BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003337
(828 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 234/460 (50%), Gaps = 47/460 (10%)
Query: 348 IYGVAGTIRLLAGKYVLVITSRKEAGTFLGFPVFRVTSMKFLHCNEALKFSNYQEKKDEV 407
I + G I+L +Y ++ + +E G F G +RV H + KF N + +E
Sbjct: 56 IASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQ----HSIVSTKF-NSRIDSEEA 110
Query: 408 YFMNLLKVVEATPGLYYSYETDITLNLQRRCKLAEGWMSKPIWKQADPRFVWN------- 460
++ LL++ Y+SY D+T +LQR K+ WK AD RF WN
Sbjct: 111 EYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPA----ASWKTADERFFWNHYLTEDL 166
Query: 461 RNXXXX---------------XXXXXXXXNDSPAVITLLSRRCNRRLGTRMWRRGANLEG 505
RN N +P V+ L++RR R GTR +RRG + +G
Sbjct: 167 RNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDG 226
Query: 506 DTANFIETEQLLETEGFKS------SLLQVRGSIPLLWEQIVDLSYKPRLKIINHDQTPK 559
+ NF ETEQ+L E +S S LQ RGS+P+ W +I +L YKP L + + +
Sbjct: 227 NVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVL--GENSLD 284
Query: 560 VVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAAEMQKL--PNVRYVSFDFHHVCGT 617
++HF + YG+ V+L ++ G E + Y + + L P + YV FDFHH C
Sbjct: 285 ATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHHECRK 344
Query: 618 SNFDKLQVLYDQIQQ-EFDNQGYL--LIDTEGNILE---EQKGVIRSNCIDCLDRTNVTQ 671
+ ++++L D +++ N+ + +ID+ GN +E EQ V+R+NC+DCLDRTNV Q
Sbjct: 345 MQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRTNVVQ 404
Query: 672 SYLAQKSLSLQLQRIGILSCTKCISMFSEECGKFRTLWAEQGDEISIEYAGTYALKGDLV 731
S LAQ L + + +++ + ++ LWA+ D +S+ Y+GT ALK D
Sbjct: 405 SVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTDFT 464
Query: 732 RYGKQTISGLIRDGMSSLSRYYLNNFQDGVRQDAMDLISG 771
R GK+T G D ++S SRYY NN+ DG RQD+ DL G
Sbjct: 465 RTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Query: 195 LTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNN 254
LT L+ +DK+V +KVV F+KG++ P CGFSQ V+ IL+S +ESV++L+ E
Sbjct: 3 LTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENEL-- 60
Query: 255 GLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFKLHDQLE 301
LR+ LK+YS+WPTFPQ++++GE GGCDI Y+ G +L +Q+E
Sbjct: 61 -LRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSG--ELQEQVE 104
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 195 LTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNN 254
LT L++ ++KLV KVV F+KG+R PMCGFS V+ IL++ V +E V++L+ E
Sbjct: 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM-- 60
Query: 255 GLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFKLHDQLE 301
LR+ LK+YSNWPTFPQ+++ GE GGCDI ++ G +L +++E
Sbjct: 61 -LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTG--ELQEEVE 104
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 4/93 (4%)
Query: 201 ELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGV-DYESVDVLDEEYNNGLRET 259
E +D LVK++KVV F+KG+ P CGFS V+ IL GV DY + +VLD+ LR+
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPE---LRQG 67
Query: 260 LKKYSNWPTFPQIFVNGELVGGCDILSSMYEKG 292
+K YSNWPT PQ+++NGE VGGCDIL M++ G
Sbjct: 68 IKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNG 100
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRE 258
LEE + L + V+ F+KG++ CGFS++++ IL S GV+YE+ D+L++E +R+
Sbjct: 6 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE---VRQ 62
Query: 259 TLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
LK YSNWPT+PQ++V GELVGG DI+ + E G
Sbjct: 63 GLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 98
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 201 ELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETL 260
E I + + EN ++ ++KGS P CGFS + + L + G + VD+L N +R L
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ---NPDIRAEL 82
Query: 261 KKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFK 295
KY+NWPTFPQ++V+GELVGGCDI+ MY++G +
Sbjct: 83 PKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQ 117
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 201 ELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETL 260
E I + + EN ++ ++KGS P CGFS + + L + G + VD+L N +R L
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ---NPDIRAEL 62
Query: 261 KKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFK 295
KY+NWPTFPQ++V+GELVGGCDI+ MY++G +
Sbjct: 63 PKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQ 97
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 89.7 bits (221), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 8/110 (7%)
Query: 195 LTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVD---YESVDVLDEE 251
L+ + + I+ ++ VV F+KG+ P CGFS+ IG+L +QGVD + + +VL++
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 252 YNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFKLHDQLE 301
LRE +K++S WPT PQ++VN E +GGCD+++SM G +L D LE
Sbjct: 61 E---LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSG--ELADLLE 105
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Query: 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSN 265
L + V+ F+KG++ CGFS++++ IL S GV+YE+ D+L++E +R+ LK +SN
Sbjct: 11 LTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE---VRQGLKTFSN 67
Query: 266 WPTFPQIFVNGELVGGCDILSSMYEKGRF 294
WPT+PQ++V G+LVGG DI+ + + G
Sbjct: 68 WPTYPQLYVRGDLVGGLDIVKELKDNGEL 96
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKK 262
+ KL + F+KG+ P CGFS++++ IL + + S D+ +E +R+ LK
Sbjct: 9 LKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDE---EVRQGLKA 65
Query: 263 YSNWPTFPQIFVNGELVGGCDILSSM 288
YS+WPT+PQ++V+GEL+GG DI+ +
Sbjct: 66 YSSWPTYPQLYVSGELIGGLDIIKEL 91
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRET 259
+ ++ ++ KVV FIK + P C +Q+++ L + E VD+ N +++
Sbjct: 2 QAFVNSKIQPGKVVVFIKPT--CPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDY 59
Query: 260 LKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
L++ + T P++F+ E +GGC L SM+++G
Sbjct: 60 LQQLTGARTVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRET 259
+E ++ ++ KVV FIK + P C +Q+++ L + E VD+ + N +++
Sbjct: 3 QEFVNCKIQPGKVVVFIK--PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY 60
Query: 260 LKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
L++ + T P++F+ + +GGC L S+ + G
Sbjct: 61 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 196 TVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNG 255
T P+ + I + + +N VV F K S C + + V+Y+ V++ EY N
Sbjct: 14 TAPVNQ-IQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 67
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
++ L K + T P+IFVNG +GG ++++G+
Sbjct: 68 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 106
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 196 TVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNG 255
T P+ + I + + +N VV F K S C + + V+Y+ V++ EY N
Sbjct: 36 TAPVNQ-IQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 89
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
++ L K + T P+IFVNG +GG ++++G+
Sbjct: 90 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 128
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 221 SAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWP-TFPQIFVNGELV 279
+ P C + ++ +L+ +GV Y +D + LR+ + + +N TFPQIF+ V
Sbjct: 12 TRPNCPYCKRARDLLDKKGVKYTDIDA-----STSLRQEMVQRANGRNTFPQIFIGDYHV 66
Query: 280 GGCDILSSMYEKGRF 294
GGCD L ++ KG+
Sbjct: 67 GGCDDLYALENKGKL 81
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNG--L 256
LE+ + K V EN VV + S C +S +V + + VD V+ LDE G +
Sbjct: 7 LEDAVKKTVAENPVVVY-----SKTWCSYSSEVKSLFKRLNVDPLVVE-LDELGAQGPQI 60
Query: 257 RETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFK 295
++ L++ + T P +F+ G+ +GGC +Y KG +
Sbjct: 61 QKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELE 99
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 196 TVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNG 255
++P+ + I + + +N VV F K S C + + V+Y+ V++ EY N
Sbjct: 22 SMPVNQ-IQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 75
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
++ L K + T P+IFVNG +GG ++++G+
Sbjct: 76 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILES----QGVDYESVDVLDEEYNNG 255
+E ++ ++ KVV FIK P C +S++ IL QG+ E VD+ + N
Sbjct: 2 QEFVNSKIQPGKVVVFIK-----PTCPYSRRAQEILSQLPIKQGL-LEFVDITATNHTNE 55
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
+++ L++ + T P++F+ + +GG L S+ + G
Sbjct: 56 IQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGC 282
P C + + +L +G ++ +D LR +++ S TFPQIF+ VGGC
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDA---SATPELRAEMQERSGRNTFPQIFIGSVHVGGC 70
Query: 283 DILSSMYEKGRF 294
D L ++ ++G+
Sbjct: 71 DDLYALEDEGKL 82
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 225 CGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284
C +S + +L S+GV ++ + + + N RE + K S T PQIF++ + +GG D
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPI---DGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDD 67
Query: 285 LSSMYEKG 292
L ++ +G
Sbjct: 68 LYALDARG 75
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLR--ETLKKY 263
L++ ++VV F S C S +V + S GV+ +++ ++ ++G R E L +
Sbjct: 13 LIERSRVVIF-----SKSYCPHSTRVKELFSSLGVECNVLEL--DQVDDGARVQEVLSEI 65
Query: 264 SNWPTFPQIFVNGELVGGCDILSSMYEKG 292
+N T P IFVN VGGCD Y+ G
Sbjct: 66 TNQKTVPNIFVNKVHVGGCDQTFQAYQSG 94
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 203 IDKLVKENKVVAFIKGSRSAPM-------CGFSQKVIGILESQGVDYESVDVLDEEYNNG 255
+D +K+ K +A SAP+ CG+ +V +L G Y+ V++ + +
Sbjct: 6 LDAALKKAKELA-----SSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQ 60
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
L+ L ++ T P +F+ G+ +GGCD + +++
Sbjct: 61 LQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNEL 99
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 203 IDKLVKENKVVAFIKGSRSAPM-------CGFSQKVIGILESQGVDYESVDVLDEEYNNG 255
+D +K+ K +A SAP+ CG+ +V +L G Y+ V++ + +
Sbjct: 7 LDAALKKAKELA-----SSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQ 61
Query: 256 LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
L+ L ++ T P +F+ G+ +GGCD + +++
Sbjct: 62 LQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNEL 100
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 225 CGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284
C + + +L S+GV ++ + + + N RE + K S T PQIF++ + +GG D
Sbjct: 11 CPYCHRAKALLSSKGVSFQELPI---DGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDD 67
Query: 285 LSSMYEKG 292
L ++ +G
Sbjct: 68 LYALDARG 75
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNG--L 256
+EE I K V EN VV + S C + +V + + GV V+ LD+ G L
Sbjct: 8 MEESIRKTVTENTVVIY-----SKTWCSYCTEVKTLFKRLGVQPLVVE-LDQLGPQGPQL 61
Query: 257 RETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRFKL 296
++ L++ + T P +FV G+ +GGC + KG +L
Sbjct: 62 QKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLEL 101
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRET 259
EE + + + NKV F+K + P C + ++ + YE VD+ + + N LR+
Sbjct: 9 EEFVQQRLANNKVTIFVK--YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 260 LKKYSNWPTFPQIFVNGELVGG 281
++ + T P+IF +GG
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGG 88
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRET 259
EE + + + NKV F+K + P C + ++ + YE VD+ + + N LR+
Sbjct: 9 EEFVQQRLANNKVTIFVK--YTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 260 LKKYSNWPTFPQIFVNGELVGG 281
++ + T P+IF +GG
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGG 88
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 221 SAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVG 280
+ P C F K +L +G+ +E + +L ++ +++ S T PQ+F+ G+ +G
Sbjct: 176 TKPGCPFCAKAKQLLHDKGLSFEEI-ILG---HDATIVSVRAVSGRTTVPQVFIGGKHIG 231
Query: 281 GCDILSSMY 289
G D L +
Sbjct: 232 GSDDLEKYF 240
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 205 KLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS 264
K V V+ F K + C + +KV +L + + ++++ + +++ L +S
Sbjct: 13 KTVDSAAVILFSKTT-----CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS 67
Query: 265 NWPTFPQIFVNGELVG 280
T PQ+FV G+ +G
Sbjct: 68 KIETVPQMFVRGKFIG 83
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 205 KLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS 264
K V V+ F K + C + +KV +L + + ++++ + +++ L +S
Sbjct: 13 KTVDSAAVILFSKTT-----CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS 67
Query: 265 NWPTFPQIFVNGELVG 280
T PQ+FV G+ +G
Sbjct: 68 KIETVPQMFVRGKFIG 83
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 205 KLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS 264
K V V+ F K + C + +KV +L + + ++++ + +++ L +S
Sbjct: 13 KTVDSAAVILFSKTT-----CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS 67
Query: 265 NWPTFPQIFVNGELVG 280
T PQ+FV G+ +G
Sbjct: 68 KIETVPQMFVRGKFIG 83
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 25 QNAPSLSFYSHFRPPIQLPSISHNTYKYT-TATPRSL---VIVTAVKTLSDTELV-AVPL 79
A +S + +R P+ + + T+ + A P + +++ A+ L+D ++V AV L
Sbjct: 185 HTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL 244
Query: 80 TAEEFNSKFPSETGVYAVYDKNDELQFVGISRNIG 114
E N FPS ++ + +D L F+G IG
Sbjct: 245 DPEVQNELFPSLEQASSIANVDDALDFIGSRVAIG 279
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +MKF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 32 FRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWE 78
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +MKF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 33 FRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWE 79
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 25 QNAPSLSFYSHFRPPIQLPSISHNTYKYT-TATPRSL---VIVTAVKTLSDTELV-AVPL 79
A +S + +R P+ + + T+ + A P + +++ A+ L+D ++V AV L
Sbjct: 188 HTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL 247
Query: 80 TAEEFNSKFPSETGVYAVYDKNDELQFVGISRNIG 114
E N FPS ++ + +D L F+G IG
Sbjct: 248 DPEIQNELFPSLEQASSIANVDDALDFIGSRVAIG 282
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +KF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 53 FRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE 99
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 225 CGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284
C F + + +L+ +GV+++ +D + N + + + PQIF++ + +GGCD
Sbjct: 26 CPFCMRALALLKRKGVEFQEY-CIDGD-NEAREAMAARANGKRSLPQIFIDDQHIGGCDD 83
Query: 285 LSSMYEKGRF 294
+ ++ G+
Sbjct: 84 IYALDGAGKL 93
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +KF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 33 FRLVGLKFMQASEDLLKEHYVDLKDRPWFAGLVKYMHSGPVVAMVWE 79
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +KF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 33 FRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE 79
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +KF+ +E L +Y + KD +F L+K + + P + +E
Sbjct: 33 FRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE 79
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 250 EEYNNG--LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
+E +NG +++ L++ S T P +++NG+ +GG L ++ + G+
Sbjct: 74 DEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 120
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +MKFL +E +Y + KD +F L+K + + P + +E
Sbjct: 33 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWE 79
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +MKFL +E +Y + KD +F L+K + + P + +E
Sbjct: 32 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWE 78
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 381 FRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYE 427
FR+ +MKFL +E +Y + KD +F L+K + + P + +E
Sbjct: 32 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWE 78
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 225 CGFSQKVIGIL-ESQGVDYESVDVLD-EEYNNG--LRETLKKYSNWPTFPQIFVNGELVG 280
C +S+ + L + V VL+ +E +NG +++ L++ S T P +++NG+ +G
Sbjct: 30 CPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 89
Query: 281 GCDILSSMYEKGRF 294
G L ++ + G+
Sbjct: 90 GNSDLETLKKNGKL 103
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 250 EEYNNG--LRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294
+E +NG +++ L++ S T P +++NG+ +GG L ++ + G+
Sbjct: 54 DEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 100
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
Length = 345
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 87 KFPSETG---VYAVYDKNDELQFVGISRNIGASVFSHLKSVPELCCSVKVGVVDDPDRTA 143
KF ETG VY VYD N+ L+ ++ G V S L +K GV D++
Sbjct: 26 KFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSF--LAKQIKAGVYQKLDKSK 83
Query: 144 LTQAWKSWMEEHIQATGKIPPGNE 167
L WK+ ++ + PGNE
Sbjct: 84 LPN-WKNLNKDLMHTLEVSDPGNE 106
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
Length = 346
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 87 KFPSETG---VYAVYDKNDELQFVGISRNIGASVFSHLKSVPELCCSVKVGVVDDPDRTA 143
KF ETG VY VYD N+ L+ ++ G V S L +K GV D++
Sbjct: 26 KFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSF--LAKQIKAGVYQKLDKSK 83
Query: 144 LTQAWKSWMEEHIQATGKIPPGNE 167
L WK+ ++ + PGNE
Sbjct: 84 LPN-WKNLNKDLMHTLEVSDPGNE 106
>pdb|1YLP|A Chain A, Atomic Resolution Structure Of Ctx-M-27 Beta-Lactamase
Length = 263
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|1YLW|A Chain A, X-ray Structure Of Ctx-m-16 Beta-lactamase
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|1YLT|A Chain A, Atomic Resolution Structure Of Ctx-M-14 Beta-Lactamase
pdb|1YLZ|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
pdb|1YLZ|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|1YLJ|A Chain A, Atomic Resolution Structure Of Ctx-M-9 Beta-Lactamase
pdb|1YLY|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Ceftazidime-Like Boronic Acid
pdb|1YLY|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Ceftazidime-Like Boronic Acid
pdb|1YM1|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With A Boronic Acid Inhibitor (Sm2)
pdb|1YM1|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With A Boronic Acid Inhibitor (Sm2)
pdb|1YMS|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Nafcinin-Like Boronic Acid Inhibitor
pdb|1YMS|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Nafcinin-Like Boronic Acid Inhibitor
pdb|1YMX|A Chain A, X-ray Crystallographic Structure Of Ctx-m-9 Beta-lactamase
Covalently Linked To Cefoxitin
pdb|1YMX|B Chain B, X-ray Crystallographic Structure Of Ctx-m-9 Beta-lactamase
Covalently Linked To Cefoxitin
pdb|3G2Z|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
(Gz2)
pdb|3G2Z|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
(Gz2)
pdb|3G30|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 3
(G30)
pdb|3G31|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
(Gf1)
pdb|3G31|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
(Gf1)
pdb|3G32|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
(3g3)
pdb|3G32|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
(3g3)
pdb|3G34|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
(1ce)
pdb|3G34|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
(1ce)
pdb|3G35|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
(F13)
pdb|3G35|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
(F13)
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|3HUO|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Benzylpenicillin
pdb|3HUO|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Benzylpenicillin
pdb|3HVF|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Hydrolyzed Benzylpenicillin
pdb|3HVF|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Hydrolyzed Benzylpenicillin
pdb|3HLW|A Chain A, Ctx-M-9 S70g In Complex With Cefotaxime
pdb|3HLW|B Chain B, Ctx-M-9 S70g In Complex With Cefotaxime
pdb|3HRE|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
pdb|3HRE|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
pdb|3Q07|A Chain A, Ctx-M-9 S70g In Complex With Piperacillin
pdb|3Q07|B Chain B, Ctx-M-9 S70g In Complex With Piperacillin
pdb|3Q1F|A Chain A, Ctx-M-9 S70g In Complex With Hydrolyzed Piperacillin
pdb|3Q1F|B Chain B, Ctx-M-9 S70g In Complex With Hydrolyzed Piperacillin
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|2P74|A Chain A, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
pdb|2P74|B Chain B, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
pdb|3G2Y|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
pdb|3G2Y|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
pdb|4DDS|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
pdb|4DDS|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
pdb|4DDY|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 10
pdb|4DDY|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 10
pdb|4DE0|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 16
pdb|4DE0|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 16
pdb|4DE1|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 18
pdb|4DE1|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 18
pdb|4DE2|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
pdb|4DE2|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
pdb|4DE3|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
pdb|4DE3|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 318 DQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFL 376
D+ F +DR EP + A G P T+T +A T+R L + L T R + T+L
Sbjct: 132 DETFRLDR----TEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWL 186
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 519 TEGFKSSLLQVRGSIPLLWEQIVDLSYKPRLKIINHDQTPKVVERHFHDLLQRYGEIVAV 578
T+GF ++ +P+L EQI L+ + + +D T +V + D + G I+
Sbjct: 174 TKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGT 233
Query: 579 DLTDKHGD--------EGQLSAAYAAEMQKLPNVRYVSFDFHHVC 615
+ + D EG L + N Y SFD H+
Sbjct: 234 GVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLV 278
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 519 TEGFKSSLLQVRGSIPLLWEQIVDLSYKPRLKIINHDQTPKVVERHFHDLLQRYGEIVAV 578
T+GF ++ +P+L +QI + + + +D T +V ++ D + G I
Sbjct: 175 TKGFDIPNIENHDVVPMLQKQITKRNIPIEVVALINDTTGTLVASYYTDPETKMGVIFGT 234
Query: 579 DLTDKHGD--------EGQLSAAYAAEMQKLPNVRYVSFDFHHVC 615
+ + D +G+LS N Y SFD HV
Sbjct: 235 GVNGAYYDVCSDIEKLQGKLSDDIPPSAPMAINCEYGSFDNEHVV 279
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 298 DQLELLEFKDQYVIKSVESPDQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGV 351
+Q++ + + Q ++ +++ FSID G++E + SGSP +YGV
Sbjct: 88 NQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSP----FVYGV 137
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 298 DQLELLEFKDQYVIKSVESPDQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGV 351
+Q++ + + Q ++ +++ FSID G++E + SGSP +YGV
Sbjct: 96 NQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSP----FVYGV 145
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 298 DQLELLEFKDQYVIKSVESPDQGFSIDRRDGNIEPLNDEACSGSPSQTSTIYGV 351
+Q++ + + Q ++ +++ FSID G++E + SGSP +YGV
Sbjct: 96 NQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSP----FVYGV 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,626,736
Number of Sequences: 62578
Number of extensions: 1047011
Number of successful extensions: 2626
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 68
length of query: 828
length of database: 14,973,337
effective HSP length: 107
effective length of query: 721
effective length of database: 8,277,491
effective search space: 5968071011
effective search space used: 5968071011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)