCeEEEEECCCCCcEEEEeCCCC------------CcceEEEEeCCCEEEEEE----------------------
Q ss_pred ccccCCCcceeeeecccccceeceeEeccCccceeeccccccccCCCCCCcccccCCCCCCCccCCcccccCCCCeEEEE
Q 003336 227 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR 306 (828)
Q Consensus 227 s~~~s~g~~Va~~A~~ssk~lasGl~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~k~~g~~~g~~~s~~~dG~V~Iw 306 (828)
...+.|.+.
T Consensus 99 -----------------------------------------------------------------------~~~~~I~v~ 107 (628)
T 4a0p_A 99 -----------------------------------------------------------------------TGTNRIEVS 107 (628)
T ss_dssp -----------------------------------------------------------------------TTTTEEEEE
T ss_pred -----------------------------------------------------------------------CCCCEEEEE
Q ss_pred ECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEE
Q 003336 307 DIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 385 (828)
Q Consensus 307 Dl~s~~~i~~f~aH~~pIsaLaFSP-dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~s 385 (828)
|+........+...-..-..|+++| .|.++.|--.+...|..+++... ....+.. ....-..
T Consensus 108 ~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~------------~~~~l~~-----~~~~P~G 170 (628)
T 4a0p_A 108 KLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS------------ERTTLVP-----NVGRANG 170 (628)
T ss_dssp ETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------SCEEEEC-----SCSSEEE
T ss_pred ecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC------------ceEEEEC-----CCCCcce
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEecC
Q 003336 386 ISFSDD-SNWIMISSSRGTSHLFAIN 410 (828)
Q Consensus 386 IaFSpD-g~~LAs~S~DGTVhIwdl~ 410 (828)
|+++++ ++...+-+..++|..+++.
T Consensus 171 lalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEccccCEEEEEECCCCEEEEEcCC
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=36.68 E-value=70 Score=37.72 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=49.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCcc
Q 003336 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (828)
Q Consensus 301 G~V~IwDl~s~~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~ 380 (828)
+.|.++++........+...-..-..|+|+|++..|..+......|.++++... ..+.+.... +. .
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~------------~~~~~~~~~-~~-~ 584 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILEDE-KR-L 584 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS------------CCEEECCCS-SS-C
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC------------ceEEEEecC-Cc-C
Confidence 567776665332211222212334679999986666666555555888887532 112221110 11 1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003336 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (828)
Q Consensus 381 a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~ 412 (828)
.....|++..+ .++.+....++|..++..++
T Consensus 585 ~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 585 AHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 11345666554 34445556678888876543
No 315
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=36.48 E-value=3.8e+02 Score=27.77 Aligned_cols=79 Identities=11% Similarity=-0.074 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.-..|+|+|++..|.-+......|..+|+... ..+.+. .+.. ..-..|++..+ ..+.+-...+
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~---~~~~-~~P~glav~~~-~lywtd~~~~ 229 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------NRQAVV---KGSL-PHPFALTLFED-ILYWTDWSTH 229 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEE---CSCC-SCEEEEEEETT-EEEEEETTTT
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCC------------ceEEEe---cCCC-CCceEEEEeCC-EEEEEecCCC
Confidence 34789999987777777766666888887532 112222 2111 23567887543 4444555667
Q ss_pred cEEEEecCCCCCceee
Q 003336 403 TSHLFAINPLGGSVNF 418 (828)
Q Consensus 403 TVhIwdl~~~gg~~~~ 418 (828)
.|..++..++.....+
T Consensus 230 ~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 230 SILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEECCCCCceEEE
Confidence 8888887655444444
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.79 E-value=77 Score=38.90 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
.|.+++..+|..++.+-|.|+++|||++.+.....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 478899999999999999999999999998655443
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=35.34 E-value=2.2e+02 Score=30.60 Aligned_cols=101 Identities=8% Similarity=0.068 Sum_probs=51.7
Q ss_pred cccCCCCeEEEEECCCCcE--EEEec----cCCCCeEEEEEcCC----CCEEEEEec-CCCEEEEEeCCCCCCCCCCccC
Q 003336 295 PDADNVGMVIVRDIVSKNV--IAQFR----AHKSPISALCFDPS----GILLVTASV-QGHNINIFKIIPGILGTSSACD 363 (828)
Q Consensus 295 ~s~~~dG~V~IwDl~s~~~--i~~f~----aH~~pIsaLaFSPd----G~lLATaS~-DGt~I~IWdi~~~~~~~~~~~~ 363 (828)
++....|.|++++..+++. +..+. ........|+|+|| |.+.++-+. ....|--|........ ..
T Consensus 47 Vter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~----~~ 122 (347)
T 3das_A 47 VSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPS----GE 122 (347)
T ss_dssp EEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCT----TC
T ss_pred EEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcc----cc
Confidence 3333478999998765543 33332 22346788999995 776665332 2222333333321000 00
Q ss_pred CCCceeEEEE-EecCCccccEEEEEEccCCCEEEEEeC
Q 003336 364 AGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 364 ~~~~~~~l~~-L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
.....+.+++ +..+ ..+.-..|+|.|||.+.++.++
T Consensus 123 ~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 123 QLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp CBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred cCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 0112233333 4322 2233567999999987777554
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=34.44 E-value=3.6e+02 Score=26.84 Aligned_cols=50 Identities=4% Similarity=0.045 Sum_probs=29.2
Q ss_pred CEEEEEECCCCc---EEEEEeCC---CCEEEEEEcCCEEEEEe------CCEEEEEECCCCc
Q 003336 117 TVVHFYSLRSQS---YVHMLKFR---SPIYSVRCSSRVVAICQ------AAQVHCFDAATLE 166 (828)
Q Consensus 117 ~tVrlWDL~Tg~---~V~tL~f~---s~V~sV~~S~riLAVs~------~~~I~IwDl~t~~ 166 (828)
+.+.+||+.+++ ....-..+ ....++.+++++++++. ...+.+||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 568999999887 43332222 22233444566666532 2368888877664
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=34.09 E-value=43 Score=34.57 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=40.8
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
.+..|+|+|+|.|.|. .+|. ||.+.+....+. .+.+...+|-. .|-+ ....+.|.|+|.+.|+ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~---Ly~~~~~t~~~~---~W~~s~t~IG~--~Gw~--~F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK---IYKGTPPTHDND---NWMGRAKKIGN--GGWN--QFQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE---EEEESCCCSTTC---CHHHHCEEEEC--SCGG--GCSEEEECTTSCEEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCe---EEEECCCCCCcc---cccccccEecc--cccc--cceEEEECCCCCEEEe--CCC
Confidence 4568999999998888 5564 566655311110 00011122111 0111 1367899999999998 458
Q ss_pred cEEEEe
Q 003336 403 TSHLFA 408 (828)
Q Consensus 403 TVhIwd 408 (828)
.|.-++
T Consensus 108 ~iyr~~ 113 (236)
T 1tl2_A 108 KLYKAS 113 (236)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 665443
No 320
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=33.69 E-value=4e+02 Score=29.12 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=38.0
Q ss_pred CeEEEEECCCC--cEEEEeccC------CCCeEEEEEc---CC----CCEEEEEecCCCEEEEEeCCCC
Q 003336 301 GMVIVRDIVSK--NVIAQFRAH------KSPISALCFD---PS----GILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 301 G~V~IwDl~s~--~~i~~f~aH------~~pIsaLaFS---Pd----G~lLATaS~DGt~I~IWdi~~~ 354 (828)
-.|.+||+.+. +.++.+.-. .+-+..|+++ |+ +.+...+...+.-|-|+|+.++
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~ 191 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ 191 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC
Confidence 47999999999 888876521 3458899999 32 3444444444445889999886
No 321
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=32.83 E-value=3.4e+02 Score=30.23 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=54.7
Q ss_pred CCCCeEEEEECCCC---cEEEEec---c------CCCCeEEEEEcCC----CCEEEEEecCC-----------CEEEEEe
Q 003336 298 DNVGMVIVRDIVSK---NVIAQFR---A------HKSPISALCFDPS----GILLVTASVQG-----------HNINIFK 350 (828)
Q Consensus 298 ~~dG~V~IwDl~s~---~~i~~f~---a------H~~pIsaLaFSPd----G~lLATaS~DG-----------t~I~IWd 350 (828)
...|.|+++|.... .++..+. + .......|+|+|+ +.+.++-+.+. +.|.-|.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688999875432 2333332 1 1346788999997 77766644321 1233355
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCC
Q 003336 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (828)
Q Consensus 351 i~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DG 402 (828)
+..+.. ...+ ..+.+.|+++......+....|+|.|||++.++.++.+
T Consensus 113 ~~~~~~---~~~d-~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRKNP---HQVD-LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTTCT---TSBC-GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCCCC---CccC-CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 443200 0000 01234455554322334578999999998877776654
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.45 E-value=1.2e+02 Score=37.23 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~ 354 (828)
.|.+++..++..+|.|-+.|++ +|||++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCC
Confidence 4677888889999999999977 899999887
No 323
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.68 E-value=55 Score=40.91 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003336 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (828)
Q Consensus 382 ~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~~gg~~~ 417 (828)
.|.+++..+|.++|.+-+.|+++|||++.++.+..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 367788889999999999999999999998755444
No 324
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=29.48 E-value=5.2e+02 Score=29.70 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCC
Q 003336 300 VGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (828)
Q Consensus 300 dG~V~IwDl~s~~-~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~ 378 (828)
...|++.|+.... ....+........+|+|++.+..|.-+......|..+++... . .....+..+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~------------~-~~~~v~~~~~ 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT------------E-SVQNVVVSGL 83 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSSC
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC------------C-ceEEEEeCCC
Confidence 4578888887643 222222333457789999977666666665555777776532 0 0111222232
Q ss_pred ccccEEEEEEccCCC-EEEEEeCCCcEEEEecCC
Q 003336 379 TNAVIQDISFSDDSN-WIMISSSRGTSHLFAINP 411 (828)
Q Consensus 379 t~a~I~sIaFSpDg~-~LAs~S~DGTVhIwdl~~ 411 (828)
.....|++.+.++ +..+-+..+.|.+.++.-
T Consensus 84 --~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 84 --LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 2478999999555 555556678899988863
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=29.03 E-value=89 Score=32.20 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=38.8
Q ss_pred EEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCCCcE
Q 003336 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (828)
Q Consensus 325 saLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTV 404 (828)
.++.|+|+|.+.|+ .||+ |+.+.+...+. ..+.....++- ++|- ..+..|.|.|||.+.|+. |+.+
T Consensus 91 ~a~~fD~~G~LYav--~dG~---iyr~~pP~~~~---~~Wl~~a~~vg--~~gw--~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDK---LYKASPPQSDT---DNWIARATEVG--SGGW--SGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp SEEEECTTSCEEEE--ETTE---EEEESCCCSTT---CCHHHHSEEEE--CSSG--GGEEEEEECTTSCEEEEE--TTEE
T ss_pred eEEEECCCCCEEEe--CCCE---EEEeCCCcCCC---CceeccccEec--cCCC--CceEEEEECCCceEEEEe--CCcE
Confidence 67899999999998 4586 33333321111 11111112211 1121 248899999999999888 6663
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=27.74 E-value=2.2e+02 Score=30.15 Aligned_cols=83 Identities=12% Similarity=0.249 Sum_probs=45.9
Q ss_pred EEEEeccCCCCeEEEEEcC-------CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEE
Q 003336 313 VIAQFRAHKSPISALCFDP-------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 385 (828)
Q Consensus 313 ~i~~f~aH~~pIsaLaFSP-------dG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~s 385 (828)
++..+..|. ....++|.. +|++|++.- .+..|...++..+ .......+-.+. ...+.+
T Consensus 263 P~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~-~~~~v~~~~~~~~------------~~~~~~~~~~~~-~~rp~~ 327 (353)
T 2g8s_A 263 PVFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGAL-KDKDVIVMSVNGD------------KVTEDGRILTDR-GQRIRD 327 (353)
T ss_dssp CSEEESSCC-CEEEEEEECCSSSGGGTTEEEEEET-TTTEEEEEEEETT------------EEEEEEEESGGG-CCCEEE
T ss_pred CeEEeCCCc-CcceeEEECCccCcccCCcEEEEEc-cCCEEEEEEeCCC------------eEeeeEEcccCC-CCceeE
Confidence 444555554 567788875 577666554 4443555555432 111222232111 235899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 386 ISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 386 IaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
|++.|||.+.++. ++.+=+||.|.+
T Consensus 328 v~~~pdG~lyv~t-d~~~g~I~ri~~ 352 (353)
T 2g8s_A 328 VRTGPDGYLYVLT-DESSGELLKVSP 352 (353)
T ss_dssp EEECTTSCEEEEE-CSTTEEEEEEEC
T ss_pred EEECCCCcEEEEE-eCCCCEEEEEeC
Confidence 9999999865543 334456777753
No 327
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=25.50 E-value=1.9e+02 Score=29.91 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeC
Q 003336 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (828)
Q Consensus 323 pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~ 400 (828)
.+..|.+.+++++++.+. +|. ||....+ | .... .+..+. ...+.+++|.+++++++++..
T Consensus 123 ~~~~i~~~~~~~~~~~~~-~g~---v~~S~Dg--G---------~tW~--~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITN-VGA---IYRTKDS--G---------KNWQ--ALVQEA-IGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp CEEEEEEEETTEEEEEET-TCC---EEEESST--T---------SSEE--EEECSC-CCCEEEEEECTTSCEEEEETT
T ss_pred CeEEEEEECCCCEEEEeC-Ccc---EEEEcCC--C---------CCCE--EeecCC-CcceEEEEEcCCCcEEEEECC
Confidence 356677777888777654 565 3433321 0 1122 122232 235899999999998877643
No 328
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=24.41 E-value=7.2e+02 Score=27.11 Aligned_cols=105 Identities=13% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCcEEEEEccCCeEEEEecCCCceeEeeeee--cCCEEEEEEecCCCCcccccCccccCCCEEEEEeCCCCccCccccC
Q 003336 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY--DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (828)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~h--dG~V~~v~~lP~p~~~~~~~d~F~~~rPLLavv~~~~~~g~~~~~D 93 (828)
+..+||++=....+||+|++.. +-+..| ..+|-+=+++-. ..|++|++
T Consensus 76 P~~~ViALrag~~LQiFnletK----~klks~~~~e~VvfWkWis~---------------~~L~lVT~----------- 125 (365)
T 2xzh_A 76 PASKVIALKAGKTLQIFNIEMK----SKMKAHTMTDDVTFWKWISL---------------NTVALVTD----------- 125 (365)
T ss_dssp SSSSEEEEEETTEEEEEETTTT----EEEEEEECSSCEEEEEECSS---------------SEEEEEES-----------
T ss_pred CCccEEEEecCCeEEEechHHh----hhhcceecCCccEEEEecCC---------------CeEEEEcC-----------
Confidence 4588999988888999999873 333433 467888888731 27888885
Q ss_pred CcccccCCCCCCCCCCCCCCcCCCEEEEEECCC-CcEEEEEeC-----CCCEEEEEEc--CCEEEE-Ee-------CCEE
Q 003336 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLKF-----RSPIYSVRCS--SRVVAI-CQ-------AAQV 157 (828)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-g~~V~tL~f-----~s~V~sV~~S--~riLAV-s~-------~~~I 157 (828)
+.|.-|++.. .+.++.+.- ...|.+-+++ .+.+++ +. .+.+
T Consensus 126 -----------------------taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 126 -----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp -----------------------SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred -----------------------CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeE
Confidence 4588898864 355666643 4578887776 465554 21 2467
Q ss_pred EEEECCCCceEEEEEcC
Q 003336 158 HCFDAATLEIEYAILTN 174 (828)
Q Consensus 158 ~IwDl~t~~~l~tL~t~ 174 (828)
.+|..+.. .-+.+++|
T Consensus 183 QLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 183 QLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp EEEETTTT-EEEEECCS
T ss_pred EEEeeccc-ccceeeee
Confidence 78887644 34555555
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=23.90 E-value=1.5e+02 Score=34.75 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=62.4
Q ss_pred eEEEEECCC----C-cEEEEeccCCCCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCC---CCCCccCCCCceeEEEE
Q 003336 302 MVIVRDIVS----K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL---GTSSACDAGTSYVHLYR 373 (828)
Q Consensus 302 ~V~IwDl~s----~-~~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~---~~~~~~~~~~~~~~l~~ 373 (828)
.|.|.|.+. + ..+..+..-++|- .+.++|||++++.++.-...+-|+|+..-.. +.. .+.. ......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPH-Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~--~~~~--~~~~ae 373 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPH-GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL--ADPR--DVIVGE 373 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCC-CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC--SCGG--GGEEEC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCc-ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc--cCcc--cceEee
Confidence 467788765 2 3444454444443 4689999999999888766689999874200 000 0000 011122
Q ss_pred EecCCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003336 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (828)
Q Consensus 374 L~RG~t~a~I~sIaFSpDg~~LAs~S~DGTVhIwdl~~ 411 (828)
..-|.- -...+|.++|.-..+--.|..|-.|++..
T Consensus 374 ~e~GlG---PlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 374 PELGLG---PLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CBCCSC---EEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ccCCCc---ccEEEECCCCceEeeeeecceEEEEeccH
Confidence 323432 46789999994444555899999999965
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=23.18 E-value=5.6e+02 Score=25.38 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=28.9
Q ss_pred CeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEecCCC----EEEEEeCCCC
Q 003336 301 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTASVQGH----NINIFKIIPG 354 (828)
Q Consensus 301 G~V~IwDl~s~~--~i~~f~aH~~pIsaLaFSPdG~lLATaS~DGt----~I~IWdi~~~ 354 (828)
..+.+||..+.+ .+..+......-.++.+ ++++++.|+.++. .+.+||+.+.
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred ceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 357778877654 23333322222233333 7888888776532 3678887664
No 331
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=22.69 E-value=9e+02 Score=27.66 Aligned_cols=76 Identities=12% Similarity=-0.081 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecCCccccEEEEEEccCCCEEEEEeCC
Q 003336 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (828)
Q Consensus 322 ~pIsaLaFSPdG~lLATaS~DGt~I~IWdi~~~~~~~~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs~S~D 401 (828)
..-..|++++++..|.-+......|..+|+... ..+ .+..+... .-..|++..| ....+-...
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-------------~~~--~~~~~~~~-~P~gi~~~~~-~ly~td~~~ 233 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-------------NRQ--AVVKGSLP-HPFALTLFED-ILYWTDWST 233 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-------------EEC------------CCCEEESSS-EEEEECTTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-------------ccE--EEEeCCCC-CceEEEEeCC-EEEEecCCC
Confidence 346789999987777777666555777776432 111 11111111 1346777766 444444456
Q ss_pred CcEEEEecCCCCC
Q 003336 402 GTSHLFAINPLGG 414 (828)
Q Consensus 402 GTVhIwdl~~~gg 414 (828)
++|...+..++..
T Consensus 234 ~~V~~~d~~tg~~ 246 (619)
T 3s94_A 234 HSILACNKYTGEG 246 (619)
T ss_dssp CSEEEEESSSCCC
T ss_pred CEEEEEECCCCcc
Confidence 7777777655433
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=22.53 E-value=5.8e+02 Score=25.36 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=30.2
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEcCCEEEEEe-C------CEEEEEECCCCc
Q 003336 117 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCSSRVVAICQ-A------AQVHCFDAATLE 166 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s---~V~sV~~S~riLAVs~-~------~~I~IwDl~t~~ 166 (828)
..+..||+.+++....-..+. ...++.+.+++++++. + ..+++||..+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 679999999987654433332 2233444566666532 2 357788877664
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=21.25 E-value=6.3e+02 Score=25.28 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=27.9
Q ss_pred CEEEEEECCCCcEEEEEeCC---CCEEEEEEcCCEEEEEe------CCEEEEEECCCCc
Q 003336 117 TVVHFYSLRSQSYVHMLKFR---SPIYSVRCSSRVVAICQ------AAQVHCFDAATLE 166 (828)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~---s~V~sV~~S~riLAVs~------~~~I~IwDl~t~~ 166 (828)
+.+.+||+.+++....-..+ .....+.+++++++++. ...+.+||+.+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 56889999988754322222 22233444566665531 2357777776654
Done!