Query 003337
Match_columns 828
No_of_seqs 473 out of 2071
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1889 Putative phosphoinosit 100.0 2E-149 4E-154 1230.3 42.3 530 296-827 1-575 (579)
2 COG5329 Phosphoinositide polyp 100.0 5E-110 1E-114 934.0 42.3 425 341-778 53-509 (570)
3 KOG1890 Phosphoinositide phosp 100.0 9E-107 2E-111 888.9 30.7 467 300-779 1-545 (949)
4 KOG1888 Putative phosphoinosit 100.0 1.4E-99 3E-104 862.5 37.8 481 297-784 15-577 (868)
5 KOG0566 Inositol-1,4,5-triphos 100.0 1.2E-93 2.7E-98 821.2 39.1 415 340-773 52-503 (1080)
6 PF02383 Syja_N: SacI homology 100.0 2.5E-73 5.4E-78 623.6 20.5 275 348-622 1-319 (319)
7 PTZ00062 glutaredoxin; Provisi 99.9 6.4E-25 1.4E-29 225.4 15.9 143 104-294 49-194 (204)
8 COG0278 Glutaredoxin-related p 99.9 1.8E-25 4E-30 199.1 10.1 94 198-294 3-97 (105)
9 KOG0911 Glutaredoxin-related p 99.9 1.7E-25 3.7E-30 226.9 11.2 171 94-293 47-219 (227)
10 PRK10824 glutaredoxin-4; Provi 99.9 1E-24 2.2E-29 204.3 11.4 97 198-297 3-100 (115)
11 TIGR00365 monothiol glutaredox 99.9 1.5E-22 3.3E-27 185.0 11.8 92 200-294 2-93 (97)
12 cd03028 GRX_PICOT_like Glutare 99.9 4.3E-22 9.3E-27 179.4 10.6 90 203-295 1-90 (90)
13 TIGR02189 GlrX-like_plant Glut 99.8 6.3E-21 1.4E-25 175.0 9.1 86 204-294 2-87 (99)
14 PHA03050 glutaredoxin; Provisi 99.8 1.8E-20 3.8E-25 174.6 10.6 96 200-300 3-102 (108)
15 KOG1752 Glutaredoxin and relat 99.8 7.7E-20 1.7E-24 168.3 10.8 90 199-293 3-92 (104)
16 PRK10638 glutaredoxin 3; Provi 99.6 6.3E-16 1.4E-20 136.9 9.6 76 211-294 3-78 (83)
17 TIGR02181 GRX_bact Glutaredoxi 99.6 5.8E-16 1.3E-20 135.4 8.8 76 212-295 1-76 (79)
18 cd03418 GRX_GRXb_1_3_like Glut 99.6 9.7E-16 2.1E-20 132.2 9.7 74 211-292 1-75 (75)
19 COG0695 GrxC Glutaredoxin and 99.6 9E-16 2E-20 135.5 9.4 79 210-294 1-79 (80)
20 cd03027 GRX_DEP Glutaredoxin ( 99.6 1.8E-15 3.9E-20 130.6 9.0 72 211-290 2-73 (73)
21 cd03419 GRX_GRXh_1_2_like Glut 99.6 2.6E-15 5.6E-20 131.5 9.3 79 211-294 1-79 (82)
22 TIGR02180 GRX_euk Glutaredoxin 99.6 4.4E-15 9.6E-20 130.3 8.8 78 212-294 1-80 (84)
23 TIGR02190 GlrX-dom Glutaredoxi 99.6 4.6E-15 1E-19 130.3 8.4 75 206-289 4-78 (79)
24 cd03029 GRX_hybridPRX5 Glutare 99.6 9.7E-15 2.1E-19 125.6 8.8 70 211-289 2-71 (72)
25 cd03031 GRX_GRX_like Glutaredo 99.6 9E-15 2E-19 143.2 9.1 82 211-300 1-93 (147)
26 TIGR02183 GRXA Glutaredoxin, G 99.5 3.9E-14 8.5E-19 126.6 9.3 73 212-292 2-81 (86)
27 PRK11200 grxA glutaredoxin 1; 99.5 4.7E-14 1E-18 125.4 9.4 74 211-292 2-82 (85)
28 cd02066 GRX_family Glutaredoxi 99.5 2.5E-13 5.4E-18 114.4 9.3 71 211-289 1-71 (72)
29 cd03030 GRX_SH3BGR Glutaredoxi 99.4 1.3E-12 2.8E-17 118.4 7.9 80 212-294 2-86 (92)
30 PF00462 Glutaredoxin: Glutare 99.4 1.5E-12 3.3E-17 108.0 7.7 60 212-279 1-60 (60)
31 PRK12759 bifunctional gluaredo 99.3 1.4E-12 3E-17 148.3 8.2 87 211-304 3-95 (410)
32 TIGR02194 GlrX_NrdH Glutaredox 99.2 3.6E-11 7.7E-16 103.7 7.4 64 212-284 1-65 (72)
33 PRK10329 glutaredoxin-like pro 99.2 7.7E-11 1.7E-15 104.4 8.7 65 211-284 2-66 (81)
34 TIGR02196 GlrX_YruB Glutaredox 98.8 1.4E-08 2.9E-13 86.0 8.7 66 211-284 1-66 (74)
35 cd02976 NrdH NrdH-redoxin (Nrd 98.8 3.2E-08 7E-13 83.5 8.8 66 211-284 1-66 (73)
36 TIGR02200 GlrX_actino Glutared 98.5 4.6E-07 1E-11 77.8 8.1 63 211-281 1-65 (77)
37 cd02973 TRX_GRX_like Thioredox 98.5 4.1E-07 8.8E-12 76.7 7.0 59 211-281 2-65 (67)
38 PF04908 SH3BGR: SH3-binding, 98.3 2.1E-06 4.5E-11 78.9 7.8 77 211-293 2-91 (99)
39 KOG2824 Glutaredoxin-related p 98.3 8.9E-07 1.9E-11 93.6 5.7 90 209-301 130-225 (281)
40 cd03041 GST_N_2GST_N GST_N fam 98.1 1.9E-05 4.1E-10 68.9 9.0 71 212-290 2-74 (77)
41 cd00570 GST_N_family Glutathio 98.1 1.5E-05 3.3E-10 65.7 8.0 68 213-288 2-69 (71)
42 cd03037 GST_N_GRX2 GST_N famil 97.9 4.3E-05 9.3E-10 65.2 8.1 68 213-290 2-70 (71)
43 cd03040 GST_N_mPGES2 GST_N fam 97.9 5E-05 1.1E-09 65.8 8.4 70 211-291 1-74 (77)
44 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 0.00013 2.7E-09 66.0 7.6 70 199-280 3-77 (89)
45 cd03036 ArsC_like Arsenate Red 97.6 5.4E-05 1.2E-09 71.1 4.1 44 212-263 1-44 (111)
46 cd03060 GST_N_Omega_like GST_N 97.6 0.00019 4E-09 61.4 6.9 66 213-287 2-68 (71)
47 cd03059 GST_N_SspA GST_N famil 97.6 0.00023 5E-09 60.6 7.0 69 213-290 2-70 (73)
48 cd03055 GST_N_Omega GST_N fami 97.5 0.00031 6.8E-09 63.0 7.4 69 211-288 18-87 (89)
49 TIGR02187 GlrX_arch Glutaredox 97.5 0.0016 3.6E-08 68.0 13.7 121 111-277 65-195 (215)
50 TIGR00411 redox_disulf_1 small 97.4 0.00056 1.2E-08 59.4 8.1 55 211-277 2-62 (82)
51 cd02977 ArsC_family Arsenate R 97.4 0.00028 6.1E-09 65.3 5.8 45 212-264 1-45 (105)
52 PF13417 GST_N_3: Glutathione 97.4 0.00042 9.1E-09 60.0 6.6 69 214-291 1-69 (75)
53 PRK01655 spxA transcriptional 97.3 0.00043 9.2E-09 67.1 5.8 44 212-263 2-45 (131)
54 cd03051 GST_N_GTT2_like GST_N 97.3 0.0007 1.5E-08 57.4 6.4 69 213-287 2-71 (74)
55 cd03045 GST_N_Delta_Epsilon GS 97.2 0.0011 2.4E-08 56.6 7.2 70 213-288 2-71 (74)
56 PF05768 DUF836: Glutaredoxin- 97.2 0.0017 3.6E-08 57.5 8.3 53 211-276 1-57 (81)
57 cd03056 GST_N_4 GST_N family, 97.1 0.0022 4.7E-08 54.4 7.5 70 213-288 2-71 (73)
58 cd02975 PfPDO_like_N Pyrococcu 97.0 0.0028 6.1E-08 59.6 8.5 64 199-274 11-81 (113)
59 TIGR01617 arsC_related transcr 97.0 0.00099 2.1E-08 63.1 5.5 43 212-262 1-43 (117)
60 cd03032 ArsC_Spx Arsenate Redu 97.0 0.0012 2.5E-08 62.4 5.6 35 212-251 2-36 (115)
61 PRK12559 transcriptional regul 96.9 0.002 4.3E-08 62.5 6.6 35 212-251 2-36 (131)
62 PHA02125 thioredoxin-like prot 96.9 0.0028 6E-08 55.0 6.6 55 212-279 2-56 (75)
63 TIGR00412 redox_disulf_2 small 96.9 0.0038 8.2E-08 54.5 7.3 49 223-279 8-60 (76)
64 PRK13344 spxA transcriptional 96.8 0.0023 5E-08 62.1 6.5 35 212-251 2-36 (132)
65 cd03054 GST_N_Metaxin GST_N fa 96.8 0.0029 6.2E-08 54.1 6.1 57 223-290 14-70 (72)
66 cd03061 GST_N_CLIC GST_N famil 96.8 0.0055 1.2E-07 55.7 8.0 76 212-291 6-84 (91)
67 cd03035 ArsC_Yffb Arsenate Red 96.7 0.0028 6.2E-08 59.0 5.9 45 212-261 1-46 (105)
68 TIGR01295 PedC_BrcD bacterioci 96.7 0.014 3E-07 55.8 10.1 75 203-282 16-106 (122)
69 cd03053 GST_N_Phi GST_N family 96.4 0.014 3.1E-07 50.0 7.7 73 212-290 2-74 (76)
70 TIGR03140 AhpF alkyl hydropero 96.4 0.0041 8.9E-08 73.4 5.5 77 193-281 102-183 (515)
71 PRK15317 alkyl hydroperoxide r 96.4 0.0089 1.9E-07 70.6 8.3 75 194-280 102-181 (517)
72 PF13192 Thioredoxin_3: Thiore 96.3 0.02 4.3E-07 49.9 8.2 49 223-279 8-60 (76)
73 cd03033 ArsC_15kD Arsenate Red 96.3 0.0079 1.7E-07 56.9 5.9 45 212-261 2-47 (113)
74 cd03058 GST_N_Tau GST_N family 96.3 0.015 3.3E-07 49.8 7.3 69 213-290 2-71 (74)
75 cd03052 GST_N_GDAP1 GST_N fami 96.2 0.015 3.2E-07 50.3 6.8 70 213-288 2-71 (73)
76 cd03076 GST_N_Pi GST_N family, 96.1 0.025 5.5E-07 48.6 7.7 71 211-290 1-71 (73)
77 cd02953 DsbDgamma DsbD gamma f 96.1 0.017 3.7E-07 52.7 6.9 66 202-274 3-78 (104)
78 cd02949 TRX_NTR TRX domain, no 96.0 0.039 8.4E-07 49.9 9.0 60 210-280 14-81 (97)
79 PF13409 GST_N_2: Glutathione 96.0 0.0072 1.6E-07 51.7 3.9 68 224-291 1-69 (70)
80 COG4545 Glutaredoxin-related p 95.8 0.027 5.9E-07 48.9 6.3 70 209-287 2-83 (85)
81 cd03042 GST_N_Zeta GST_N famil 95.8 0.03 6.5E-07 47.4 6.6 65 223-288 7-71 (73)
82 cd03049 GST_N_3 GST_N family, 95.7 0.027 5.9E-07 48.0 6.3 67 213-288 2-71 (73)
83 TIGR03143 AhpF_homolog putativ 95.7 0.028 6.1E-07 67.0 8.6 75 192-278 460-539 (555)
84 KOG3029 Glutathione S-transfer 95.7 0.031 6.7E-07 59.8 7.7 57 211-278 90-146 (370)
85 cd03080 GST_N_Metaxin_like GST 95.7 0.036 7.8E-07 47.8 6.9 56 224-290 16-71 (75)
86 PHA02278 thioredoxin-like prot 95.7 0.073 1.6E-06 49.4 9.3 66 207-279 12-85 (103)
87 TIGR02182 GRXB Glutaredoxin, G 95.5 0.039 8.5E-07 57.2 7.6 64 223-291 6-70 (209)
88 cd02947 TRX_family TRX family; 95.5 0.076 1.6E-06 45.7 8.2 64 205-279 5-76 (93)
89 cd03039 GST_N_Sigma_like GST_N 95.3 0.065 1.4E-06 45.6 7.1 69 213-289 2-70 (72)
90 cd02989 Phd_like_TxnDC9 Phosdu 95.3 0.1 2.3E-06 49.0 9.1 69 208-287 21-96 (113)
91 TIGR00014 arsC arsenate reduct 95.2 0.041 8.9E-07 52.0 6.0 48 212-265 1-49 (114)
92 cd02954 DIM1 Dim1 family; Dim1 95.2 0.08 1.7E-06 50.2 7.8 66 203-280 5-82 (114)
93 TIGR02187 GlrX_arch Glutaredox 95.2 0.094 2E-06 54.8 9.2 70 203-279 14-90 (215)
94 PTZ00051 thioredoxin; Provisio 95.1 0.13 2.8E-06 46.1 8.9 69 202-282 10-87 (98)
95 PRK10387 glutaredoxin 2; Provi 95.0 0.063 1.4E-06 55.1 7.4 69 213-291 2-71 (210)
96 COG1393 ArsC Arsenate reductas 95.0 0.056 1.2E-06 51.5 6.3 36 211-251 2-37 (117)
97 cd03034 ArsC_ArsC Arsenate Red 94.9 0.051 1.1E-06 51.1 5.9 49 212-265 1-49 (112)
98 cd01659 TRX_superfamily Thiore 94.9 0.064 1.4E-06 41.8 5.6 55 213-276 2-61 (69)
99 cd02985 TRX_CDSP32 TRX family, 94.8 0.18 3.9E-06 46.3 9.0 64 209-280 15-85 (103)
100 TIGR01616 nitro_assoc nitrogen 94.8 0.061 1.3E-06 51.9 6.1 47 211-262 2-49 (126)
101 cd03038 GST_N_etherase_LigE GS 94.8 0.053 1.1E-06 47.8 5.2 66 223-290 14-80 (84)
102 cd03050 GST_N_Theta GST_N fami 94.6 0.13 2.9E-06 44.2 7.3 71 213-289 2-72 (76)
103 cd02955 SSP411 TRX domain, SSP 94.6 0.16 3.5E-06 48.8 8.5 77 201-282 6-97 (124)
104 PRK10026 arsenate reductase; P 94.5 0.092 2E-06 51.6 6.6 46 211-261 3-49 (141)
105 PRK10853 putative reductase; P 94.5 0.073 1.6E-06 50.7 5.7 45 212-261 2-47 (118)
106 cd03048 GST_N_Ure2p_like GST_N 94.4 0.18 4E-06 43.8 7.7 72 212-290 2-76 (81)
107 cd02951 SoxW SoxW family; SoxW 94.4 0.15 3.2E-06 48.2 7.6 72 201-276 4-93 (125)
108 cd02994 PDI_a_TMX PDIa family, 93.9 0.17 3.7E-06 45.8 6.8 63 203-277 11-82 (101)
109 cd03044 GST_N_EF1Bgamma GST_N 93.9 0.19 4.1E-06 43.3 6.7 64 223-288 7-71 (75)
110 cd03043 GST_N_1 GST_N family, 93.9 0.19 4.1E-06 43.2 6.6 65 222-288 7-71 (73)
111 TIGR01068 thioredoxin thioredo 93.6 0.47 1E-05 42.1 9.0 59 211-280 16-82 (101)
112 COG3118 Thioredoxin domain-con 93.5 0.18 3.8E-06 55.0 6.9 77 198-285 32-116 (304)
113 KOG4023 Uncharacterized conser 93.4 0.064 1.4E-06 49.0 2.9 80 210-292 2-90 (108)
114 PRK09481 sspA stringent starva 93.4 0.23 4.9E-06 51.4 7.5 69 211-288 10-78 (211)
115 PRK13728 conjugal transfer pro 93.3 0.51 1.1E-05 48.4 9.6 54 180-250 53-110 (181)
116 cd02959 ERp19 Endoplasmic reti 93.2 0.23 4.9E-06 47.1 6.5 49 198-250 7-62 (117)
117 cd02957 Phd_like Phosducin (Ph 93.1 0.68 1.5E-05 43.1 9.5 66 210-288 25-98 (113)
118 cd02963 TRX_DnaJ TRX domain, D 93.0 0.48 1E-05 44.1 8.3 61 208-279 23-92 (111)
119 PF14595 Thioredoxin_9: Thiore 92.9 0.059 1.3E-06 52.2 2.0 79 195-282 28-114 (129)
120 cd02948 TRX_NDPK TRX domain, T 92.8 0.77 1.7E-05 42.0 9.3 65 203-279 10-84 (102)
121 PF00085 Thioredoxin: Thioredo 92.8 0.55 1.2E-05 41.8 8.2 61 209-280 17-85 (103)
122 cd03047 GST_N_2 GST_N family, 92.6 0.54 1.2E-05 40.0 7.5 64 223-287 7-70 (73)
123 PF01541 GIY-YIG: GIY-YIG cata 92.5 0.12 2.6E-06 44.5 3.4 34 91-124 1-34 (80)
124 cd02984 TRX_PICOT TRX domain, 92.3 0.57 1.2E-05 41.7 7.6 59 210-279 15-81 (97)
125 PLN02817 glutathione dehydroge 92.2 0.17 3.6E-06 55.0 4.7 63 224-290 72-134 (265)
126 KOG0910 Thioredoxin-like prote 92.1 0.48 1E-05 46.9 7.3 70 198-279 49-128 (150)
127 cd02956 ybbN ybbN protein fami 92.0 0.72 1.6E-05 41.1 7.9 59 210-279 13-79 (96)
128 cd03057 GST_N_Beta GST_N famil 92.0 0.61 1.3E-05 40.1 7.1 65 223-289 7-72 (77)
129 PF03960 ArsC: ArsC family; I 91.9 0.29 6.4E-06 45.7 5.4 29 223-251 4-32 (110)
130 PRK09381 trxA thioredoxin; Pro 91.8 0.67 1.5E-05 42.5 7.7 61 209-280 21-89 (109)
131 TIGR00862 O-ClC intracellular 91.7 0.37 8E-06 51.4 6.6 65 223-291 17-81 (236)
132 cd02962 TMX2 TMX2 family; comp 91.7 0.75 1.6E-05 45.8 8.3 65 212-284 51-126 (152)
133 cd03000 PDI_a_TMX3 PDIa family 91.6 0.44 9.5E-06 43.5 6.1 65 199-274 5-78 (104)
134 PRK10996 thioredoxin 2; Provis 91.2 1.1 2.3E-05 43.7 8.7 66 203-279 45-119 (139)
135 cd02996 PDI_a_ERp44 PDIa famil 91.2 0.78 1.7E-05 42.1 7.4 63 203-277 11-89 (108)
136 cd02993 PDI_a_APS_reductase PD 91.1 0.95 2.1E-05 41.8 7.8 46 223-273 31-83 (109)
137 cd03003 PDI_a_ERdj5_N PDIa fam 91.1 0.76 1.6E-05 41.6 7.1 64 203-277 11-83 (101)
138 cd02950 TxlA TRX-like protein 91.0 0.95 2.1E-05 44.3 8.2 68 203-279 13-90 (142)
139 PF13098 Thioredoxin_2: Thiore 91.0 0.46 1E-05 43.6 5.7 72 211-287 8-107 (112)
140 PRK10877 protein disulfide iso 90.8 0.77 1.7E-05 48.8 7.9 31 210-245 109-142 (232)
141 cd02961 PDI_a_family Protein D 90.8 0.95 2.1E-05 39.6 7.4 63 202-274 7-77 (101)
142 cd03046 GST_N_GTT1_like GST_N 90.6 1 2.2E-05 38.2 7.1 64 226-290 9-72 (76)
143 KOG0406 Glutathione S-transfer 90.6 0.66 1.4E-05 49.2 6.9 74 210-292 8-82 (231)
144 PRK15113 glutathione S-transfe 90.5 0.88 1.9E-05 47.2 7.8 74 210-287 4-77 (214)
145 cd03005 PDI_a_ERp46 PDIa famil 90.3 0.87 1.9E-05 40.8 6.7 66 203-279 10-86 (102)
146 cd02965 HyaE HyaE family; HyaE 90.0 1.7 3.7E-05 41.1 8.5 63 210-283 28-100 (111)
147 cd03065 PDI_b_Calsequestrin_N 89.7 1.7 3.7E-05 41.6 8.4 69 201-280 17-101 (120)
148 PLN02378 glutathione S-transfe 89.5 0.83 1.8E-05 47.5 6.7 63 223-289 18-80 (213)
149 cd03004 PDI_a_ERdj5_C PDIa fam 89.0 1.5 3.3E-05 39.7 7.2 45 223-274 29-79 (104)
150 PF13899 Thioredoxin_7: Thiore 88.9 0.79 1.7E-05 40.2 5.1 67 198-274 5-79 (82)
151 cd02987 Phd_like_Phd Phosducin 88.5 2.1 4.6E-05 43.5 8.6 64 211-286 85-155 (175)
152 cd02952 TRP14_like Human TRX-r 88.4 0.97 2.1E-05 43.2 5.7 66 209-274 21-96 (119)
153 TIGR01126 pdi_dom protein disu 88.4 1.1 2.3E-05 40.0 5.8 60 203-274 6-75 (102)
154 PRK10545 nucleotide excision r 88.4 0.39 8.5E-06 52.6 3.4 65 51-123 2-67 (286)
155 cd03078 GST_N_Metaxin1_like GS 88.2 1.1 2.5E-05 38.8 5.6 56 224-290 15-70 (73)
156 PF13728 TraF: F plasmid trans 87.6 2.1 4.6E-05 45.0 8.3 72 198-274 110-189 (215)
157 cd03001 PDI_a_P5 PDIa family, 87.6 2.5 5.4E-05 37.9 7.7 61 203-274 10-78 (103)
158 cd03002 PDI_a_MPD1_like PDI fa 87.3 1.6 3.5E-05 39.7 6.4 47 223-274 28-80 (109)
159 KOG1422 Intracellular Cl- chan 87.0 1.1 2.4E-05 46.7 5.4 65 224-292 20-84 (221)
160 cd02986 DLP Dim1 family, Dim1- 86.9 2.3 5.1E-05 40.4 7.2 59 209-279 14-81 (114)
161 smart00465 GIYc GIY-YIG type n 86.7 0.8 1.7E-05 39.5 3.8 63 91-154 1-73 (84)
162 PLN02473 glutathione S-transfe 86.6 2.2 4.8E-05 43.9 7.7 73 212-290 3-75 (214)
163 KOG4244 Failed axon connection 86.6 0.86 1.9E-05 48.9 4.6 77 203-290 37-115 (281)
164 cd03006 PDI_a_EFP1_N PDIa fami 86.3 1.3 2.9E-05 41.8 5.3 49 223-277 39-95 (113)
165 cd02999 PDI_a_ERp44_like PDIa 86.2 2.2 4.7E-05 39.1 6.5 57 208-274 17-78 (100)
166 TIGR01262 maiA maleylacetoacet 86.2 1.4 2.9E-05 45.2 5.8 68 223-290 6-73 (210)
167 cd02998 PDI_a_ERp38 PDIa famil 85.9 2.1 4.6E-05 38.2 6.3 48 223-274 28-81 (105)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 85.8 3.1 6.7E-05 42.7 8.2 32 209-245 78-111 (197)
169 TIGR02740 TraF-like TraF-like 84.6 2.4 5.2E-05 46.2 7.1 44 202-250 160-207 (271)
170 PF06953 ArsD: Arsenical resis 83.6 2.3 5.1E-05 40.9 5.6 59 229-288 30-94 (123)
171 PTZ00062 glutaredoxin; Provisi 83.3 4.3 9.2E-05 42.5 7.9 66 201-283 7-79 (204)
172 PTZ00443 Thioredoxin domain-co 82.7 6.1 0.00013 42.0 8.9 50 223-279 62-119 (224)
173 PRK00293 dipZ thiol:disulfide 82.3 4.5 9.8E-05 48.7 8.7 71 197-274 461-540 (571)
174 PRK15412 thiol:disulfide inter 82.3 6.6 0.00014 40.0 8.8 61 208-276 67-130 (185)
175 cd02992 PDI_a_QSOX PDIa family 81.9 2 4.3E-05 40.3 4.4 63 203-274 11-84 (114)
176 PF11009 DUF2847: Protein of u 81.5 10 0.00022 35.6 8.8 66 207-279 17-91 (105)
177 COG3019 Predicted metal-bindin 81.3 5 0.00011 39.4 6.9 75 210-292 26-103 (149)
178 cd03008 TryX_like_RdCVF Trypar 81.3 4.2 9.2E-05 40.3 6.7 54 206-263 22-87 (146)
179 TIGR00385 dsbE periplasmic pro 81.2 5.6 0.00012 40.0 7.7 64 205-276 59-125 (173)
180 cd03079 GST_N_Metaxin2 GST_N f 80.9 4.9 0.00011 35.2 6.2 58 223-290 15-72 (74)
181 COG3634 AhpF Alkyl hydroperoxi 80.7 4.3 9.3E-05 45.5 7.0 95 191-292 99-197 (520)
182 TIGR02739 TraF type-F conjugat 80.2 5.1 0.00011 43.4 7.3 48 198-250 140-191 (256)
183 TIGR01453 grpIintron_endo grou 79.8 18 0.00039 38.1 11.2 64 91-154 1-78 (214)
184 COG2999 GrxB Glutaredoxin 2 [P 79.7 1.9 4E-05 43.9 3.5 60 223-287 7-67 (215)
185 cd02997 PDI_a_PDIR PDIa family 79.5 6.1 0.00013 35.3 6.7 52 223-279 27-88 (104)
186 cd03009 TryX_like_TryX_NRX Try 79.2 6 0.00013 37.4 6.8 49 208-262 17-74 (131)
187 cd03077 GST_N_Alpha GST_N fami 78.9 6.9 0.00015 34.1 6.6 68 213-289 3-72 (79)
188 cd02988 Phd_like_VIAF Phosduci 78.3 11 0.00023 39.0 8.9 74 200-288 90-174 (192)
189 cd03010 TlpA_like_DsbE TlpA-li 78.0 9.9 0.00022 35.6 7.9 61 208-276 24-88 (127)
190 cd02958 UAS UAS family; UAS is 77.8 4.7 0.0001 37.5 5.5 69 198-273 5-81 (114)
191 PLN00410 U5 snRNP protein, DIM 77.7 6.1 0.00013 39.0 6.5 33 213-250 28-66 (142)
192 cd02995 PDI_a_PDI_a'_C PDIa fa 77.2 6.7 0.00015 34.9 6.2 60 203-274 10-79 (104)
193 PRK13703 conjugal pilus assemb 76.5 7.8 0.00017 41.8 7.4 46 199-249 134-183 (248)
194 TIGR00424 APS_reduc 5'-adenyly 75.8 8 0.00017 45.4 7.8 56 209-274 371-434 (463)
195 cd02972 DsbA_family DsbA famil 75.7 6.8 0.00015 33.9 5.7 60 212-276 1-91 (98)
196 PF03190 Thioredox_DsbH: Prote 75.6 5.8 0.00013 40.1 5.8 79 200-282 27-119 (163)
197 cd02964 TryX_like_family Trypa 75.6 11 0.00025 35.8 7.7 50 208-263 16-74 (132)
198 COG0625 Gst Glutathione S-tran 75.5 6.3 0.00014 40.5 6.3 66 223-290 7-73 (211)
199 KOG0907 Thioredoxin [Posttrans 75.3 4.6 9.9E-05 37.8 4.7 64 210-284 22-96 (106)
200 PLN02309 5'-adenylylsulfate re 75.2 7.7 0.00017 45.5 7.5 47 223-274 375-428 (457)
201 PRK10357 putative glutathione 72.8 6.9 0.00015 39.9 5.7 60 223-286 7-67 (202)
202 PLN02395 glutathione S-transfe 72.5 12 0.00025 38.5 7.4 72 212-290 3-74 (215)
203 PTZ00102 disulphide isomerase; 72.2 15 0.00032 42.7 9.0 54 210-274 376-437 (477)
204 cd02966 TlpA_like_family TlpA- 71.9 9.8 0.00021 33.7 5.9 57 209-272 19-82 (116)
205 TIGR01130 ER_PDI_fam protein d 71.4 11 0.00023 43.3 7.5 65 202-278 10-87 (462)
206 KOG3425 Uncharacterized conser 71.2 7.9 0.00017 37.1 5.1 54 197-250 13-76 (128)
207 PRK07883 hypothetical protein; 70.8 3.6 7.8E-05 49.4 3.6 41 83-123 209-249 (557)
208 cd02967 mauD Methylamine utili 70.3 9 0.0002 35.0 5.4 60 208-273 20-83 (114)
209 TIGR02661 MauD methylamine deh 69.6 21 0.00045 36.5 8.4 48 208-262 73-124 (189)
210 TIGR02738 TrbB type-F conjugat 68.8 13 0.00029 37.0 6.5 38 208-250 50-91 (153)
211 PRK00558 uvrC excinuclease ABC 68.4 4.9 0.00011 48.7 4.0 69 86-154 9-84 (598)
212 TIGR00194 uvrC excinuclease AB 67.3 5.8 0.00013 47.8 4.3 69 86-154 6-80 (574)
213 PRK14671 uvrC excinuclease ABC 66.5 13 0.00029 45.2 7.1 69 86-154 17-93 (621)
214 PF06110 DUF953: Eukaryotic pr 63.7 7.2 0.00016 37.4 3.3 74 198-274 7-95 (119)
215 PRK14666 uvrC excinuclease ABC 63.3 7.3 0.00016 47.6 4.1 69 86-154 7-83 (694)
216 PTZ00102 disulphide isomerase; 63.1 19 0.00042 41.8 7.5 64 203-278 42-118 (477)
217 PRK14018 trifunctional thiored 62.7 43 0.00094 40.0 10.2 27 208-238 55-81 (521)
218 PRK13972 GSH-dependent disulfi 62.4 27 0.0006 35.9 7.8 55 213-274 3-57 (215)
219 cd03011 TlpA_like_ScsD_MtbDsbE 62.2 12 0.00026 34.7 4.5 83 208-313 19-102 (123)
220 PF10568 Tom37: Outer mitochon 61.9 18 0.00039 31.5 5.2 54 225-289 14-71 (72)
221 PF07315 DUF1462: Protein of u 60.9 24 0.00051 32.2 5.8 56 226-281 16-80 (93)
222 cd02982 PDI_b'_family Protein 60.9 17 0.00038 32.4 5.3 54 209-274 12-74 (103)
223 PRK11752 putative S-transferas 60.9 26 0.00056 37.9 7.5 76 206-288 39-124 (264)
224 PF00578 AhpC-TSA: AhpC/TSA fa 60.6 21 0.00045 32.9 5.9 63 203-274 20-89 (124)
225 smart00594 UAS UAS domain. 60.2 39 0.00086 31.9 7.8 68 198-274 15-92 (122)
226 cd02970 PRX_like2 Peroxiredoxi 60.0 48 0.001 31.4 8.5 62 203-273 17-86 (149)
227 PF08534 Redoxin: Redoxin; In 59.5 33 0.00072 32.8 7.3 59 207-273 26-91 (146)
228 PRK12306 uvrC excinuclease ABC 59.4 9.1 0.0002 45.6 3.9 38 86-123 5-42 (519)
229 cd02960 AGR Anterior Gradient 59.3 14 0.00031 35.9 4.6 34 198-235 11-45 (130)
230 TIGR03143 AhpF_homolog putativ 58.7 85 0.0018 37.7 12.0 71 192-274 346-425 (555)
231 PRK11657 dsbG disulfide isomer 58.2 9.3 0.0002 41.2 3.4 33 210-247 119-155 (251)
232 cd03007 PDI_a_ERp29_N PDIa fam 57.8 51 0.0011 31.5 7.9 71 203-276 11-90 (116)
233 PRK14669 uvrC excinuclease ABC 57.7 9 0.00019 46.6 3.5 71 84-154 6-84 (624)
234 PRK14672 uvrC excinuclease ABC 56.5 12 0.00026 45.8 4.2 69 86-154 16-90 (691)
235 PF13905 Thioredoxin_8: Thiore 56.4 15 0.00033 32.4 4.0 83 211-313 3-91 (95)
236 cd03017 PRX_BCP Peroxiredoxin 55.9 64 0.0014 30.4 8.5 56 209-272 23-85 (140)
237 PF02798 GST_N: Glutathione S- 55.8 57 0.0012 28.0 7.4 62 225-287 9-72 (76)
238 PRK09437 bcp thioredoxin-depen 55.7 68 0.0015 31.1 8.9 58 207-272 28-92 (154)
239 PF06764 DUF1223: Protein of u 55.0 15 0.00032 38.5 4.2 76 212-292 2-97 (202)
240 PRK03147 thiol-disulfide oxido 53.7 53 0.0011 32.3 7.8 48 208-261 60-114 (173)
241 cd03075 GST_N_Mu GST_N family, 53.5 73 0.0016 27.9 7.8 63 225-287 9-76 (82)
242 PRK14668 uvrC excinuclease ABC 53.1 23 0.00051 42.8 6.0 68 86-154 11-83 (577)
243 COG2143 Thioredoxin-related pr 53.1 52 0.0011 33.2 7.2 37 198-237 30-66 (182)
244 cd02969 PRX_like1 Peroxiredoxi 53.0 82 0.0018 31.2 9.1 64 203-272 19-94 (171)
245 cd03012 TlpA_like_DipZ_like Tl 51.4 53 0.0012 30.8 7.1 88 203-314 18-115 (126)
246 KOG0868 Glutathione S-transfer 50.6 27 0.00058 35.9 5.0 77 211-292 5-81 (217)
247 KOG0190 Protein disulfide isom 49.4 36 0.00078 40.2 6.5 70 201-278 33-111 (493)
248 PTZ00057 glutathione s-transfe 48.1 71 0.0015 32.7 8.0 73 211-290 4-80 (205)
249 TIGR01130 ER_PDI_fam protein d 48.1 48 0.001 38.0 7.4 53 209-274 364-425 (462)
250 TIGR01162 purE phosphoribosyla 47.7 33 0.00071 34.5 5.1 75 213-290 2-100 (156)
251 cd02968 SCO SCO (an acronym fo 47.3 93 0.002 29.4 8.1 59 208-272 21-91 (142)
252 KOG0908 Thioredoxin-like prote 46.8 18 0.00039 39.0 3.2 36 118-153 69-107 (288)
253 PLN02919 haloacid dehalogenase 46.0 1.4E+02 0.0031 39.0 11.7 29 206-238 417-445 (1057)
254 cd03018 PRX_AhpE_like Peroxire 45.7 89 0.0019 29.8 7.8 61 203-272 22-90 (149)
255 cd02971 PRX_family Peroxiredox 45.6 87 0.0019 29.4 7.6 58 208-272 21-85 (140)
256 COG4837 Uncharacterized protei 45.2 59 0.0013 29.9 5.7 70 207-280 2-86 (106)
257 PHA03075 glutaredoxin-like pro 44.4 21 0.00046 34.0 3.0 33 210-247 3-35 (123)
258 PRK10542 glutathionine S-trans 41.4 54 0.0012 33.1 5.8 62 228-289 11-73 (201)
259 KOG2501 Thioredoxin, nucleored 41.0 60 0.0013 32.7 5.7 57 203-263 27-90 (157)
260 COG5494 Predicted thioredoxin/ 39.3 45 0.00098 35.0 4.7 68 209-288 10-83 (265)
261 PF15214 PXT1: Peroxisomal tes 38.8 7.9 0.00017 30.9 -0.6 10 455-464 42-51 (51)
262 PTZ00256 glutathione peroxidas 38.8 1.3E+02 0.0028 30.5 8.0 50 223-273 51-112 (183)
263 PF04134 DUF393: Protein of un 37.3 54 0.0012 30.3 4.6 66 223-292 5-77 (114)
264 cd00340 GSH_Peroxidase Glutath 37.0 79 0.0017 30.8 6.0 59 208-272 21-91 (152)
265 KOG0908 Thioredoxin-like prote 36.9 46 0.001 36.0 4.4 58 210-279 23-87 (288)
266 PTZ00056 glutathione peroxidas 36.5 99 0.0021 32.0 6.9 60 208-273 38-109 (199)
267 PRK14667 uvrC excinuclease ABC 35.8 24 0.00053 42.5 2.5 75 79-154 4-85 (567)
268 PLN02412 probable glutathione 35.8 1.4E+02 0.003 29.9 7.6 61 208-273 28-100 (167)
269 PLN02399 phospholipid hydroper 35.0 1.3E+02 0.0027 32.4 7.5 60 208-272 98-169 (236)
270 cd03023 DsbA_Com1_like DsbA fa 35.0 38 0.00083 32.2 3.3 58 230-289 87-150 (154)
271 cd03023 DsbA_Com1_like DsbA fa 34.9 30 0.00064 32.9 2.6 22 211-237 8-29 (154)
272 KOG0867 Glutathione S-transfer 34.4 1.1E+02 0.0024 32.3 7.0 71 211-287 2-72 (226)
273 COG0526 TrxA Thiol-disulfide i 33.3 82 0.0018 27.0 5.0 26 223-248 42-73 (127)
274 cd03016 PRX_1cys Peroxiredoxin 30.4 1.3E+02 0.0028 31.1 6.6 67 203-272 19-93 (203)
275 KOG1695 Glutathione S-transfer 29.0 1.1E+02 0.0024 32.2 5.7 65 223-291 10-74 (206)
276 cd05295 MDH_like Malate dehydr 28.1 1.2E+02 0.0025 35.8 6.3 68 223-292 2-84 (452)
277 cd03022 DsbA_HCCA_Iso DsbA fam 27.6 70 0.0015 32.0 3.9 59 229-289 124-188 (192)
278 COG0322 UvrC Nuclease subunit 27.5 67 0.0015 38.9 4.3 69 86-154 10-84 (581)
279 cd03014 PRX_Atyp2cys Peroxired 27.0 1.7E+02 0.0038 27.7 6.4 58 208-272 25-87 (143)
280 cd03019 DsbA_DsbA DsbA family, 26.4 56 0.0012 32.1 3.0 35 209-248 16-56 (178)
281 PLN02948 phosphoribosylaminoim 25.8 2.9E+02 0.0063 33.6 9.3 127 119-291 361-513 (577)
282 TIGR01626 ytfJ_HI0045 conserve 25.6 2.6E+02 0.0057 28.8 7.7 40 206-250 57-105 (184)
283 PF07661 MORN_2: MORN repeat v 23.6 88 0.0019 20.0 2.5 18 92-109 2-19 (22)
284 PRK13599 putative peroxiredoxi 23.5 2E+02 0.0044 30.2 6.6 63 208-273 27-97 (215)
285 TIGR03137 AhpC peroxiredoxin. 23.4 1.9E+02 0.004 29.5 6.2 38 208-249 30-75 (187)
286 PF06620 DUF1150: Protein of u 23.3 1.3E+02 0.0028 26.7 4.2 34 84-117 31-64 (76)
287 PRK00329 GIY-YIG nuclease supe 23.1 1.1E+02 0.0023 27.7 3.8 31 93-124 8-38 (86)
288 COG0041 PurE Phosphoribosylcar 22.8 2.2E+02 0.0049 28.7 6.2 48 211-261 4-51 (162)
289 cd03015 PRX_Typ2cys Peroxiredo 22.7 2.7E+02 0.0059 27.7 7.1 39 208-249 28-73 (173)
290 TIGR02540 gpx7 putative glutat 22.6 92 0.002 30.4 3.6 61 208-273 21-93 (153)
291 PF01323 DSBA: DSBA-like thior 22.5 56 0.0012 32.6 2.1 59 229-289 124-189 (193)
292 PF13462 Thioredoxin_4: Thiore 22.3 69 0.0015 30.9 2.7 33 211-248 15-55 (162)
293 PF04566 RNA_pol_Rpb2_4: RNA p 22.2 1.4E+02 0.0031 25.4 4.1 16 272-287 1-16 (63)
294 PF13462 Thioredoxin_4: Thiore 21.7 1.2E+02 0.0027 29.1 4.3 27 262-288 130-156 (162)
295 PRK15000 peroxidase; Provision 21.0 2.5E+02 0.0055 29.1 6.6 45 203-250 28-79 (200)
296 PHA02598 denA endonuclease II; 20.1 1.3E+02 0.0028 29.7 3.8 32 90-122 32-63 (138)
No 1
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-149 Score=1230.35 Aligned_cols=530 Identities=41% Similarity=0.727 Sum_probs=495.7
Q ss_pred ccchhhhhcccceEEEEeCCCCCcc-EEEECCCCceeccCCCCCCCCCCceeeEEEEEEEEEecCceEEEEEeCeeeeee
Q 003337 296 LHDQLELLEFKDQYVIKSVESPDQG-FSIDRRDGNIEPLNDEACSGSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGT 374 (828)
Q Consensus 296 Ll~~l~L~~t~d~~~i~~~~~~~~~-L~Idr~~g~i~~~~~~~~~~~~~~~~~i~GilG~I~l~~~~YLivIt~~~~Vg~ 374 (828)
+++++++|+.||+|+|+|.|++.+. |.|||.+|.+++++....+-.......|+|++|.|+|..+.||+|||+++.+|.
T Consensus 1 ~~~~l~l~~~pe~~~~e~~dg~gd~~l~i~r~~~~~~~i~~~~~~v~~~~~~~i~gv~G~ikL~~~~ylivvt~~~~vg~ 80 (579)
T KOG1889|consen 1 IYENLKLYENPEQFVIEPADGGGDSCLTIDRVDGVMKVIDAVKKPVPSSVIRSIFGVLGMIKLLAGSYLIVVTEAESVGQ 80 (579)
T ss_pred CCcceEEEEccceEEEEecCCCCceEEEEeccCCceEeeccccccCcccceeeeeeeeeEEEEecCcEEEEEEehhhhcc
Confidence 4678999999999999998776554 999999999998765443322226789999999999999999999999999999
Q ss_pred eCCceEEEEEeEEEEecCCccccccchhhhhhHHHHHHHHhHhcCCceEEeecccccchhhhhhhcccCCCCCCccccCC
Q 003337 375 FLGFPVFRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYETDITLNLQRRCKLAEGWMSKPIWKQAD 454 (828)
Q Consensus 375 i~gh~Iy~I~~~~~ip~~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYFSytyDLT~slQr~~~~~~~~~~~~~~~~~d 454 (828)
+.||.||+|+++++||+... +++++|.+.|..|.+||+.++++++|||||+||||+|+||+++..++....++|+++|
T Consensus 81 ~~gh~i~~v~~~~iIp~k~~--~~~~~q~k~~~~~~~lL~~~lkt~~fyfSyt~dlT~slqrl~~~~~~~~~~~l~~~ad 158 (579)
T KOG1889|consen 81 FNGHVIYRITDFEIIPYKKT--NLTEEQIKMETEFSNLLSHVLKTGGFYFSYTYDLTNSLQRLHENADEGKALSLWRRAD 158 (579)
T ss_pred ccCcceEEEeeeeEEEeecC--CchHHHHHHHHHHHHHHHHHHhcCceEEEEEEccchHHHhhhhccccccccchhhhcc
Confidence 99999999999999999876 5667788888899999999999999999999999999999999888888888999999
Q ss_pred CcceecHHhhHHHHhcc------------------eeccCcceEEEEEeeeccccccccccccCCCCCCCcceeEeeeEE
Q 003337 455 PRFVWNRNLLEELIECK------------------LKLNDSPAVITLLSRRCNRRLGTRMWRRGANLEGDTANFIETEQL 516 (828)
Q Consensus 455 ~rF~WN~~l~~~l~~~~------------------~~i~~~~~~~~LISRRS~~raGTRy~~RGiD~~G~vANfVETEqI 516 (828)
+||+||.+|++.|++.. +.++++.+.++||||||+.||||||++||+|++||||||||||||
T Consensus 159 ~rFlwN~~ll~~~~~~~~~~~f~lpvi~Gf~~~~~~~i~~~tv~l~lIsRRs~~RaGtRyfrRG~D~~G~vaNfvETEQI 238 (579)
T KOG1889|consen 159 KRFLWNGYLLEDLIDNAKVDLFILPVIQGFIGSVDVGINGKTVDLTLISRRSIRRAGTRYFRRGSDEDGYVANFVETEQI 238 (579)
T ss_pred cceeecchhHHHHhcCccccchhhHHhhhhhheeeEeeccceEEEEEeehhhhhccceeEEecccCCcccccccceeeEE
Confidence 99999999999999874 557899999999999999999999999999999999999999999
Q ss_pred EEeCCeeEEEEEeecCCCcceeeeccCCCCCceeecCCCCcHHHHHHHHHHHHHhcCCceEeeCCCCCCchhhHHHHHHH
Q 003337 517 LETEGFKSSLLQVRGSIPLLWEQIVDLSYKPRLKIINHDQTPKVVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAA 596 (828)
Q Consensus 517 v~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~~~~~~~a~~kHF~~L~~~YG~i~~VNLl~~kg~E~~L~~~y~~ 596 (828)
+..++..+||||+|||||+||+|++||+|||.+.+...+++..||.+||++|++.||++++|||+|+||+|++|.++||+
T Consensus 239 v~~~~~~~SFvQ~RGSiP~~W~qv~nL~YkP~~~l~~~~~~~~~~~rhF~~~~~~YG~~v~VNLvnqKG~E~~l~~~ye~ 318 (579)
T KOG1889|consen 239 VEYNGHTTSFVQTRGSIPFFWEQVPNLRYKPKPVLVPPENALAAFGRHFDELRKKYGDVVAVNLVNQKGREGPLKEGYEK 318 (579)
T ss_pred EEecCcEEEEEEeccCccchHHhcCCCccCCceeecChHHHHHHHHHHHHHHHHHhCCEEEEEeecccCcccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC--CcccccchhhhhcCCccchHHHHHHHHHHHHhhcCeeeEcCCCceeeeeceEEeeeccccccchhHHHHHH
Q 003337 597 EMQKLPN--VRYVSFDFHHVCGTSNFDKLQVLYDQIQQEFDNQGYLLIDTEGNILEEQKGVIRSNCIDCLDRTNVTQSYL 674 (828)
Q Consensus 597 ~v~~l~~--i~y~~fDfh~~ck~~~~~~l~~L~~~i~~~l~~~g~f~~~~~g~~~~~Q~GV~RtNClDCLDRTNvvQs~i 674 (828)
.+.++++ |+|++||||+||++|+|+|+++|++++++.++++|||..+++|+.+..|+||||||||||||||||+|+++
T Consensus 319 ~~~~~~~~~irYv~FDFHkec~~m~wdrl~lll~~ie~~~~~~gy~~~~~~g~~~~~Q~gvvRTNCmDCLDRTNVvQs~l 398 (579)
T KOG1889|consen 319 VVRRLNNPPIRYVHFDFHKECGHMRWDRLSLLLEQIEQELEEFGYFLLDSNGKTVLEQTGVVRTNCMDCLDRTNVVQSML 398 (579)
T ss_pred HHHhcCCCCceEEEeehhhhccccchhhHHHHHHHHHHHHHhcCEEEEecCCceeeeecCeeeccchhhccchhHHHHHH
Confidence 9999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccCCcccccChhHHHHHHHHHHHhhHHHHHhhhCCcCccCCeEEeeccchhhhHHhHHHHHhHhhh
Q 003337 675 AQKSLSLQLQRIGILSCTKCISMFSEECGKFRTLWAEQGDEISIEYAGTYALKGDLVRYGKQTISGLIRDGMSSLSRYYL 754 (828)
Q Consensus 675 a~~~L~~qL~~lgi~~~~~~~~~~~~~~~~f~~lWadnGD~iS~~YaGT~Alktd~tr~Gkrt~~g~l~D~~~S~~Ryy~ 754 (828)
|+++|+.||+.+|++..++++++.+.|+..|+++||||||.||+|||||+||||||||+||||..|+++||+||++|||+
T Consensus 399 ar~~L~~qL~~~gVl~~~~~le~~~~f~~~fk~iWAdngD~iS~qYSGT~ALKtDFtR~G~RT~~Ga~~Dg~Ns~~RYyl 478 (579)
T KOG1889|consen 399 ARWSLQKQLRKLGVLHAGQKLEEADPFESIFKNLWADNGDYISIQYSGTGALKTDFTRTGKRTIVGALKDGWNSFRRYYL 478 (579)
T ss_pred HHHHHHHHHHhcCeeccccchhhcccHHHHHHHhhhcccchhhhhccCCcccccceeeccceeehhhhHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhhhhHHHhhccCcccCCCC--CCCCccc-chhH--------HH-------------HHHHHHHHHHHHHHHHHH
Q 003337 755 NNFQDGVRQDAMDLISGHYTVNRNS--PSPFQLN-GFES--------FS-------------QYLSSVVWAGVTAGVLAL 810 (828)
Q Consensus 755 NnF~Dg~rQd~idL~lG~~~~~~~~--~~p~~~~-~~~~--------~~-------------~~~~~~~~~~~~~~~~~~ 810 (828)
|||.||.||||||||||+|.|..+. .+|++.. .|.. ++ .+++.+||.++++++..+
T Consensus 479 NNf~DG~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~ 558 (579)
T KOG1889|consen 479 NNFADGTRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAV 558 (579)
T ss_pred hcccCccccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999776554 5676644 1111 11 678899999999999999
Q ss_pred HHhcCccccccCCCCCC
Q 003337 811 VKANGTQFCSRPRLCGL 827 (828)
Q Consensus 811 i~~~g~~~v~~P~l~~~ 827 (828)
|+.||.||||||||+.+
T Consensus 559 i~~~g~~fvnwPrl~~p 575 (579)
T KOG1889|consen 559 ILINGDQFVNWPRLVLP 575 (579)
T ss_pred heechHHhcCCccccCc
Confidence 99999999999999876
No 2
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-110 Score=933.96 Aligned_cols=425 Identities=37% Similarity=0.637 Sum_probs=385.0
Q ss_pred CCCceeeEEEEEEEEEecCceEEEEEeCeeeeeeeCCceEEEEEeEEEEecCCccccccchhhhhhHHHHH--HHHhHhc
Q 003337 341 SPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFLGFPVFRVTSMKFLHCNEALKFSNYQEKKDEVYFMN--LLKVVEA 418 (828)
Q Consensus 341 ~~~~~~~i~GilG~I~l~~~~YLivIt~~~~Vg~i~gh~Iy~I~~~~~ip~~~~~~~~~~~~~~~E~~~~~--llk~~~~ 418 (828)
......+++|++|+|.+....||++||+++.||.++||.||+|.+++|||++++.+.. +...||..+.+ -+|.+++
T Consensus 53 ~~~~~~~i~g~~Gli~l~~~~yl~~it~~s~v~~~~g~~IykI~~vdfi~l~~~~~d~--~~~~~~~~~~~~~~lk~Lls 130 (570)
T COG5329 53 SLSSAHKIYGVIGLIKLKGDIYLIVITGASLVGVIPGHSIYKILDVDFISLNNNKWDD--ELEEDEANYDKLSELKKLLS 130 (570)
T ss_pred hhccceeEEeEEEEEEecCcEEEEEEecceEEeeeCCcceEEEeeeEEEEccccccch--hhhhhhhhhhhhhhhhhhhc
Confidence 4455689999999999999999999999999999999999999999999998875432 12235566655 7788999
Q ss_pred CCceEEeecccccchhhhhhhcccCCCCCCccccCCCcceecHHhhHHHHhcc--------------------------e
Q 003337 419 TPGLYYSYETDITLNLQRRCKLAEGWMSKPIWKQADPRFVWNRNLLEELIECK--------------------------L 472 (828)
Q Consensus 419 ~~~fYFSytyDLT~slQr~~~~~~~~~~~~~~~~~d~rF~WN~~l~~~l~~~~--------------------------~ 472 (828)
++.|||||+||||+++|+... ....+.|+++|.+|+||.+|+++|+... +
T Consensus 131 ~gtFYfS~~~diTn~lQ~~~~----~~~~~~~~~~d~~f~wN~fl~~e~i~~r~~~~~~~k~~~~flt~vIrGf~~t~~~ 206 (570)
T COG5329 131 NGTFYFSYDFDITNSLQKNLS----EGLEASVDRADLIFMWNSFLLEEFINHRSKLSSLEKQFDNFLTTVIRGFAETVDI 206 (570)
T ss_pred CCcEEEecccchhhhhhhccc----cCccccccchhheeecchhhHHHHHhhcccCChhhhcccchheeeeeeeeeeEEE
Confidence 999999999999999998722 1335678899999999999999998865 2
Q ss_pred eccCcceEEEEEeeeccccccccccccCCCCCCCcceeEeeeEEEEeCCeeEEEEEeecCCCcceeeeccCCCCCceeec
Q 003337 473 KLNDSPAVITLLSRRCNRRLGTRMWRRGANLEGDTANFIETEQLLETEGFKSSLLQVRGSIPLLWEQIVDLSYKPRLKII 552 (828)
Q Consensus 473 ~i~~~~~~~~LISRRS~~raGTRy~~RGiD~~G~vANfVETEqIv~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~ 552 (828)
.+++..+.++||||||++||||||++||||++||||||||||||+.....++||||+|||||+||+| .++.|.|+|++.
T Consensus 207 ~~~~~~i~ltLISR~S~~raGtRy~~RGiDddGnvsnFVETE~Iv~~~~~~fSf~QvRGSIPifWeq-~~~l~~pkI~i~ 285 (570)
T COG5329 207 KVGGNTISLTLISRRSSERAGTRYLSRGIDDDGNVSNFVETEQIVTDSQYIFSFTQVRGSIPLFWEQ-SNLLYGPKIKVT 285 (570)
T ss_pred eecCceEEEEEEEeehhhcccceeeccccCCCCcccceeeeEEEEEecceEEEEEEecCceeeEEhh-hccccCCCeEEe
Confidence 3467889999999999999999999999999999999999999999999999999999999999999 678899999999
Q ss_pred CCCC-cHHHHHHHHHHHHHhcCCceEeeCCCCCCchhhHHHHHHHHHhhCCC--CcccccchhhhhcCCccchHHHHHHH
Q 003337 553 NHDQ-TPKVVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAAEMQKLPN--VRYVSFDFHHVCGTSNFDKLQVLYDQ 629 (828)
Q Consensus 553 ~~~~-~~~a~~kHF~~L~~~YG~i~~VNLl~~kg~E~~L~~~y~~~v~~l~~--i~y~~fDfh~~ck~~~~~~l~~L~~~ 629 (828)
++++ +..||++||++|.++||+|++|||++.||+|.+|.++|++++...+. ++|++||||++|+.|+|++++.|+..
T Consensus 286 ~s~~a~~~af~kHF~~L~~~YG~v~vvNLl~tK~~E~~L~~~ye~~l~~~~~~~i~~~~fdfh~e~~~~~~~~~~~Ll~~ 365 (570)
T COG5329 286 RSSEAAQSAFDKHFDKLREKYGDVYVVNLLKTKGYEAPLLELYEKHLDLSKKPKIHYTEFDFHKETSQDGFDDVKKLLYL 365 (570)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCEEEEEcccCCcchhHHHHHHHHHHhhCCCCCceeEEEeehhcccccccccHHHHHHH
Confidence 8654 78999999999999999999999999999999999999999997766 99999999999999999999999999
Q ss_pred HHHHHhhcCeeeEc-CCCceeeeeceEEeeeccccccchhHHHHHHHHHHHHHHHHHcCcccCCcccccChhHHHHHHHH
Q 003337 630 IQQEFDNQGYLLID-TEGNILEEQKGVIRSNCIDCLDRTNVTQSYLAQKSLSLQLQRIGILSCTKCISMFSEECGKFRTL 708 (828)
Q Consensus 630 i~~~l~~~g~f~~~-~~g~~~~~Q~GV~RtNClDCLDRTNvvQs~ia~~~L~~qL~~lgi~~~~~~~~~~~~~~~~f~~l 708 (828)
+++.+.++|||..| ++|..+++|+||||||||||||||||+|+.|| ++|.+|+...++..... ++|.+.+++|
T Consensus 366 i~~~l~~~gy~~~d~~~~~~~s~Q~GV~RtNClDCLDRTNviQ~~Is-r~~le~~~~~~~i~~~~-----~~fl~~~~~L 439 (570)
T COG5329 366 IEQDLLEFGYFAYDINEGKSISEQDGVFRTNCLDCLDRTNVIQSLIS-RVLLEQFRSEGVISDGY-----SPFLQIHREL 439 (570)
T ss_pred HHHHHHhcCceeccccCCceeeeecceEEecchhhcccchHHHHHHH-HHHHHHHHhhhhhcccc-----cHHHHHHHHH
Confidence 99999999999977 56889999999999999999999999999999 66666777776665432 2799999999
Q ss_pred HHHhhHHHHHhhhCCcCccCCeEEeeccchhhhHHhHHHHHhHhhhcccCchhhhhHHHhhccCcccCCC
Q 003337 709 WAEQGDEISIEYAGTYALKGDLVRYGKQTISGLIRDGMSSLSRYYLNNFQDGVRQDAMDLISGHYTVNRN 778 (828)
Q Consensus 709 WadnGD~iS~~YaGT~Alktd~tr~Gkrt~~g~l~D~~~S~~Ryy~NnF~Dg~rQd~idL~lG~~~~~~~ 778 (828)
|+||||+||++|+||+||||+|||+|++++.|+++|+.+|++|||+|||.|+.|||+|||+||.+.+...
T Consensus 440 WaDNgd~is~~YTGt~alks~fTr~g~~s~~gal~D~~~S~~R~y~nnf~D~~rQ~~idllLg~~~~~~~ 509 (570)
T COG5329 440 WADNGDAISRLYTGTGALKSSFTRRGRRSFAGALNDFIKSFSRYYINNFTDGQRQDAIDLLLGKFRPQEA 509 (570)
T ss_pred HhhchhHHHHHhcCCccccchhhhhcchhhhhhhhhhhhhhHHhhcccccchhhhhHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999965443
No 3
>KOG1890 consensus Phosphoinositide phosphatase SAC1 [Lipid transport and metabolism]
Probab=100.00 E-value=8.5e-107 Score=888.91 Aligned_cols=467 Identities=33% Similarity=0.580 Sum_probs=409.5
Q ss_pred hhhhcccceEEEEeCCCCCccEEEECCCCceeccCC--CCCCCCCCceeeEEEEEEEEEecCce--EEEEEeCeeeeeee
Q 003337 300 LELLEFKDQYVIKSVESPDQGFSIDRRDGNIEPLND--EACSGSPSQTSTIYGVAGTIRLLAGK--YVLVITSRKEAGTF 375 (828)
Q Consensus 300 l~L~~t~d~~~i~~~~~~~~~L~Idr~~g~i~~~~~--~~~~~~~~~~~~i~GilG~I~l~~~~--YLivIt~~~~Vg~i 375 (828)
|.++.+++.||++.. ..+|+.||.+|.+.+.++ +.......+...+.|++|.|.|.+.. +|++|.++..||.+
T Consensus 1 Meifqt~~hyIl~qg---erslw~~RR~g~~~~kp~~dL~~~dd~~c~G~veg~iGkIsl~~~~~~~L~~v~~~s~Vg~l 77 (949)
T KOG1890|consen 1 MEIFQTPTHYILEQG---ERSLWFDRRNGKVLEKPEEDLEILDDVVCCGNVEGLIGKISLDEQHEPFLFFVVDSSVVGCL 77 (949)
T ss_pred CceeecCceeeeecc---ceeeEEeccCCceeeccccchhhccCceEecceeeeEEEEeccccCCceEEEEEeeeeEEEe
Confidence 578999999999953 346999999999877543 22124566777899999999999876 99999999999999
Q ss_pred CC-ceEEEEEeEEEEecCCcc-------cc------------cc----------------------c------hhhhhhH
Q 003337 376 LG-FPVFRVTSMKFLHCNEAL-------KF------------SN----------------------Y------QEKKDEV 407 (828)
Q Consensus 376 ~g-h~Iy~I~~~~~ip~~~~~-------~~------------~~----------------------~------~~~~~E~ 407 (828)
.| |.||+|+++..+.+.... +| ++ . +....|+
T Consensus 78 ~g~H~v~ki~~i~~ls~~~pd~dl~~ckkhh~~~n~~~~i~Pss~~sKfl~kt~~~iksn~~a~n~kkVk~srEpr~ier 157 (949)
T KOG1890|consen 78 RGSHSVRKIERIIALSVKSPDTDLSVCKKHHSVSNNNNAITPSSGGSKFLKKTTEKIKSNFAAANTKKVKKSREPRHIER 157 (949)
T ss_pred cCCceeeeEEEEEEEecCCCCccchhhhhhccccCCCCcccCCCCcchHHHHHHHHHHhhccccchhhhhcccCcchhhH
Confidence 66 999999999999865410 00 00 0 0011255
Q ss_pred HHH-HHHHhHhcCCceEEeecccccchhhhhhhcccCCCCCCccccCCCcceecHHhhHHHHhcc---------------
Q 003337 408 YFM-NLLKVVEATPGLYYSYETDITLNLQRRCKLAEGWMSKPIWKQADPRFVWNRNLLEELIECK--------------- 471 (828)
Q Consensus 408 ~~~-~llk~~~~~~~fYFSytyDLT~slQr~~~~~~~~~~~~~~~~~d~rF~WN~~l~~~l~~~~--------------- 471 (828)
+++ +++|.+..+.+||||.+||+|+|.||......+ .-...|+|||||++|+.+|.+.+
T Consensus 158 rlleellK~F~ds~sFYfs~~~DvTns~Qr~~~~~re-----~~s~~ddrFFWNK~Mi~dL~e~~~~D~~wi~PiiQGfv 232 (949)
T KOG1890|consen 158 RLLEELLKLFNDSKSFYFSRSRDVTNSSQRYEFEKRE-----AHSTSDDRFFWNKRMIGDLGEAKISDKKWICPIIQGFV 232 (949)
T ss_pred HHHHHHHHHhccccceEEEeecccccHHhhhhhhhcc-----cccCccchhhhHHHHHhhHhhcCCCCccEeehhhhhhh
Confidence 665 488899999999999999999999997432222 12457999999999999998876
Q ss_pred ----eeccCc---ceEEEEEeeeccccccccccccCCCCCCCcceeEeeeEEEEeCCeeEEEEEeecCCCcceeeeccCC
Q 003337 472 ----LKLNDS---PAVITLLSRRCNRRLGTRMWRRGANLEGDTANFIETEQLLETEGFKSSLLQVRGSIPLLWEQIVDLS 544 (828)
Q Consensus 472 ----~~i~~~---~~~~~LISRRS~~raGTRy~~RGiD~~G~vANfVETEqIv~~~~~~~SfvQiRGSVPlfW~Q~~~l~ 544 (828)
+.+++. -++++||||||++|||+||-+||+|+.||||||||||||+...++..||||+|||||+||+|. +.+
T Consensus 233 q~e~lvi~de~~c~ftialiSRRSrhRAG~RYkRRGvDe~gNvANyVETEqil~~~~H~LSFvQ~RGSvPvfWSQ~-Gyk 311 (949)
T KOG1890|consen 233 QTEQLVITDEINCYFTIALISRRSRHRAGARYKRRGVDEAGNVANYVETEQILNIFEHELSFVQCRGSVPVFWSQR-GYK 311 (949)
T ss_pred hhheEEeccccceEEEEEeeechhhhhccchhhhcCcccccchhhhhhHHHHHHhhhceeeEEEeecccceeeccc-Ccc
Confidence 334433 389999999999999999999999999999999999999999999999999999999999997 799
Q ss_pred CCCceeecCC-CCcHHHHHHHHHHHHHhcCCceEeeCCCCCCchhhHHHHHHHHHhhCCC--CcccccchhhhhcCCccc
Q 003337 545 YKPRLKIINH-DQTPKVVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAAEMQKLPN--VRYVSFDFHHVCGTSNFD 621 (828)
Q Consensus 545 ~kP~i~i~~~-~~~~~a~~kHF~~L~~~YG~i~~VNLl~~kg~E~~L~~~y~~~v~~l~~--i~y~~fDfh~~ck~~~~~ 621 (828)
|.|++++.++ +++..+|..||.+++..||.+++|||++|+|.|+++++||.++|-++|+ +.|+.||||..|++|+|+
T Consensus 312 YrPpprldRsv~ET~~~F~~HF~~~l~~Y~~~vivnLVdQ~GrEk~igdayl~hvvk~nn~~ltyvsFDfH~hCRGm~Fe 391 (949)
T KOG1890|consen 312 YRPPPRLDRSVEETHGVFTEHFKRLLAHYDTLVIVNLVDQRGREKPIGDAYLEHVVKANNNDLTYVSFDFHQHCRGMNFE 391 (949)
T ss_pred cCCCccccchHHHHHHHHHHHHHHHHHhhCcEEEEEhhhhcCcccchHHHHHHHHHcccCCceEEEEeehHHhhCccchh
Confidence 9999999886 5789999999999999999999999999999999999999999999888 999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCeeeEcCCCceeeeeceEEeeeccccccchhHHHHHHHHHHHHHHHHHcCcccCCcccccChhH
Q 003337 622 KLQVLYDQIQQEFDNQGYLLIDTEGNILEEQKGVIRSNCIDCLDRTNVTQSYLAQKSLSLQLQRIGILSCTKCISMFSEE 701 (828)
Q Consensus 622 ~l~~L~~~i~~~l~~~g~f~~~~~g~~~~~Q~GV~RtNClDCLDRTNvvQs~ia~~~L~~qL~~lgi~~~~~~~~~~~~~ 701 (828)
+++-|++.+.+.+..+||.+.|..| +++.|+||||+|||||||||||||..|++.++++||++||++++-..+ ...+
T Consensus 392 nvqtLida~~~~~~~mgfcWvD~~G-vic~QkgvfRvNCmDCLDRTNvVQ~aI~~~V~eqQl~kLGi~pP~~p~--Pe~l 468 (949)
T KOG1890|consen 392 NVQTLIDAMEETLKTMGFCWVDKTG-VICSQKGVFRVNCMDCLDRTNVVQGAISLFVVEQQLQKLGIFPPLCPP--PEVL 468 (949)
T ss_pred hHHHHHHHHHHHHhhceeEEecccc-eeecccceEEeehhhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCCCC--hHHH
Confidence 9999999999999999999999888 899999999999999999999999999999999999999998764332 2357
Q ss_pred HHHHHHHHHHhhHHHHHhhhCCcCccCCeEEeeccchhhhHHhHHHHHhHhhhcccCchhhhhHHHhhccCcccCCCC
Q 003337 702 CGKFRTLWAEQGDEISIEYAGTYALKGDLVRYGKQTISGLIRDGMSSLSRYYLNNFQDGVRQDAMDLISGHYTVNRNS 779 (828)
Q Consensus 702 ~~~f~~lWadnGD~iS~~YaGT~Alktd~tr~Gkrt~~g~l~D~~~S~~Ryy~NnF~Dg~rQd~idL~lG~~~~~~~~ 779 (828)
.+.|+.|||+|||.||+|||||.|||+|+||||.|.++|.|+||+||+.|||.+.|.|.+||.+|||++|+- +.++.
T Consensus 469 ~~~~q~mWAnNGD~ISrQYAGTaALKGD~TRtGERKl~GvMKDG~NSAnRYYL~rfKDayRQa~Idlm~G~~-v~e~l 545 (949)
T KOG1890|consen 469 VQTMQTMWANNGDVISRQYAGTAALKGDVTRTGERKLMGVMKDGYNSANRYYLTRFKDAYRQAAIDLMTGQT-VAESL 545 (949)
T ss_pred HHHHHHHhhcCCceeehhhcchhhhcCcccccchHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHhcCCc-hhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998 44443
No 4
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-99 Score=862.47 Aligned_cols=481 Identities=29% Similarity=0.517 Sum_probs=414.6
Q ss_pred cchhhhhcccceEEEEeCCCCCcc---EEEECCCCceecc-CCCCC--------------------CCCCCceeeEEEEE
Q 003337 297 HDQLELLEFKDQYVIKSVESPDQG---FSIDRRDGNIEPL-NDEAC--------------------SGSPSQTSTIYGVA 352 (828)
Q Consensus 297 l~~l~L~~t~d~~~i~~~~~~~~~---L~Idr~~g~i~~~-~~~~~--------------------~~~~~~~~~i~Gil 352 (828)
++++.||||..+|++...++..+. |.|||.++. .++ .+.+. .+...++..+|||+
T Consensus 15 ~~k~~lyETrar~YlIGsn~s~t~yrVLkIDrt~p~-~Lni~ed~~~yt~~Ei~elL~~i~~g~~~tgGl~~~t~ayGIl 93 (868)
T KOG1888|consen 15 LQKFVLYETRARFYLIGSNNSETRYRVLKIDRTEPS-ELNISEDSVVYTSEEIRELLARISEGNRATGGLKKVTSAYGIL 93 (868)
T ss_pred eeEEEEEEecceEEEEeecCCCceEEEEEeccCCch-hhccCCCccccCHHHHHHHHHHHhcCCccCCceeeeeeeeeee
Confidence 578999999999999987765532 999999986 442 11110 13345788999999
Q ss_pred EEEEecCceEEEEEeCeeeeeeeCCceEEEEEeEEEEecCCccccccchhhhhhHHHHHHHHhHhcCCceEEeecccccc
Q 003337 353 GTIRLLAGKYVLVITSRKEAGTFLGFPVFRVTSMKFLHCNEALKFSNYQEKKDEVYFMNLLKVVEATPGLYYSYETDITL 432 (828)
Q Consensus 353 G~I~l~~~~YLivIt~~~~Vg~i~gh~Iy~I~~~~~ip~~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYFSytyDLT~ 432 (828)
|++++..++||++||+++.||.|+||.||+|.++++||+...... .+.++|++|+++++.++.++.|||||+||||+
T Consensus 94 GfvkFle~YYLlliTkr~~ia~iggH~VY~I~es~mI~I~~~~vq---~~~~~e~r~~r~fq~vDLt~~FYFSYSYditr 170 (868)
T KOG1888|consen 94 GFVKFLEGYYLLLITKRRQIADIGGHAVYTIDESQMIPIPNDTVQ---PNHANEARYLRYFQNVDLTKDFYFSYSYDITR 170 (868)
T ss_pred eEEEecCceEEEEEEcccccccccCceeEEEccceEEEccCCCcC---CCCccHHHHHHHHhhcccccceeEEeehhhhh
Confidence 999999999999999999999999999999999999999866422 23578999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCccc--cCCCcceecHHhhHHHHhcc------------------eeccCcceEEEEEeeeccccc
Q 003337 433 NLQRRCKLAEGWMSKPIWK--QADPRFVWNRNLLEELIECK------------------LKLNDSPAVITLLSRRCNRRL 492 (828)
Q Consensus 433 slQr~~~~~~~~~~~~~~~--~~d~rF~WN~~l~~~l~~~~------------------~~i~~~~~~~~LISRRS~~ra 492 (828)
|+|.+..... ...+.++ .+|.+||||.+|++|+.... +.+-|+.+.++||+|||++.|
T Consensus 171 slQ~N~~~~~--~~~~~~~~~~~~~~FVWN~~Ll~pir~~~~~~~W~v~lvhGf~~Q~~lsi~Gr~~~vtLiARRSr~fA 248 (868)
T KOG1888|consen 171 SLQKNILRSR--LGGPDYEKLEADEMFVWNSFLLQPIRSILLNTDWTVALVHGFFKQSPLSISGRDFYVTLIARRSRHFA 248 (868)
T ss_pred hhcccccccc--cCCcchhhhcccceeEehHhHhHHHHHhccchhHHHHHHhhhhccceehhcCceeEEEEEEecccccc
Confidence 9998643221 1122222 35778999999999987644 445788999999999999999
Q ss_pred cccccccCCCCCCCcceeEeeeEEEEeC------CeeEEEEEeecCCCcceeeec-cCCCCCceeecCCCCcHHHHHHHH
Q 003337 493 GTRMWRRGANLEGDTANFIETEQLLETE------GFKSSLLQVRGSIPLLWEQIV-DLSYKPRLKIINHDQTPKVVERHF 565 (828)
Q Consensus 493 GTRy~~RGiD~~G~vANfVETEqIv~~~------~~~~SfvQiRGSVPlfW~Q~~-~l~~kP~i~i~~~~~~~~a~~kHF 565 (828)
||||.+||+|..|+|||+|||||||+.. +.++||||.|||||+||+|.. .+..||+|.+...|+++++...||
T Consensus 249 GTRfLKRG~N~~G~VANeVETEQIV~d~~~~~~~~~~sS~VQ~RGSIPl~WsQd~S~~~~KP~I~l~~~DP~y~~a~lHF 328 (868)
T KOG1888|consen 249 GTRFLKRGANSCGDVANEVETEQIVSDDVPGFHAGRISSFVQMRGSIPLFWSQDASRMVPKPDIVLDKRDPFYETAALHF 328 (868)
T ss_pred cchHHhccCCCCCCcccceeeeeeEecCcCCCCccceeeeeeccccccceeccchhhcCCCCCeEEeccCCccchHHHHH
Confidence 9999999999999999999999999985 368999999999999999986 578999999999999999999999
Q ss_pred HHHHHhcCC-ceEeeCCCC---CCchhhHHHHHHHHHhhCCC-------CcccccchhhhhcCCccchHHHHHHHHHHHH
Q 003337 566 HDLLQRYGE-IVAVDLTDK---HGDEGQLSAAYAAEMQKLPN-------VRYVSFDFHHVCGTSNFDKLQVLYDQIQQEF 634 (828)
Q Consensus 566 ~~L~~~YG~-i~~VNLl~~---kg~E~~L~~~y~~~v~~l~~-------i~y~~fDfh~~ck~~~~~~l~~L~~~i~~~l 634 (828)
++|.++||+ |+|+|||+. +.+|..|.++|+++|..+|. ++|++||||+..|...-..|..|....+..+
T Consensus 329 ~~L~~RYG~PIiilNLIKt~ekr~~E~IL~~eF~~ai~yLNqflp~e~rl~~i~wD~hk~~Ks~~~nVle~L~~~a~~~v 408 (868)
T KOG1888|consen 329 DNLVQRYGNPIIILNLIKTNEKRPRESILREEFENAIDYLNQFLPPENRLKYIHWDMHKHSKSKGQNVLEVLEKVAESAV 408 (868)
T ss_pred HHHHHhcCCcEEEEEeeccccCCchhHHHHHHHHHHHHHHhccCCCcceeeeeechHHhhhccCcccHHHHHHHHHhhhH
Confidence 999999997 789999964 57999999999999999886 9999999999887654455677888888889
Q ss_pred hhcCeeeE-----------------cC-CC--ceeeeeceEEeeeccccccchhHHHHHHHHHHHHHHHHHcCcccCCcc
Q 003337 635 DNQGYLLI-----------------DT-EG--NILEEQKGVIRSNCIDCLDRTNVTQSYLAQKSLSLQLQRIGILSCTKC 694 (828)
Q Consensus 635 ~~~g~f~~-----------------~~-~g--~~~~~Q~GV~RtNClDCLDRTNvvQs~ia~~~L~~qL~~lgi~~~~~~ 694 (828)
...|+|.. |. .| ..-+.|+||+||||+||||||||+|+++|+.+|..||+.||+.+.+ .
T Consensus 409 ~~tG~f~~~~~~~~~~~~~~~~~~~dd~~g~~~~~rlQ~GIlRtNCiDCLDRTN~AQf~~Gk~ALg~QL~~LGi~D~p-~ 487 (868)
T KOG1888|consen 409 MLTGIFFNMPLRDSLKLSPSPHESADDIEGDVKPPRLQSGILRTNCIDCLDRTNVAQFAIGKAALGCQLHALGISDKP-N 487 (868)
T ss_pred hhhceeecccchhhhhcCCCcccccccccccccchhhcccceeccchhhcccccHHHHHHHHHHHHHHHHHccCccCc-c
Confidence 99999976 11 12 2346999999999999999999999999999999999999999765 4
Q ss_pred cccChhHHHHHHHHHHHhhHHHHHhhhCCcCccCCeEEeeccchhhhHHhHHHHHhHhhhcccCchhhhhHHHhhccCcc
Q 003337 695 ISMFSEECGKFRTLWAEQGDEISIEYAGTYALKGDLVRYGKQTISGLIRDGMSSLSRYYLNNFQDGVRQDAMDLISGHYT 774 (828)
Q Consensus 695 ~~~~~~~~~~f~~lWadnGD~iS~~YaGT~Alktd~tr~Gkrt~~g~l~D~~~S~~Ryy~NnF~Dg~rQd~idL~lG~~~ 774 (828)
++.+.+....+.+|+.+|||.++.||+||.|+++-+|+.+...+....+|.+.+++|||.|.|.|+.||||||||||.|.
T Consensus 488 lelDs~~v~~L~dLye~~GDtlAlQYgGS~lvh~v~tyrk~~~~s~~srd~~~TL~RyYsNaf~D~dkQdaINLFLG~f~ 567 (868)
T KOG1888|consen 488 LELDSDIVSLLEDLYEEHGDTLALQYGGSQLVHSVKTYRKTAQWSTQSRDFLQTLSRYYSNAFVDADKQDAINLFLGVFR 567 (868)
T ss_pred cccCcHHHHHHHHHHHHhhhHHHHHhchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccc
Confidence 56667888999999999999999999999999999998777788889999999999999999999999999999999999
Q ss_pred cCCCCCCCCc
Q 003337 775 VNRNSPSPFQ 784 (828)
Q Consensus 775 ~~~~~~~p~~ 784 (828)
|..+.|+-|.
T Consensus 568 P~~g~p~LWe 577 (868)
T KOG1888|consen 568 PSEGKPALWE 577 (868)
T ss_pred ccCCCCcccc
Confidence 8888765554
No 5
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-93 Score=821.16 Aligned_cols=415 Identities=33% Similarity=0.518 Sum_probs=361.3
Q ss_pred CCCCceeeEEEEEEEEEecCceEEEEEeCeeeeeeeCC-ceEEEEEeEEEEecCCcc--ccccchhhhhh-----HHHHH
Q 003337 340 GSPSQTSTIYGVAGTIRLLAGKYVLVITSRKEAGTFLG-FPVFRVTSMKFLHCNEAL--KFSNYQEKKDE-----VYFMN 411 (828)
Q Consensus 340 ~~~~~~~~i~GilG~I~l~~~~YLivIt~~~~Vg~i~g-h~Iy~I~~~~~ip~~~~~--~~~~~~~~~~E-----~~~~~ 411 (828)
....+...+||+||+++|.++.|+.||++...++.+.| ..|++|.+++|+.++... ..+-+....+| .+-+.
T Consensus 52 ~~~~k~~~~yG~LGll~l~~~~~~~vi~g~~~l~~V~~~~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s 131 (1080)
T KOG0566|consen 52 FLYSKSHDIYGILGLLRLNGGDFVAVISGVSFLAQVTGSESVGKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCS 131 (1080)
T ss_pred cccccceeeeeeeEEEEEcCCceEEEeccceEEEEecCCceeccccceeEEEeccchhhheecccCCCCccccccccchH
Confidence 35567889999999999999998877777776666533 556666666666655441 11000111112 13466
Q ss_pred HHHhHhcCCceEEeecccccchhhhhhhcccCCCCCCccccCCCcceecHHhhHHHHhcc--------------------
Q 003337 412 LLKVVEATPGLYYSYETDITLNLQRRCKLAEGWMSKPIWKQADPRFVWNRNLLEELIECK-------------------- 471 (828)
Q Consensus 412 llk~~~~~~~fYFSytyDLT~slQr~~~~~~~~~~~~~~~~~d~rF~WN~~l~~~l~~~~-------------------- 471 (828)
-|+.+++++.||||.+||||..+|++... .+..|.+|+||++|..+|+..+
T Consensus 132 ~LrkLLssGsFYfS~~fDlt~~~q~rg~~---------~d~~d~~f~WN~~L~~el~~~~s~~k~l~d~~~~Ll~~irG~ 202 (1080)
T KOG0566|consen 132 ELRKLLSSGSFYFSSDFDLTCFAQNRGDQ---------TDETDLRFFWNRFLHSELINYRSHLKQLLDCDGFLLTVIRGF 202 (1080)
T ss_pred HHHHHhhCCcEEEeeccchhhHHHhcCCC---------cccccceeechhHHHHHHHHhhhhhhhccccccHHHHhhhce
Confidence 78889999999999999999999987421 2345899999999999998865
Q ss_pred -----eeccCcceEEEEEeeeccccccccccccCCCCCCCcceeEeeeEEEEeCCeeEEEEEeecCCCcceeeeccCCCC
Q 003337 472 -----LKLNDSPAVITLLSRRCNRRLGTRMWRRGANLEGDTANFIETEQLLETEGFKSSLLQVRGSIPLLWEQIVDLSYK 546 (828)
Q Consensus 472 -----~~i~~~~~~~~LISRRS~~raGTRy~~RGiD~~G~vANfVETEqIv~~~~~~~SfvQiRGSVPlfW~Q~~~l~~k 546 (828)
+.++.+.+.++||||.||.|+||||+.||||++||||||||||||++.++.++||+||||||||||+|+...-+.
T Consensus 203 ve~~~iy~g~~~~~~~iISR~S~eragtrf~~rGidddG~VanFVETE~iv~~~~~v~Sf~QIRGSvPlFWEQ~g~~~~s 282 (1080)
T KOG0566|consen 203 VETRTIYVGANTARMTLISRLSCERAGTRFNVRGIDDDGNVANFVETEQIVYSDQTVFSFTQIRGSVPLFWEQPGVQVGS 282 (1080)
T ss_pred EEEEEEEeccceeeEEEEEeehhcccCceecccccCCccceeeeeeeEEEEEecCcEEEEEEeccceeeeEeccCccccc
Confidence 345788899999999999999999999999999999999999999999999999999999999999998667789
Q ss_pred CceeecCC-CCcHHHHHHHHHHHHHhcCCceEeeCCCCCCchhhHHHHHHHHHhhCCC---CcccccchhhhhcCCccch
Q 003337 547 PRLKIINH-DQTPKVVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAAEMQKLPN---VRYVSFDFHHVCGTSNFDK 622 (828)
Q Consensus 547 P~i~i~~~-~~~~~a~~kHF~~L~~~YG~i~~VNLl~~kg~E~~L~~~y~~~v~~l~~---i~y~~fDfh~~ck~~~~~~ 622 (828)
|+|++.+. +.++.||++||..|.++||.+++||||..|+.|..|+++|++++...+. |.++.||||.+|+..+++.
T Consensus 283 ~kv~itR~~easq~aFdrHf~~L~~~YG~v~IVNLLgtk~gE~~Ls~~fk~hl~~s~~~~dv~~t~fDyH~~~~~~~~~~ 362 (1080)
T KOG0566|consen 283 HKVKITRSFEASQPAFDRHFSKLREKYGPVYIVNLLGTKEGEESLSEAFKRHLKLSPIKPDVPLTNFDYHAEVSGGKFEA 362 (1080)
T ss_pred ceeEEeccchhhhHHHHHHHHHHHHhcCcEEEEEcccCcchHHHHHHHHHHHHhccCCCCCcceeEEeeccccccCCcch
Confidence 99999875 5678999999999999999999999999999999999999999986543 8899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCeeeEcCCCceeeeeceEEeeeccccccchhHHHHHHHHHHHHHHHHHcCcccCCcccccChhHH
Q 003337 623 LQVLYDQIQQEFDNQGYLLIDTEGNILEEQKGVIRSNCIDCLDRTNVTQSYLAQKSLSLQLQRIGILSCTKCISMFSEEC 702 (828)
Q Consensus 623 l~~L~~~i~~~l~~~g~f~~~~~g~~~~~Q~GV~RtNClDCLDRTNvvQs~ia~~~L~~qL~~lgi~~~~~~~~~~~~~~ 702 (828)
+..|+..+.+.+.++|||..+.++.+++.|+|||||||+|||||||+||+.|+..+|..||..+++..... ....|.
T Consensus 363 ~~kL~~~i~~~~~~~G~f~~~~~~~~~~~Q~GVfRtNcLDCLDRTN~vQ~~Isl~~~~l~le~l~l~~~~~---~~~~f~ 439 (1080)
T KOG0566|consen 363 LHKLLYLILQDILEFGFFYYDISEGLISEQDGVFRTNCLDCLDRTNVVQSLISLEVLRLQLEDLNLNEKQS---VVDRFL 439 (1080)
T ss_pred hHHHHHHHHhhHHhcCeeeeccccCceeeecceEEecchhhcccchHHHHHHHHHHHHHHHHHhhcccccc---cchhHH
Confidence 99999999999999999998865558999999999999999999999999999999999999999876543 345799
Q ss_pred HHHHHHHHHhhHHHHHhhhCCcCccCCeEEeeccchhhhHHhHHHHHhHhhhcccCchhhhhHHHhhccCc
Q 003337 703 GKFRTLWAEQGDEISIEYAGTYALKGDLVRYGKQTISGLIRDGMSSLSRYYLNNFQDGVRQDAMDLISGHY 773 (828)
Q Consensus 703 ~~f~~lWadnGD~iS~~YaGT~Alktd~tr~Gkrt~~g~l~D~~~S~~Ryy~NnF~Dg~rQd~idL~lG~~ 773 (828)
+.|+.||++|||+||+.||||||||+.++| |+|+|+..|+.|.|+|||.|+.||++|||+||.+
T Consensus 440 e~~~~lWs~NGd~iskiYTGtgAlk~s~tr-------G~L~D~skS~~R~y~nnf~D~~kQeaIdlLLg~l 503 (1080)
T KOG0566|consen 440 EIHRTLWSNNGDSLSKIYTGTGALKSSATR-------GKLKDASKSVTRTYQNNFMDKEKQEAIDLLLGRL 503 (1080)
T ss_pred HHHHHHHHhcchhhhhhhcccccccccccc-------cchhhhhHHHHHHHhccccchhhHHHHHHHHhcC
Confidence 999999999999999999999999999988 8899999999999999999999999999999977
No 6
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=100.00 E-value=2.5e-73 Score=623.60 Aligned_cols=275 Identities=40% Similarity=0.743 Sum_probs=193.7
Q ss_pred EEEEEEEEEecCceEEEEEeCeeeeeeeC-CceEEEEEeEEEEecCCcccccc------chhhhhhHHHHHHHHhHhcCC
Q 003337 348 IYGVAGTIRLLAGKYVLVITSRKEAGTFL-GFPVFRVTSMKFLHCNEALKFSN------YQEKKDEVYFMNLLKVVEATP 420 (828)
Q Consensus 348 i~GilG~I~l~~~~YLivIt~~~~Vg~i~-gh~Iy~I~~~~~ip~~~~~~~~~------~~~~~~E~~~~~llk~~~~~~ 420 (828)
|+||+|+|++.++.||+|||+++.||.++ +|+||+|+++++||+........ .++.++|.+++++|+.++.++
T Consensus 1 ~~GilG~i~l~~~~yL~vIt~~~~v~~i~~~h~Iy~I~~v~~i~l~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~ 80 (319)
T PF02383_consen 1 CFGILGIIRLLSGPYLVVITESELVGTIPGGHDIYRITKVEFIPLPSSSSSSSLLNSEQSEQSRDEQRYLSLLKKLLSSG 80 (319)
T ss_dssp --EEEEEEEETTEEEEEEEEEEEEEEEETT-EEEEEEEEEEEEES-TT---------------HHHHHHHHHHHHHHHH-
T ss_pred CceEEEEEEECCCcEEEEEEecEEEEEeCCCcEEEEEeEEEEEEcCCCccccccccccccccchHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999998 59999999999999987654332 235677889999999999999
Q ss_pred ceEEeecccccchhhhhhhcccC-----CCCCCccccCCCcceecHHhhHHHHhcc-------------------eecc-
Q 003337 421 GLYYSYETDITLNLQRRCKLAEG-----WMSKPIWKQADPRFVWNRNLLEELIECK-------------------LKLN- 475 (828)
Q Consensus 421 ~fYFSytyDLT~slQr~~~~~~~-----~~~~~~~~~~d~rF~WN~~l~~~l~~~~-------------------~~i~- 475 (828)
+|||||+||||+++|++...... ....++|+.+|+||+||++|+++|++.+ +.++
T Consensus 81 ~fYfS~~~DLT~slQ~~~~~~~~~~~~~~~~~~~~~~~~~~F~WN~~l~~~~~~~~~~~~~~~~~iiqG~v~~~~~~~~~ 160 (319)
T PF02383_consen 81 SFYFSYTYDLTNSLQRQFENNSQSSTESSSSHSLWDRADDRFFWNRHLLKPFIEFGPDLDRWCLPIIQGFVESRQIEINS 160 (319)
T ss_dssp --EE-SSS-TTS-HHHHHHH-S------------GGGS-TTT-TTTGGGHHHHHHHGGGGGG----BSSEEEEEEEEET-
T ss_pred CEEEECCCChhHhhcccccccccccccccccccccccCCCccCchHHHHHHHHhhCCCcccEEEEEEeeeEEEEEeeeec
Confidence 99999999999999998764321 1234789999999999999999997643 2345
Q ss_pred CcceEEEEEeeeccccccccccccCCCCCCCcceeEeeeEEEE-e-C--CeeEEEEEeecCCCcceeeeccCCCCCceee
Q 003337 476 DSPAVITLLSRRCNRRLGTRMWRRGANLEGDTANFIETEQLLE-T-E--GFKSSLLQVRGSIPLLWEQIVDLSYKPRLKI 551 (828)
Q Consensus 476 ~~~~~~~LISRRS~~raGTRy~~RGiD~~G~vANfVETEqIv~-~-~--~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i 551 (828)
++.++++||||||++||||||++||||++||||||||||||++ . + +.++||||+||||||||+|.++++++|++.|
T Consensus 161 ~~~~~~~lIsRrS~~r~GtRy~~RGid~~G~vANfVEtEqiv~~~~~~~~~~~SfvqiRGSVPl~W~Q~~~~~~~p~i~i 240 (319)
T PF02383_consen 161 GKNFQLTLISRRSCRRAGTRYNRRGIDDDGNVANFVETEQIVYIYNNQSGHIFSFVQIRGSVPLFWSQPPNLKYKPPIKI 240 (319)
T ss_dssp TEEEEEEEEEEE-----SSS--SSSB-TTS--S-EEEEEEEEEEE-T--EEEEEEEEEEE---SBS-----SSS------
T ss_pred CceEEEEEEEeEeccccccccccccccccCccceeEEEEEEEEEcCCCCccEEEEeEecCCCCceeEcCCCCCCCCCeEE
Confidence 7889999999999999999999999999999999999999999 5 4 7899999999999999999989999999999
Q ss_pred cC-CCCcHHHHHHHHHHHHHhcCCceEeeCCCCCCchhhHHHHHHHHHhhCC-------CCcccccchhhhhcCCccch
Q 003337 552 IN-HDQTPKVVERHFHDLLQRYGEIVAVDLTDKHGDEGQLSAAYAAEMQKLP-------NVRYVSFDFHHVCGTSNFDK 622 (828)
Q Consensus 552 ~~-~~~~~~a~~kHF~~L~~~YG~i~~VNLl~~kg~E~~L~~~y~~~v~~l~-------~i~y~~fDfh~~ck~~~~~~ 622 (828)
.+ .+++..||++||++|.++||+|+|||||+++++|+.|+++|+++++.++ +|+|++||||++||+|+|+|
T Consensus 241 ~~~~~~~~~af~kHf~~L~~~Y~~i~~VNLl~~~~~E~~L~~~y~~~~~~~~~~~~~~~~i~y~~fDfh~~~k~~~~~n 319 (319)
T PF02383_consen 241 SRSSEENQPAFKKHFDELLKRYGPIIIVNLLDKKGSEGKLSEAYEEAVKKLNQKSPNNDKIKYIWFDFHKECKNMKYEN 319 (319)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSEEEEEEE---SS---HHHHHHHHHHHHH-------TTEEEEEE---SSTTTHHHH-
T ss_pred EeccchhHHHHHHHHHHHHHhcCceEEEEcccCCCCHHHHHHHHHHHHHHHhccccCcCCCcEEEeChhHHhcCCCCCC
Confidence 84 5678899999999999999999999999999999999999999999882 39999999999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.92 E-value=6.4e-25 Score=225.44 Aligned_cols=143 Identities=34% Similarity=0.697 Sum_probs=128.2
Q ss_pred eeEeechhhHHHHHhhhccccccc---cccEEEeecCCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccCCCCC
Q 003337 104 LQFVGISRNIGASVFSHLKSVPEL---CCSVKVGVVDDPDRTALTQAWKSWMEEHIQATGKIPPGNESGNNTWVRQPPKK 180 (828)
Q Consensus 104 lq~ig~sr~~~~Slk~h~~~~P~~---c~~~kv~~vd~p~r~~L~~~~~~w~~e~~~~~G~vP~GN~~~~~~W~~~~~~~ 180 (828)
++|+=+.|+ ..+.++|++ .++..++++.|+++++|++.++.|... + +
T Consensus 49 ~~F~~V~~d------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~--------~--~-------------- 98 (204)
T PTZ00062 49 LEFYVVNLA------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGWAQK--------G--S-------------- 98 (204)
T ss_pred cEEEEEccc------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHHHcCC--------C--C--------------
Confidence 555555555 899999997 779999999999999999999998631 0 0
Q ss_pred CCCCCcCCCCCCCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHH
Q 003337 181 KKPDLRLTPGHNVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETL 260 (828)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L 260 (828)
++++.++++++++++||||||||||++|+||||+++|++|+++|++|.++||+++ ++++++|
T Consensus 99 ---------------~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l 160 (204)
T PTZ00062 99 ---------------SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED---PDLREEL 160 (204)
T ss_pred ---------------HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHH
Confidence 1247889999999999999999999999999999999999999999999999876 6899999
Q ss_pred HHHhCCCCcceEEECCeEEEechhhhhHHhhccc
Q 003337 261 KKYSNWPTFPQIFVNGELVGGCDILSSMYEKGRF 294 (828)
Q Consensus 261 ~~~sg~~TvPqIfI~Ge~IGG~del~~l~~sG~l 294 (828)
++++||+|+|||||||++|||+|++++|+++|.|
T Consensus 161 ~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L 194 (204)
T PTZ00062 161 KVYSNWPTYPQLYVNGELIGGHDIIKELYESNSL 194 (204)
T ss_pred HHHhCCCCCCeEEECCEEEcChHHHHHHHHcCCh
Confidence 9999999999999999999999999999999954
No 8
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-25 Score=199.10 Aligned_cols=94 Identities=52% Similarity=1.004 Sum_probs=90.7
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCC-CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQG-VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~g-v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
+..++|++.+++||||+||||||+.|.|+|+.+++++|..+| ++|..+||..+ +++|+.|+++++|||+||+||+|
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeECC
Confidence 567899999999999999999999999999999999999999 89999999998 79999999999999999999999
Q ss_pred eEEEechhhhhHHhhccc
Q 003337 277 ELVGGCDILSSMYEKGRF 294 (828)
Q Consensus 277 e~IGG~del~~l~~sG~l 294 (828)
++|||+|++.+|+++|+|
T Consensus 80 EfvGG~DIv~Em~q~GEL 97 (105)
T COG0278 80 EFVGGCDIVREMYQSGEL 97 (105)
T ss_pred EEeccHHHHHHHHHcchH
Confidence 999999999999999954
No 9
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-25 Score=226.93 Aligned_cols=171 Identities=36% Similarity=0.600 Sum_probs=142.2
Q ss_pred EEEEEcCCCCeeEeechhhHHHHHhhhccccccccccEEEeecCCCChHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCC
Q 003337 94 VYAVYDKNDELQFVGISRNIGASVFSHLKSVPELCCSVKVGVVDDPDRTALTQAWKSWMEEHIQATGK--IPPGNESGNN 171 (828)
Q Consensus 94 vyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P~~c~~~kv~~vd~p~r~~L~~~~~~w~~e~~~~~G~--vP~GN~~~~~ 171 (828)
.+|.|.+-...+|-++|+.+.++..-|.... |.+.||+++.+++++.+..++..|... ++ .++++.
T Consensus 47 ~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~---~~~~~v~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---- 114 (227)
T KOG0911|consen 47 KNAQFLKLEAEEFPEISNLIAVEAVPYFVFF---FLGEKVDRLSGADPPFLVSKVEKLAES-----GSASLGMGLS---- 114 (227)
T ss_pred hhheeeeehhhhhhHHHHHHHHhcCceeeee---ecchhhhhhhccCcHHHHHHHHHhhhh-----cccccCCCCC----
Confidence 6788888888888888887776654444332 999999999999999999999999864 32 222221
Q ss_pred ccccCCCCCCCCCCcCCCCCCCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 172 TWVRQPPKKKKPDLRLTPGHNVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 172 ~W~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
+..+ ++.....+. +.++++++++.+||||||||||+.|.|+|+++++.+|.++|++|..+||..|
T Consensus 115 -----------~~~~--e~~~~~~~~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D- 179 (227)
T KOG0911|consen 115 -----------TTIR--ETQTTNETD-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD- 179 (227)
T ss_pred -----------cchh--cccccchhh-HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC-
Confidence 1111 111112224 8899999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhhcc
Q 003337 252 YNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKGR 293 (828)
Q Consensus 252 ~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~sG~ 293 (828)
+++|+.+|+++.|||+||+||||+++||+|++.+|+++|+
T Consensus 180 --eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ge 219 (227)
T KOG0911|consen 180 --EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGE 219 (227)
T ss_pred --HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhccc
Confidence 5999999999999999999999999999999999999996
No 10
>PRK10824 glutaredoxin-4; Provisional
Probab=99.91 E-value=1e-24 Score=204.33 Aligned_cols=97 Identities=43% Similarity=0.869 Sum_probs=91.0
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCe
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGE 277 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge 277 (828)
.+++++++++++++|||||||||+.|+||||++|+++|++.|++|.++||+.+ ++++++|++++||+|||||||||+
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECCE
Confidence 47789999999999999999999999999999999999999999999999876 689999999999999999999999
Q ss_pred EEEechhhhhHHhhcc-cccc
Q 003337 278 LVGGCDILSSMYEKGR-FKLH 297 (828)
Q Consensus 278 ~IGG~del~~l~~sG~-lkLl 297 (828)
+|||+|++.+|+++|. .+++
T Consensus 80 ~IGG~ddl~~l~~~G~L~~lL 100 (115)
T PRK10824 80 LVGGCDIVIEMYQRGELQQLI 100 (115)
T ss_pred EEcChHHHHHHHHCCCHHHHH
Confidence 9999999999999994 3344
No 11
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.88 E-value=1.5e-22 Score=184.96 Aligned_cols=92 Identities=47% Similarity=0.954 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEE
Q 003337 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELV 279 (828)
Q Consensus 200 ~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~I 279 (828)
.+++++++++++||||+||+++.|+||||.+||++|+++|++|+++||+++ ++.+++|++++|++|+|||||||++|
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 367899999999999999999999999999999999999999999999765 68999999999999999999999999
Q ss_pred EechhhhhHHhhccc
Q 003337 280 GGCDILSSMYEKGRF 294 (828)
Q Consensus 280 GG~del~~l~~sG~l 294 (828)
||+||+.+|+++|.+
T Consensus 79 GG~ddl~~l~~~g~L 93 (97)
T TIGR00365 79 GGCDIIMEMYQSGEL 93 (97)
T ss_pred eChHHHHHHHHCcCh
Confidence 999999999999954
No 12
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.87 E-value=4.3e-22 Score=179.41 Aligned_cols=90 Identities=57% Similarity=1.090 Sum_probs=85.5
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEec
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGC 282 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~ 282 (828)
+++++++++||||+||||++|+||||.+|+++|+++|++|+++||+.+ ++++++|.+.+|++|+|+|||||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999999999999999999999999999999999999876 68999999999999999999999999999
Q ss_pred hhhhhHHhhcccc
Q 003337 283 DILSSMYEKGRFK 295 (828)
Q Consensus 283 del~~l~~sG~lk 295 (828)
|++.+|+++|.|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999763
No 13
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.84 E-value=6.3e-21 Score=174.95 Aligned_cols=86 Identities=26% Similarity=0.475 Sum_probs=81.5
Q ss_pred HHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEech
Q 003337 204 DKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCD 283 (828)
Q Consensus 204 ~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~d 283 (828)
++++++++|+||+| ++||||++||++|+++|++|+++||+.++++.++++++.+++|++|+|||||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 57899999999999 8999999999999999999999999988777888999999999999999999999999999
Q ss_pred hhhhHHhhccc
Q 003337 284 ILSSMYEKGRF 294 (828)
Q Consensus 284 el~~l~~sG~l 294 (828)
|+.+|+++|.|
T Consensus 77 dl~~l~~~G~L 87 (99)
T TIGR02189 77 NVMALHISGSL 87 (99)
T ss_pred HHHHHHHcCCH
Confidence 99999999943
No 14
>PHA03050 glutaredoxin; Provisional
Probab=99.83 E-value=1.8e-20 Score=174.57 Aligned_cols=96 Identities=26% Similarity=0.430 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCC---CeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGV---DYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 200 ~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv---~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
++.+++++++++|+||++ ++||||.+|+++|+++++ +|+++||+..+.+.+++++|++.+|++|||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 578999999999999999 899999999999999999 799999998666789999999999999999999999
Q ss_pred eEEEechhhhhHHhhc-cccccchh
Q 003337 277 ELVGGCDILSSMYEKG-RFKLHDQL 300 (828)
Q Consensus 277 e~IGG~del~~l~~sG-~lkLl~~l 300 (828)
++|||+||+.+|+++| +.+++...
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~ 102 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSI 102 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHc
Confidence 9999999999999999 43444443
No 15
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.7e-20 Score=168.31 Aligned_cols=90 Identities=28% Similarity=0.555 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeE
Q 003337 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGEL 278 (828)
Q Consensus 199 ~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~ 278 (828)
.++.++++++++|||||+| ++||||+++|.+|.+.++.+..+++|.++++.+++++|.+.+|.+|+|+|||+|++
T Consensus 3 ~~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred HHHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 4567999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhhhHHhhcc
Q 003337 279 VGGCDILSSMYEKGR 293 (828)
Q Consensus 279 IGG~del~~l~~sG~ 293 (828)
|||+++++++|++|.
T Consensus 78 iGG~~dl~~lh~~G~ 92 (104)
T KOG1752|consen 78 IGGASDLMALHKSGE 92 (104)
T ss_pred EcCHHHHHHHHHcCC
Confidence 999999999999994
No 16
>PRK10638 glutaredoxin 3; Provisional
Probab=99.64 E-value=6.3e-16 Score=136.94 Aligned_cols=76 Identities=30% Similarity=0.626 Sum_probs=71.7
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+|++|++ ++||||++|+.+|+++|++|+++||+.+ ++.++++.+.+|..++|+||+||++|||+|++.++++
T Consensus 3 ~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 6999999 8999999999999999999999999876 5788899999999999999999999999999999999
Q ss_pred hccc
Q 003337 291 KGRF 294 (828)
Q Consensus 291 sG~l 294 (828)
+|.+
T Consensus 75 ~g~l 78 (83)
T PRK10638 75 RGGL 78 (83)
T ss_pred cCCH
Confidence 9964
No 17
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.64 E-value=5.8e-16 Score=135.43 Aligned_cols=76 Identities=32% Similarity=0.642 Sum_probs=71.3
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEK 291 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~s 291 (828)
|+||++ ++||+|.+|+++|+++|++|+.+||+.+ ++.++++.+.+|+.++|+|||||++|||++++.+++++
T Consensus 1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 579999 8999999999999999999999999876 58889999999999999999999999999999999999
Q ss_pred cccc
Q 003337 292 GRFK 295 (828)
Q Consensus 292 G~lk 295 (828)
|.++
T Consensus 73 g~l~ 76 (79)
T TIGR02181 73 GKLD 76 (79)
T ss_pred CChh
Confidence 9654
No 18
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.63 E-value=9.7e-16 Score=132.21 Aligned_cols=74 Identities=39% Similarity=0.695 Sum_probs=69.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCC-CcceEEECCeEEEechhhhhHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWP-TFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~-TvPqIfI~Ge~IGG~del~~l~ 289 (828)
+|+||++ ++||+|.+|+++|++++++|+++||+.+ ++.++++.+.+|+. ++|+|||||++|||++++.+|+
T Consensus 1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 5899999 8999999999999999999999999876 67888898888888 9999999999999999999999
Q ss_pred hhc
Q 003337 290 EKG 292 (828)
Q Consensus 290 ~sG 292 (828)
++|
T Consensus 73 ~~g 75 (75)
T cd03418 73 RKG 75 (75)
T ss_pred hCc
Confidence 987
No 19
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9e-16 Score=135.49 Aligned_cols=79 Identities=39% Similarity=0.730 Sum_probs=70.3
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
+.|+||++ ++||||++||++|+++|++|+++++++++. .+.++.+++.+|.+|+|||||||++|||++++.+++
T Consensus 1 ~~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 1 ANVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CCEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 36899999 899999999999999999999999988742 366677777779999999999999999999999999
Q ss_pred hhccc
Q 003337 290 EKGRF 294 (828)
Q Consensus 290 ~sG~l 294 (828)
+.|.+
T Consensus 75 ~~~~l 79 (80)
T COG0695 75 AKGKL 79 (80)
T ss_pred hhccC
Confidence 88854
No 20
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.61 E-value=1.8e-15 Score=130.59 Aligned_cols=72 Identities=26% Similarity=0.367 Sum_probs=67.8
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+|+||++ ++||+|++|+++|+++|++|+.+||+.+ ++.++++++++|+.++|+|||||++|||+|||.+|++
T Consensus 2 ~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 2 RVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred EEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 6899999 8999999999999999999999999876 5889999999999999999999999999999999853
No 21
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.60 E-value=2.6e-15 Score=131.51 Aligned_cols=79 Identities=27% Similarity=0.600 Sum_probs=74.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
||++|++ ++||+|.+++++|++.+++|+.++++.+++..++++++++++|++++|+||++|++|||++++.++.+
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 6899999 89999999999999999999999998876667888999999999999999999999999999999999
Q ss_pred hccc
Q 003337 291 KGRF 294 (828)
Q Consensus 291 sG~l 294 (828)
+|.|
T Consensus 76 ~g~l 79 (82)
T cd03419 76 SGKL 79 (82)
T ss_pred cCCc
Confidence 9965
No 22
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.58 E-value=4.4e-15 Score=130.33 Aligned_cols=78 Identities=32% Similarity=0.656 Sum_probs=73.0
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCC--eEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVD--YESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~--y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
|++|++ ++||+|++++.+|++++++ |+.++|+.+++..++++++++.+|.+++|+|||||++|||++++.+++
T Consensus 1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 689999 8999999999999999999 999999887767888999999999999999999999999999999999
Q ss_pred hhccc
Q 003337 290 EKGRF 294 (828)
Q Consensus 290 ~sG~l 294 (828)
++|.|
T Consensus 76 ~~g~l 80 (84)
T TIGR02180 76 KSGKL 80 (84)
T ss_pred HcCCh
Confidence 99954
No 23
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.58 E-value=4.6e-15 Score=130.33 Aligned_cols=75 Identities=32% Similarity=0.600 Sum_probs=66.6
Q ss_pred HhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhh
Q 003337 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDIL 285 (828)
Q Consensus 206 li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del 285 (828)
+-++++|+||++ ++||+|++|+++|+++|++|+++||+.++ + .+++++.+|+.++|+|||||++|||++++
T Consensus 4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~---~-~~~~~~~~g~~~vP~i~i~g~~igG~~~l 74 (79)
T TIGR02190 4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDA---R-GRSLRAVTGATTVPQVFIGGKLIGGSDEL 74 (79)
T ss_pred cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCCh---H-HHHHHHHHCCCCcCeEEECCEEEcCHHHH
Confidence 346789999999 99999999999999999999999998763 2 34677789999999999999999999999
Q ss_pred hhHH
Q 003337 286 SSMY 289 (828)
Q Consensus 286 ~~l~ 289 (828)
.++.
T Consensus 75 ~~~l 78 (79)
T TIGR02190 75 EAYL 78 (79)
T ss_pred HHHh
Confidence 9864
No 24
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.56 E-value=9.7e-15 Score=125.62 Aligned_cols=70 Identities=31% Similarity=0.622 Sum_probs=64.1
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
+|+||++ ++||+|.+|+++|+++|++|+++||+.+. ..++++..+|..++|+|||||++|||++|+.++.
T Consensus 2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~----~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDI----TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCCh----hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 6999999 89999999999999999999999998763 3567788899999999999999999999999874
No 25
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.56 E-value=9e-15 Score=143.21 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=73.0
Q ss_pred cEEEEEecCCCCC------CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCC----CCcceEEECCeEEE
Q 003337 211 KVVAFIKGSRSAP------MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNW----PTFPQIFVNGELVG 280 (828)
Q Consensus 211 ~VvifsKgt~~~~------~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~----~TvPqIfI~Ge~IG 280 (828)
+|+||+. + .||+|.+|+++|++++|+|+++||+.+ ++.+++|+++++. +|+|||||+|++||
T Consensus 1 ~VvlYtt-----sl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IG 72 (147)
T cd03031 1 RVVLYTT-----SLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLG 72 (147)
T ss_pred CEEEEEc-----CCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEe
Confidence 5899999 5 699999999999999999999999887 6889999988765 99999999999999
Q ss_pred echhhhhHHhhc-cccccchh
Q 003337 281 GCDILSSMYEKG-RFKLHDQL 300 (828)
Q Consensus 281 G~del~~l~~sG-~lkLl~~l 300 (828)
|+||+++|+++| +.++++.+
T Consensus 73 G~del~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 73 GAEEVLRLNESGELRKLLKGI 93 (147)
T ss_pred cHHHHHHHHHcCCHHHHHhhc
Confidence 999999999999 44455444
No 26
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.52 E-value=3.9e-14 Score=126.61 Aligned_cols=73 Identities=27% Similarity=0.499 Sum_probs=64.2
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCC-----CCeEEEEccCccCcHHHHHHHHHHhCC--CCcceEEECCeEEEechh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQG-----VDYESVDVLDEEYNNGLRETLKKYSNW--PTFPQIFVNGELVGGCDI 284 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~g-----v~y~~idI~~~~~~~~~~~~L~~~sg~--~TvPqIfI~Ge~IGG~de 284 (828)
|+||++ ++||||.+|+++|++++ ++|+.+|++.+ ...++++.+.+|+ .|+|||||||++|||+||
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~---~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~d 73 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE---GISKADLEKTVGKPVETVPQIFVDEKHVGGCTD 73 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCcCeEEECCEEecCHHH
Confidence 789999 89999999999999984 67999999754 3446678888887 899999999999999999
Q ss_pred hhhHHhhc
Q 003337 285 LSSMYEKG 292 (828)
Q Consensus 285 l~~l~~sG 292 (828)
|.++++++
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 99998876
No 27
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.52 E-value=4.7e-14 Score=125.42 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=66.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHh-----CCCCeEEEEccCccCcHHHHHHHHHHhCC--CCcceEEECCeEEEech
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILES-----QGVDYESVDVLDEEYNNGLRETLKKYSNW--PTFPQIFVNGELVGGCD 283 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~-----~gv~y~~idI~~~~~~~~~~~~L~~~sg~--~TvPqIfI~Ge~IGG~d 283 (828)
+|+||++ ++||+|++|+++|++ .+++|+.+||+.+ +..++++.+.+|+ .++|||||||++|||++
T Consensus 2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~---~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~ 73 (85)
T PRK11200 2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAE---GISKADLEKTVGKPVETVPQIFVDQKHIGGCT 73 (85)
T ss_pred EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCC---hHHHHHHHHHHCCCCCcCCEEEECCEEEcCHH
Confidence 6899999 899999999999999 8999999999876 3456778888876 89999999999999999
Q ss_pred hhhhHHhhc
Q 003337 284 ILSSMYEKG 292 (828)
Q Consensus 284 el~~l~~sG 292 (828)
|+.++++..
T Consensus 74 ~~~~~~~~~ 82 (85)
T PRK11200 74 DFEAYVKEN 82 (85)
T ss_pred HHHHHHHHh
Confidence 999998754
No 28
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.46 E-value=2.5e-13 Score=114.36 Aligned_cols=71 Identities=46% Similarity=0.926 Sum_probs=66.8
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
||++|++ ++||+|++++.+|++++++|+.+|++.+ ++.++.+++.+|.+++|++|+||++|||++++++++
T Consensus 1 ~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSK-----STCPYCKRAKRLLESLGIEFEEIDILED---GELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCcEEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 6899999 8999999999999999999999999877 468899999999999999999999999999999986
No 29
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.37 E-value=1.3e-12 Score=118.36 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=66.9
Q ss_pred EEEEEecCCCCCCC-CcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCC----CCcceEEECCeEEEechhhh
Q 003337 212 VVAFIKGSRSAPMC-GFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNW----PTFPQIFVNGELVGGCDILS 286 (828)
Q Consensus 212 VvifsKgt~~~~~C-~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~----~TvPqIfI~Ge~IGG~del~ 286 (828)
|+||..+..-...+ ..|.+++.+|+.++|+|+++||+.+ ++.+++|.+.++. +|+|||||||++|||+||+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 67777743222222 2488999999999999999999887 6999999998764 99999999999999999999
Q ss_pred hHHhhccc
Q 003337 287 SMYEKGRF 294 (828)
Q Consensus 287 ~l~~sG~l 294 (828)
+|+++|.+
T Consensus 79 ~l~e~g~L 86 (92)
T cd03030 79 EAKENNTL 86 (92)
T ss_pred HHHhCCCH
Confidence 99999954
No 30
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.37 E-value=1.5e-12 Score=108.05 Aligned_cols=60 Identities=38% Similarity=0.747 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEE
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELV 279 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~I 279 (828)
|++|++ ++||+|.+++++|+++|++|+++||+.+ ++.++++++.+|..++|+|||||++|
T Consensus 1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDED---EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999 8999999999999999999999999887 58999999999999999999999987
No 31
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.34 E-value=1.4e-12 Score=148.26 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=69.9
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHH-----HHhCCCCcceEEECCeEEEechhh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLK-----KYSNWPTFPQIFVNGELVGGCDIL 285 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~-----~~sg~~TvPqIfI~Ge~IGG~del 285 (828)
+|+||++ ++||+|++||++|+++|++|+++||++++...++.+++. ..+|..|+|||||||++|||+|++
T Consensus 3 ~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 3 EVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred cEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 6999999 899999999999999999999999987643334434433 347899999999999999999999
Q ss_pred hhHHhhc-cccccchhhhhc
Q 003337 286 SSMYEKG-RFKLHDQLELLE 304 (828)
Q Consensus 286 ~~l~~sG-~lkLl~~l~L~~ 304 (828)
.+ ++| +..+...|.|..
T Consensus 78 ~~--~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 78 MA--RAGEVIARVKGSSLTT 95 (410)
T ss_pred HH--HhCCHHHHhcCCcccc
Confidence 87 778 444555555543
No 32
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.20 E-value=3.6e-11 Score=103.66 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=57.0
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCe-EEEechh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGE-LVGGCDI 284 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge-~IGG~de 284 (828)
|+||++ ++||+|++|+++|+++|++|+++||+.+ ++.++.+++ .|..++|+|+++|+ ++||++.
T Consensus 1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 579999 8999999999999999999999999876 578888876 48899999999775 9999974
No 33
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.18 E-value=7.7e-11 Score=104.37 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~de 284 (828)
+|+||++ ++||+|.+++++|+++|++|+++||+.+ ++..++++. .|..++|+|+++|+.++||+.
T Consensus 2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 6899999 8999999999999999999999999876 577777876 589999999999999999964
No 34
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.84 E-value=1.4e-08 Score=85.96 Aligned_cols=66 Identities=27% Similarity=0.451 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~de 284 (828)
+|.+|+. ++||+|++++.+|++.+++|..+|++++ ++..+++.+..|..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTT-----PWCPPCKKAKEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcC-----CCChhHHHHHHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 4789998 8999999999999999999999999876 4667777778899999999999999999754
No 35
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.77 E-value=3.2e-08 Score=83.54 Aligned_cols=66 Identities=26% Similarity=0.531 Sum_probs=59.5
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~de 284 (828)
++++|+. ++||+|.+++.+|++.+++|..++++.+ ++..+.+.+..+..++|.|+++|+.++|++.
T Consensus 1 ~v~l~~~-----~~c~~c~~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTK-----PDCPYCKATKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeC-----CCChhHHHHHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 5789998 8999999999999999999999999775 5677788888888999999999999999876
No 36
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.49 E-value=4.6e-07 Score=77.84 Aligned_cols=63 Identities=19% Similarity=0.470 Sum_probs=53.6
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHh-CCCCcceEEE-CCeEEEe
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS-NWPTFPQIFV-NGELVGG 281 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~s-g~~TvPqIfI-~Ge~IGG 281 (828)
+|++|.. ++||+|++++.+|++.+++|+.+|++++ ++..+.+.+++ +..++|++++ ||+.+..
T Consensus 1 ~v~ly~~-----~~C~~C~~~~~~L~~~~~~~~~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~ 65 (77)
T TIGR02200 1 TITVYGT-----TWCGYCAQLMRTLDKLGAAYEWVDIEED---EGAADRVVSVNNGNMTVPTVKFADGSFLTN 65 (77)
T ss_pred CEEEEEC-----CCChhHHHHHHHHHHcCCceEEEeCcCC---HhHHHHHHHHhCCCceeCEEEECCCeEecC
Confidence 4789998 8999999999999999999999999876 46677888887 8899999976 5666643
No 37
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.46 E-value=4.1e-07 Score=76.73 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=48.7
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEe
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGG 281 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG 281 (828)
.|++|++ ++||+|++++.+|++. ++++..+|++++ ++ +.+..|..++|+++++|++++.
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~---~~----l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEF---PD----LADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC---Hh----HHHHcCCcccCEEEECCEEEEe
Confidence 4789999 8999999999999875 688888998765 23 4556788899999999998863
No 38
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.29 E-value=2.1e-06 Score=78.94 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCCCC----CcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhC---------CCCcceEEECCe
Q 003337 211 KVVAFIKGSRSAPMC----GFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSN---------WPTFPQIFVNGE 277 (828)
Q Consensus 211 ~VvifsKgt~~~~~C----~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg---------~~TvPqIfI~Ge 277 (828)
+|.||..++ ++- ..|.++..+|+.++|+|+.+||..+ ++.|+.|.+..| .+-.||||+||+
T Consensus 2 ~I~vy~ss~---sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~ 75 (99)
T PF04908_consen 2 VIKVYISSI---SGSREIKKRQQRVLMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDE 75 (99)
T ss_dssp SEEEEE-SS----SSHHHHHHHHHHHHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTE
T ss_pred EEEEEEecc---cCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCE
Confidence 466777642 222 2478899999999999999999886 689999998773 344589999999
Q ss_pred EEEechhhhhHHhhcc
Q 003337 278 LVGGCDILSSMYEKGR 293 (828)
Q Consensus 278 ~IGG~del~~l~~sG~ 293 (828)
++|+++++.++.++|.
T Consensus 76 Y~Gdye~f~ea~E~~~ 91 (99)
T PF04908_consen 76 YCGDYEDFEEANENGE 91 (99)
T ss_dssp EEEEHHHHHHHHCTT-
T ss_pred EEeeHHHHHHHHhhCH
Confidence 9999999999999885
No 39
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8.9e-07 Score=93.56 Aligned_cols=90 Identities=28% Similarity=0.414 Sum_probs=71.2
Q ss_pred cCcEEEEEecCCCC-CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhC----CCCcceEEECCeEEEech
Q 003337 209 ENKVVAFIKGSRSA-PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSN----WPTFPQIFVNGELVGGCD 283 (828)
Q Consensus 209 ~~~VvifsKgt~~~-~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg----~~TvPqIfI~Ge~IGG~d 283 (828)
++.||+|.-+-+-- ..--.|..+..||+..+|.|++.||..| .+.+++|+++.| ..+.|+|||+|.+|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 46899998731100 0134699999999999999999999988 577777777664 478999999999999999
Q ss_pred hhhhHHhhc-cccccchhh
Q 003337 284 ILSSMYEKG-RFKLHDQLE 301 (828)
Q Consensus 284 el~~l~~sG-~lkLl~~l~ 301 (828)
++++|++.| +.++++.+.
T Consensus 207 eV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 207 EVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred HhhhhhhcchHHHHHhcCC
Confidence 999999999 444555554
No 40
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.08 E-value=1.9e-05 Score=68.86 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--CCeEEEechhhhhHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--NGELVGGCDILSSMY 289 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~Ge~IGG~del~~l~ 289 (828)
+.+|+. +.||+|.+++.+|+++|++|+.++++.+ ....+++.+.++..++|.+.. +|..+.+.+.+.+..
T Consensus 2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 568888 8999999999999999999999999654 334566777888889999976 367888888887765
Q ss_pred h
Q 003337 290 E 290 (828)
Q Consensus 290 ~ 290 (828)
+
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 4
No 41
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.08 E-value=1.5e-05 Score=65.70 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=56.8
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
.+|.. +.||+|.+++.+|+.+|++|+.++++..+.... ++++.++..++|.+.++|+.+++...+.+.
T Consensus 2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 47777 789999999999999999999999876542222 577788899999999999999988877664
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.92 E-value=4.3e-05 Score=65.17 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhhHHh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSSMYE 290 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~l~~ 290 (828)
.+|.. +.||||.+++-+|..+|++|+.+.++..+ .. ...+.++..++|++.++ |..+++...+.+..+
T Consensus 2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~---~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDD---EA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCc---hH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 36666 78999999999999999999999887542 11 12345677899999997 899999999887654
No 43
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=97.91 E-value=5e-05 Score=65.75 Aligned_cols=70 Identities=26% Similarity=0.466 Sum_probs=55.9
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC----CeEEEechhhh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN----GELVGGCDILS 286 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~----Ge~IGG~del~ 286 (828)
++.+|.. +.||+|++++.+|.++|++|+.++++.. .+..++ ..+..++|++.++ |..+.....+.
T Consensus 1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~~-----~~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNPV-----SRKEIK-WSSYKKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCch-----hHHHHH-HhCCCccCEEEECCCCCccEEEcHHHHH
Confidence 4789988 8899999999999999999999998543 133343 4788899999987 77887877777
Q ss_pred hHHhh
Q 003337 287 SMYEK 291 (828)
Q Consensus 287 ~l~~s 291 (828)
+..+.
T Consensus 70 ~yL~~ 74 (77)
T cd03040 70 STLKT 74 (77)
T ss_pred HHHHH
Confidence 76553
No 44
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.69 E-value=0.00013 Score=65.98 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 199 ~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
.+++++++-+.-.+.+|.. ++|++|..++.++++. ++++..+|+++. .++.+..|-.++|.++
T Consensus 3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-------~e~a~~~~V~~vPt~v 70 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-------QDEVEERGIMSVPAIF 70 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-------HHHHHHcCCccCCEEE
Confidence 4677887666667889988 7899999888887665 688999998654 2334456778999999
Q ss_pred ECCeEEE
Q 003337 274 VNGELVG 280 (828)
Q Consensus 274 I~Ge~IG 280 (828)
+||+.++
T Consensus 71 idG~~~~ 77 (89)
T cd03026 71 LNGELFG 77 (89)
T ss_pred ECCEEEE
Confidence 9998774
No 45
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.60 E-value=5.4e-05 Score=71.08 Aligned_cols=44 Identities=32% Similarity=0.614 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKY 263 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~ 263 (828)
|.||++ ++|++|++|+++|+++|++|+++|+..+. ..+++|.++
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~---~~~~el~~~ 44 (111)
T cd03036 1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEP---PSKEELKKW 44 (111)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCc---ccHHHHHHH
Confidence 478999 89999999999999999999999998764 334444443
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.59 E-value=0.00019 Score=61.37 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=52.0
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSS 287 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~ 287 (828)
++|+. ++||+|.+++.+|+++|++|+.++++.... .+.+++.+...++|.+..+ |..+.....+.+
T Consensus 2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~----~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKNK----PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCCC----CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 57777 789999999999999999999998876421 2456677888999999986 877765555443
No 47
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.55 E-value=0.00023 Score=60.56 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=54.0
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
++|+. +.||+|++++.+|+..|++|+.++++.... ..++++.....++|.+..+|..+.....+.+..+
T Consensus 2 ~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 2 TLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDNP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred EEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCCC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 57877 789999999999999999999998875422 2345566777899999888887777666666543
No 48
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.50 E-value=0.00031 Score=62.99 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=56.0
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhhH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSSM 288 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~l 288 (828)
.+.+|.. +.||+|.+++.+|..+|++|+.++++... ..+.+.+.+...++|.+.++ |..+.....+.++
T Consensus 18 ~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~----~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 18 IIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD----KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred cEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC----CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 4889988 78999999999999999999999887542 12446677888899999998 7877776666554
No 49
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.49 E-value=0.0016 Score=67.95 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=77.0
Q ss_pred hhHHHHHhhhcccccccc---ccEEEe-ecCC-CChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccCCCCCCCCCC
Q 003337 111 RNIGASVFSHLKSVPELC---CSVKVG-VVDD-PDRTALTQAWKSWMEEHIQATGKIPPGNESGNNTWVRQPPKKKKPDL 185 (828)
Q Consensus 111 r~~~~Slk~h~~~~P~~c---~~~kv~-~vd~-p~r~~L~~~~~~w~~e~~~~~G~vP~GN~~~~~~W~~~~~~~~~~~~ 185 (828)
.+-.+.-++++.++|++. .+..+. +..| |++.+| ..|+++.+...| ++
T Consensus 65 ~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l----~~~i~~~~~~~~---~~-------------------- 117 (215)
T TIGR02187 65 EDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEF----AALIEDIVRVSQ---GE-------------------- 117 (215)
T ss_pred ccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHH----HHHHHHHHHhcC---CC--------------------
Confidence 567889999999999983 455553 5544 455444 455554332111 00
Q ss_pred cCCCCCCCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHH
Q 003337 186 RLTPGHNVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETL 260 (828)
Q Consensus 186 ~l~~~~~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L 260 (828)
..++.+..+.++++-+.-.|++|+. +|||+|+.++.++++. .+.+..+|++.. + ++
T Consensus 118 -------~~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~---~----~~ 178 (215)
T TIGR02187 118 -------PGLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANEN---P----DL 178 (215)
T ss_pred -------CCCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC---H----HH
Confidence 0233455666666433445566877 8999999999998864 355666676554 2 34
Q ss_pred HHHhCCCCcceEEECCe
Q 003337 261 KKYSNWPTFPQIFVNGE 277 (828)
Q Consensus 261 ~~~sg~~TvPqIfI~Ge 277 (828)
.+..|-.++|.++++++
T Consensus 179 ~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 179 AEKYGVMSVPKIVINKG 195 (215)
T ss_pred HHHhCCccCCEEEEecC
Confidence 44568889999999754
No 50
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.44 E-value=0.00056 Score=59.37 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=41.0
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHh----CC--CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCe
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILES----QG--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGE 277 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~----~g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge 277 (828)
.|++|.. +||++|++++..|++ .+ +.+..+|++++ ++ +.+..|-+++|.++++|+
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~---~~----~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN---PQ----KAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC---HH----HHHHcCCccCCEEEECCE
Confidence 4789998 899999999999875 34 45566666544 22 223467889999999997
No 51
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.39 E-value=0.00028 Score=65.29 Aligned_cols=45 Identities=33% Similarity=0.602 Sum_probs=36.4
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS 264 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~s 264 (828)
|+||++ ++|++|++|+++|+++|++|+++|+.++. ..+++|.++.
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~---~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEP---PTKEELKELL 45 (105)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCC---CCHHHHHHHH
Confidence 479999 89999999999999999999999997753 3344444444
No 52
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.39 E-value=0.00042 Score=59.96 Aligned_cols=69 Identities=29% Similarity=0.340 Sum_probs=58.9
Q ss_pred EEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhh
Q 003337 214 AFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEK 291 (828)
Q Consensus 214 ifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~s 291 (828)
+|.. ++||||.++.-+|+.+|++|+.++++..+. ...+.+.....++|.+..||..+.+...+.+..++
T Consensus 1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 4666 799999999999999999999999986532 56677888899999999999999998888877654
No 53
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.27 E-value=0.00043 Score=67.05 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKY 263 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~ 263 (828)
|.||++ ++|++|++|+++|+++|++|+.+|+.++. ..+++|.+.
T Consensus 2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~---~~~~eL~~~ 45 (131)
T PRK01655 2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSP---LTIDEIKQI 45 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCCh---hhHHHHHHH
Confidence 789999 99999999999999999999999998763 444555443
No 54
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.26 E-value=0.0007 Score=57.39 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhhh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILSS 287 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~~ 287 (828)
.+|.. +.||+|++++-+|+.+|++|+.++++..+ +....+.+.+.+...++|.+.+ ||..+.....+.+
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAA-GEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeeccc-CccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence 47777 78999999999999999999998886431 1122345677788889999987 5666655555544
No 55
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.22 E-value=0.0011 Score=56.62 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=53.8
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
.+|.. +.||+|++++-+|++.|++|+.++++..+ +....+++.+.+...++|.+..+|..+-....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMK-GEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCcc-CCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 47777 89999999999999999999999886421 123446677777778999998888766655555544
No 56
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.20 E-value=0.0017 Score=57.47 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhC----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQ----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
++++|+| ++|+-|..|+++|.+. +++++.+||+++ ++ +.+..+ ..+|++.++|
T Consensus 1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d---~~----l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDED---PE----LFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT---HH----HHHHSC-TSTSEEEETT
T ss_pred CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCC---HH----HHHHhc-CCCCEEEEcC
Confidence 4899999 9999999999999965 456889999876 33 555666 4899999999
No 57
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.06 E-value=0.0022 Score=54.37 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
.+|.. +.||+|.+++-+|+.+|++|+.++++..+ +....+.+.+.+...++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILK-GETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCC-cccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46766 88999999999999999999999886421 122345566677778999999999887766655543
No 58
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.03 E-value=0.0028 Score=59.57 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=45.7
Q ss_pred HHH-HHHHHhhcCcEEEE-EecCCCCCCCCcHHHHHHHHHhCC-----CCeEEEEccCccCcHHHHHHHHHHhCCCCcce
Q 003337 199 LEE-LIDKLVKENKVVAF-IKGSRSAPMCGFSQKVIGILESQG-----VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ 271 (828)
Q Consensus 199 ~~~-~l~~li~~~~Vvif-sKgt~~~~~C~~C~~ak~lL~~~g-----v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq 271 (828)
+++ ..+++.+..++++| +. +|||+|+.++.+|++.. +++..+|++.. + ++.+..+-.++|.
T Consensus 11 ~~~~~~~~l~~~~~vvv~f~a-----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~---~----~l~~~~~v~~vPt 78 (113)
T cd02975 11 LKEEFFKEMKNPVDLVVFSSK-----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDED---K----EKAEKYGVERVPT 78 (113)
T ss_pred HHHHHHHHhCCCeEEEEEeCC-----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC---H----HHHHHcCCCcCCE
Confidence 444 34556666667766 44 89999999999997653 46777787654 2 4555678899999
Q ss_pred EEE
Q 003337 272 IFV 274 (828)
Q Consensus 272 IfI 274 (828)
+++
T Consensus 79 ~~i 81 (113)
T cd02975 79 TIF 81 (113)
T ss_pred EEE
Confidence 988
No 59
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.03 E-value=0.00099 Score=63.05 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=35.5
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKK 262 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~ 262 (828)
|.||+. ++|++|++|+++|+++|++|+.+|+.++. ..+++|.+
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~---~~~~el~~ 43 (117)
T TIGR01617 1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDG---PTREELLD 43 (117)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCCh---hhHHHHHH
Confidence 468988 89999999999999999999999998763 44444443
No 60
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.99 E-value=0.0012 Score=62.41 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=32.2
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
+.||.. ++|++|++|+++|+++|++|+.+|+.++.
T Consensus 2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 679998 89999999999999999999999997763
No 61
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.91 E-value=0.002 Score=62.45 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=32.8
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
|+||+. |+|+.|++|+++|+++|++|+.+|+..+.
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 789999 89999999999999999999999998764
No 62
>PHA02125 thioredoxin-like protein
Probab=96.88 E-value=0.0028 Score=55.03 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEE
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELV 279 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~I 279 (828)
|++|+. +||+.|++++.+|++. ++..++|+.++ ..++.+..+-.++|.+. +|+.+
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~--~~~~~~vd~~~-----~~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANV--EYTYVDVDTDE-----GVELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHH--hheEEeeeCCC-----CHHHHHHcCCceeCeEE-CCEEE
Confidence 788888 8999999999999865 45566666542 12445556778999876 77654
No 63
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.85 E-value=0.0038 Score=54.47 Aligned_cols=49 Identities=31% Similarity=0.384 Sum_probs=38.8
Q ss_pred CCCCcHHHH----HHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEE
Q 003337 223 PMCGFSQKV----IGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELV 279 (828)
Q Consensus 223 ~~C~~C~~a----k~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~I 279 (828)
+|||.|+.+ .+++++.+.+++.++|++. ++ ..+ .|-.++|.+++||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---NE----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---HH----HHH-cCCCcCCEEEECCEEE
Confidence 499999999 6688889999999999743 22 222 5889999999999755
No 64
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.85 E-value=0.0023 Score=62.11 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=32.6
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
+.||+. ++|+.|++|+++|+++|++|+++|+..+.
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 679988 89999999999999999999999998765
No 65
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.81 E-value=0.0029 Score=54.07 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.||+|.+++.+|+.+|++|+.++++... .+...++|.+..+|+.+.+...+.+..+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 47999999999999999999999986531 4556689999999999999888777654
No 66
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.79 E-value=0.0055 Score=55.74 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=57.8
Q ss_pred EEEEEecCCC---CCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 212 VVAFIKGSRS---APMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 212 VvifsKgt~~---~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
+-+|.|.++. ...||||+++.-.|.++|++|+.++|+... .+ +.+.+++-...+|.+..+|..+...+.+.++
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~-~p---~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eY 81 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKR-KP---EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEF 81 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCC-CC---HHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence 4456665433 245999999999999999999999997653 22 3356666667899998889989888888887
Q ss_pred Hhh
Q 003337 289 YEK 291 (828)
Q Consensus 289 ~~s 291 (828)
.++
T Consensus 82 Lde 84 (91)
T cd03061 82 LEE 84 (91)
T ss_pred HHH
Confidence 654
No 67
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.73 E-value=0.0028 Score=59.02 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccC-cHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEY-NNGLRETLK 261 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~-~~~~~~~L~ 261 (828)
|+||.. |+|+.|++|+++|+++|++|+.+|+.+++- ..++++.+.
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 478988 899999999999999999999999987642 233444443
No 68
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.66 E-value=0.014 Score=55.84 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=45.4
Q ss_pred HHHHhh-cCc-EEEEEecCCCCCCCCcHHHHHHHH----HhCCCCeEEEEccCcc-----CcHHHHHHHHHH---hCCCC
Q 003337 203 IDKLVK-ENK-VVAFIKGSRSAPMCGFSQKVIGIL----ESQGVDYESVDVLDEE-----YNNGLRETLKKY---SNWPT 268 (828)
Q Consensus 203 l~~li~-~~~-VvifsKgt~~~~~C~~C~~ak~lL----~~~gv~y~~idI~~~~-----~~~~~~~~L~~~---sg~~T 268 (828)
+++.++ ... ++.|+. +|||+|+++.-.| ++.++++-.+|++.+. ...++.+..+++ ++-..
T Consensus 16 ~~~~i~~~~~~iv~f~~-----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 16 ALEALDKKETATFFIGR-----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred HHHHHHcCCcEEEEEEC-----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 444444 445 455656 8999999976665 4456778899998542 112333333332 23445
Q ss_pred cceE--EECCeEEEec
Q 003337 269 FPQI--FVNGELVGGC 282 (828)
Q Consensus 269 vPqI--fI~Ge~IGG~ 282 (828)
+|.+ |-+|+.++..
T Consensus 91 ~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 91 TPTFVHITDGKQVSVR 106 (122)
T ss_pred CCEEEEEeCCeEEEEE
Confidence 8988 4589877655
No 69
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.39 E-value=0.014 Score=50.00 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.+|.. +.|++|.++.-+|+..|++|+.+.++... ++...+.+++.....++|.+..+|..+.....+.+...
T Consensus 2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTK-GEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccc-cccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 467877 78999999999999999999998876532 11233456677888899999888888877777666543
No 70
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.36 E-value=0.0041 Score=73.41 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred CCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCC-----CCeEEEEccCccCcHHHHHHHHHHhCCC
Q 003337 193 VQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQG-----VDYESVDVLDEEYNNGLRETLKKYSNWP 267 (828)
Q Consensus 193 ~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~g-----v~y~~idI~~~~~~~~~~~~L~~~sg~~ 267 (828)
..++++..++++++-+...+.+|.. +.||||.+|++.+.+.. |..+.+|.. + .+.+.+..+..
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~------~-~~~~~~~~~v~ 169 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGA------L-FQDEVEALGIQ 169 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEch------h-CHHHHHhcCCc
Confidence 3456778888888877778999999 88999999998887754 334444432 2 23344445667
Q ss_pred CcceEEECCeEEEe
Q 003337 268 TFPQIFVNGELVGG 281 (828)
Q Consensus 268 TvPqIfI~Ge~IGG 281 (828)
+||.+||||+.++.
T Consensus 170 ~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 170 GVPAVFLNGEEFHN 183 (515)
T ss_pred ccCEEEECCcEEEe
Confidence 99999999987643
No 71
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.36 E-value=0.0089 Score=70.59 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCC
Q 003337 194 QLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPT 268 (828)
Q Consensus 194 ~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~T 268 (828)
.++++..++|+++-+...+.+|.. +.||||.++++.+.+. .|..+.+|... .+.+.+..+..+
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-------~~~~~~~~~v~~ 169 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-------FQDEVEARNIMA 169 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-------CHhHHHhcCCcc
Confidence 456778888988877778999999 8899999999888765 34455555422 233444557779
Q ss_pred cceEEECCeEEE
Q 003337 269 FPQIFVNGELVG 280 (828)
Q Consensus 269 vPqIfI~Ge~IG 280 (828)
||.+||||+.++
T Consensus 170 VP~~~i~~~~~~ 181 (517)
T PRK15317 170 VPTVFLNGEEFG 181 (517)
T ss_pred cCEEEECCcEEE
Confidence 999999998664
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.32 E-value=0.02 Score=49.88 Aligned_cols=49 Identities=22% Similarity=0.577 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHH----HHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEE
Q 003337 223 PMCGFSQKVIGI----LESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELV 279 (828)
Q Consensus 223 ~~C~~C~~ak~l----L~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~I 279 (828)
++||+|.++.++ +++.+++++.+|+ .+ .+.+ ...|-.++|.++|||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~------~~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-ED------FEEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TT------HHHH-HHTT-SSSSEEEETTEEE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cC------HHHH-HHcCCCCCCEEEECCEEE
Confidence 469999977764 4567888888887 32 2344 457889999999999853
No 73
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.29 E-value=0.0079 Score=56.86 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=36.5
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc-CcHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE-YNNGLRETLK 261 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~-~~~~~~~~L~ 261 (828)
++||+. |.|+.|++|+++|+++|++|+.+|+.++. ...++++.+.
T Consensus 2 i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 2 IIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 689999 89999999999999999999999998764 2234444444
No 74
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.28 E-value=0.015 Score=49.76 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhC-CCCcceEEECCeEEEechhhhhHHh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSN-WPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg-~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
.+|.- +.||+|.++.-+|+..|++|+.++++.... ....++... ..++|.+..+|..+.....+.+..+
T Consensus 2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 46655 789999999999999999999988765321 123445554 4799999888887777777666543
No 75
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.21 E-value=0.015 Score=50.32 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=53.1
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
.+|.. +.|++|.++.-+|+++|++|+.++++... +......+.+.+...++|.+..||..+.....+.++
T Consensus 2 ~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 2 VLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPL-SEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred EEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCc-CccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 46666 78999999999999999999999876432 112234577788888999998888877666665544
No 76
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.09 E-value=0.025 Score=48.59 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=55.4
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
|+.+|.. +.|+.|.++.-+|++.|++|+.+.++.+ ...+.++..+...++|.+..||..+.....+.+...
T Consensus 1 ~~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 3567766 6799999999999999999999988642 234456666777899999999988877777766543
No 77
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.07 E-value=0.017 Score=52.72 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHHHHhhcCc-EEEEEecCCCCCCCCcHHHHHHHH-------HhC--CCCeEEEEccCccCcHHHHHHHHHHhCCCCcce
Q 003337 202 LIDKLVKENK-VVAFIKGSRSAPMCGFSQKVIGIL-------ESQ--GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ 271 (828)
Q Consensus 202 ~l~~li~~~~-VvifsKgt~~~~~C~~C~~ak~lL-------~~~--gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq 271 (828)
.+++++++++ |+|+-.+ +||++|+++...+ +.. ++.+-.+|++.++ .....+.+..+..++|.
T Consensus 3 ~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~~~~~i~~~Pt 75 (104)
T cd02953 3 ALAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND---PEITALLKRFGVFGPPT 75 (104)
T ss_pred HHHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC---HHHHHHHHHcCCCCCCE
Confidence 3556666654 4433332 8999999987543 111 4555566665442 22345555567889998
Q ss_pred EEE
Q 003337 272 IFV 274 (828)
Q Consensus 272 IfI 274 (828)
+++
T Consensus 76 i~~ 78 (104)
T cd02953 76 YLF 78 (104)
T ss_pred EEE
Confidence 865
No 78
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.04 E-value=0.039 Score=49.92 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=40.3
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHh------CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--CCeEEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILES------QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--NGELVG 280 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~------~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~Ge~IG 280 (828)
.+|+++..+ +||+.|+.+...|++ .++.+..+|++.+ ++ +.+..+..++|.+++ +|+.++
T Consensus 14 ~~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~---~~----l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 14 RLILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED---QE----IAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred CeEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC---HH----HHHHCCCeeccEEEEEECCeEEE
Confidence 455544442 899999999998876 3456777777654 33 334456788998855 777653
No 79
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.01 E-value=0.0072 Score=51.70 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhhhHHhh
Q 003337 224 MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILSSMYEK 291 (828)
Q Consensus 224 ~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~~l~~s 291 (828)
.||||+|+.-+|+.+|++|+..-+.....+....+.+.++++..++|.+.. +|+.++....+.++.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 499999999999999999998766331111122256778899999999998 89988888888776553
No 80
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.027 Score=48.86 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=48.4
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHH------H-----HhCCCCcceEEEC-C
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLK------K-----YSNWPTFPQIFVN-G 276 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~------~-----~sg~~TvPqIfI~-G 276 (828)
++| ++|.. ..||.|..+++.|++.+++|++++|... .+.+++.|+ + -.|.-.+|.+.++ |
T Consensus 2 skp-~lfgs-----n~Cpdca~a~eyl~rl~v~yd~VeIt~S--m~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~ 73 (85)
T COG4545 2 SKP-KLFGS-----NLCPDCAPAVEYLERLNVDYDFVEITES--MANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDG 73 (85)
T ss_pred CCc-eeecc-----ccCcchHHHHHHHHHcCCCceeeehhhh--hhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCC
Confidence 356 44544 4799999999999999999999999764 234444443 1 1366679999874 6
Q ss_pred eEEEechhhhh
Q 003337 277 ELVGGCDILSS 287 (828)
Q Consensus 277 e~IGG~del~~ 287 (828)
+.|=| ||+.+
T Consensus 74 ~vVl~-~Dl~k 83 (85)
T COG4545 74 KVVLG-DDLSK 83 (85)
T ss_pred cEEEe-chhhh
Confidence 66655 55443
No 81
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=95.77 E-value=0.03 Score=47.40 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
+.|++|.+++.+|+.+|++|+.+.++..+ +......+.+.+...++|.+..+|..+.....+.+.
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 7 FRSSASYRVRIALNLKGLDYEYVPVNLLK-GEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEecCcc-CCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 67999999999999999999998876421 112234566677788999999888877666555543
No 82
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.73 E-value=0.027 Score=47.99 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=49.5
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHh--CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhhhH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILES--QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILSSM 288 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~--~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~~l 288 (828)
.+|.. +.||+|.++.-+|.. .|++|+.+.++..... ..+.+.....++|.+.. ||..+.....+.+.
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD----ESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC----hHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 35655 789999999999999 8999999988753222 33455677789999975 67777666555543
No 83
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.72 E-value=0.028 Score=67.03 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHh----C-CCCeEEEEccCccCcHHHHHHHHHHhCC
Q 003337 192 NVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILES----Q-GVDYESVDVLDEEYNNGLRETLKKYSNW 266 (828)
Q Consensus 192 ~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~----~-gv~y~~idI~~~~~~~~~~~~L~~~sg~ 266 (828)
...+++++.++|+++-+.-.+.+|.. ++||+|.++++.+++ . +|+.+.+|+... +++.+..+-
T Consensus 460 ~~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-------~~~~~~~~v 527 (555)
T TIGR03143 460 GQPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-------PDLKDEYGI 527 (555)
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------HHHHHhCCc
Confidence 34566777888887766667888887 789999888876544 3 688888888543 345545678
Q ss_pred CCcceEEECCeE
Q 003337 267 PTFPQIFVNGEL 278 (828)
Q Consensus 267 ~TvPqIfI~Ge~ 278 (828)
.++|.++|||+.
T Consensus 528 ~~vP~~~i~~~~ 539 (555)
T TIGR03143 528 MSVPAIVVDDQQ 539 (555)
T ss_pred eecCEEEECCEE
Confidence 899999999974
No 84
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=95.70 E-value=0.031 Score=59.76 Aligned_cols=57 Identities=30% Similarity=0.584 Sum_probs=49.7
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeE
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGEL 278 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~ 278 (828)
.+++|-- ..||||-+++.+|+=+|++|.+++|+ |-.|++++ .+..+.||.+.+.||-
T Consensus 90 ~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEVn-----pV~r~eIk-~SsykKVPil~~~Geq 146 (370)
T KOG3029|consen 90 DLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEVN-----PVLRQEIK-WSSYKKVPILLIRGEQ 146 (370)
T ss_pred eEEEEee-----ccCchHHHHHHHHhhcCCceEEEEec-----chhhhhcc-ccccccccEEEeccce
Confidence 7899987 67999999999999999999999984 45677776 6788899999999874
No 85
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.68 E-value=0.036 Score=47.85 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 224 MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 224 ~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
.||+|.++..+|+..|++|+.++++. ++.+...++|.+..+|+.+.....+.+..+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~-----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL-----------AKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc-----------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 58999999999999999999988743 145667899999999999988887777554
No 86
>PHA02278 thioredoxin-like protein
Probab=95.68 E-value=0.073 Score=49.43 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=44.0
Q ss_pred hhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeE
Q 003337 207 VKENKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGEL 278 (828)
Q Consensus 207 i~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~ 278 (828)
.+..+|+|+-.. +||+.|+.+...|++. .+++..+|++.++. ..+.+.+..+-.++|.+ |-||+.
T Consensus 12 ~~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~---d~~~l~~~~~I~~iPT~i~fk~G~~ 84 (103)
T PHA02278 12 RQKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV---DREKAVKLFDIMSTPVLIGYKDGQL 84 (103)
T ss_pred hCCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc---ccHHHHHHCCCccccEEEEEECCEE
Confidence 346677777663 8999999998777553 24577788876521 12335555566778877 458886
Q ss_pred E
Q 003337 279 V 279 (828)
Q Consensus 279 I 279 (828)
+
T Consensus 85 v 85 (103)
T PHA02278 85 V 85 (103)
T ss_pred E
Confidence 5
No 87
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=95.49 E-value=0.039 Score=57.25 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE-ECCeEEEechhhhhHHhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF-VNGELVGGCDILSSMYEK 291 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf-I~Ge~IGG~del~~l~~s 291 (828)
..||+|.+++-+|+.+|++|+.+++..++. ... .+.....++|++. .||..+++...+.++..+
T Consensus 6 ~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~----~~~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 6 DHCPFCVRARMIFGLKNIPVEKHVLLNDDE----ETP-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CCCChHHHHHHHHHHcCCCeEEEECCCCcc----hhH-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 679999999999999999999998865421 122 4556678999997 788889888888886654
No 88
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.46 E-value=0.076 Score=45.66 Aligned_cols=64 Identities=28% Similarity=0.437 Sum_probs=43.0
Q ss_pred HHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHh-----CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--CC
Q 003337 205 KLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILES-----QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--NG 276 (828)
Q Consensus 205 ~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~-----~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~G 276 (828)
+.+++ .+++|+..+ ++|++|+++...|++ .++.+..+|++.. +++. +..+-..+|.+++ +|
T Consensus 5 ~~~~~~~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~----~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 5 ELIKSAKPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN---PELA----EEYGVRSIPTFLFFKNG 73 (93)
T ss_pred HHHhcCCcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCC---hhHH----HhcCcccccEEEEEECC
Confidence 33443 454444432 899999999999988 6788888888764 2332 2345678998766 77
Q ss_pred eEE
Q 003337 277 ELV 279 (828)
Q Consensus 277 e~I 279 (828)
+.+
T Consensus 74 ~~~ 76 (93)
T cd02947 74 KEV 76 (93)
T ss_pred EEE
Confidence 744
No 89
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=95.31 E-value=0.065 Score=45.58 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
.+|.. +.|+.|.+++-+|+..|++|+.+.++..+ .....+.+.....++|.+..+|..+.....+.+..
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEE---WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHH---hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 45655 67999999999999999999999886431 11123555677789999998888887766666543
No 90
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.29 E-value=0.1 Score=48.96 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=45.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELVG 280 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~IG 280 (828)
+..+|+++-.. +||+.|+.+...|++. ++.+-.+|++.. ++ +.+.-+-.++|.+ |-+|+.++
T Consensus 21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~---~~----l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA---PF----LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC---HH----HHHHCCCccCCEEEEEECCEEEE
Confidence 34566665553 8999999999888663 466777777654 23 4344466778877 55898776
Q ss_pred echhhhh
Q 003337 281 GCDILSS 287 (828)
Q Consensus 281 G~del~~ 287 (828)
-...+.+
T Consensus 90 ~~~g~~~ 96 (113)
T cd02989 90 RIVGFEE 96 (113)
T ss_pred EEECccc
Confidence 4444433
No 91
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.19 E-value=0.041 Score=51.99 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=36.9
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCc-HHHHHHHHHHhC
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYN-NGLRETLKKYSN 265 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~-~~~~~~L~~~sg 265 (828)
|.+|.. |.|.-|++|+++|+++|++|+.+|+.+.+-. .+++..+. ..|
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~-~~g 49 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA-KLG 49 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH-HcC
Confidence 468988 8999999999999999999999999876533 33443333 344
No 92
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.16 E-value=0.08 Score=50.22 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHHhh---cCcEEE-EEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 203 IDKLVK---ENKVVA-FIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 203 l~~li~---~~~Vvi-fsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+++.+. ..+|+| |.. +|||.|+.+...|++.- +.+-.+|+++. + .+.+..+-.++|.+
T Consensus 5 ~~~~i~~~~~~~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~---~----~la~~~~V~~iPTf 72 (114)
T cd02954 5 VDQAILSEEEKVVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV---P----DFNKMYELYDPPTV 72 (114)
T ss_pred HHHHHhccCCCEEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCC---H----HHHHHcCCCCCCEE
Confidence 444443 334555 555 89999999988885542 35667787665 3 34455677889987
Q ss_pred --EECCeEEE
Q 003337 273 --FVNGELVG 280 (828)
Q Consensus 273 --fI~Ge~IG 280 (828)
|-||+.++
T Consensus 73 ~~fk~G~~v~ 82 (114)
T cd02954 73 MFFFRNKHMK 82 (114)
T ss_pred EEEECCEEEE
Confidence 45888764
No 93
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.15 E-value=0.094 Score=54.80 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCC-----CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--C
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQG-----VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--N 275 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~g-----v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~ 275 (828)
++++.+...+++|.. ++++|||.|+.+..+|++.. +++..++++.++ ...+.+..+-.++|.+.+ |
T Consensus 14 ~~~~~~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-----~~~l~~~~~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 14 LKELKNPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-----DKEEAEKYGVERVPTTIILEE 86 (215)
T ss_pred HHhcCCCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-----cHHHHHHcCCCccCEEEEEeC
Confidence 344444456667755 55689999999999987652 445577777542 123444457788888865 6
Q ss_pred CeEE
Q 003337 276 GELV 279 (828)
Q Consensus 276 Ge~I 279 (828)
|+.+
T Consensus 87 g~~~ 90 (215)
T TIGR02187 87 GKDG 90 (215)
T ss_pred Ceee
Confidence 5544
No 94
>PTZ00051 thioredoxin; Provisional
Probab=95.14 E-value=0.13 Score=46.08 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=42.1
Q ss_pred HHHHHhhcC-cEE-EEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--
Q 003337 202 LIDKLVKEN-KVV-AFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI-- 272 (828)
Q Consensus 202 ~l~~li~~~-~Vv-ifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI-- 272 (828)
.++++++++ +++ .|.. +||+.|+++...|.+. ++.+-.+|+++. .+ +.+.-+-.++|.+
T Consensus 10 ~~~~~~~~~~~vli~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~---~~----~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYA-----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL---SE----VAEKENITSMPTFKV 77 (98)
T ss_pred HHHHHHhcCCeEEEEEEC-----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch---HH----HHHHCCCceeeEEEE
Confidence 355555654 343 4444 8999999998888763 456666676443 22 3333455677766
Q ss_pred EECCeEEEec
Q 003337 273 FVNGELVGGC 282 (828)
Q Consensus 273 fI~Ge~IGG~ 282 (828)
|-+|+.++.+
T Consensus 78 ~~~g~~~~~~ 87 (98)
T PTZ00051 78 FKNGSVVDTL 87 (98)
T ss_pred EeCCeEEEEE
Confidence 4478766544
No 95
>PRK10387 glutaredoxin 2; Provisional
Probab=95.04 E-value=0.063 Score=55.11 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=53.0
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE-EECCeEEEechhhhhHHhh
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI-FVNGELVGGCDILSSMYEK 291 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI-fI~Ge~IGG~del~~l~~s 291 (828)
.+|.. +.||+|.++.-+|+.+|++|+.++++..+ . ... .+..+..++|.+ ..||..+.....+.+..++
T Consensus 2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~---~-~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDD---E-ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCc---h-hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 46766 68999999999999999999999986542 1 112 345667799999 5678888888888777654
No 96
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.98 E-value=0.056 Score=51.48 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=32.8
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
.|.||.. |.|.-|++|+++|+++|++|+.+|+.++.
T Consensus 2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 3788988 89999999999999999999999998764
No 97
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.94 E-value=0.051 Score=51.15 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=36.9
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhC
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSN 265 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg 265 (828)
+.||.. |.|.-|++|+++|+++|++|+.+|+.+..-..+....+.+.+|
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 468888 8999999999999999999999999776533333333333344
No 98
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.93 E-value=0.064 Score=41.80 Aligned_cols=55 Identities=33% Similarity=0.546 Sum_probs=40.3
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHH-----hCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILE-----SQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~-----~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
++|.. .+|++|.++...++ ..++.+..++++... +..+. ....+..++|.+++.+
T Consensus 2 ~~~~~-----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYA-----PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred EEEEC-----CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhH-HHhCCCccccEEEEEe
Confidence 55666 68999999999999 567888888887762 33322 2335667899998765
No 99
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=94.79 E-value=0.18 Score=46.31 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=40.9
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeEEE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGELVG 280 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~IG 280 (828)
..+|+|.-.. +||+.|+++...|++. ++.+-.+|+++. ++. ..+.+..+-..+|.+. -+|+.++
T Consensus 15 ~k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~---~~~-~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 15 GRLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN---DST-MELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred CCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC---hHH-HHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 3566665553 8999999998888653 455666776554 222 2344445677888664 4787553
No 100
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.79 E-value=0.061 Score=51.88 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=37.2
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc-CcHHHHHHHHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE-YNNGLRETLKK 262 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~-~~~~~~~~L~~ 262 (828)
.++||.. |.|.-|++|+++|+++|++|+.+|+.++. ...+++..+..
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 4679988 89999999999999999999999997754 22344444443
No 101
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=94.78 E-value=0.053 Score=47.75 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhhHHh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSSMYE 290 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~l~~ 290 (828)
+.|++|.++.-+|..+|++|+.+.++..+ .......+ +......+|.+..+ |..+.+...+.++.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~-~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPD-IPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCC-cccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 67999999999999999999998876432 12233344 45667899999888 888888877777654
No 102
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=94.64 E-value=0.13 Score=44.17 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
.+|.. +.|++|+++.-+|+..|++|+.+.++..+ ++...+.+.+.....++|.+..+|..+-....+.+..
T Consensus 2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRK-GEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCC-CCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 46666 78999999999999999999998876432 1122235666777789999988887665555555443
No 103
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.62 E-value=0.16 Score=48.80 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHhhcC-cEEEEEecCCCCCCCCcHHHHHH-HHHh------CCCCeEEEEccCccCcHHHHHHHH----HHhCCCC
Q 003337 201 ELIDKLVKEN-KVVAFIKGSRSAPMCGFSQKVIG-ILES------QGVDYESVDVLDEEYNNGLRETLK----KYSNWPT 268 (828)
Q Consensus 201 ~~l~~li~~~-~VvifsKgt~~~~~C~~C~~ak~-lL~~------~gv~y~~idI~~~~~~~~~~~~L~----~~sg~~T 268 (828)
+.++++.+++ +|+|+..+ +||++|+++.+ .+.+ ..-.|..+.+|.++ .+++.+... .+.|...
T Consensus 6 eal~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 6 EAFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-RPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-CcHHHHHHHHHHHHhcCCCC
Confidence 3466677764 67776553 89999999964 4433 23356666555443 345544332 2346778
Q ss_pred cceEEE---CCeEEEec
Q 003337 269 FPQIFV---NGELVGGC 282 (828)
Q Consensus 269 vPqIfI---~Ge~IGG~ 282 (828)
+|.+.+ +|+.+-++
T Consensus 81 ~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 81 WPLNVFLTPDLKPFFGG 97 (124)
T ss_pred CCEEEEECCCCCEEeee
Confidence 888743 58888433
No 104
>PRK10026 arsenate reductase; Provisional
Probab=94.48 E-value=0.092 Score=51.64 Aligned_cols=46 Identities=15% Similarity=0.434 Sum_probs=37.8
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc-CcHHHHHHHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE-YNNGLRETLK 261 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~-~~~~~~~~L~ 261 (828)
.+.||.. |.|.-|++|+++|+++|++|+++|+.++. ...++++.+.
T Consensus 3 ~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 3 NITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred EEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 5789999 89999999999999999999999997764 3344555554
No 105
>PRK10853 putative reductase; Provisional
Probab=94.46 E-value=0.073 Score=50.73 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc-CcHHHHHHHH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE-YNNGLRETLK 261 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~-~~~~~~~~L~ 261 (828)
+.||.. |.|.-|++|+++|+++|++|+.+|+.++. ..+++.+.+.
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 678988 89999999999999999999999997754 2234444443
No 106
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=94.39 E-value=0.18 Score=43.83 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=52.8
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC---CeEEEechhhhhH
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN---GELVGGCDILSSM 288 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~---Ge~IGG~del~~l 288 (828)
+.+|.. +. |+|.++.-+|+..|++|+.+.++... +....+.+.+.+...++|.+..+ |..+.....+.+.
T Consensus 2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISK-GEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcC-CcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 457765 54 99999999999999999988776321 12334556667777899999887 7777776666665
Q ss_pred Hh
Q 003337 289 YE 290 (828)
Q Consensus 289 ~~ 290 (828)
..
T Consensus 75 L~ 76 (81)
T cd03048 75 LA 76 (81)
T ss_pred HH
Confidence 44
No 107
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.37 E-value=0.15 Score=48.23 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHHHhhcC--cEEEEEecCCCCCCCCcHHHHHHHHH-------h--CCCCeEEEEccCccCcH------HHHHHHHHH
Q 003337 201 ELIDKLVKEN--KVVAFIKGSRSAPMCGFSQKVIGILE-------S--QGVDYESVDVLDEEYNN------GLRETLKKY 263 (828)
Q Consensus 201 ~~l~~li~~~--~VvifsKgt~~~~~C~~C~~ak~lL~-------~--~gv~y~~idI~~~~~~~------~~~~~L~~~ 263 (828)
+.++++.+++ +|+|+-.+ +||++|+++...+. . .++.+..+|++.+.... .-...+...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3466666766 56555543 89999999875442 1 13445556665431000 012345555
Q ss_pred hCCCCcceE-EECC
Q 003337 264 SNWPTFPQI-FVNG 276 (828)
Q Consensus 264 sg~~TvPqI-fI~G 276 (828)
.+..++|.+ |+++
T Consensus 80 ~~v~~~Pt~~~~~~ 93 (125)
T cd02951 80 YRVRFTPTVIFLDP 93 (125)
T ss_pred cCCccccEEEEEcC
Confidence 677899996 4553
No 108
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.94 E-value=0.17 Score=45.76 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=41.8
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV- 274 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI- 274 (828)
.+++++...++.|.. +||+.|+++...+++. ++.+-.+|.++. ++ +.+..+-.++|.+++
T Consensus 11 f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~---~~----~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 11 WTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE---PG----LSGRFFVTALPTIYHA 78 (101)
T ss_pred HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC---Hh----HHHHcCCcccCEEEEe
Confidence 455666777777777 8999999998887543 345566666543 23 333446788888865
Q ss_pred -CCe
Q 003337 275 -NGE 277 (828)
Q Consensus 275 -~Ge 277 (828)
+|+
T Consensus 79 ~~g~ 82 (101)
T cd02994 79 KDGV 82 (101)
T ss_pred CCCC
Confidence 454
No 109
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=93.91 E-value=0.19 Score=43.27 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhhH
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSSM 288 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~l 288 (828)
+.|++|.++.-+|+..|++|+.++++... ....+.+++.+-..++|.+..+ |..+.....+.++
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 7 PGNPRSLKILAAAKYNGLDVEIVDFQPGK--ENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred CCCccHHHHHHHHHHcCCceEEEeccccc--ccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 78999999999999999999999887542 1223456667777899999874 7666555544443
No 110
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.86 E-value=0.19 Score=43.21 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=50.0
Q ss_pred CCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 222 APMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 222 ~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
...|++|.++.-+|+..|++|+.+.++..+ .+....+++.+-...+|.+..+|+.+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~--~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYT--PDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCC--ccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 367999999999999999999998886532 12235666777788999999898877666555543
No 111
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=93.64 E-value=0.47 Score=42.08 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=39.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--CCeEEE
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--NGELVG 280 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~Ge~IG 280 (828)
+++|+.-. +||+.|+.+...|++. .+.+-.+|.+.. ++ +.+..+..++|.+++ +|+.++
T Consensus 16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~---~~----~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN---PD----IAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC---HH----HHHHcCCCcCCEEEEEeCCcEee
Confidence 66666653 8999999998777553 255666676554 23 333457789999866 776543
No 112
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.18 Score=55.04 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcce
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ 271 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq 271 (828)
..+..+.+-..+.||+++-.. |||+.|++....|+..- +..-.+|+|.+ +.+ ...-|-.++|.
T Consensus 32 nfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~---p~v----AaqfgiqsIPt 100 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE---PMV----AAQFGVQSIPT 100 (304)
T ss_pred HHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc---hhH----HHHhCcCcCCe
Confidence 566667777777899988884 99999999999997752 23456677665 333 33446789999
Q ss_pred E--EECCeEEEechhh
Q 003337 272 I--FVNGELVGGCDIL 285 (828)
Q Consensus 272 I--fI~Ge~IGG~del 285 (828)
| |++|++|-||--.
T Consensus 101 V~af~dGqpVdgF~G~ 116 (304)
T COG3118 101 VYAFKDGQPVDGFQGA 116 (304)
T ss_pred EEEeeCCcCccccCCC
Confidence 8 6899999777543
No 113
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.064 Score=48.98 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=58.8
Q ss_pred CcEEEEEecCCCCCCCCc----HHHHHHHHHhCCCCeEEEEccCccCcHH-----HHHHHHHHhCCCCcceEEECCeEEE
Q 003337 210 NKVVAFIKGSRSAPMCGF----SQKVIGILESQGVDYESVDVLDEEYNNG-----LRETLKKYSNWPTFPQIFVNGELVG 280 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~----C~~ak~lL~~~gv~y~~idI~~~~~~~~-----~~~~L~~~sg~~TvPqIfI~Ge~IG 280 (828)
..+.+|++++ +..+. -..++.+|+...+.|+++||...++.+. ++++++-..|.+.-||||-+.+..|
T Consensus 2 ~~irvyvass---sg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~G 78 (108)
T KOG4023|consen 2 MVIRVYVASS---SGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCG 78 (108)
T ss_pred CceEEEEecC---CCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccc
Confidence 3567888853 33222 2357789999999999999987642222 3344555668999999999999999
Q ss_pred echhhhhHHhhc
Q 003337 281 GCDILSSMYEKG 292 (828)
Q Consensus 281 G~del~~l~~sG 292 (828)
++|.+.+..++.
T Consensus 79 dye~F~ea~E~n 90 (108)
T KOG4023|consen 79 DYELFFEAVEQN 90 (108)
T ss_pred cHHHHHHHHHHH
Confidence 999998887766
No 114
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=93.41 E-value=0.23 Score=51.44 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=52.1
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
.+.+|+. +.|++|.++.-+|+++|++|+.+.|+... ..+++.+..-..++|.+..||..+--..-+.++
T Consensus 10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~~----~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~Y 78 (211)
T PRK09481 10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKDN----LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEY 78 (211)
T ss_pred eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCccc----CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 4678987 78999999999999999999999987542 223555666677999998887665444444443
No 115
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.31 E-value=0.51 Score=48.40 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCCCCcCCCCCCCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHH----HHHHHhCCCCeEEEEccCc
Q 003337 180 KKKPDLRLTPGHNVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKV----IGILESQGVDYESVDVLDE 250 (828)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~a----k~lL~~~gv~y~~idI~~~ 250 (828)
+++++.++.+|+...++ +-++|+|.. +|||+|++. +++-+++|+++..+.++..
T Consensus 53 ~~~~~f~l~dG~~v~ls------------d~~lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 53 PAPRWFRLSNGRQVNLA------------DWKVVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred CCCCccCCCCCCEeehh------------HceEEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 35677777766654422 112888888 799999998 5666667877777777643
No 116
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.20 E-value=0.23 Score=47.07 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=34.9
Q ss_pred hHHHHHHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCc
Q 003337 198 PLEELIDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDE 250 (828)
Q Consensus 198 ~~~~~l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~ 250 (828)
+.++.++++..+ ++|+|+-.+ +||++|+++...+.+. ...|..++++.+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~ 62 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDD 62 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC
Confidence 356777777665 456664442 8999999998887663 346888888765
No 117
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=93.07 E-value=0.68 Score=43.14 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=44.1
Q ss_pred CcEEE-EEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEEEe
Q 003337 210 NKVVA-FIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELVGG 281 (828)
Q Consensus 210 ~~Vvi-fsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~IGG 281 (828)
.+|+| |.. |||+.|+.+...|++. ++.|-.+|+++ . .+.+..+-.++|.+ |-+|+.++.
T Consensus 25 ~~vvv~F~a-----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~------~--~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 25 TRVVVHFYE-----PGFPRCKILDSHLEELAAKYPETKFVKINAEK------A--FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred CEEEEEEeC-----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh------h--HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 45654 545 8999999999888653 34555555532 1 55555577888977 569998876
Q ss_pred chhhhhH
Q 003337 282 CDILSSM 288 (828)
Q Consensus 282 ~del~~l 288 (828)
..-...+
T Consensus 92 ~~G~~~~ 98 (113)
T cd02957 92 IVGFEEL 98 (113)
T ss_pred EecHHHh
Confidence 6655554
No 118
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=92.98 E-value=0.48 Score=44.13 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGEL 278 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~ 278 (828)
+..+++|+--. |||+.|+.+...+.+ .++.+-.+|++.. + .+.+..+-.++|.++ -+|+.
T Consensus 23 ~~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~---~----~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 23 FKKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE---R----RLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred CCCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc---H----HHHHHcCCccCCEEEEEECCEE
Confidence 34677766663 899999988766533 2456667777554 2 234445778899875 57876
Q ss_pred E
Q 003337 279 V 279 (828)
Q Consensus 279 I 279 (828)
+
T Consensus 92 ~ 92 (111)
T cd02963 92 T 92 (111)
T ss_pred E
Confidence 5
No 119
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.87 E-value=0.059 Score=52.16 Aligned_cols=79 Identities=14% Similarity=0.282 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHH----HhC-CCCeEEEEccCccCcHHHHHHHHHHhCCCCc
Q 003337 195 LTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGIL----ESQ-GVDYESVDVLDEEYNNGLRETLKKYSNWPTF 269 (828)
Q Consensus 195 ~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL----~~~-gv~y~~idI~~~~~~~~~~~~L~~~sg~~Tv 269 (828)
++++..++++.+-+.-.+++++- +|||.|.+.+=+| +.. +++...+..|++ +++.+.... .|.+.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el~~~~lt-~g~~~I 98 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KELMDQYLT-NGGRSI 98 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHHTTTTTT--SS--S
T ss_pred CCHHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhHHHHHHh-CCCeec
Confidence 44566777888877789999998 8999999987655 444 666766665443 344333333 578899
Q ss_pred ceEEE-C--CeEEEec
Q 003337 270 PQIFV-N--GELVGGC 282 (828)
Q Consensus 270 PqIfI-~--Ge~IGG~ 282 (828)
|.+.+ | |+.+|-+
T Consensus 99 P~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 99 PTFIFLDKDGKELGRW 114 (129)
T ss_dssp SEEEEE-TT--EEEEE
T ss_pred CEEEEEcCCCCEeEEE
Confidence 99855 3 4555433
No 120
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.82 E-value=0.77 Score=41.97 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=38.5
Q ss_pred HHHHhh-cCcEEEEEecCCCCCCCCcHHHHHHHHHhC----C---CCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--
Q 003337 203 IDKLVK-ENKVVAFIKGSRSAPMCGFSQKVIGILESQ----G---VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI-- 272 (828)
Q Consensus 203 l~~li~-~~~VvifsKgt~~~~~C~~C~~ak~lL~~~----g---v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI-- 272 (828)
++++++ ..+|+|+-.. +||+.|+.+...|++. + +.+..+|++ . ++ +.+..+...+|.+
T Consensus 10 ~~~~i~~~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~----~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 10 WEELLSNKGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---ID----TLKRYRGKCEPTFLF 77 (102)
T ss_pred HHHHHccCCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HH----HHHHcCCCcCcEEEE
Confidence 444444 4555555553 8999999998777543 2 335555655 2 22 2334466788865
Q ss_pred EECCeEE
Q 003337 273 FVNGELV 279 (828)
Q Consensus 273 fI~Ge~I 279 (828)
|-+|+.+
T Consensus 78 ~~~g~~~ 84 (102)
T cd02948 78 YKNGELV 84 (102)
T ss_pred EECCEEE
Confidence 4578754
No 121
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=92.79 E-value=0.55 Score=41.83 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=40.3
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeEEE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGELVG 280 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~IG 280 (828)
..+++|+-.. +||+.|+.++..|++. ++.+-.+|.++. ..+.+..+-..+|.+. -+|+.+.
T Consensus 17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-------KELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-------HHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhcc-------chhhhccCCCCCCEEEEEECCcEEE
Confidence 3566655542 8999999999887543 355666676543 2344455678899884 4777654
No 122
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=92.63 E-value=0.54 Score=40.05 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSS 287 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~ 287 (828)
+.+++|.++.-+|++.|++|+.++++... ++...+.+++.+...++|.+-.+|..+.....+.+
T Consensus 7 ~~s~~~~~v~~~L~~~~l~~~~~~~~~~~-~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 7 RSSINVQKVLWLLDELGLPYERIDAGGQF-GGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCEEEEecccc-ccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 67999999999999999999998876421 12234556667777899999888876655444443
No 123
>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....
Probab=92.52 E-value=0.12 Score=44.53 Aligned_cols=34 Identities=21% Similarity=0.601 Sum_probs=30.9
Q ss_pred cceEEEEEcCCCCeeEeechhhHHHHHhhhcccc
Q 003337 91 ETGVYAVYDKNDELQFVGISRNIGASVFSHLKSV 124 (828)
Q Consensus 91 ~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~ 124 (828)
+.|||.|++.++.+.|||-|+|+.-=+++|....
T Consensus 1 k~gIY~i~~~~~~~~YIG~t~nl~~R~~~H~~~~ 34 (80)
T PF01541_consen 1 KYGIYIIYNKDNKKIYIGSTKNLKKRLNEHFSGN 34 (80)
T ss_dssp -EEEEEEEETTTEEEEEEEESSHHHHHHHHHHHC
T ss_pred CcEEEEEEECCCCEEEEEEECCHHHHHHHHhcCC
Confidence 4799999999999999999999999999997764
No 124
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=92.29 E-value=0.57 Score=41.74 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=35.3
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELV 279 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~I 279 (828)
.+|+|+--. +||+.|+++...|++. .+.+-.+|.++. + ++.+..+-.++|.+ |-+|+.+
T Consensus 15 ~~v~v~f~~----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~---~----~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHFWA----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL---P----EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC---H----HHHHhcCCccccEEEEEECCEEE
Confidence 455444442 8999999998888752 233444444332 2 33344566788966 4577754
No 125
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=92.23 E-value=0.17 Score=54.96 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 224 MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 224 ~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
.||||.++.-+|+++|++|+.+.|+..... +.+.+++-...+|.+..+|..+.-...+.++.+
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~----~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNKP----EWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcCC----HHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 599999999999999999999877654322 234556666799999998877766666666544
No 126
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.48 Score=46.92 Aligned_cols=70 Identities=27% Similarity=0.332 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhc-CcEE-EEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCc
Q 003337 198 PLEELIDKLVKE-NKVV-AFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTF 269 (828)
Q Consensus 198 ~~~~~l~~li~~-~~Vv-ifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~Tv 269 (828)
+..+.-++++++ .||+ -|.. +||+.|+.+.-+|++.- +++-.+|+|++ .+ +.+..+-..+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~---~e----la~~Y~I~av 116 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH---PE----LAEDYEISAV 116 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc---cc----hHhhcceeee
Confidence 456666666665 4664 5766 89999999999998763 34556677665 23 4445566789
Q ss_pred ceE--EECCeEE
Q 003337 270 PQI--FVNGELV 279 (828)
Q Consensus 270 PqI--fI~Ge~I 279 (828)
|.+ |-||+-+
T Consensus 117 PtvlvfknGe~~ 128 (150)
T KOG0910|consen 117 PTVLVFKNGEKV 128 (150)
T ss_pred eEEEEEECCEEe
Confidence 987 5688743
No 127
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=92.01 E-value=0.72 Score=41.13 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=37.8
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGELV 279 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~I 279 (828)
.+++|+-.. +||+.|+++...|++.. +.+-.+|++.. + .+.+..+-.++|.++ -+|+.+
T Consensus 13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~----~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ---P----QIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC---H----HHHHHcCCCCCCEEEEEeCCEEe
Confidence 366666653 89999999988776532 33445566543 2 344445677899885 467654
No 128
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=91.96 E-value=0.61 Score=40.06 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEEC-CeEEEechhhhhHH
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVN-GELVGGCDILSSMY 289 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~-Ge~IGG~del~~l~ 289 (828)
+.| .|.++.-+|.+.|++|+.++++..+ +....+++.+.+....+|.+..+ |..+.....+.+..
T Consensus 7 ~~~-~~~~v~~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 7 PGA-CSLAPHIALEELGLPFELVRVDLRT-KTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred CCC-chHHHHHHHHHcCCCceEEEEeccc-CccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 445 4889999999999999998876532 11224566677888899999887 77776666665544
No 129
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.90 E-value=0.29 Score=45.68 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCcc
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEE 251 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~ 251 (828)
+.|.-|++|+++|+++|++|+.+|+.++.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 78999999999999999999999998764
No 130
>PRK09381 trxA thioredoxin; Provisional
Probab=91.83 E-value=0.67 Score=42.48 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=40.1
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHh----C--CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE--CCeEEE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILES----Q--GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV--NGELVG 280 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~----~--gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI--~Ge~IG 280 (828)
..+++|+--. +|||.|+.+...|++ . ++.+-.+|++.. +. +.+..+..++|.+++ +|+.++
T Consensus 21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~---~~----~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PG----TAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC---hh----HHHhCCCCcCCEEEEEeCCeEEE
Confidence 4556555553 899999999877754 2 245566677554 23 233457789998855 888764
No 131
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=91.75 E-value=0.37 Score=51.43 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=52.6
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEK 291 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~s 291 (828)
+.||+|+++.-.|..+|++|+.+.|+.... .+.+.++.-..++|.+..+|..+.....+.++..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~----~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK----PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC----CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 569999999999999999999999876521 24566677778999998888888888887777654
No 132
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.71 E-value=0.75 Score=45.84 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHh--CCCCcceE--EECCeEEE
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYS--NWPTFPQI--FVNGELVG 280 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~s--g~~TvPqI--fI~Ge~IG 280 (828)
+|.|.. +||+.|+++...|++. ++.+-.+|+++. +++.+.+.-.+ +.+.+|.+ |-+|+.++
T Consensus 51 vV~Fya-----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~---~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFT-----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF---PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 455555 8999999998777443 355667777665 44443332111 12237765 67898876
Q ss_pred echh
Q 003337 281 GCDI 284 (828)
Q Consensus 281 G~de 284 (828)
...-
T Consensus 123 r~~G 126 (152)
T cd02962 123 RRPY 126 (152)
T ss_pred EEec
Confidence 4443
No 133
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=91.61 E-value=0.44 Score=43.53 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------C--CCeEEEEccCccCcHHHHHHHHHHhCCCCc
Q 003337 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------G--VDYESVDVLDEEYNNGLRETLKKYSNWPTF 269 (828)
Q Consensus 199 ~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------g--v~y~~idI~~~~~~~~~~~~L~~~sg~~Tv 269 (828)
+++.++++.+..+++|+-.. +|||.|++....|++. + +.+..+|++.. + .+.+..+-.++
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~----~~~~~~~I~~~ 73 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---S----SIASEFGVRGY 73 (104)
T ss_pred chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---H----hHHhhcCCccc
Confidence 44556666666677766663 8999999888776442 2 23334455432 2 33444567889
Q ss_pred ceEEE
Q 003337 270 PQIFV 274 (828)
Q Consensus 270 PqIfI 274 (828)
|.+++
T Consensus 74 Pt~~l 78 (104)
T cd03000 74 PTIKL 78 (104)
T ss_pred cEEEE
Confidence 98854
No 134
>PRK10996 thioredoxin 2; Provisional
Probab=91.23 E-value=1.1 Score=43.75 Aligned_cols=66 Identities=29% Similarity=0.463 Sum_probs=39.6
Q ss_pred HHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHhC----C--CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-
Q 003337 203 IDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILESQ----G--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV- 274 (828)
Q Consensus 203 l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~~----g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI- 274 (828)
+++++++ .+|+|+-.. +||+.|+++...|++. + +.+-.+|+++. ++ +.+..+..++|.+.+
T Consensus 45 ~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~---~~----l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE---RE----LSARFRIRSIPTIMIF 113 (139)
T ss_pred HHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC---HH----HHHhcCCCccCEEEEE
Confidence 4445543 455555442 8999999987777553 2 33445565443 33 334456678887744
Q ss_pred -CCeEE
Q 003337 275 -NGELV 279 (828)
Q Consensus 275 -~Ge~I 279 (828)
+|+.+
T Consensus 114 ~~G~~v 119 (139)
T PRK10996 114 KNGQVV 119 (139)
T ss_pred ECCEEE
Confidence 78754
No 135
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=91.17 E-value=0.78 Score=42.09 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=39.0
Q ss_pred HHHHhhcCc-EE-EEEecCCCCCCCCcHHHHHHHHHhC------------CCCeEEEEccCccCcHHHHHHHHHHhCCCC
Q 003337 203 IDKLVKENK-VV-AFIKGSRSAPMCGFSQKVIGILESQ------------GVDYESVDVLDEEYNNGLRETLKKYSNWPT 268 (828)
Q Consensus 203 l~~li~~~~-Vv-ifsKgt~~~~~C~~C~~ak~lL~~~------------gv~y~~idI~~~~~~~~~~~~L~~~sg~~T 268 (828)
+++++++++ ++ .|.. |||++|+++...+++. .+.+-.+|.+.. + .+.+..|-.+
T Consensus 11 f~~~i~~~~~vlv~F~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---~----~l~~~~~v~~ 78 (108)
T cd02996 11 IDDILQSAELVLVNFYA-----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---S----DIADRYRINK 78 (108)
T ss_pred HHHHHhcCCEEEEEEEC-----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---H----HHHHhCCCCc
Confidence 444555543 33 4444 8999999999887532 244556666554 2 3444457789
Q ss_pred cceEEE--CCe
Q 003337 269 FPQIFV--NGE 277 (828)
Q Consensus 269 vPqIfI--~Ge 277 (828)
+|.+++ +|+
T Consensus 79 ~Ptl~~~~~g~ 89 (108)
T cd02996 79 YPTLKLFRNGM 89 (108)
T ss_pred CCEEEEEeCCc
Confidence 998854 554
No 136
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=91.08 E-value=0.95 Score=41.84 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 223 PMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+||++|++++..+.+. ++.+-.+|++.+. .+...+..+...+|.++
T Consensus 31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-----~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-----REFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-----hhhHHhhcCCCcCCEEE
Confidence 8999999999888653 2445555665421 12233445778899874
No 137
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=91.08 E-value=0.76 Score=41.59 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=37.9
Q ss_pred HHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-
Q 003337 203 IDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV- 274 (828)
Q Consensus 203 l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI- 274 (828)
.++.+++ .+++|+--. +||+.|+++...+++.. +.+-.+|+++. ++ +.+..+-.++|.+++
T Consensus 11 f~~~v~~~~~~~v~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~---~~----~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 11 FDAAVNSGEIWFVNFYS----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD---RM----LCRSQGVNSYPSLYVF 79 (101)
T ss_pred HHHHhcCCCeEEEEEEC----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc---HH----HHHHcCCCccCEEEEE
Confidence 3444444 344443332 89999999988875542 34555666543 22 333446678898844
Q ss_pred -CCe
Q 003337 275 -NGE 277 (828)
Q Consensus 275 -~Ge 277 (828)
+|+
T Consensus 80 ~~g~ 83 (101)
T cd03003 80 PSGM 83 (101)
T ss_pred cCCC
Confidence 565
No 138
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=91.03 E-value=0.95 Score=44.31 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=42.4
Q ss_pred HHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE-E
Q 003337 203 IDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF-V 274 (828)
Q Consensus 203 l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf-I 274 (828)
+++++++ .+++|+-.. +||+.|+++...|.+. .+.+..++++... .. .+.+..+-..+|.++ +
T Consensus 13 ~~~a~~~gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~----~~-~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 13 PEVALSNGKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK----WL-PEIDRYRVDGIPHFVFL 83 (142)
T ss_pred HHHHHhCCCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc----cH-HHHHHcCCCCCCEEEEE
Confidence 4444444 566666553 8999999998887653 2456667776541 12 233345678899875 4
Q ss_pred --CCeEE
Q 003337 275 --NGELV 279 (828)
Q Consensus 275 --~Ge~I 279 (828)
+|+.+
T Consensus 84 ~~~G~~v 90 (142)
T cd02950 84 DREGNEE 90 (142)
T ss_pred CCCCCEE
Confidence 47655
No 139
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=91.00 E-value=0.46 Score=43.61 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=36.4
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHh-----C----CCCeEEEEccCccCc-------------HHHHHHHHHHhCCCC
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILES-----Q----GVDYESVDVLDEEYN-------------NGLRETLKKYSNWPT 268 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~-----~----gv~y~~idI~~~~~~-------------~~~~~~L~~~sg~~T 268 (828)
.+++|.. |+||+|+++.+-+.+ . ++.+..++++...+. .....++.+..|-..
T Consensus 8 ~v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 8 IVVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp EEEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred EEEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4556655 999999999766653 1 223334455433100 012245666668889
Q ss_pred cceEEE-C--Ce---EEEechhhhh
Q 003337 269 FPQIFV-N--GE---LVGGCDILSS 287 (828)
Q Consensus 269 vPqIfI-~--Ge---~IGG~del~~ 287 (828)
+|.+++ | |+ .+-|+-.-.+
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~ 107 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEE 107 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHH
Confidence 999965 4 66 3445543333
No 140
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=90.84 E-value=0.77 Score=48.85 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhC---CCCeEEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQ---GVDYESV 245 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~---gv~y~~i 245 (828)
..|++|+- |.||||+++.+.|.+. ++.+..+
T Consensus 109 ~~I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 109 HVITVFTD-----ITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred EEEEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 45889988 9999999998888775 4554443
No 141
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=90.83 E-value=0.95 Score=39.62 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHhhcC-cEE-EEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 202 LIDKLVKEN-KVV-AFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 202 ~l~~li~~~-~Vv-ifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
.+++++++. +++ .|.. ++|++|+++...+++. +-.+....++.++ ...+.+..+-+.+|.++
T Consensus 7 ~~~~~i~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 7 NFDELVKDSKDVLVEFYA-----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----NNDLCSEYGVRGYPTIK 76 (101)
T ss_pred HHHHHHhCCCcEEEEEEC-----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----hHHHHHhCCCCCCCEEE
Confidence 355556555 554 4544 8999999998888552 2223333443321 12344445678899885
Q ss_pred E
Q 003337 274 V 274 (828)
Q Consensus 274 I 274 (828)
+
T Consensus 77 ~ 77 (101)
T cd02961 77 L 77 (101)
T ss_pred E
Confidence 4
No 142
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=90.57 E-value=1 Score=38.24 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 226 GFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 226 ~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.|.++.-+|+..|++|+.+.++... +......+.+.....++|.+..+|+.+.....+.+...
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGP-GEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCC-CccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 56889999999999999998876421 11223455566777899999999988887777776654
No 143
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.66 Score=49.24 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=58.4
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHh-CCCCcceEEECCeEEEechhhhhH
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS-NWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~s-g~~TvPqIfI~Ge~IGG~del~~l 288 (828)
..|.+|+. -.|||.+|+.-.|+.+||+|++++++-.. --+.+.+.. -+..+|.+--||+.|+-.-.+.++
T Consensus 8 ~~vrL~~~-----w~sPfa~R~~iaL~~KgI~yE~veedl~~----Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 8 GTVKLLGM-----WFSPFAQRVRIALKLKGIPYEYVEEDLTN----KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CeEEEEEe-----ecChHHHHHHHHHHhcCCceEEEecCCCC----CCHHHHHhccccccCCEEEECCceehhhHHHHHH
Confidence 56889988 67999999999999999999999887642 123344555 567899999999998877777776
Q ss_pred Hhhc
Q 003337 289 YEKG 292 (828)
Q Consensus 289 ~~sG 292 (828)
..+-
T Consensus 79 iDe~ 82 (231)
T KOG0406|consen 79 IDET 82 (231)
T ss_pred HHhh
Confidence 6544
No 144
>PRK15113 glutathione S-transferase; Provisional
Probab=90.48 E-value=0.88 Score=47.16 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=51.5
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhh
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSS 287 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~ 287 (828)
..+.+|.... +.|++|.++.-+|+++|++|+.+.++-.. ++...+++.+..-...||.+-.||..|--..-+.+
T Consensus 4 ~~~~Ly~~~~---~~s~~~~rv~~~l~e~gi~~e~~~v~~~~-~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 4 PAITLYSDAH---FFSPYVMSAFVALQEKGLPFELKTVDLDA-GEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred CeEEEEeCCC---CCCchHHHHHHHHHHcCCCCeEEEeCCCC-ccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHH
Confidence 4567887510 36999999999999999999998886431 12233556666767799999888765544333433
No 145
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=90.28 E-value=0.87 Score=40.80 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=38.3
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC---------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ---------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~---------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+++.+.+.+++|+--. +||+.|++....+++. .+.+-.+|.+.. + .+.+..+-.++|.++
T Consensus 10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---~----~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH---R----ELCSEFQVRGYPTLL 78 (102)
T ss_pred HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC---h----hhHhhcCCCcCCEEE
Confidence 4555555566554442 8999999987766443 233445555443 2 233334667899864
Q ss_pred --ECCeEE
Q 003337 274 --VNGELV 279 (828)
Q Consensus 274 --I~Ge~I 279 (828)
-+|+.+
T Consensus 79 ~~~~g~~~ 86 (102)
T cd03005 79 LFKDGEKV 86 (102)
T ss_pred EEeCCCee
Confidence 366543
No 146
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=90.02 E-value=1.7 Score=41.13 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=41.5
Q ss_pred CcEEEEEecCCCCC--CCCcHHHHHHHHHhCCC------CeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEE
Q 003337 210 NKVVAFIKGSRSAP--MCGFSQKVIGILESQGV------DYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELV 279 (828)
Q Consensus 210 ~~VvifsKgt~~~~--~C~~C~~ak~lL~~~gv------~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~I 279 (828)
.++|++... + +||.|+.+.-+|++.-- .+-.+|+++. + .+....+-.++|.+ |-||+.+
T Consensus 28 ~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~---~----~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 28 GDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE---Q----ALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred CCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC---H----HHHHHcCCCcCCEEEEEECCEEE
Confidence 555555543 5 49999999988866432 3445666554 2 55555677888887 5599887
Q ss_pred Eech
Q 003337 280 GGCD 283 (828)
Q Consensus 280 GG~d 283 (828)
+...
T Consensus 97 ~~~~ 100 (111)
T cd02965 97 GVLA 100 (111)
T ss_pred EEEe
Confidence 6553
No 147
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=89.71 E-value=1.7 Score=41.63 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHhhcC--cEEEEEecCCCCCCCCc--HH----------HHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCC
Q 003337 201 ELIDKLVKEN--KVVAFIKGSRSAPMCGF--SQ----------KVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNW 266 (828)
Q Consensus 201 ~~l~~li~~~--~VvifsKgt~~~~~C~~--C~----------~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~ 266 (828)
+-.++.++++ ++++|-.. +||+. |+ .+.++|++.++.+-.+|++.. + .|.+..|-
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~---~----~La~~~~I 85 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD---A----KVAKKLGL 85 (120)
T ss_pred hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC---H----HHHHHcCC
Confidence 3355556655 67777662 56765 97 344566667888999999765 3 34445566
Q ss_pred CCcceE--EECCeEEE
Q 003337 267 PTFPQI--FVNGELVG 280 (828)
Q Consensus 267 ~TvPqI--fI~Ge~IG 280 (828)
.++|.+ |-||+.+.
T Consensus 86 ~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 86 DEEDSIYVFKDDEVIE 101 (120)
T ss_pred ccccEEEEEECCEEEE
Confidence 778877 67998764
No 148
>PLN02378 glutathione S-transferase DHAR1
Probab=89.47 E-value=0.83 Score=47.49 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
..||||.++.-+|+++|++|+.+.|+-... + +.+.+..-..++|.+-.||..|.-...+.++.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~---~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-P---QWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-C---HHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 469999999999999999999888765421 1 24556777789999988887665555555543
No 149
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=88.96 E-value=1.5 Score=39.72 Aligned_cols=45 Identities=29% Similarity=0.422 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 223 PMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
+||+.|+++...+++. .+.+-.+|.+.. + .+.+..+-..+|.+++
T Consensus 29 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~----~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 29 PWCGPCQALLPELRKAARALKGKVKVGSVDCQKY---E----SLCQQANIRAYPTIRL 79 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch---H----HHHHHcCCCcccEEEE
Confidence 8999999987777543 245566676543 2 2334457788998754
No 150
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=88.88 E-value=0.79 Score=40.21 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCc
Q 003337 198 PLEELIDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTF 269 (828)
Q Consensus 198 ~~~~~l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~Tv 269 (828)
+.++.++++.++ .||+|+..+ +||++|+++.+.+-+. .-.|..+.|+.++.++.. .+.. ..+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~ 74 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGY 74 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSS
T ss_pred hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccC
Confidence 356667666665 577666654 8999999998776332 224555555443211222 2222 338
Q ss_pred ceEEE
Q 003337 270 PQIFV 274 (828)
Q Consensus 270 PqIfI 274 (828)
|.+++
T Consensus 75 P~~~~ 79 (82)
T PF13899_consen 75 PTFFF 79 (82)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98865
No 151
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=88.47 E-value=2.1 Score=43.53 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=40.7
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEEEech
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELVGGCD 283 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~IGG~d 283 (828)
+|||+-.. +||+.|+.+...|++. .+.|-.+|++. . .+.+.-+-.++|.+ |-+|+.|+.+-
T Consensus 85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~------~--~l~~~f~v~~vPTlllyk~G~~v~~~v 152 (175)
T cd02987 85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASA------T--GASDEFDTDALPALLVYKGGELIGNFV 152 (175)
T ss_pred EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccc------h--hhHHhCCCCCCCEEEEEECCEEEEEEe
Confidence 67665542 8999999888777554 34455555532 1 34444566788976 56999886444
Q ss_pred hhh
Q 003337 284 ILS 286 (828)
Q Consensus 284 el~ 286 (828)
-+.
T Consensus 153 G~~ 155 (175)
T cd02987 153 RVT 155 (175)
T ss_pred chH
Confidence 333
No 152
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=88.44 E-value=0.97 Score=43.23 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=34.8
Q ss_pred cCcEEEEEecC---CCCCCCCcHHHHHHHHHh----C--CCCeEEEEccCccCcHHHHHHHHHHhCCC-CcceEEE
Q 003337 209 ENKVVAFIKGS---RSAPMCGFSQKVIGILES----Q--GVDYESVDVLDEEYNNGLRETLKKYSNWP-TFPQIFV 274 (828)
Q Consensus 209 ~~~VvifsKgt---~~~~~C~~C~~ak~lL~~----~--gv~y~~idI~~~~~~~~~~~~L~~~sg~~-TvPqIfI 274 (828)
..+|+|+-.++ -..+|||.|+.+.-+|++ . ++.+-.+|+++.+.-.+....+....+-. .+|.+.+
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 35666544420 011699999988766643 3 35677778765320000112333323334 8898865
No 153
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=88.44 E-value=1.1 Score=40.01 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=35.3
Q ss_pred HHHHhhc-Cc-EEEEEecCCCCCCCCcHHHHHHHHHhCC--------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 203 IDKLVKE-NK-VVAFIKGSRSAPMCGFSQKVIGILESQG--------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 203 l~~li~~-~~-VvifsKgt~~~~~C~~C~~ak~lL~~~g--------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+++.+++ .+ ++.|.. +||+.|+++...|++.. +.+..+|.+.. ..+.+..+...+|.+
T Consensus 6 ~~~~~~~~~~~~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-------KDLASRFGVSGFPTI 73 (102)
T ss_pred HHHHhccCCcEEEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-------HHHHHhCCCCcCCEE
Confidence 3344444 33 455655 89999998776664421 34444555433 234444567889988
Q ss_pred EE
Q 003337 273 FV 274 (828)
Q Consensus 273 fI 274 (828)
++
T Consensus 74 ~~ 75 (102)
T TIGR01126 74 KF 75 (102)
T ss_pred EE
Confidence 54
No 154
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=88.37 E-value=0.39 Score=52.61 Aligned_cols=65 Identities=28% Similarity=0.409 Sum_probs=48.5
Q ss_pred CcccCCCcceeeeehhccccccceeeecCCCcccCcCCCCcceEEEEEcCCCC-eeEeechhhHHHHHhhhccc
Q 003337 51 KYTTATPRSLVIVTAVKTLSDTELVAVPLTAEEFNSKFPSETGVYAVYDKNDE-LQFVGISRNIGASVFSHLKS 123 (828)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvyav~d~~~~-lq~ig~sr~~~~Slk~h~~~ 123 (828)
+...++||..|-+++.= +.|...++..+.+|...|||..+|++|. +-|||=|+|+.--|.+|...
T Consensus 2 ~~~~~~~~~~~~~~~~~--------~~P~~L~~~l~~LP~~PGVYlf~d~~g~~~LYVGKAknLR~RV~syF~~ 67 (286)
T PRK10545 2 VRRLTSPRLEFEAAAIY--------EYPEHLRPFLEDLPKLPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRT 67 (286)
T ss_pred Cccccccccccchhhhh--------hCCHhHHHHHHhCCCCCeEEEEEcCCCCEEEEEechHhHHHHHHHHcCc
Confidence 34456677666665532 2333333445789999999999999996 59999999999999999964
No 155
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=88.23 E-value=1.1 Score=38.77 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 224 MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 224 ~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
.+|+|-++..+|+-.|++|+.+..... ..+-...+|.|..+|+.|+|++.+.+..+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~-----------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNP-----------WRSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCC-----------CCCCCCccCEEEECCEEecChHHHHHHHH
Confidence 479999999999999999987644321 12233469999999999999999888765
No 156
>PF13728 TraF: F plasmid transfer operon protein
Probab=87.62 E-value=2.1 Score=45.03 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHH----HhCCCCeEEEEccCccCc--H--HHHHHHHHHhCCCCc
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGIL----ESQGVDYESVDVLDEEYN--N--GLRETLKKYSNWPTF 269 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL----~~~gv~y~~idI~~~~~~--~--~~~~~L~~~sg~~Tv 269 (828)
.-++.|+++-++.-.++|.+ +.|++|++..-+| +++|++...|++|..... + ..-.++.+.-|-.++
T Consensus 110 ~~~~~l~~la~~~gL~~F~~-----~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~ 184 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYR-----SDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT 184 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEc-----CCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC
Confidence 34557788888889999999 5799999887776 456888888887642100 0 001223333455677
Q ss_pred ceEEE
Q 003337 270 PQIFV 274 (828)
Q Consensus 270 PqIfI 274 (828)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 77764
No 157
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=87.59 E-value=2.5 Score=37.86 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHh-hcCc-EEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 203 IDKLV-KENK-VVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 203 l~~li-~~~~-VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
+++.+ +..+ ++++--. +||+.|++....+.+. .+.+-.+|.++. ++ +.+.-+-+.+|.+++
T Consensus 10 ~~~~i~~~~~~vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~----~~~~~~i~~~P~~~~ 78 (103)
T cd03001 10 FDKKVLNSDDVWLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH---QS----LAQQYGVRGFPTIKV 78 (103)
T ss_pred HHHHHhcCCCcEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch---HH----HHHHCCCCccCEEEE
Confidence 44444 3333 5544442 8999999998777552 234555565443 23 333446788998744
No 158
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=87.33 E-value=1.6 Score=39.71 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 223 PMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
+||++|+++...+++. .+.+-.+|++.++ . ..+.+..+-.++|.+++
T Consensus 28 ~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~----~-~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 28 PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK----N-KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc----c-HHHHHHcCCCcCCEEEE
Confidence 8999999987766554 2344555665531 1 22333446788998865
No 159
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.02 E-value=1.1 Score=46.66 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhhc
Q 003337 224 MCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEKG 292 (828)
Q Consensus 224 ~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~sG 292 (828)
.||||+++...|..++++|...-||... --+.++..+....+|.+-.||+.+-..+.+++..++-
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~----kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSR----KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCC----CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHh
Confidence 4999999999999999998876665432 2345667888889999999999999888888877665
No 160
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=86.93 E-value=2.3 Score=40.39 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=37.3
Q ss_pred cCcEE-EEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcce--EEECCeEE
Q 003337 209 ENKVV-AFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ--IFVNGELV 279 (828)
Q Consensus 209 ~~~Vv-ifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq--IfI~Ge~I 279 (828)
+.+|| =|+. +|||.|+.+-.+|++.- +.+-.+|+|+. +++. +..+-...|. +|-+|+|+
T Consensus 14 ~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev---~dva----~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV---PVYT----QYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEecccc---HHHH----HhcCceeCcEEEEEECCcEE
Confidence 44544 4666 89999999988887753 44666787654 3433 3333333444 46689886
No 161
>smart00465 GIYc GIY-YIG type nucleases (URI domain).
Probab=86.66 E-value=0.8 Score=39.52 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=45.5
Q ss_pred cceEEEEEcCCCCeeEeechhhHHHHHhhhccccc---cc-----cc--cEEEeecCCCChHHHHHHHHHHHHH
Q 003337 91 ETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVP---EL-----CC--SVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 91 ~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P---~~-----c~--~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
+.|||.+.|.++...|||.+.|+.-=+++|..... .+ ++ .+.+.+++.++.. +...-..|+.+
T Consensus 1 ~~gvY~i~~~~~~~~YVG~t~nl~~R~~~h~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~E~~~i~~ 73 (84)
T smart00465 1 KPGVYYITNKKNGKLYVGKAKNLRNRLKRHFSGSRKGRLLIDALLKYGGNFEFIILESFDES-ALELEKYLIKE 73 (84)
T ss_pred CCEEEEEEECCCCEEEEEEccCHHHHHHHHHhCCCCChHHHHHHHHhcCCeEEEEeecChHh-HHHHHHHHHHh
Confidence 47999999999999999999999999999997542 11 33 4556666666543 44444555554
No 162
>PLN02473 glutathione S-transferase
Probab=86.60 E-value=2.2 Score=43.87 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.+|.. +.|++|.++.-+|+++|++|+.+.++-.+ ++....+..+..-..++|.+..||..|....-+.++..
T Consensus 3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~-~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDK-LEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcc-cccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 356755 67999999999999999999988765431 11222333345666799999889988877777776543
No 163
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=86.56 E-value=0.86 Score=48.94 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=58.3
Q ss_pred HHHHhhcCcEEEEEe-cCCCCCC-CCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEE
Q 003337 203 IDKLVKENKVVAFIK-GSRSAPM-CGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVG 280 (828)
Q Consensus 203 l~~li~~~~VvifsK-gt~~~~~-C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IG 280 (828)
.++-.+...|-+|-- .++.+|. .|||-++.-+|+..+++|+.++- .++.++...++|-|-+||++|-
T Consensus 37 hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~-----------~~~~rSr~G~lPFIELNGe~ia 105 (281)
T KOG4244|consen 37 HKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC-----------SLKRRSRNGTLPFIELNGEHIA 105 (281)
T ss_pred hhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc-----------cceeeccCCCcceEEeCCeecc
Confidence 445667777777743 2444444 78999999999999999999874 2334566779999999999999
Q ss_pred echhhhhHHh
Q 003337 281 GCDILSSMYE 290 (828)
Q Consensus 281 G~del~~l~~ 290 (828)
+.|.+..-.+
T Consensus 106 DS~~I~~~L~ 115 (281)
T KOG4244|consen 106 DSDLIEDRLR 115 (281)
T ss_pred ccHHHHHHHH
Confidence 9888776544
No 164
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=86.33 E-value=1.3 Score=41.79 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCe
Q 003337 223 PMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGE 277 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge 277 (828)
|||++|+++...+++.. +.+-.+|++.. ++ .+.+..+-.++|.+ |.+|+
T Consensus 39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~---~~---l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP---QG---KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC---hH---HHHHhcCCcccCEEEEEECCc
Confidence 89999999988887653 34556676554 22 23233455667766 55665
No 165
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=86.19 E-value=2.2 Score=39.09 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=34.3
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
+.++|+|.--. +||+.|+++...|++. ++.+-.+|.+. ..+ .+.+..+...+|.+++
T Consensus 17 ~g~~vlV~F~a----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~--~~~----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 17 REDYTAVLFYA----SWCPFSASFRPHFNALSSMFPQIRHLAIEESS--IKP----SLLSRYGVVGFPTILL 78 (100)
T ss_pred CCCEEEEEEEC----CCCHHHHhHhHHHHHHHHHhccCceEEEECCC--CCH----HHHHhcCCeecCEEEE
Confidence 34455554442 8999999999887654 34444445431 112 3444556788997754
No 166
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=86.18 E-value=1.4 Score=45.23 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=49.2
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.|++|.++.-+|..+|++|+.+.++....+......+.+.+-..++|.+..||+.+-....+.....
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 56999999999999999999998876311001122345566777899999998887766666666543
No 167
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=85.93 E-value=2.1 Score=38.22 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCCCcHHHHHHHHHhC----C--CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 223 PMCGFSQKVIGILESQ----G--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~----g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
+||+.|+++...+.+. . -.+....++.+...++ +.+..+-.++|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~ 81 (105)
T cd02998 28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF 81 (105)
T ss_pred CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence 8999999888777542 2 1244444433321123 333345678998865
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=85.85 E-value=3.1 Score=42.72 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=24.1
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHh--CCCCeEEE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILES--QGVDYESV 245 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~--~gv~y~~i 245 (828)
+..+++|+. +.||||+++.+.+.+ .++.+..+
T Consensus 78 ~~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 78 KRVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred CEEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEE
Confidence 346888888 999999999999974 34544444
No 169
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=84.60 E-value=2.4 Score=46.19 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=28.4
Q ss_pred HHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHH----hCCCCeEEEEccCc
Q 003337 202 LIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILE----SQGVDYESVDVLDE 250 (828)
Q Consensus 202 ~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~----~~gv~y~~idI~~~ 250 (828)
.++++..+..++.|.. +||++|++..-+|+ ++|+.+..+++|..
T Consensus 160 ~l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~ 207 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGG 207 (271)
T ss_pred HHHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCC
Confidence 4445444434444555 79999998877664 45777777777654
No 170
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=83.58 E-value=2.3 Score=40.93 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCeEEEEccCcc----CcHHHHHHHHHHhCCCCcceEEECCeEE--EechhhhhH
Q 003337 229 QKVIGILESQGVDYESVDVLDEE----YNNGLRETLKKYSNWPTFPQIFVNGELV--GGCDILSSM 288 (828)
Q Consensus 229 ~~ak~lL~~~gv~y~~idI~~~~----~~~~~~~~L~~~sg~~TvPqIfI~Ge~I--GG~del~~l 288 (828)
..+.+.|++.|++...+++..++ .++.+++.|++ .|...+|.++|||+.+ |.|-...++
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCHHHH
Confidence 35678889999999999998876 45667777764 5788999999999976 666555554
No 171
>PTZ00062 glutaredoxin; Provisional
Probab=83.27 E-value=4.3 Score=42.51 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHHHhh--cCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCC---eEEEEccCccCcHHHHHHHHHHhCCCCcceE--E
Q 003337 201 ELIDKLVK--ENKVVAFIKGSRSAPMCGFSQKVIGILESQGVD---YESVDVLDEEYNNGLRETLKKYSNWPTFPQI--F 273 (828)
Q Consensus 201 ~~l~~li~--~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~---y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--f 273 (828)
+.+.++++ ...+|+|... +|||.|+.+..+|.+.--+ +..+.|+.+ .+-..+|.+ |
T Consensus 7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~ 69 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFY 69 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEE
Confidence 33555666 4566666652 8999999999999876433 333344322 455678855 4
Q ss_pred ECCeEEEech
Q 003337 274 VNGELVGGCD 283 (828)
Q Consensus 274 I~Ge~IGG~d 283 (828)
=||+.|+.++
T Consensus 70 ~~g~~i~r~~ 79 (204)
T PTZ00062 70 QNSQLINSLE 79 (204)
T ss_pred ECCEEEeeee
Confidence 5888876554
No 172
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=82.71 E-value=6.1 Score=41.97 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHhC----C--CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeEE
Q 003337 223 PMCGFSQKVIGILESQ----G--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGELV 279 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~----g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~I 279 (828)
|||+.|+++...+++. + +.+..+|.+.. + .+.+..+-.++|.++ -+|+.+
T Consensus 62 pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~---~----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 62 PWCSHCRKMAPAWERLAKALKGQVNVADLDATRA---L----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc---H----HHHHHcCCCcCCEEEEEECCEEE
Confidence 8999999998887653 2 33444454332 2 344445677888774 478765
No 173
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=82.30 E-value=4.5 Score=48.72 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhc-CcEEEEEecCCCCCCCCcHHHHHHH-H------Hh-CCCCeEEEEccCccCcHHHHHHHHHHhCCC
Q 003337 197 VPLEELIDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIGI-L------ES-QGVDYESVDVLDEEYNNGLRETLKKYSNWP 267 (828)
Q Consensus 197 ~~~~~~l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~l-L------~~-~gv~y~~idI~~~~~~~~~~~~L~~~sg~~ 267 (828)
++.++.+++..++ ++|+|+--. +||+.|+..+.. + ++ .++.+-.+|+++++ ++.++ +.+..+..
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~~~~~-l~~~~~v~ 533 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--AEDVA-LLKHYNVL 533 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--hhhHH-HHHHcCCC
Confidence 4566777766554 567664442 899999988654 2 12 23445566776542 34343 44445778
Q ss_pred CcceEEE
Q 003337 268 TFPQIFV 274 (828)
Q Consensus 268 TvPqIfI 274 (828)
.+|.+++
T Consensus 534 g~Pt~~~ 540 (571)
T PRK00293 534 GLPTILF 540 (571)
T ss_pred CCCEEEE
Confidence 8998854
No 174
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=82.29 E-value=6.6 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=37.9
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh---CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES---QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~---~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
+.++++|+-.. +|||.|++....|.+ .++++-.++++++ ..+.++.+++. + -++|.+..|.
T Consensus 67 ~gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~--~~~~~~~~~~~-~-~~~~~~~~D~ 130 (185)
T PRK15412 67 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDD--RQKAISWLKEL-G-NPYALSLFDG 130 (185)
T ss_pred CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCC--HHHHHHHHHHc-C-CCCceEEEcC
Confidence 56667766554 799999997766544 4666656665443 24566666653 3 3577655554
No 175
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=81.85 E-value=2 Score=40.32 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHhhcC--cEEEEEecCCCCCCCCcHHHHHHHHHhCC---------CCeEEEEccCccCcHHHHHHHHHHhCCCCcce
Q 003337 203 IDKLVKEN--KVVAFIKGSRSAPMCGFSQKVIGILESQG---------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ 271 (828)
Q Consensus 203 l~~li~~~--~VvifsKgt~~~~~C~~C~~ak~lL~~~g---------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq 271 (828)
+++.+.++ +|+|+-.. +||+.|+.+...+++.. +.+-.+|.+.+ .. ..+.+.-+...+|.
T Consensus 11 f~~~i~~~~~~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~----~~-~~~~~~~~i~~~Pt 81 (114)
T cd02992 11 FNSALLGSPSAWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE----EN-VALCRDFGVTGYPT 81 (114)
T ss_pred HHHHHhcCCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch----hh-HHHHHhCCCCCCCE
Confidence 44555443 56655543 89999999988876542 22333443332 11 23334446678898
Q ss_pred EEE
Q 003337 272 IFV 274 (828)
Q Consensus 272 IfI 274 (828)
+++
T Consensus 82 ~~l 84 (114)
T cd02992 82 LRY 84 (114)
T ss_pred EEE
Confidence 865
No 176
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=81.52 E-value=10 Score=35.61 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=44.3
Q ss_pred hhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCC-CCcceEEE--CCe
Q 003337 207 VKENKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNW-PTFPQIFV--NGE 277 (828)
Q Consensus 207 i~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~-~TvPqIfI--~Ge 277 (828)
-+..|++||=-+ ..||-+.+|.+-|++. .+++-.+||... .++-..+.+..|- -.-||+++ ||+
T Consensus 17 S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V~HeSPQ~ili~~g~ 89 (105)
T PF11009_consen 17 SKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGVKHESPQVILIKNGK 89 (105)
T ss_dssp ---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT----SSEEEEEETTE
T ss_pred cccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCCCcCCCcEEEEECCE
Confidence 346799999886 4899999999877543 288999999776 6788888877764 35799965 888
Q ss_pred EE
Q 003337 278 LV 279 (828)
Q Consensus 278 ~I 279 (828)
.|
T Consensus 90 ~v 91 (105)
T PF11009_consen 90 VV 91 (105)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 177
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.31 E-value=5 Score=39.35 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=54.4
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEec---hhhh
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGC---DILS 286 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~---del~ 286 (828)
..+++|-. |.|+=|..-.+.|+..|.+.+.++.++- ..+++.|.-.....+-=...|||.+|=|. +++.
T Consensus 26 ~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 26 TEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred eeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHH
Confidence 45677755 9999999999999999999988887654 34454443222334566788999999886 5666
Q ss_pred hHHhhc
Q 003337 287 SMYEKG 292 (828)
Q Consensus 287 ~l~~sG 292 (828)
.|.+++
T Consensus 98 ~ll~~~ 103 (149)
T COG3019 98 RLLAEK 103 (149)
T ss_pred HHHhCC
Confidence 666655
No 178
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=81.26 E-value=4.2 Score=40.27 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=34.0
Q ss_pred HhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC------------CCCeEEEEccCccCcHHHHHHHHHH
Q 003337 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ------------GVDYESVDVLDEEYNNGLRETLKKY 263 (828)
Q Consensus 206 li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------------gv~y~~idI~~~~~~~~~~~~L~~~ 263 (828)
..+.++|+|+-.. +|||.|++..-.|.+. +-.++.+-|..++...+.++.++++
T Consensus 22 ~~kgk~vlL~FwA----sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~ 87 (146)
T cd03008 22 RLENRVLLLFFGA----VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM 87 (146)
T ss_pred HhCCCEEEEEEEC----CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence 3466788887774 7999999998888651 1135555554443334566666653
No 179
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=81.17 E-value=5.6 Score=39.95 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC---CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 205 KLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ---GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 205 ~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~---gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
...+.++++++-.+ +|||.|++....|++. ++.+-.+++++. ..+.++.+++. + -.+|.+..|.
T Consensus 59 ~~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~--~~~~~~~~~~~-~-~~f~~v~~D~ 125 (173)
T TIGR00385 59 AFIQGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ--SQNALKFLKEL-G-NPYQAILIDP 125 (173)
T ss_pred HhcCCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCCC--hHHHHHHHHHc-C-CCCceEEECC
Confidence 34456667766664 7999999987666543 555555555432 24455666554 3 3566655543
No 180
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=80.90 E-value=4.9 Score=35.22 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+..++|.++.-+|+..|++|+.++....+ . .+....+|.+-+||+.|+...-+.++..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~---~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE---F-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc---c-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 35788999999999999999998653211 0 1112579999999999988877776543
No 181
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=4.3 Score=45.53 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=64.5
Q ss_pred CCCCCChhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcc
Q 003337 191 HNVQLTVPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFP 270 (828)
Q Consensus 191 ~~~~~~~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvP 270 (828)
+++....++-+.++.+-..-..--|.. -+|..||.-.+|.+++.-.+-..+..-||.. -.+++... -+--.||
T Consensus 99 ~ppk~~q~vieqik~i~g~~~FETy~S--ltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evea-r~IMaVP 171 (520)
T COG3634 99 HPPKEDQDVIEQIKAIDGDFHFETYFS--LTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEA-RNIMAVP 171 (520)
T ss_pred CCCchhHHHHHHHHhcCCceeEEEEEE--eeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHh-ccceecc
Confidence 334445566666776666656655544 2577888888888888888888887777543 55666654 3557899
Q ss_pred eEEECCeEEEe----chhhhhHHhhc
Q 003337 271 QIFVNGELVGG----CDILSSMYEKG 292 (828)
Q Consensus 271 qIfI~Ge~IGG----~del~~l~~sG 292 (828)
.||+||+..|. .+++.+-...|
T Consensus 172 tvflnGe~fg~GRmtleeilaki~~g 197 (520)
T COG3634 172 TVFLNGEEFGQGRMTLEEILAKIDTG 197 (520)
T ss_pred eEEEcchhhcccceeHHHHHHHhcCC
Confidence 99999998863 45555555555
No 182
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=80.18 E-value=5.1 Score=43.42 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHH----HhCCCCeEEEEccCc
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGIL----ESQGVDYESVDVLDE 250 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL----~~~gv~y~~idI~~~ 250 (828)
.-++.|+++-++..+++|.+ +.||+|++.--+| +++|++...|++|..
T Consensus 140 ~~~~~i~~la~~~gL~fFy~-----~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYR-----GKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred HHHHHHHHHHhceeEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 34567888888999999999 5799999987766 557888888887653
No 183
>TIGR01453 grpIintron_endo group I intron endonuclease. This model represents one subfamily of endonucleases containing the endo/excinuclease amino terminal domain, Pfam:PF01541 at its amino end. A distinct subfamily includes excinuclease abc subunit c (uvrC). Members of pfam01541 are often termed GIY-YIG endonucleases after conserved motifs near the amino end. This subfamily in this model is found in open reading frames of group I introns in both phage and mitochondria. The closely related endonucleases of phage T4: segA, segB, segC, segD and segE, score below the trusted cutoff for the family.
Probab=79.83 E-value=18 Score=38.05 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=50.3
Q ss_pred cceEEEEEcCCCCeeEeechhhHHHHHhhhcccc----c-cc--------cccEEEeecCC-CChHHHHHHHHHHHHH
Q 003337 91 ETGVYAVYDKNDELQFVGISRNIGASVFSHLKSV----P-EL--------CCSVKVGVVDD-PDRTALTQAWKSWMEE 154 (828)
Q Consensus 91 ~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~----P-~~--------c~~~kv~~vd~-p~r~~L~~~~~~w~~e 154 (828)
++|||.|.+....-.|||-|+|+.-=+++|.... + .+ -....+++++. -+..+|...-+.||++
T Consensus 1 ~~GIY~i~n~~ngk~YIGss~nl~~R~~~h~~~~~~~~~~~l~~ai~kyG~~nF~~~ile~~~~~~~l~~lE~~~I~~ 78 (214)
T TIGR01453 1 KSGIYKITNNINGKIYVGSSVNLEKRLKEHLKLLKKGNRIKLQKALNKYGWSNFSFEILEYYCNKDDLIERETYYIKL 78 (214)
T ss_pred CCEEEEEEECCCCcEEEEeccCHHHHHHHHHHHHhcCChHHHHHHHHHhChHheEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 4799999997666789999999999999998652 2 22 12477788885 5678888888899986
No 184
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.69 E-value=1.9 Score=43.88 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE-ECCeEEEechhhhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF-VNGELVGGCDILSS 287 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf-I~Ge~IGG~del~~ 287 (828)
..||||.||..++--++++++.+-++.|++.. =..+-|...||.+- -+|+..+-.=|+..
T Consensus 7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-----p~rmiG~KqVPiL~Kedg~~m~ESlDIV~ 67 (215)
T COG2999 7 DHCPFCVRARMIFGLKNIPVELHVLLNDDEET-----PIRMIGQKQVPILQKEDGRAMPESLDIVH 67 (215)
T ss_pred ccChHHHHHHHHhhccCCChhhheeccCcccC-----hhhhhcccccceEEccccccchhhhHHHH
Confidence 67999999999999999999988777664222 22466889999885 36777755444433
No 185
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=79.50 E-value=6.1 Score=35.29 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=30.1
Q ss_pred CCCCcHHHHHHHHHhC--------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE--ECCeEE
Q 003337 223 PMCGFSQKVIGILESQ--------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF--VNGELV 279 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~--------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf--I~Ge~I 279 (828)
+||+.|+++...+.+. .+.+-.+|.+.+ ++++ +.+..+-.++|.+. -+|+.+
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDA----LKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHH----HHHhCCCccccEEEEEeCCCee
Confidence 8999999997555332 234555566542 1233 33334667888774 355543
No 186
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=79.24 E-value=6 Score=37.43 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=29.6
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC---------CCCeEEEEccCccCcHHHHHHHHH
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ---------GVDYESVDVLDEEYNNGLRETLKK 262 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~---------gv~y~~idI~~~~~~~~~~~~L~~ 262 (828)
+.++|+|+-.. +||+.|++....|.+. ++++-.++++.. ..+.++.+++
T Consensus 17 ~gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~ 74 (131)
T cd03009 17 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD--EESFNDYFSK 74 (131)
T ss_pred CCcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC--HHHHHHHHHc
Confidence 45677777764 7999999877766432 334444555543 2445555544
No 187
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=78.93 E-value=6.9 Score=34.06 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=45.2
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHH--HhCCCCcceEEECCeEEEechhhhhHH
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKK--YSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~--~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
.+|.. +.++-|.++.-+|++.|++|+.+.++.. ++.. .++. +.....+|.+.+||..+....-+..+.
T Consensus 3 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 3 VLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESA---EDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred EEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccH---HHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 45655 5678889999999999999999887542 1211 1111 112458999988987776555555443
No 188
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=78.35 E-value=11 Score=39.05 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHHhhc---CcEEE-EEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcc
Q 003337 200 EELIDKLVKE---NKVVA-FIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFP 270 (828)
Q Consensus 200 ~~~l~~li~~---~~Vvi-fsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvP 270 (828)
++..+++.++ .+||| |.. +||+.|+.+...|++. .+.|-.+|++. . .+..+-..+|
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya-----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~------~----~~~~~i~~lP 154 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYK-----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQ------C----IPNYPDKNLP 154 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH------h----HhhCCCCCCC
Confidence 3445555543 24655 555 8999999998888665 34565666532 1 2334667899
Q ss_pred eE--EECCeEEEechhhhhH
Q 003337 271 QI--FVNGELVGGCDILSSM 288 (828)
Q Consensus 271 qI--fI~Ge~IGG~del~~l 288 (828)
.+ |-||+.|+-+--+..+
T Consensus 155 Tlliyk~G~~v~~ivG~~~~ 174 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEF 174 (192)
T ss_pred EEEEEECCEEEEEEeCchhh
Confidence 87 5589877555444443
No 189
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=77.97 E-value=9.9 Score=35.64 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=34.7
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG 276 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G 276 (828)
+.++++|+--+ +|||.|.+....|++. ++.+-.+++++ ...+.++.+++. +. .+|.+.++.
T Consensus 24 ~gk~vvv~F~a----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~--~~~~~~~~~~~~-~~-~~~~~~~D~ 88 (127)
T cd03010 24 KGKPYLLNVWA----SWCAPCREEHPVLMALARQGRVPIYGINYKD--NPENALAWLARH-GN-PYAAVGFDP 88 (127)
T ss_pred CCCEEEEEEEc----CcCHHHHHHHHHHHHHHHhcCcEEEEEECCC--CHHHHHHHHHhc-CC-CCceEEECC
Confidence 35565555453 7999999988777654 34444444432 234555555543 32 456666653
No 190
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=77.76 E-value=4.7 Score=37.51 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhc-CcEEEEEecCCCCCCCCcHHHHHH-HHHhCCC------CeEEEEccCccCcHHHHHHHHHHhCCCCc
Q 003337 198 PLEELIDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIG-ILESQGV------DYESVDVLDEEYNNGLRETLKKYSNWPTF 269 (828)
Q Consensus 198 ~~~~~l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~-lL~~~gv------~y~~idI~~~~~~~~~~~~L~~~sg~~Tv 269 (828)
+.++.++++.++ ++++||.-+ ++|++|++..+ +|.+..+ .|..+-++..+ ++.. .+.+..+...+
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~e~~-~~~~~~~~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--SEGQ-RFLQSYKVDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--ccHH-HHHHHhCccCC
Confidence 456777777776 567788775 89999999864 5544433 24444333321 2333 34444566788
Q ss_pred ceEE
Q 003337 270 PQIF 273 (828)
Q Consensus 270 PqIf 273 (828)
|.+.
T Consensus 78 P~~~ 81 (114)
T cd02958 78 PHIA 81 (114)
T ss_pred CeEE
Confidence 8884
No 191
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=77.71 E-value=6.1 Score=39.03 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=24.1
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCc
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDE 250 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~ 250 (828)
+-|.. +||+.|+.+-.+|++.- +.+-.+|||+.
T Consensus 28 vdF~A-----~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~ 66 (142)
T PLN00410 28 IRFGH-----DWDETCMQMDEVLASVAETIKNFAVIYLVDITEV 66 (142)
T ss_pred EEEEC-----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC
Confidence 45666 89999999988887653 33466788765
No 192
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=77.18 E-value=6.7 Score=34.94 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=33.5
Q ss_pred HHHHhhc--CcEEEEEecCCCCCCCCcHHHHHHHHHhCC--------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 203 IDKLVKE--NKVVAFIKGSRSAPMCGFSQKVIGILESQG--------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 203 l~~li~~--~~VvifsKgt~~~~~C~~C~~ak~lL~~~g--------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
.++.+.+ .+++|+--+ +||++|+++...+++.. +.+..+|.+.. + +....+-.++|.+
T Consensus 10 f~~~i~~~~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~----~~~~~~~~~~Pt~ 77 (104)
T cd02995 10 FDEVVLDSDKDVLVEFYA----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----D----VPSEFVVDGFPTI 77 (104)
T ss_pred hHHHHhCCCCcEEEEEEC----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----h----hhhhccCCCCCEE
Confidence 3444433 355554442 89999999888775542 33344454332 2 2222344789988
Q ss_pred EE
Q 003337 273 FV 274 (828)
Q Consensus 273 fI 274 (828)
++
T Consensus 78 ~~ 79 (104)
T cd02995 78 LF 79 (104)
T ss_pred EE
Confidence 65
No 193
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=76.51 E-value=7.8 Score=41.79 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHH----HhCCCCeEEEEccC
Q 003337 199 LEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGIL----ESQGVDYESVDVLD 249 (828)
Q Consensus 199 ~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL----~~~gv~y~~idI~~ 249 (828)
-++.|+++.++..++.|.+ +.||+|++.--+| +++|++...+.+|.
T Consensus 134 ~~~~i~~la~~~GL~fFy~-----s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYR-----GQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred HHHHHHHHHhcceEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4557888889999999999 5699999977666 45677777777764
No 194
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=75.80 E-value=8 Score=45.39 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=34.4
Q ss_pred cCcEEE-EEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 209 ENKVVA-FIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 209 ~~~Vvi-fsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
..+|+| |.. |||++|+.+...|++. ++.+-.+|++.++ .+.+.+..+-.++|.+.+
T Consensus 371 ~k~VLV~FyA-----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~-----~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 371 KEAWLVVLYA-----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ-----KEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCeEEEEEEC-----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc-----cHHHHHHcCCCccceEEE
Confidence 344554 544 8999999998877554 3556667877542 122223345667887743
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=75.68 E-value=6.8 Score=33.87 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=37.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccC--------------------cHHHHHH-----H
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEY--------------------NNGLRET-----L 260 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~--------------------~~~~~~~-----L 260 (828)
|++|.. +.||+|..+...|++. ++.+..+.+.-... ..++.+. +
T Consensus 1 i~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (98)
T cd02972 1 IVEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTAL 75 (98)
T ss_pred CeEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 356666 8999999999998774 35555555433321 0111111 1
Q ss_pred HHHhCCCCcceEEECC
Q 003337 261 KKYSNWPTFPQIFVNG 276 (828)
Q Consensus 261 ~~~sg~~TvPqIfI~G 276 (828)
.+..|-..+|.++++|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 2234668899999999
No 196
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=75.62 E-value=5.8 Score=40.06 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHH-HHHhCCC------CeEEEEccCccCcHHHHHHH----HHHhCCCC
Q 003337 200 EELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIG-ILESQGV------DYESVDVLDEEYNNGLRETL----KKYSNWPT 268 (828)
Q Consensus 200 ~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~-lL~~~gv------~y~~idI~~~~~~~~~~~~L----~~~sg~~T 268 (828)
++.++++-++++-|+.+-|+ ++|.+|+.+.+ .+++..| .|..|-||.+ +.|++.... ..++|...
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDre-e~Pdid~~y~~~~~~~~~~gG 102 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDRE-ERPDIDKIYMNAVQAMSGSGG 102 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETT-T-HHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccc-cCccHHHHHHHHHHHhcCCCC
Confidence 45577777776666555555 79999997764 4444333 4666666654 235554433 23445566
Q ss_pred cceE-EE--CCeEEEec
Q 003337 269 FPQI-FV--NGELVGGC 282 (828)
Q Consensus 269 vPqI-fI--~Ge~IGG~ 282 (828)
+|.. |+ +|+++-|.
T Consensus 103 wPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 103 WPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp SSEEEEE-TTS-EEEEE
T ss_pred CCceEEECCCCCeeeee
Confidence 6654 44 67777443
No 197
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=75.60 E-value=11 Score=35.76 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=29.7
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------C--CCCeEEEEccCccCcHHHHHHHHHH
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES-------Q--GVDYESVDVLDEEYNNGLRETLKKY 263 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~--gv~y~~idI~~~~~~~~~~~~L~~~ 263 (828)
+.+.|+|+-.+ +||+.|++....|.+ . ++..-.++++.. ..++++.++++
T Consensus 16 ~Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~--~~~~~~~~~~~ 74 (132)
T cd02964 16 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS--EESFNEYFSEM 74 (132)
T ss_pred CCCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC--HHHHHHHHhcC
Confidence 34666666654 799999997766543 2 333444455443 34566666654
No 198
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.46 E-value=6.3 Score=40.51 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=48.9
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCe-EEEechhhhhHHh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGE-LVGGCDILSSMYE 290 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge-~IGG~del~~l~~ 290 (828)
+.||+|.++.-.|.++|++|+.+.|+... ....+.+..++-...||.+-.+|- .+-....+.++.+
T Consensus 7 ~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 7 PTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHH
Confidence 66799999999999999999999887753 234456667777789999988763 4544444444433
No 199
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=4.6 Score=37.83 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=39.8
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCC-----eEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCe----E
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVD-----YESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGE----L 278 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~-----y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge----~ 278 (828)
..||++-.+ +|||.|+.+.=++.+.-.+ |-.+|+|+ . +.+.+.-+-.++|.+ +-+|+ +
T Consensus 22 kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde------~-~~~~~~~~V~~~PTf~f~k~g~~~~~~ 90 (106)
T KOG0907|consen 22 KLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE------L-EEVAKEFNVKAMPTFVFYKGGEEVDEV 90 (106)
T ss_pred CeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc------C-HhHHHhcCceEeeEEEEEECCEEEEEE
Confidence 565664432 7999999999888776444 55667754 2 233333466788887 44664 4
Q ss_pred EEechh
Q 003337 279 VGGCDI 284 (828)
Q Consensus 279 IGG~de 284 (828)
+|+-.+
T Consensus 91 vGa~~~ 96 (106)
T KOG0907|consen 91 VGANKA 96 (106)
T ss_pred ecCCHH
Confidence 555443
No 200
>PLN02309 5'-adenylylsulfate reductase
Probab=75.17 E-value=7.7 Score=45.46 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 223 PMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
|||++|++++..+++. ++.+-.+|++.++ . +...+.-+-.++|.+++
T Consensus 375 pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~---~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 375 PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--K---EFAKQELQLGSFPTILL 428 (457)
T ss_pred CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--h---HHHHhhCCCceeeEEEE
Confidence 8999999988877554 3555666665221 1 22222346678888854
No 201
>PRK10357 putative glutathione S-transferase; Provisional
Probab=72.81 E-value=6.9 Score=39.86 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILS 286 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~ 286 (828)
+.||+++++.-+|+..|++|+.++++.... ...+.+++-..++|.+.. +|..+-....+.
T Consensus 7 ~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~----~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~ 67 (202)
T PRK10357 7 YTSPFVRKISILLLEKGITFEFVNELPYNA----DNGVAQYNPLGKVPALVTEEGECWFDSPIIA 67 (202)
T ss_pred CCCchHHHHHHHHHHcCCCCeEEecCCCCC----chhhhhcCCccCCCeEEeCCCCeeecHHHHH
Confidence 679999999999999999999988865321 123445566779999985 565443333333
No 202
>PLN02395 glutathione S-transferase
Probab=72.49 E-value=12 Score=38.53 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=50.3
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+.+|.. +.| .|.++.-+|.++|++|+.+.++... +....+++.+.+-..++|.+..+|..+-....+.++..
T Consensus 3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMK-GEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEecccc-CCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 567754 454 4899999999999999998876431 11223456667777799999888876766666666544
No 203
>PTZ00102 disulphide isomerase; Provisional
Probab=72.20 E-value=15 Score=42.70 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCC--------CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQG--------VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~g--------v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
++|+|+--. +||+.|+++...|++.. +.+..+|.+..+ . ..+.-+.+.+|.+++
T Consensus 376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~---~----~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE---T----PLEEFSWSAFPTILF 437 (477)
T ss_pred CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc---c----chhcCCCcccCeEEE
Confidence 457666653 89999999988876542 234455655432 1 222335677888744
No 204
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=71.90 E-value=9.8 Score=33.66 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=33.3
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
.++++++.-+ ++|+.|++....|.+. ++.+..++++.+ ..+++++.+.+.. ..+|.+
T Consensus 19 ~k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~-~~~~~~~~~~~~~--~~~~~~ 82 (116)
T cd02966 19 GKVVLVNFWA----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD-DPAAVKAFLKKYG--ITFPVL 82 (116)
T ss_pred CCEEEEEeec----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC-CHHHHHHHHHHcC--CCcceE
Confidence 4556555553 7999999877666543 344555666553 1356666666543 444543
No 205
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=71.40 E-value=11 Score=43.35 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=39.2
Q ss_pred HHHHHhhcCc-E-EEEEecCCCCCCCCcHHHHHHHHH-------hCC--CCeEEEEccCccCcHHHHHHHHHHhCCCCcc
Q 003337 202 LIDKLVKENK-V-VAFIKGSRSAPMCGFSQKVIGILE-------SQG--VDYESVDVLDEEYNNGLRETLKKYSNWPTFP 270 (828)
Q Consensus 202 ~l~~li~~~~-V-vifsKgt~~~~~C~~C~~ak~lL~-------~~g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvP 270 (828)
.+++++++++ + |.|.. +||++|+++...+. ..+ +.+..+|.+.. + .+.+..+-.++|
T Consensus 10 ~~~~~i~~~~~~~v~f~a-----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P 77 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYA-----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE---K----DLAQKYGVSGYP 77 (462)
T ss_pred HHHHHHhcCCCEEEEEEC-----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc---H----HHHHhCCCcccc
Confidence 3555666654 3 44544 89999999875553 234 55566665443 2 333445677899
Q ss_pred eEE--ECCeE
Q 003337 271 QIF--VNGEL 278 (828)
Q Consensus 271 qIf--I~Ge~ 278 (828)
.++ -+|+.
T Consensus 78 t~~~~~~g~~ 87 (462)
T TIGR01130 78 TLKIFRNGED 87 (462)
T ss_pred EEEEEeCCcc
Confidence 874 45654
No 206
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.24 E-value=7.9 Score=37.11 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhhcCcEEEEEecCC----CCCCCCcHHHHHHHHHh----C--CCCeEEEEccCc
Q 003337 197 VPLEELIDKLVKENKVVAFIKGSR----SAPMCGFSQKVIGILES----Q--GVDYESVDVLDE 250 (828)
Q Consensus 197 ~~~~~~l~~li~~~~VvifsKgt~----~~~~C~~C~~ak~lL~~----~--gv~y~~idI~~~ 250 (828)
++.++.++..-+...+.++--|+. -.+|||.|.+|.-+..+ . ++.+..+++.+.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 467777777767766665555443 45899999999866543 2 344666676543
No 207
>PRK07883 hypothetical protein; Validated
Probab=70.82 E-value=3.6 Score=49.40 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=37.4
Q ss_pred ccCcCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhccc
Q 003337 83 EFNSKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKS 123 (828)
Q Consensus 83 ~~~~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~ 123 (828)
+....+|...|||-.+|++|++-|||=++|+.--+++|...
T Consensus 209 ~~~~~lP~~PGVY~~~d~~g~viYVGKAknLr~Rv~sYF~~ 249 (557)
T PRK07883 209 HLADGLPHAPGVYLFRGPSGEVLYVGTAVNLRRRVRSYFTA 249 (557)
T ss_pred HHHhhCCCCceEEEEECCCCcEEEeehhhhHHHHHHHHcCC
Confidence 33478999999999999999999999999999999999974
No 208
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=70.27 E-value=9 Score=35.00 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=33.5
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhCC----CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQG----VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~g----v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+.++++|+-.+ +|||.|++....|++.. -....+-+. +++.++.++.++++ +...+|.++
T Consensus 20 ~gk~vvl~F~~----~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~-~~~~~p~~~ 83 (114)
T cd02967 20 PGRPTLLFFLS----PTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKH-GLEAFPYVL 83 (114)
T ss_pred CCCeEEEEEEC----CCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHh-CCCCCcEEe
Confidence 35667666664 79999999877776532 123333332 22223444555543 444578664
No 209
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=69.64 E-value=21 Score=36.54 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=28.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHH----HhCCCCeEEEEccCccCcHHHHHHHHH
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGIL----ESQGVDYESVDVLDEEYNNGLRETLKK 262 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL----~~~gv~y~~idI~~~~~~~~~~~~L~~ 262 (828)
+.+++++|-.+ +|||.|++....+ ++.++++..+..++. ++.++.+++
T Consensus 73 ~gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~---~~~~~~~~~ 124 (189)
T TIGR02661 73 PGRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTP---AEHRRFLKD 124 (189)
T ss_pred CCCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCH---HHHHHHHHh
Confidence 45666665553 7999999876555 444666655553222 345555544
No 210
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=68.77 E-value=13 Score=36.99 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=26.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh----CCCCeEEEEccCc
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES----QGVDYESVDVLDE 250 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~----~gv~y~~idI~~~ 250 (828)
.+..++.|-. +|||+|++..-.|++ .++.+..++++..
T Consensus 50 ~~~~lvnFWA-----sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQ-----STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 3445666666 799999998877754 4666666676543
No 211
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=68.43 E-value=4.9 Score=48.71 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=49.7
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccccc------c-cccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVPE------L-CCSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P~------~-c~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|.+.|||-.+|++|++=|||=++|+.--|++|...... + -.-..++.+.-++..+--=.-..||.+
T Consensus 9 ~~lP~~PGVY~~~d~~g~viYVGKAknLr~Rv~sYF~~~~~~~k~~~lv~~i~~ie~i~t~sE~eALlLE~~LIK~ 84 (598)
T PRK00558 9 KTLPDSPGVYRMKDANGTVIYVGKAKNLKNRVRSYFRKSHDSPKTRAMVSEIADIEYIVTRSETEALLLENNLIKK 84 (598)
T ss_pred hhCCCCCeEEEEECCCCCEEEecCchhHHHHHHhhCCCCCcChHHHHHHHhcCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999974321 1 223455555555433333333556665
No 212
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=67.31 E-value=5.8 Score=47.77 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=49.5
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccc-----ccccc-cEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSV-----PELCC-SVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~-----P~~c~-~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|.+.|||-.+|++|++-|||=++|+.-=+++|.... +.++. -..|+.+.-++..+--=.-..||.+
T Consensus 6 ~~lP~~PGVYl~~d~~g~viYVGKAknLr~Rv~sYF~~~~~~K~~~mv~~i~~ie~ivt~sE~eALlLE~~lIK~ 80 (574)
T TIGR00194 6 KNLPDKPGCYLMKDRNGQVLYVGKAKNLKKRVSSYFRENNSAKTQALVKQIADIEYILTKNENEALILEANLIKQ 80 (574)
T ss_pred hhCCCCCeEEEEECCCCCEEEEecHHHHHHHHHHhcCCCCCchHHHHHHhcCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999632 11222 3455655555443333333566665
No 213
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=66.54 E-value=13 Score=45.22 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=50.6
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccccc-------cc-ccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVPE-------LC-CSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P~-------~c-~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|...|||-.+|++|++=|||=++|+.--|++|...... ++ .-..++.+.-++..+--=....+|.+
T Consensus 17 ~~lP~~PGVYl~~d~~g~viYVGKAknLr~RV~sYF~~~~~~~~K~~~lv~~i~~ie~i~t~sE~EALlLE~~LIk~ 93 (621)
T PRK14671 17 ASLPTSPGVYQFKNAAGRVIYVGKAKNLRNRVRSYFRNSRQLSGKTLVLVGHIADLEVIITSSEVEALILENNLIKE 93 (621)
T ss_pred HhCCCCCeEEEEECCCCCEEEeecchhHHHHHHHHcCCCCCCChHHHHHHHhhceEEEEEeCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999974322 22 34566666665444333334556654
No 214
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=63.69 E-value=7.2 Score=37.39 Aligned_cols=74 Identities=12% Similarity=0.251 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhc-CcEEEEEecCC---CCCCCCcHHHHHHHH----HhC--CCCeEEEEccCccCcHHHHH---HHHH--
Q 003337 198 PLEELIDKLVKE-NKVVAFIKGSR---SAPMCGFSQKVIGIL----ESQ--GVDYESVDVLDEEYNNGLRE---TLKK-- 262 (828)
Q Consensus 198 ~~~~~l~~li~~-~~VvifsKgt~---~~~~C~~C~~ak~lL----~~~--gv~y~~idI~~~~~~~~~~~---~L~~-- 262 (828)
+.++.+++..++ .++.||-.|+. ..+|||.|.+|.-++ +.. +..+.++.|.+. ++.++ ..+.
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r---~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDR---PEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---H---HHHC-TTSHHHH--
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCH---HHhCCCCCCceEcc
Confidence 445556554433 56666655554 458899999998554 443 334556666432 22221 1222
Q ss_pred HhCCCCcceEEE
Q 003337 263 YSNWPTFPQIFV 274 (828)
Q Consensus 263 ~sg~~TvPqIfI 274 (828)
...-..+|.+.-
T Consensus 84 ~~~l~~IPTLi~ 95 (119)
T PF06110_consen 84 DLKLKGIPTLIR 95 (119)
T ss_dssp CC---SSSEEEE
T ss_pred eeeeeecceEEE
Confidence 123467898863
No 215
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=63.26 E-value=7.3 Score=47.62 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=50.5
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhccccc----c---cc-ccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVP----E---LC-CSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P----~---~c-~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|...|||-.+|++|++=|||=++|+.--|.+|....+ . ++ .-..++.+.-++..+--=.-..+|.+
T Consensus 7 ~~LP~~PGVYlfkD~~G~VIYVGKAKNLR~RV~SYF~~~~~~~~K~~~Lv~~i~~Ie~ivT~sE~EALLLE~~LIK~ 83 (694)
T PRK14666 7 STIPLTPGVYLYKDEAGRIIYVGKARHLRRRVASYFRDVSALTPKTVAMLRHAVTIDTLSTTTEKEALLLEASLIKK 83 (694)
T ss_pred hhCCCCCeEEEEECCCCCEEEeeCcHhHHHHHHHHcCCCCCCChHHHHHHHhcCeeEEEEeCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999997522 1 22 24556666665444333333556665
No 216
>PTZ00102 disulphide isomerase; Provisional
Probab=63.08 E-value=19 Score=41.75 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=36.5
Q ss_pred HHHHhhcC-cEE-EEEecCCCCCCCCcHHHHHHHHH-------hCC--CCeEEEEccCccCcHHHHHHHHHHhCCCCcce
Q 003337 203 IDKLVKEN-KVV-AFIKGSRSAPMCGFSQKVIGILE-------SQG--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQ 271 (828)
Q Consensus 203 l~~li~~~-~Vv-ifsKgt~~~~~C~~C~~ak~lL~-------~~g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPq 271 (828)
++++++++ .++ .|.. +||++|+++...+. +.+ +.+-.+|.+.+ . .+.+..+-.++|.
T Consensus 42 f~~~i~~~~~~lv~f~a-----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~---~----~l~~~~~i~~~Pt 109 (477)
T PTZ00102 42 FDKFITENEIVLVKFYA-----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE---M----ELAQEFGVRGYPT 109 (477)
T ss_pred HHHHHhcCCcEEEEEEC-----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC---H----HHHHhcCCCcccE
Confidence 45555554 343 4444 89999998875443 223 44556665443 2 2333446678898
Q ss_pred EEE--CCeE
Q 003337 272 IFV--NGEL 278 (828)
Q Consensus 272 IfI--~Ge~ 278 (828)
+++ +|+.
T Consensus 110 ~~~~~~g~~ 118 (477)
T PTZ00102 110 IKFFNKGNP 118 (477)
T ss_pred EEEEECCce
Confidence 743 5543
No 217
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=62.72 E-value=43 Score=40.01 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=21.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ 238 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~ 238 (828)
+.++|+|+-.+ +||+.|++....|.+.
T Consensus 55 kGKpVvV~FWA----TWCppCk~emP~L~eL 81 (521)
T PRK14018 55 KDKPTLIKFWA----SWCPLCLSELGETEKW 81 (521)
T ss_pred CCCEEEEEEEc----CCCHHHHHHHHHHHHH
Confidence 56778877775 7999999988777654
No 218
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=62.40 E-value=27 Score=35.95 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
.+|.. + +++|.++.-+|+++|++|+.++++... +....+++.+++-...+|.+..
T Consensus 3 ~Ly~~-----~-~~~~~~v~~~L~e~gl~~e~~~v~~~~-~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 3 DLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGK-GGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred EEEEC-----C-CCChHHHHHHHHHcCCCcEEEEecCcc-cccCCHHHHhhCcCCCCCEEEe
Confidence 46754 4 688999999999999999998876431 1222345666777779999976
No 219
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=62.21 E-value=12 Score=34.73 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=45.1
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCcc-CcHHHHHHHHHHhCCCCcceEEECCeEEEechhhh
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEE-YNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILS 286 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~-~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~ 286 (828)
+.++++|+--+ ++|+.|+.....|.+..-.+..+-|..+. ...++++.++++. -.+|.+. +.+
T Consensus 19 ~~k~~vl~F~~----~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~-d~~--------- 82 (123)
T cd03011 19 SGKPVLVYFWA----TWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKG--YGFPVIN-DPD--------- 82 (123)
T ss_pred CCCEEEEEEEC----CcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcC--CCccEEE-CCC---------
Confidence 33555544443 79999999987776543334333332222 2345555555532 2455432 111
Q ss_pred hHHhhccccccchhhhhcccceEEEEe
Q 003337 287 SMYEKGRFKLHDQLELLEFKDQYVIKS 313 (828)
Q Consensus 287 ~l~~sG~lkLl~~l~L~~t~d~~~i~~ 313 (828)
.++.+.+.+..+|.-|+|.+
T Consensus 83 -------~~~~~~~~i~~~P~~~vid~ 102 (123)
T cd03011 83 -------GVISARWGVSVTPAIVIVDP 102 (123)
T ss_pred -------cHHHHhCCCCcccEEEEEcC
Confidence 12444556677888888875
No 220
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=61.86 E-value=18 Score=31.48 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHhCCCC---eEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhhhHH
Q 003337 225 CGFSQKVIGILESQGVD---YESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILSSMY 289 (828)
Q Consensus 225 C~~C~~ak~lL~~~gv~---y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~~l~ 289 (828)
-+.|-++..+|+-.+.+ ++.+....- .++-...+|.+.. +|+.|+|+.++.+..
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~-----------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP-----------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC-----------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 57899999999999999 777765432 2344568999999 999999999998764
No 221
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=60.95 E-value=24 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhC--------CCCeEEEEccCccCcHHHHHHHHHHhC-CCCcceEEECCeEEEe
Q 003337 226 GFSQKVIGILESQ--------GVDYESVDVLDEEYNNGLRETLKKYSN-WPTFPQIFVNGELVGG 281 (828)
Q Consensus 226 ~~C~~ak~lL~~~--------gv~y~~idI~~~~~~~~~~~~L~~~sg-~~TvPqIfI~Ge~IGG 281 (828)
|-++...++|+.. ...|+++||....+++..++...++-. --=+|.|.|+|+.||-
T Consensus 16 PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp --HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 3445666666432 345889999887655555555555543 3458999999999973
No 222
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=60.94 E-value=17 Score=32.43 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=33.7
Q ss_pred cCcE-EEEEecCCCCCCCCcHHHHHHHHHhCC------CCeEEEEccCccCcHHHHHHHHHHhCCC--CcceEEE
Q 003337 209 ENKV-VAFIKGSRSAPMCGFSQKVIGILESQG------VDYESVDVLDEEYNNGLRETLKKYSNWP--TFPQIFV 274 (828)
Q Consensus 209 ~~~V-vifsKgt~~~~~C~~C~~ak~lL~~~g------v~y~~idI~~~~~~~~~~~~L~~~sg~~--TvPqIfI 274 (828)
..++ ++|.. ++|+.|+.++..|++.. +.|-.+|+++. ..+.+.-|-. ++|.+.+
T Consensus 12 ~~~~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-------~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 12 GKPLLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-------GRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCCEEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-------HHHHHHcCCChhhCCEEEE
Confidence 3444 45655 78999999999887642 34555555332 2233334555 8999865
No 223
>PRK11752 putative S-transferase; Provisional
Probab=60.89 E-value=26 Score=37.85 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=50.3
Q ss_pred HhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECC---
Q 003337 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNG--- 276 (828)
Q Consensus 206 li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~G--- 276 (828)
....+++.+|+. .|++|.++.-+|+++ |++|+.+.|+-.. ++....++.+..-..++|.+..++
T Consensus 39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~-~~~~~~e~~~iNP~GkVP~Lv~~dg~~ 111 (264)
T PRK11752 39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGE-GDQFSSGFVEINPNSKIPALLDRSGNP 111 (264)
T ss_pred CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCcc-ccccCHHHHhhCCCCCCCEEEeCCCCC
Confidence 445568999976 389999999999996 8889887775421 112234555666667999997643
Q ss_pred -eEEEechhhhhH
Q 003337 277 -ELVGGCDILSSM 288 (828)
Q Consensus 277 -e~IGG~del~~l 288 (828)
..+--..-+.++
T Consensus 112 ~~~L~ES~AIl~Y 124 (264)
T PRK11752 112 PIRVFESGAILLY 124 (264)
T ss_pred CeEEEcHHHHHHH
Confidence 334444444443
No 224
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=60.57 E-value=21 Score=32.89 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=38.2
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHH-------hCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILE-------SQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~-------~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
++++ +.++++|+.-.+ .+||+|.....-|. +.|+.+-.+..+.. .++++.+++.. ..+|.+.-
T Consensus 20 l~~l-~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~---~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 20 LSDL-KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP---EEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp GGGG-TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH---HHHHHHHHHHT--CSSEEEEE
T ss_pred HHHH-CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccc---cchhhhhhhhc--cccccccC
Confidence 4445 667888777753 58999976654443 34566666666544 35555555543 56676654
No 225
>smart00594 UAS UAS domain.
Probab=60.24 E-value=39 Score=31.92 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhc-CcEEEEEecCCCCCCCCcHHHHHH-HHHhCCC------CeEE--EEccCccCcHHHHHHHHHHhCCC
Q 003337 198 PLEELIDKLVKE-NKVVAFIKGSRSAPMCGFSQKVIG-ILESQGV------DYES--VDVLDEEYNNGLRETLKKYSNWP 267 (828)
Q Consensus 198 ~~~~~l~~li~~-~~VvifsKgt~~~~~C~~C~~ak~-lL~~~gv------~y~~--idI~~~~~~~~~~~~L~~~sg~~ 267 (828)
+.+++++++.++ +.++||--+ ++|++|.+..+ +|.+..| .|.. +|+... +- ..+.+..+..
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~----eg-~~l~~~~~~~ 85 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS----EG-QRVSQFYKLD 85 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh----hH-HHHHHhcCcC
Confidence 567777777776 467777774 79999998654 3433322 2444 355443 22 2344555667
Q ss_pred CcceEEE
Q 003337 268 TFPQIFV 274 (828)
Q Consensus 268 TvPqIfI 274 (828)
++|.+.+
T Consensus 86 ~~P~~~~ 92 (122)
T smart00594 86 SFPYVAI 92 (122)
T ss_pred CCCEEEE
Confidence 8888744
No 226
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=60.04 E-value=48 Score=31.45 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=32.8
Q ss_pred HHHHhhcCc-EEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 203 IDKLVKENK-VVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 203 l~~li~~~~-VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+.+....++ |++|..+ .+||.|++-..-|.+ .|+..-.+..+.. ...+. ..+..+ -++|.+.
T Consensus 17 l~~~~~~~~~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~---~~~~~-~~~~~~-~~~p~~~ 86 (149)
T cd02970 17 LSALLGEGPVVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESP---EKLEA-FDKGKF-LPFPVYA 86 (149)
T ss_pred hHHHhcCCCEEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH---HHHHH-HHHhcC-CCCeEEE
Confidence 334444444 4555543 699999986655544 4555555555433 23332 333223 4677544
No 227
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=59.54 E-value=33 Score=32.82 Aligned_cols=59 Identities=32% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhcCcEEEEEecCCCCCCCCcHHHHHHHH-------HhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEE
Q 003337 207 VKENKVVAFIKGSRSAPMCGFSQKVIGIL-------ESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 207 i~~~~VvifsKgt~~~~~C~~C~~ak~lL-------~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
.+.++++|+.-++ .|||.|.+..-.| .+.++++..+..+.+ +.+++.+++ ...++|.+.
T Consensus 26 ~~gk~~vv~f~~~---~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~---~~~~~~~~~--~~~~~~~~~ 91 (146)
T PF08534_consen 26 FKGKPVVVNFWAS---AWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD---PPVREFLKK--YGINFPVLS 91 (146)
T ss_dssp GTTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS---HHHHHHHHH--TTTTSEEEE
T ss_pred hCCCeEEEEEEcc---CCCCcchhhhhhHHhhhhhhccCceEEEEecccCC---HHHHHHHHh--hCCCceEEe
Confidence 5667777776642 3999999776444 345677777777665 356666666 234677643
No 228
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=59.37 E-value=9.1 Score=45.57 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=35.3
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhccc
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKS 123 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~ 123 (828)
..+|...|||..+|++|++=|||=++|+.--+.+|...
T Consensus 5 ~~lP~~PGVYl~~d~~g~vIYVGKAknLr~RV~sYF~~ 42 (519)
T PRK12306 5 STIPTNPGCYLYKDEEGTIIYVGKAKNLKKRVSSYFQK 42 (519)
T ss_pred hHCCCCCeEEEEECCCCCEEEeccchhHHHHHHHhCCC
Confidence 35889999999999999999999999999999999964
No 229
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=59.31 E-value=14 Score=35.92 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=25.5
Q ss_pred hHHHHHHHHhhcC-cEEEEEecCCCCCCCCcHHHHHHHH
Q 003337 198 PLEELIDKLVKEN-KVVAFIKGSRSAPMCGFSQKVIGIL 235 (828)
Q Consensus 198 ~~~~~l~~li~~~-~VvifsKgt~~~~~C~~C~~ak~lL 235 (828)
+.++.++.+.+++ ||+|+.-+ .||++|+++++..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence 5677788888764 67666553 8999999998753
No 230
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=58.67 E-value=85 Score=37.70 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=46.9
Q ss_pred CCCCChhHHHHHHHHhhc--CcEE--EEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHH
Q 003337 192 NVQLTVPLEELIDKLVKE--NKVV--AFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKK 262 (828)
Q Consensus 192 ~~~~~~~~~~~l~~li~~--~~Vv--ifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~ 262 (828)
...++++.++.+++...+ +||. +|.. +.|.+|..++++|++. .++++.+|..++ +.+.+
T Consensus 346 ~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-------~~~~~ 413 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRLENPVTLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-------PESET 413 (555)
T ss_pred hhccCHHHHHHHHHHHHhcCCCEEEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-------hhhHh
Confidence 346777777777776664 4653 4655 5799999999999884 456777776544 22223
Q ss_pred HhCCCCcceEEE
Q 003337 263 YSNWPTFPQIFV 274 (828)
Q Consensus 263 ~sg~~TvPqIfI 274 (828)
..+-.-.|.+-|
T Consensus 414 ~~~v~~~P~~~i 425 (555)
T TIGR03143 414 LPKITKLPTVAL 425 (555)
T ss_pred hcCCCcCCEEEE
Confidence 344556798876
No 231
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=58.21 E-value=9.3 Score=41.17 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=23.3
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHh---CC-CCeEEEEc
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILES---QG-VDYESVDV 247 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~---~g-v~y~~idI 247 (828)
..|++|+- +.||||+++-+-+.+ .| |.+..+.+
T Consensus 119 ~~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 35788888 999999999666543 23 66666643
No 232
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=57.82 E-value=51 Score=31.48 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCC---cHHHHHHHHHhC--CCCeEEEEccCccCcHHHHHHHHHHhCCC--CcceE--E
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCG---FSQKVIGILESQ--GVDYESVDVLDEEYNNGLRETLKKYSNWP--TFPQI--F 273 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~---~C~~ak~lL~~~--gv~y~~idI~~~~~~~~~~~~L~~~sg~~--TvPqI--f 273 (828)
.++.+++++.+|-.=-.|- |||+ .|++.-.-+... .+.+-.+|+++.. ......|.+..|-. .+|.| |
T Consensus 11 F~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~--~~~~~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYG--EKLNMELGERYKLDKESYPVIYLF 87 (116)
T ss_pred HHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEeccccc--chhhHHHHHHhCCCcCCCCEEEEE
Confidence 6678888776443332122 7898 888887555433 3667777775421 21224565566666 89988 4
Q ss_pred ECC
Q 003337 274 VNG 276 (828)
Q Consensus 274 I~G 276 (828)
.+|
T Consensus 88 ~~g 90 (116)
T cd03007 88 HGG 90 (116)
T ss_pred eCC
Confidence 555
No 233
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=57.68 E-value=9 Score=46.62 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=51.0
Q ss_pred cCcCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhccccc----c---c-cccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 84 FNSKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVP----E---L-CCSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 84 ~~~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P----~---~-c~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
....+|...|||..+|++|++=|||=++|+.--|.++..... - + -.-..++.+.-++..+--=.-..+|.+
T Consensus 6 kl~~lP~~PGVYl~~d~~g~viYVGKAknLr~RV~sYF~~~~~~~~K~~~lv~~i~~ie~i~t~sE~EALlLE~~LIk~ 84 (624)
T PRK14669 6 KIRTLPTSPGVYLYKNAGGEVIYVGKAKNLRSRVRSYFSEDKLGNIKTGSLIREAVDIDYILVDNEKEALALENNLIKQ 84 (624)
T ss_pred HHHhCCCCCeEEEEECCCCCEEEeeCchhHHHHHHHHhccCccCChHHHHHHHhhceEEEEEeCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999999999997421 1 2 334566666666544333333456654
No 234
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=56.50 E-value=12 Score=45.81 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=48.3
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccc--cc---cc-ccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSV--PE---LC-CSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~--P~---~c-~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|.+.|||..+|++|++=|||=++|+.--|.+|.... +. ++ .-..++.+.-++..+--=.-..+|.+
T Consensus 16 ~~LP~~PGVYlfkd~~G~VLYVGKAKNLR~RV~SYF~~~~~~K~~~Lv~~i~~Ie~ivT~sE~EALLLE~~LIK~ 90 (691)
T PRK14672 16 LSAPSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFRCRHDPKTRVLMSRAAALEYLQTQHEYEALLLENTLIKK 90 (691)
T ss_pred HhCCCCCeEEEEECCCCCEEEeeCcHHHHHHHHHHcCCCCCchHHHHHHhhCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999642 11 22 23455555555433322222455554
No 235
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=56.36 E-value=15 Score=32.43 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=43.9
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhC----C--CCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQ----G--VDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDI 284 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~----g--v~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~de 284 (828)
+++||-.+ +||+.|++....|++. + -.++.+-|..+++..+.++.+++.. ...+.+.++...
T Consensus 3 ~~ll~fwa----~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 70 (95)
T PF13905_consen 3 PVLLYFWA----SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNN--FPWYNVPFDDDN------ 70 (95)
T ss_dssp EEEEEEE-----TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCT--TSSEEEETTTHH------
T ss_pred EEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcC--CCceEEeeCcch------
Confidence 44444443 7999999988877553 2 3444554444444466677666542 244554443320
Q ss_pred hhhHHhhccccccchhhhhcccceEEEEe
Q 003337 285 LSSMYEKGRFKLHDQLELLEFKDQYVIKS 313 (828)
Q Consensus 285 l~~l~~sG~lkLl~~l~L~~t~d~~~i~~ 313 (828)
..++.+.+.+-..|.-+++-+
T Consensus 71 --------~~~l~~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 71 --------NSELLKKYGINGIPTLVLLDP 91 (95)
T ss_dssp --------HHHHHHHTT-TSSSEEEEEET
T ss_pred --------HHHHHHHCCCCcCCEEEEECC
Confidence 122444555555666655543
No 236
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=55.86 E-value=64 Score=30.40 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=32.2
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHH-------HHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGI-------LESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~l-------L~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
.++++|+--.+ .+||.|.+...- +.+.++.+-.+.++.. .++++.+++. + ..+|.+
T Consensus 23 gk~~ll~f~~~---~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~---~~~~~~~~~~-~-~~~~~l 85 (140)
T cd03017 23 GKPVVLYFYPK---DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV---ESHAKFAEKY-G-LPFPLL 85 (140)
T ss_pred CCcEEEEEeCC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHh-C-CCceEE
Confidence 56777766522 589999764333 3445666666665443 4566666553 3 356743
No 237
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=55.83 E-value=57 Score=28.02 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCC-CCcceEEEC-CeEEEechhhhh
Q 003337 225 CGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNW-PTFPQIFVN-GELVGGCDILSS 287 (828)
Q Consensus 225 C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~-~TvPqIfI~-Ge~IGG~del~~ 287 (828)
-+.|.+++-+|+..|++|+.+.++-.. +....++.++..-. ..+|.+-.+ |..+-....+..
T Consensus 9 ~~~~~~~r~~l~~~gv~~e~~~v~~~~-~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 9 RGRSERIRLLLAEKGVEYEDVRVDFEK-GEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp STTTHHHHHHHHHTT--EEEEEEETTT-TGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred CCchHHHHHHHHHhcccCceEEEeccc-ccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence 347889999999999999998776421 11222555555555 799999999 887755544443
No 238
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=55.72 E-value=68 Score=31.12 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=35.3
Q ss_pred hhcCcEEEEEecCCCCCCCCcHHH-------HHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 207 VKENKVVAFIKGSRSAPMCGFSQK-------VIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 207 i~~~~VvifsKgt~~~~~C~~C~~-------ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
.+.++++|+--.+ .+||.|.. ..+-+++.|+.+-.+.++.. .++++.+++. + .++|.+
T Consensus 28 ~~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~---~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 28 FQGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP---EKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred hCCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHh-C-CCCeEE
Confidence 3567788777743 46888854 33444556777666666533 5666666654 3 467755
No 239
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=55.04 E-value=15 Score=38.47 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCCCCcHHHHHHHHHhCCCC----eEEEEcc-----------CccCcHHHHHHHHHHhCC--CCcceEEE
Q 003337 212 VVAFIKGSRSAPMCGFSQKVIGILESQGVD----YESVDVL-----------DEEYNNGLRETLKKYSNW--PTFPQIFV 274 (828)
Q Consensus 212 VvifsKgt~~~~~C~~C~~ak~lL~~~gv~----y~~idI~-----------~~~~~~~~~~~L~~~sg~--~TvPqIfI 274 (828)
|-+|+. .+|+.|=-|-++|.+..-+ .-.+.|| ......+-+....+..|. --.||++|
T Consensus 2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 458888 7888888888888665322 2222222 221122233344444433 34799999
Q ss_pred CC-eEEEech--hhhhHHhhc
Q 003337 275 NG-ELVGGCD--ILSSMYEKG 292 (828)
Q Consensus 275 ~G-e~IGG~d--el~~l~~sG 292 (828)
|| ++++|.+ ++..+.+..
T Consensus 77 nG~~~~~g~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 77 NGREHRVGSDRAAVEAAIQAA 97 (202)
T ss_dssp TTTEEEETT-HHHHHHHHHHH
T ss_pred CCeeeeeccCHHHHHHHHHHh
Confidence 99 4677877 444544444
No 240
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=53.71 E-value=53 Score=32.31 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccCccCcHHHHHHHH
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLDEEYNNGLRETLK 261 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~~~~~~~~~~~L~ 261 (828)
+.++++|+-.. +||++|++....|.+. ++.+-.++.+.. ..+.++.++
T Consensus 60 ~~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~--~~~~~~~~~ 114 (173)
T PRK03147 60 KGKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET--ELAVKNFVN 114 (173)
T ss_pred CCCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC--HHHHHHHHH
Confidence 44556555543 7999999865555332 344455555433 234444443
No 241
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=53.55 E-value=73 Score=27.89 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEccCccC----cHHHHHHHHHHh-CCCCcceEEECCeEEEechhhhh
Q 003337 225 CGFSQKVIGILESQGVDYESVDVLDEEY----NNGLRETLKKYS-NWPTFPQIFVNGELVGGCDILSS 287 (828)
Q Consensus 225 C~~C~~ak~lL~~~gv~y~~idI~~~~~----~~~~~~~L~~~s-g~~TvPqIfI~Ge~IGG~del~~ 287 (828)
-+.|.++.-+|+..|++|+.+.++-.+. .++......+.. -..++|.+..||..+.-..-+..
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence 4678899999999999999887764321 112111111111 34589999888876654444443
No 242
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=53.11 E-value=23 Score=42.77 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=48.0
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccccc----cc-ccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVPE----LC-CSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P~----~c-~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|.+.|||-.+| +|++=|||=++|+.-=|.+|....+. ++ .-..++.+.-++..+--=.-..+|.+
T Consensus 11 ~~LP~~PGVYl~~d-~g~viYVGKAknLr~RV~sYF~~~~~k~~~lv~~i~~ie~i~t~sE~eALlLE~~LIK~ 83 (577)
T PRK14668 11 AELPREPGVYQFVA-GGTVLYVGKAVDLRDRVRSYADPRSERIRRMVERADDIDFAVTDTETQALLLEANLIKR 83 (577)
T ss_pred HhCCCCCEEEEEcC-CCeEEEeeCcHhHHHHHHHHcCCCChHHHHHHHhhCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 57899999999999 89999999999999999999864321 22 24456666655443333333455554
No 243
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=52 Score=33.24 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHh
Q 003337 198 PLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILES 237 (828)
Q Consensus 198 ~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~ 237 (828)
++.+..+.+....+-++-|-++ +.|+||.+.|+-+..
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes---~~C~yC~~~KKd~~~ 66 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFES---NGCSYCERFKKDLKN 66 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcC---CCChHHHHHHHhhcc
Confidence 3455566666666655444433 889999999876643
No 244
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=53.03 E-value=82 Score=31.24 Aligned_cols=64 Identities=14% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccCc-----cCcHHHHHHHHHHhCCCCcc
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLDE-----EYNNGLRETLKKYSNWPTFP 270 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~~-----~~~~~~~~~L~~~sg~~TvP 270 (828)
+..+.+..+++||.-+ ++||.|.+...-|.+ .++.+-.+.++.. +...++++.++++ +. .+|
T Consensus 19 l~~~~~~k~~ll~f~~----t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~-~~-~~~ 92 (171)
T cd02969 19 LADFADGKALVVMFIC----NHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEH-GY-PFP 92 (171)
T ss_pred HHHHhCCCEEEEEEEC----CCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHC-CC-Cce
Confidence 4554466777777774 699999864444332 2455555555442 1223455555543 33 255
Q ss_pred eE
Q 003337 271 QI 272 (828)
Q Consensus 271 qI 272 (828)
.+
T Consensus 93 ~l 94 (171)
T cd02969 93 YL 94 (171)
T ss_pred EE
Confidence 44
No 245
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=51.36 E-value=53 Score=30.79 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC----C-CCeEEEEccC-----ccCcHHHHHHHHHHhCCCCcceE
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ----G-VDYESVDVLD-----EEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~----g-v~y~~idI~~-----~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+.+. +.++++|+--+ ++||.|.+...-|++. + ..+..+-|.. ++...++++.+++. + -++|.+
T Consensus 18 l~~~-~gk~vvl~F~a----~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~-~-~~~p~~ 90 (126)
T cd03012 18 LAQL-RGKVVLLDFWT----YCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY-G-ITYPVA 90 (126)
T ss_pred HHHh-CCCEEEEEEEC----CCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-C-CCCCEE
Confidence 4444 55677766664 6999999886666443 2 1234444422 11223445545543 3 357854
Q ss_pred EECCeEEEechhhhhHHhhccccccchhhhhcccceEEEEeC
Q 003337 273 FVNGELVGGCDILSSMYEKGRFKLHDQLELLEFKDQYVIKSV 314 (828)
Q Consensus 273 fI~Ge~IGG~del~~l~~sG~lkLl~~l~L~~t~d~~~i~~~ 314 (828)
. |.+ .++.+.+.+..+|..|+|-+.
T Consensus 91 ~-D~~----------------~~~~~~~~v~~~P~~~vid~~ 115 (126)
T cd03012 91 N-DND----------------YATWRAYGNQYWPALYLIDPT 115 (126)
T ss_pred E-CCc----------------hHHHHHhCCCcCCeEEEECCC
Confidence 3 321 122333444567888887653
No 246
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.62 E-value=27 Score=35.88 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=46.5
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYE 290 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~ 290 (828)
+-++|+-=. +.|.+ |+.-.|.=+|++|+++.|+-...+.+--.++++..-..+||.+.|||..+-..--+.++.+
T Consensus 5 KpiLYSYWr---SSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 5 KPILYSYWR---SSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cchhhhhhc---ccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHH
Confidence 456666511 34754 5555566667776666554322123334467777777899999999988755544555545
Q ss_pred hc
Q 003337 291 KG 292 (828)
Q Consensus 291 sG 292 (828)
+-
T Consensus 80 Et 81 (217)
T KOG0868|consen 80 ET 81 (217)
T ss_pred hc
Confidence 44
No 247
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=49.39 E-value=36 Score=40.24 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHhhcCcEEEEEecCCCCCCCCcHHH-------HHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE-
Q 003337 201 ELIDKLVKENKVVAFIKGSRSAPMCGFSQK-------VIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI- 272 (828)
Q Consensus 201 ~~l~~li~~~~VvifsKgt~~~~~C~~C~~-------ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI- 272 (828)
+-+++.|..+..++..- -+|||++|++ |-..|++.+-+..-..||..+ - ..+....+-+.+|.+
T Consensus 33 dnf~~~i~~~~~vlVeF---YAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~----~-~~~~~~y~v~gyPTlk 104 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEF---YAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE----E-SDLASKYEVRGYPTLK 104 (493)
T ss_pred ccHHHHhccCceEEEEE---EchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch----h-hhhHhhhcCCCCCeEE
Confidence 34788999998775444 3499999985 557777775555555555442 2 344445567788887
Q ss_pred -EECCeE
Q 003337 273 -FVNGEL 278 (828)
Q Consensus 273 -fI~Ge~ 278 (828)
|.||+.
T Consensus 105 iFrnG~~ 111 (493)
T KOG0190|consen 105 IFRNGRS 111 (493)
T ss_pred EEecCCc
Confidence 557764
No 248
>PTZ00057 glutathione s-transferase; Provisional
Probab=48.15 E-value=71 Score=32.73 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=49.1
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHH--HHHHH--HHhCCCCcceEEECCeEEEechhhh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGL--RETLK--KYSNWPTFPQIFVNGELVGGCDILS 286 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~--~~~L~--~~sg~~TvPqIfI~Ge~IGG~del~ 286 (828)
++.+|.. +..+.|.++.-+|+..|++|+.+.+.... ++. .+.++ ..+-...+|.+.+||..+....-+.
T Consensus 4 ~~~L~y~-----~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 4 EIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred ceEEEec-----CCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 3667766 45778889999999999999999774321 121 11122 2455678999999987776665555
Q ss_pred hHHh
Q 003337 287 SMYE 290 (828)
Q Consensus 287 ~l~~ 290 (828)
.+..
T Consensus 77 ~YLa 80 (205)
T PTZ00057 77 RYLS 80 (205)
T ss_pred HHHH
Confidence 5433
No 249
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=48.12 E-value=48 Score=37.98 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=33.2
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhC---------CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQ---------GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV 274 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~---------gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI 274 (828)
..+++|+--. +||+.|++....+++. ++.+-.+|++..+ +. . .+-..+|.+++
T Consensus 364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~----~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VP----P-FEVEGFPTIKF 425 (462)
T ss_pred CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cC----C-CCccccCEEEE
Confidence 4556665442 8999999988777552 3445666765441 11 1 34568898865
No 250
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=47.69 E-value=33 Score=34.52 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=48.1
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHh----------------------CCCCcc
Q 003337 213 VAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYS----------------------NWPTFP 270 (828)
Q Consensus 213 vifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~s----------------------g~~TvP 270 (828)
.|.|.|+ +--+.++++...|++.|++|+..=...+.-.+.+.+.++++. +..++|
T Consensus 2 ~IimGS~---SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~P 78 (156)
T TIGR01162 2 GIIMGSD---SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLP 78 (156)
T ss_pred EEEECcH---hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCC
Confidence 4555544 457889999999999999988876655544445555554322 345666
Q ss_pred eEE--ECCeEEEechhhhhHHh
Q 003337 271 QIF--VNGELVGGCDILSSMYE 290 (828)
Q Consensus 271 qIf--I~Ge~IGG~del~~l~~ 290 (828)
.|= +.....+|.|.|..+.+
T Consensus 79 VIgvP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 79 VIGVPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred EEEecCCccCCCCHHHHHHHhc
Confidence 663 34445666676666655
No 251
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=47.31 E-value=93 Score=29.38 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=32.3
Q ss_pred hcCcEEEEEecCCCCCCCCc-HHHHHHHHHh-------CC---CCeEEEEccCccCc-HHHHHHHHHHhCCCCcceE
Q 003337 208 KENKVVAFIKGSRSAPMCGF-SQKVIGILES-------QG---VDYESVDVLDEEYN-NGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~-C~~ak~lL~~-------~g---v~y~~idI~~~~~~-~~~~~~L~~~sg~~TvPqI 272 (828)
+.++++|+--+ ++|++ |.+....|++ .+ +.+-.+.++...+. ..+++.++++ + ..+|.+
T Consensus 21 ~gk~~vl~f~~----~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~-~-~~~~~l 91 (142)
T cd02968 21 KGKPVLVYFGY----THCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF-G-PGWIGL 91 (142)
T ss_pred CCCEEEEEEEc----CCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh-C-CCcEEE
Confidence 45556655553 79998 9876655544 22 55555555543222 3455555554 2 456644
No 252
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.82 E-value=18 Score=38.99 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=33.0
Q ss_pred hhhccccccc---cccEEEeecCCCChHHHHHHHHHHHH
Q 003337 118 FSHLKSVPEL---CCSVKVGVVDDPDRTALTQAWKSWME 153 (828)
Q Consensus 118 k~h~~~~P~~---c~~~kv~~vd~p~r~~L~~~~~~w~~ 153 (828)
-+.+.+.|++ .+++|++++.|+|+..|+++++.+++
T Consensus 69 ~~gV~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 69 TNGVNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred hcCcccCceEEEEecCeEeeeecCCCHHHHHHHHHHHhc
Confidence 4678899997 88999999999999999999999875
No 253
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=46.00 E-value=1.4e+02 Score=38.96 Aligned_cols=29 Identities=21% Similarity=0.004 Sum_probs=21.2
Q ss_pred HhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhC
Q 003337 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGILESQ 238 (828)
Q Consensus 206 li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~ 238 (828)
..+.++|+|.-.. +||+.|++..-.|++.
T Consensus 417 ~lkGK~vll~FWA----sWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 417 DLKGKVVILDFWT----YCCINCMHVLPDLEFL 445 (1057)
T ss_pred hcCCCEEEEEEEC----CcChhHHhHhHHHHHH
Confidence 3467778877774 7999999977666543
No 254
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=45.65 E-value=89 Score=29.82 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHhhcCcEEEEEe-cCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 203 IDKLVKENKVVAFIK-GSRSAPMCGFSQKVIGILES-------QGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 203 l~~li~~~~VvifsK-gt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
++++..+++++|+.- + .||+.|.+...-|.+ .++.+-.+..+.. ..+++.+++. + ..+|.+
T Consensus 22 l~~~~g~k~~vl~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~---~~~~~~~~~~-~-~~~~~~ 90 (149)
T cd03018 22 LSEFRGRKPVVLVFFPL----AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP---FSLRAWAEEN-G-LTFPLL 90 (149)
T ss_pred HHHHcCCCeEEEEEeCC----CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH---HHHHHHHHhc-C-CCceEe
Confidence 444434366555443 3 699999976544433 3565555555432 3455555543 3 345643
No 255
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=45.56 E-value=87 Score=29.42 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=32.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHH-------hCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILE-------SQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~-------~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
..++++|+.-.+ .+|+.|.....-|. +.++.+-.+.++.. ..+++.+++. +..++|.+
T Consensus 21 ~gk~~ll~f~~~---~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~---~~~~~~~~~~-~~~~~~~l 85 (140)
T cd02971 21 KGKWVVLFFYPK---DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP---FSHKAWAEKE-GGLNFPLL 85 (140)
T ss_pred CCCeEEEEEeCC---CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHhcc-cCCCceEE
Confidence 566677665521 58999987554443 34666666665432 3444444433 23456644
No 256
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.19 E-value=59 Score=29.94 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=42.8
Q ss_pred hhcCcEEEEEecCCCCCCCCc------HHHHHHHHHhC--------CCCeEEEEccCccCcHHHHHHHHHHh-CCCCcce
Q 003337 207 VKENKVVAFIKGSRSAPMCGF------SQKVIGILESQ--------GVDYESVDVLDEEYNNGLRETLKKYS-NWPTFPQ 271 (828)
Q Consensus 207 i~~~~VvifsKgt~~~~~C~~------C~~ak~lL~~~--------gv~y~~idI~~~~~~~~~~~~L~~~s-g~~TvPq 271 (828)
++..++++|+.. .-|.- ++..-++|+.. ...|+++||.........++...++- .---+|.
T Consensus 2 ~~~~~l~VyGae----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 2 VNEAKLVVYGAE----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred CceeEEEEecch----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 345567788763 23444 45556666542 33478899976544444444444432 3346899
Q ss_pred EEECCeEEE
Q 003337 272 IFVNGELVG 280 (828)
Q Consensus 272 IfI~Ge~IG 280 (828)
|.|+|+.|+
T Consensus 78 ivvedeiVa 86 (106)
T COG4837 78 IVVEDEIVA 86 (106)
T ss_pred EEEcceEee
Confidence 999999985
No 257
>PHA03075 glutaredoxin-like protein; Provisional
Probab=44.43 E-value=21 Score=34.04 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEc
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDV 247 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI 247 (828)
...++|+| |.|+-|+-+-++|++..-+|+..-|
T Consensus 3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGK-----PLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCC-----cccHHHHHHHHHHHHhhccccEEEE
Confidence 46789999 9999999999999998888876654
No 258
>PRK10542 glutathionine S-transferase; Provisional
Probab=41.44 E-value=54 Score=33.08 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEE-CCeEEEechhhhhHH
Q 003337 228 SQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFV-NGELVGGCDILSSMY 289 (828)
Q Consensus 228 C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI-~Ge~IGG~del~~l~ 289 (828)
|.++.-+|+++|++|+.+.|+.........+.+.+++-...+|.+-+ ||..|--...+.++.
T Consensus 11 ~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 11 SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 67778899999999998877643110011245666776779999977 555665555555543
No 259
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=41.05 E-value=60 Score=32.73 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHH----HHHHH---HhCCCCeEEEEccCccCcHHHHHHHHHH
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQK----VIGIL---ESQGVDYESVDVLDEEYNNGLRETLKKY 263 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~----ak~lL---~~~gv~y~~idI~~~~~~~~~~~~L~~~ 263 (828)
+.+....+-|.+|-.. .|||.|+. .|++. ++.+-+++.+=|+.|.+..++.+.+.+.
T Consensus 27 ~~~~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred HhHhhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 3445555666666553 79999985 34444 4455679999888877677777777753
No 260
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=45 Score=35.02 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=45.3
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCe--EEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEE-e---c
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDY--ESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVG-G---C 282 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y--~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IG-G---~ 282 (828)
+..|-||.. ..|.-|....+.|+++|.-. +.+|-.. -...++++ +--++|-||+||+.+- + .
T Consensus 10 ~~~VkI~~H-----ktC~ssy~Lf~~L~nkgll~~Vkii~a~~-----p~f~~~~~--~V~SvP~Vf~DGel~~~dpVdp 77 (265)
T COG5494 10 EMEVKIFTH-----KTCVSSYMLFEYLENKGLLGKVKIIDAEL-----PPFLAFEK--GVISVPSVFIDGELVYADPVDP 77 (265)
T ss_pred heEEEEEEe-----cchHHHHHHHHHHHhcCCCCCceEEEcCC-----ChHHHhhc--ceeecceEEEcCeEEEcCCCCH
Confidence 346778888 56999999999999998753 3333321 12223332 4568999999999873 3 3
Q ss_pred hhhhhH
Q 003337 283 DILSSM 288 (828)
Q Consensus 283 del~~l 288 (828)
++++.+
T Consensus 78 ~~ies~ 83 (265)
T COG5494 78 EEIESI 83 (265)
T ss_pred HHHHHH
Confidence 445544
No 261
>PF15214 PXT1: Peroxisomal testis-specific protein 1
Probab=38.85 E-value=7.9 Score=30.95 Aligned_cols=10 Identities=60% Similarity=1.232 Sum_probs=8.4
Q ss_pred CcceecHHhh
Q 003337 455 PRFVWNRNLL 464 (828)
Q Consensus 455 ~rF~WN~~l~ 464 (828)
-||+||.||+
T Consensus 42 LrFfwnnhll 51 (51)
T PF15214_consen 42 LRFFWNNHLL 51 (51)
T ss_pred hhhhhhcccC
Confidence 4999999874
No 262
>PTZ00256 glutathione peroxidase; Provisional
Probab=38.79 E-value=1.3e+02 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHH-------hCCCCeEEEEccC---c--cCcHHHHHHHHHHhCCCCcceEE
Q 003337 223 PMCGFSQKVIGILE-------SQGVDYESVDVLD---E--EYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 223 ~~C~~C~~ak~lL~-------~~gv~y~~idI~~---~--~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+|||.|.+-...|. +.|+.+--+.++. . .+..++++.+++..+ -++|.+.
T Consensus 51 twCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~ 112 (183)
T PTZ00256 51 CKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQ 112 (183)
T ss_pred CCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCce
Confidence 79999998544443 3355555555431 1 123456666654344 4688863
No 263
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.26 E-value=54 Score=30.26 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHHhCCC--CeEEEEccCccCcHHHHHHHHHH----hCCCCcceEEECCe-EEEechhhhhHHhhc
Q 003337 223 PMCGFSQKVIGILESQGV--DYESVDVLDEEYNNGLRETLKKY----SNWPTFPQIFVNGE-LVGGCDILSSMYEKG 292 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv--~y~~idI~~~~~~~~~~~~L~~~----sg~~TvPqIfI~Ge-~IGG~del~~l~~sG 292 (828)
..||+|.+..+.++.... .++.+++...+ -.+.+... ....+.-.+.-+|+ ...|.|-+.++...-
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEP----DQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChh----hhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHc
Confidence 479999999999999864 58888884331 11112111 11233444433776 889999998886653
No 264
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=37.05 E-value=79 Score=30.82 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=32.2
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEccC----c-cCcHHHHHHHHHHhCCCCcceE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVLD----E-EYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~~----~-~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+.++|+|+-.. +||| |.+...-|.+. |+.+--+.++. + +...++++.+++..+ -++|.+
T Consensus 21 ~Gk~vvl~fwa----twC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~ 91 (152)
T cd00340 21 KGKVLLIVNVA----SKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMF 91 (152)
T ss_pred CCCEEEEEEEc----CCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceee
Confidence 35667766553 7999 99866555542 33333444332 1 112345666654333 478876
No 265
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=46 Score=35.97 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=39.6
Q ss_pred CcEEEEEecCCCCCCCCcHHHHHHHHHhCCCC-----eEEEEccCccCcHHHHHHHHHHhCCCCcceE--EECCeEE
Q 003337 210 NKVVAFIKGSRSAPMCGFSQKVIGILESQGVD-----YESVDVLDEEYNNGLRETLKKYSNWPTFPQI--FVNGELV 279 (828)
Q Consensus 210 ~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~-----y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI--fI~Ge~I 279 (828)
.-+|=|+. .||+.|+++--++++..-+ |-.+|||+ .|..- .-.|...+|.. |.||.-|
T Consensus 23 ~v~Vdfta-----~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~------c~~ta-a~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 23 LVVVDFTA-----SWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE------CRGTA-ATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEEEe-----cccchHHhhhhHHHHhhhhCcccEEEEEeHHH------hhchh-hhcCcccCceEEEEecCeEe
Confidence 35666777 7999999999998886444 55667633 33332 33577778875 7899755
No 266
>PTZ00056 glutathione peroxidase; Provisional
Probab=36.52 E-value=99 Score=32.02 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=33.1
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccC----c-cCcHHHHHHHHHHhCCCCcceEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLD----E-EYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~----~-~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+.++|+|+-.. +|||+|.+-...|.+ .|+.+--+.+++ + +...++++.+++. + -++|.+.
T Consensus 38 kGkvvlv~fwA----swC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~-~-~~fpvl~ 109 (199)
T PTZ00056 38 KNKVLMITNSA----SKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKN-K-IKYNFFE 109 (199)
T ss_pred CCCEEEEEEEC----CCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHc-C-CCceeee
Confidence 45667666664 799999974433333 345444444421 1 1224566666553 3 4688654
No 267
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=35.84 E-value=24 Score=42.54 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=51.3
Q ss_pred CCCcccCcCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccc---cc---cc-ccEEEeecCCCChHHHHHHHHHH
Q 003337 79 LTAEEFNSKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSV---PE---LC-CSVKVGVVDDPDRTALTQAWKSW 151 (828)
Q Consensus 79 ~~~~~~~~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~---P~---~c-~~~kv~~vd~p~r~~L~~~~~~w 151 (828)
|+..+....+|...|||-.+ ++|++=|||=++|+.-=|.+|.... +. ++ .-..|+.+.-++..+--=.-..+
T Consensus 4 ~~l~~~l~~lP~~PGVYl~~-~~g~viYVGKAknLr~RV~sYF~~~~~~~K~~~lv~~i~~ie~i~t~sE~EALlLE~~L 82 (567)
T PRK14667 4 MDALELIEKAPEEPGVYLFK-KKKRYIYIGKAKNIKNRLLQHYKQSETDPKERAIFSESSSLEWIITRNEYEALVLEIDL 82 (567)
T ss_pred hhHHHHHHhCCCCCeEEEEe-cCCeEEEeeCcHhHHHHHHHHcCCCCCChHHHHHHHhhCeEEEEEeCCHHHHHHHHHHH
Confidence 44555667899999999999 9999999999999999999999642 11 22 23455555555433322223445
Q ss_pred HHH
Q 003337 152 MEE 154 (828)
Q Consensus 152 ~~e 154 (828)
|.+
T Consensus 83 IK~ 85 (567)
T PRK14667 83 IQQ 85 (567)
T ss_pred HHH
Confidence 554
No 268
>PLN02412 probable glutathione peroxidase
Probab=35.83 E-value=1.4e+02 Score=29.87 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=31.7
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccC----c-cCcHHHHHHHHHHhCCCCcceEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLD----E-EYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~----~-~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+.++|+|+-.. +|||.|.+...-|.+ .|+.+--+..+. + +...++++...+..+ -++|.+.
T Consensus 28 ~gk~vlv~f~a----~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVA----SKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred CCCEEEEEEeC----CCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 34566664442 799999964333333 344444444332 0 112355555433333 5799875
No 269
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=35.00 E-value=1.3e+02 Score=32.37 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=32.3
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHH-------HhCCCCeEEEEccC----c-cCcHHHHHHHHHHhCCCCcceE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGIL-------ESQGVDYESVDVLD----E-EYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL-------~~~gv~y~~idI~~----~-~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+.++|+|.-.. +|||.|.+...-| ++.|+.+--+..+. + +..+++++.+.+..+ -++|.+
T Consensus 98 kGK~vvl~FwA----swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g-~~fPvl 169 (236)
T PLN02399 98 KGKVLLIVNVA----SKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK-AEFPIF 169 (236)
T ss_pred CCCeEEEEEEc----CCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCccc
Confidence 34555555442 7999998744333 33456555565532 1 223456665533333 568863
No 270
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=34.99 E-value=38 Score=32.17 Aligned_cols=58 Identities=10% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCeEEEEccCccCcHHHHHHHH------HHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 230 KVIGILESQGVDYESVDVLDEEYNNGLRETLK------KYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 230 ~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~------~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
...+++++.|++...++-... .++.++.++ +..|-..+|.++|||+.+-|.++...+.
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMD--DPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhh--ChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 466677777876543321111 122222222 2347788999999999999998877664
No 271
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=34.89 E-value=30 Score=32.94 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=17.3
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILES 237 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~ 237 (828)
.|++|.- +.||+|.+....+++
T Consensus 8 ~i~~f~D-----~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 8 TIVEFFD-----YNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEC-----CCChhHHHhhHHHHH
Confidence 5667776 899999998777665
No 272
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=1.1e+02 Score=32.25 Aligned_cols=71 Identities=11% Similarity=0.001 Sum_probs=50.9
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhh
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSS 287 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~ 287 (828)
+..+|+. +.-+.|+++.-.++..|++|+.+.++... +.....+..++.-..++|.+--+|-.+=....+..
T Consensus 2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~-ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVK-GEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccc-cccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHH
Confidence 4568877 78899999999999999999998665431 23445555566667799999777665544433333
No 273
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=33.26 E-value=82 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHhCC------CCeEEEEcc
Q 003337 223 PMCGFSQKVIGILESQG------VDYESVDVL 248 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~g------v~y~~idI~ 248 (828)
+|||+|+++...|.+.. +.+..+++.
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 79999999987776542 456666664
No 274
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=30.43 E-value=1.3e+02 Score=31.13 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHH-------HHhCCCCeEEEEccCccCcHHHHHHHHHHhC-CCCcceE
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGI-------LESQGVDYESVDVLDEEYNNGLRETLKKYSN-WPTFPQI 272 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~l-------L~~~gv~y~~idI~~~~~~~~~~~~L~~~sg-~~TvPqI 272 (828)
+.+...++.++||.-- ..+||.|..-..- +++.|+++--+.+|..+...+..+.+++..+ .-++|.+
T Consensus 19 l~d~~g~k~vvlf~~p---a~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil 93 (203)
T cd03016 19 FHDYLGDSWGILFSHP---ADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPII 93 (203)
T ss_pred HHHHcCCCEEEEEEec---CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEE
Confidence 3444333567765442 2789999985443 4556777777777654211222333444332 3456644
No 275
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=1.1e+02 Score=32.19 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHHhCCCCcceEEECCeEEEechhhhhHHhh
Q 003337 223 PMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQIFVNGELVGGCDILSSMYEK 291 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqIfI~Ge~IGG~del~~l~~s 291 (828)
+..+.|.-+..+|.-.|++|+++.+..++ . ...++..+-...+|.+.|||.-|...-.+..+...
T Consensus 10 ~~RG~ae~iR~lf~~a~v~fEd~r~~~~~---~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLAr 74 (206)
T KOG1695|consen 10 NIRGLAEPIRLLFAYAGVSFEDKRITMED---A-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLAR 74 (206)
T ss_pred CcchhHHHHHHHHHhcCCCcceeeecccc---c-hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHH
Confidence 45889999999999999999999997653 1 55666667778999999999988766666665443
No 276
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.11 E-value=1.2e+02 Score=35.82 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHh---CCCCeEEEEccCccCcHHHHHHHHHH---hCC--CCcceEE---E----CCeEEEechhhhh
Q 003337 223 PMCGFSQKVIGILES---QGVDYESVDVLDEEYNNGLRETLKKY---SNW--PTFPQIF---V----NGELVGGCDILSS 287 (828)
Q Consensus 223 ~~C~~C~~ak~lL~~---~gv~y~~idI~~~~~~~~~~~~L~~~---sg~--~TvPqIf---I----~Ge~IGG~del~~ 287 (828)
..|||=.+|.-+-+. .=-+|..+-|..++ ++..+.|++. .|| ..-|.|. + .|-++||++|+.|
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p--~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHP--DEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCCh--HHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 369998888755444 34469999998774 3444445443 465 4789996 4 5789999999999
Q ss_pred HHhhc
Q 003337 288 MYEKG 292 (828)
Q Consensus 288 l~~sG 292 (828)
+.+.-
T Consensus 80 ~~~~y 84 (452)
T cd05295 80 YAESY 84 (452)
T ss_pred HHHHH
Confidence 86543
No 277
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.63 E-value=70 Score=31.98 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCeEEEEccCccCcHHHHHHHH------HHhCCCCcceEEECCeEEEechhhhhHH
Q 003337 229 QKVIGILESQGVDYESVDVLDEEYNNGLRETLK------KYSNWPTFPQIFVNGELVGGCDILSSMY 289 (828)
Q Consensus 229 ~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~------~~sg~~TvPqIfI~Ge~IGG~del~~l~ 289 (828)
....+++++.|++.+.+.-.- ..++.++.+. ...|...+|.++|||+.+=|.|.+..+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~--~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAA--DDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHc--CCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 357789999999754331111 1123333332 2247899999999999999999887653
No 278
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=27.47 E-value=67 Score=38.94 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=50.0
Q ss_pred cCCCCcceEEEEEcCCCCeeEeechhhHHHHHhhhcccccc-----c-cccEEEeecCCCChHHHHHHHHHHHHH
Q 003337 86 SKFPSETGVYAVYDKNDELQFVGISRNIGASVFSHLKSVPE-----L-CCSVKVGVVDDPDRTALTQAWKSWMEE 154 (828)
Q Consensus 86 ~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~P~-----~-c~~~kv~~vd~p~r~~L~~~~~~w~~e 154 (828)
..+|.+.|||-.+|++|++=|||=.+|+.-=+.+....... + -+-..++.+--.+..+---.-..||+.
T Consensus 10 ~~lP~~PGvY~~~d~~g~VlYVGKAknLr~Rv~sYF~~~~~~kt~~lv~~i~~iE~ivt~~E~EALlLE~nLIK~ 84 (581)
T COG0322 10 KNLPHSPGVYLMKDENGTVLYVGKAKNLRKRVSSYFRGRLDPKTAALVENIADIEYIVTDTETEALLLENNLIKK 84 (581)
T ss_pred HhCCCCCeeEEEECCCCCEEEEeehhhHHHHHHHhhcCCCcHHHHHHHHhhcceeEEEeCCHHHHHHHHHhHHHh
Confidence 56899999999999999999999999999999998886643 1 333444444444444444444556654
No 279
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=26.97 E-value=1.7e+02 Score=27.73 Aligned_cols=58 Identities=3% Similarity=-0.175 Sum_probs=31.1
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-----CCCeEEEEccCccCcHHHHHHHHHHhCCCCcceE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-----GVDYESVDVLDEEYNNGLRETLKKYSNWPTFPQI 272 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-----gv~y~~idI~~~~~~~~~~~~L~~~sg~~TvPqI 272 (828)
+.+++||+.-.+ .+||.|.+...-|.+. |+.+-.+.++.. ... +...+..+...+|.+
T Consensus 25 ~gk~vvl~f~~~---~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~---~~~-~~~~~~~~~~~~~~l 87 (143)
T cd03014 25 AGKVKVISVFPS---IDTPVCATQTKRFNKEAAKLDNTVVLTISADLP---FAQ-KRWCGAEGVDNVTTL 87 (143)
T ss_pred CCCeEEEEEEcC---CCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCH---HHH-HHHHHhcCCCCceEe
Confidence 456777776632 3489999877666433 444555555432 233 334333344456643
No 280
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=26.39 E-value=56 Score=32.14 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=24.0
Q ss_pred cCcEEEEEecCCCCCCCCcHHHHHHHHHhC------CCCeEEEEcc
Q 003337 209 ENKVVAFIKGSRSAPMCGFSQKVIGILESQ------GVDYESVDVL 248 (828)
Q Consensus 209 ~~~VvifsKgt~~~~~C~~C~~ak~lL~~~------gv~y~~idI~ 248 (828)
...|+.|.- +.||+|.++...+.+. ++.++.+.+.
T Consensus 16 ~~~i~~f~D-----~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 16 KPEVIEFFS-----YGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CcEEEEEEC-----CCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 346788877 8999999987766443 4456555543
No 281
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=25.77 E-value=2.9e+02 Score=33.55 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=74.9
Q ss_pred hhccccccccccEEEe--ecCCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCCCC
Q 003337 119 SHLKSVPELCCSVKVG--VVDDPDRTALTQAWKSWMEEHIQATGKIPPGNESGNNTWVRQPPKKKKPDLRLTPGHNVQLT 196 (828)
Q Consensus 119 ~h~~~~P~~c~~~kv~--~vd~p~r~~L~~~~~~w~~e~~~~~G~vP~GN~~~~~~W~~~~~~~~~~~~~l~~~~~~~~~ 196 (828)
-|+-.-|+....-|+. ++.+.++.++.+..+.|+.. .+..+. .+ |
T Consensus 361 v~~ygk~~~r~~rkmGhV~~~g~~~~e~~~~~~~~~~~----~~~~~~------------~~----------~------- 407 (577)
T PLN02948 361 VHWYGKPEMRKQRKMGHITVVGPSAAEVEARLDQLLAE----ESADPD------------AL----------P------- 407 (577)
T ss_pred EEEecCCCCCCCCeeEEEEEecCCHHHHHHHHHHHHhh----hccCCC------------CC----------C-------
Confidence 3443333433333443 34578999999999999864 333320 00 0
Q ss_pred hhHHHHHHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHHHH-------------
Q 003337 197 VPLEELIDKLVKENKVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLKKY------------- 263 (828)
Q Consensus 197 ~~~~~~l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~~~------------- 263 (828)
.....|.|.|.|+ +--+.++++...|++.|++|+..=+..+.....+.+.+++.
T Consensus 408 ----------~~~~~v~i~~gs~---sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag 474 (577)
T PLN02948 408 ----------KGTPLVGIIMGSD---SDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAG 474 (577)
T ss_pred ----------CCCCeEEEEECch---hhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 0023488888876 56788999999999999999865444443333344433322
Q ss_pred ---------hCCCCcceEE--ECCeEEEechhhhhHHhh
Q 003337 264 ---------SNWPTFPQIF--VNGELVGGCDILSSMYEK 291 (828)
Q Consensus 264 ---------sg~~TvPqIf--I~Ge~IGG~del~~l~~s 291 (828)
.+..+.|.|= +++...+|.|.|..+.+.
T Consensus 475 ~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 475 GAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM 513 (577)
T ss_pred ccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC
Confidence 2345666663 333355677776666554
No 282
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=25.61 E-value=2.6e+02 Score=28.85 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.2
Q ss_pred HhhcCcEEEEEecCCCCCCCCcHHHHHHHH---HhCCCCe------EEEEccCc
Q 003337 206 LVKENKVVAFIKGSRSAPMCGFSQKVIGIL---ESQGVDY------ESVDVLDE 250 (828)
Q Consensus 206 li~~~~VvifsKgt~~~~~C~~C~~ak~lL---~~~gv~y------~~idI~~~ 250 (828)
+.-+-.+|-|-. .||+.|+.-.-+| ++.|+++ .-+++++.
T Consensus 57 l~GKV~lvn~~A-----swc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 57 LAGKVRVVHHIA-----GRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred cCCCEEEEEEEe-----cCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 333334555666 6999999866555 5567887 67787654
No 283
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=23.58 E-value=88 Score=19.99 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.0
Q ss_pred ceEEEEEcCCCCeeEeec
Q 003337 92 TGVYAVYDKNDELQFVGI 109 (828)
Q Consensus 92 ~gvyav~d~~~~lq~ig~ 109 (828)
-|++-.|+++|+|+..+.
T Consensus 2 ~G~~~~yy~nG~l~~~~~ 19 (22)
T PF07661_consen 2 DGEWKFYYENGKLKSEGH 19 (22)
T ss_pred cceEEEEeCCCCEEEEEE
Confidence 489999999999998874
No 284
>PRK13599 putative peroxiredoxin; Provisional
Probab=23.52 E-value=2e+02 Score=30.17 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=34.9
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHH-------HHhCCCCeEEEEccCccCcHHHHHHHHHHhC-CCCcceEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGI-------LESQGVDYESVDVLDEEYNNGLRETLKKYSN-WPTFPQIF 273 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~l-------L~~~gv~y~~idI~~~~~~~~~~~~L~~~sg-~~TvPqIf 273 (828)
..+.+|||+-- ..+||.|..-..- +++.|+..--+.+|.........+.+++..+ .-++|.+.
T Consensus 27 ~Gk~vVL~~~p---a~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~ 97 (215)
T PRK13599 27 AGKWFVLFSHP---ADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIA 97 (215)
T ss_pred CCCeEEEEEeC---CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEE
Confidence 45566665541 2789999984443 3455776666676654222223344554323 23678553
No 285
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=23.39 E-value=1.9e+02 Score=29.50 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=24.1
Q ss_pred hcCcEEEEEe-cCCCCCCCCcHHHHHHHH-------HhCCCCeEEEEccC
Q 003337 208 KENKVVAFIK-GSRSAPMCGFSQKVIGIL-------ESQGVDYESVDVLD 249 (828)
Q Consensus 208 ~~~~VvifsK-gt~~~~~C~~C~~ak~lL-------~~~gv~y~~idI~~ 249 (828)
+.++++||-- + .|||.|.+-..-| .+.|+.+--+.+|.
T Consensus 30 ~Gk~vvl~F~p~----~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPA----DFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECC----CcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 4556776664 3 6999999855433 44566666666554
No 286
>PF06620 DUF1150: Protein of unknown function (DUF1150); InterPro: IPR009531 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.35 E-value=1.3e+02 Score=26.70 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=26.0
Q ss_pred cCcCCCCcceEEEEEcCCCCeeEeechhhHHHHH
Q 003337 84 FNSKFPSETGVYAVYDKNDELQFVGISRNIGASV 117 (828)
Q Consensus 84 ~~~~~~~~~gvyav~d~~~~lq~ig~sr~~~~Sl 117 (828)
+|++++...-+|||++.+|+-=-+==+|+.....
T Consensus 31 ~~~~~~~~~~l~Avh~AdG~~lal~~dR~~Af~~ 64 (76)
T PF06620_consen 31 FPPQIDPGETLYAVHAADGTPLALVDDRDAAFAA 64 (76)
T ss_pred cccccCCCceEEEEecCCCCEEEEECCHHHHHHH
Confidence 3455667788999999999987777777776544
No 287
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=23.07 E-value=1.1e+02 Score=27.68 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCeeEeechhhHHHHHhhhcccc
Q 003337 93 GVYAVYDKNDELQFVGISRNIGASVFSHLKSV 124 (828)
Q Consensus 93 gvyav~d~~~~lq~ig~sr~~~~Slk~h~~~~ 124 (828)
=||-|...+| -=|||++-|+.--+++|-.-.
T Consensus 8 ~vYil~~~~~-~~Y~G~T~dl~~Rl~qH~~g~ 38 (86)
T PRK00329 8 FLYLLRCADG-SLYTGITTDVERRFAQHQSGK 38 (86)
T ss_pred EEEEEEcCCC-CEEEEEcCCHHHHHHHHHcCC
Confidence 4899999877 569999999999999997654
No 288
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.83 E-value=2.2e+02 Score=28.68 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=33.2
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHHHhCCCCeEEEEccCccCcHHHHHHHH
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGILESQGVDYESVDVLDEEYNNGLRETLK 261 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~ 261 (828)
.|.|.|.+. +--+.-+++.++|++.|++|+..=+..|.-.+.+.+..+
T Consensus 4 ~V~IIMGS~---SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~ 51 (162)
T COG0041 4 KVGIIMGSK---SDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAE 51 (162)
T ss_pred eEEEEecCc---chHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHH
Confidence 355555532 446678899999999999999988877653344444444
No 289
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=22.74 E-value=2.7e+02 Score=27.67 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=24.0
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHh-------CCCCeEEEEccC
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILES-------QGVDYESVDVLD 249 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~-------~gv~y~~idI~~ 249 (828)
+.+.+||+--.. .||+.|.....-|.+ .|+..-.+.++.
T Consensus 28 ~Gk~vvl~F~~~---~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPL---DFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECC---CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 346676666411 589999986665543 456655555544
No 290
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=22.59 E-value=92 Score=30.36 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=31.4
Q ss_pred hcCcEEEEEecCCCCCCCCcHHHHHHHHHhC-------CCCeEEEEcc-----CccCcHHHHHHHHHHhCCCCcceEE
Q 003337 208 KENKVVAFIKGSRSAPMCGFSQKVIGILESQ-------GVDYESVDVL-----DEEYNNGLRETLKKYSNWPTFPQIF 273 (828)
Q Consensus 208 ~~~~VvifsKgt~~~~~C~~C~~ak~lL~~~-------gv~y~~idI~-----~~~~~~~~~~~L~~~sg~~TvPqIf 273 (828)
+.++++|+--. +|||+|.+...-|.+. |+.+--++.. +.+...++++.+++..+ -++|.+.
T Consensus 21 ~Gk~vvv~~~a----s~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~-~~fp~~~ 93 (153)
T TIGR02540 21 RGKVSLVVNVA----SECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYG-VTFPMFS 93 (153)
T ss_pred CCCEEEEEEeC----CCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcC-CCCCccc
Confidence 45666555442 7999998766433332 4444444421 11122345555543223 4688764
No 291
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.53 E-value=56 Score=32.61 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCeEEEEccCccCcHHHHHHHH------HHhCCCCcceEEECCe-EEEechhhhhHH
Q 003337 229 QKVIGILESQGVDYESVDVLDEEYNNGLRETLK------KYSNWPTFPQIFVNGE-LVGGCDILSSMY 289 (828)
Q Consensus 229 ~~ak~lL~~~gv~y~~idI~~~~~~~~~~~~L~------~~sg~~TvPqIfI~Ge-~IGG~del~~l~ 289 (828)
.-+.+++++.|++...++-.- .+++.++.+. ...|-..+|.+.|||+ .+-|.+.+..+.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~--~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAAL--DSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHH--TSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHh--cchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 347888999999755442211 1134333333 2347889999999999 889998887764
No 292
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=22.30 E-value=69 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCCCCCcHHHHHHHH----HhC----CCCeEEEEcc
Q 003337 211 KVVAFIKGSRSAPMCGFSQKVIGIL----ESQ----GVDYESVDVL 248 (828)
Q Consensus 211 ~VvifsKgt~~~~~C~~C~~ak~lL----~~~----gv~y~~idI~ 248 (828)
.|++|.. +.||+|.++-..+ ++. .+.+..+++-
T Consensus 15 ~v~~f~d-----~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 15 TVTEFFD-----FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred EEEEEEC-----CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 5788888 8999999986555 333 4556666663
No 293
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=22.16 E-value=1.4e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.0
Q ss_pred EEECCeEEEechhhhh
Q 003337 272 IFVNGELVGGCDILSS 287 (828)
Q Consensus 272 IfI~Ge~IGG~del~~ 287 (828)
||+||..||=.++=.+
T Consensus 1 VFlNG~~iG~~~~p~~ 16 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEE 16 (63)
T ss_dssp EEETTEEEEEESSHHH
T ss_pred CEECCEEEEEEcCHHH
Confidence 7999999998877433
No 294
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=21.72 E-value=1.2e+02 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred HHhCCCCcceEEECCeEEEechhhhhH
Q 003337 262 KYSNWPTFPQIFVNGELVGGCDILSSM 288 (828)
Q Consensus 262 ~~sg~~TvPqIfI~Ge~IGG~del~~l 288 (828)
+..|-..+|.++|||+.+.|.-++.++
T Consensus 130 ~~~~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 130 RQLGITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp HHHT-SSSSEEEETTCEEETTTSHHHH
T ss_pred HHcCCccccEEEECCEEeCCCCCHHHH
Confidence 345778999999999999876665554
No 295
>PRK15000 peroxidase; Provisional
Probab=21.01 E-value=2.5e+02 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=28.1
Q ss_pred HHHHhhcCcEEEEEecCCCCCCCCcHHHHHHHH-------HhCCCCeEEEEccCc
Q 003337 203 IDKLVKENKVVAFIKGSRSAPMCGFSQKVIGIL-------ESQGVDYESVDVLDE 250 (828)
Q Consensus 203 l~~li~~~~VvifsKgt~~~~~C~~C~~ak~lL-------~~~gv~y~~idI~~~ 250 (828)
+.+..+.+.++||.--+ .+|+-|.+-..-| +++|++.-.+.+|..
T Consensus 28 l~~~~~gk~vvL~F~p~---~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 28 FKQHTNGKTTVLFFWPM---DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred HHHHhCCCEEEEEEECC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 33444677888888821 4799999855444 445666666666543
No 296
>PHA02598 denA endonuclease II; Provisional
Probab=20.13 E-value=1.3e+02 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.1
Q ss_pred CcceEEEEEcCCCCeeEeechhhHHHHHhhhcc
Q 003337 90 SETGVYAVYDKNDELQFVGISRNIGASVFSHLK 122 (828)
Q Consensus 90 ~~~gvyav~d~~~~lq~ig~sr~~~~Slk~h~~ 122 (828)
.+-|||+.+ .+|++=|||=++|..-=+.++..
T Consensus 32 ~~n~VY~~~-~~~~viYVGKAknLkkRv~sYf~ 63 (138)
T PHA02598 32 KKNVIYAIA-VDDELVYIGKTKNLRKRIDYYRN 63 (138)
T ss_pred cceEEEEEE-eCCeEEEEeehhhHHHHHHHHhC
Confidence 378999999 99999999999999888888743
Done!