Citrus Sinensis ID: 003339
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 828 | 2.2.26 [Sep-21-2011] | |||||||
| O22193 | 826 | U-box domain-containing p | yes | no | 0.985 | 0.987 | 0.635 | 0.0 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.385 | 0.451 | 0.643 | 1e-114 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.340 | 0.371 | 0.636 | 1e-94 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.326 | 0.441 | 0.520 | 2e-70 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.352 | 0.442 | 0.484 | 3e-69 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.342 | 0.464 | 0.496 | 9e-67 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.328 | 0.430 | 0.531 | 3e-65 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.340 | 0.449 | 0.498 | 3e-63 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.344 | 0.435 | 0.467 | 4e-63 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.326 | 0.389 | 0.490 | 4e-60 |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/833 (63%), Positives = 634/833 (76%), Gaps = 17/833 (2%)
Query: 6 LKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKA 65
++VLL+ ISSFL+LSS I LD +KYY+R E++L++LKPI D +V SD DE L KA
Sbjct: 1 MEVLLRSISSFLNLSSSKHIDLDPFEKYYKRVEELLRVLKPIADVVVTSDFVFDEKLGKA 60
Query: 66 FEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGEL 125
FEE Q +D+ +L +WQ S+VYFVLQ+ESL+ K+R + +D L SS + P EL
Sbjct: 61 FEELTQDVDQSIDLFRSWQAFSSKVYFVLQIESLLPKMRDTIVDTFQFLMSSKNHLPDEL 120
Query: 126 SSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIE 185
S SLE C +KIKH+ YE+ SS+I A+RDQ DGV PS EILVK+ E+ LRSNQEILIE
Sbjct: 121 SPASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIE 180
Query: 186 AVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLS 245
AVALE+ KE AEQ+E E EF+DQ+I +V RMH+RL++IKQ+Q S V I +DF CPLS
Sbjct: 181 AVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLS 239
Query: 246 LELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 305
LE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE
Sbjct: 240 LEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCET 299
Query: 306 NNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNL 364
N+VKLPDP K+ SLN+ SPL DS + + N+ S+ T P+
Sbjct: 300 NDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--F 357
Query: 365 VSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQ 424
S REG+SP P S S GI+GNG GLD R SL EDR ++S E + G+
Sbjct: 358 SSRATEREGASPSRPASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGR 417
Query: 425 PSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SD 479
S+S + + +++ + S + H+R+ SA+S +SN + DANE SE S H SD
Sbjct: 418 SSVSSTTR---GSVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSD 474
Query: 480 ASGE---GKLESQPATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETR 535
ASGE G L + + RR+ +F + M+ R+R Q WRRPSER RIVS ETR
Sbjct: 475 ASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETR 533
Query: 536 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH 595
DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+
Sbjct: 534 RDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLY 593
Query: 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655
S+++ QENAVTALLNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSV
Sbjct: 594 STDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSV 653
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
IE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+D
Sbjct: 654 IEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLID 713
Query: 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL
Sbjct: 714 LMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQL 773
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 774 STNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 826
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/323 (64%), Positives = 262/323 (81%), Gaps = 4/323 (1%)
Query: 509 SRSQVIWRRPSERFV--PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAE 566
+RS W+ P ER P I+ + ET + S IET+V+KL++DLKS+SLDTQREATA
Sbjct: 386 TRSNTPWKFPEERHWRHPGIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATAR 444
Query: 567 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN 626
+R+LA+++ DNR+VIA C AI LV +L+S++ +IQ +AVT LLNLSINDNNKS IA +
Sbjct: 445 IRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESG 504
Query: 627 AIEPLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 685
AI PLIHVL+TG EA+ N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+ GKK
Sbjct: 505 AIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKK 564
Query: 686 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 745
DAATALFNLSI+HENK ++++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG
Sbjct: 565 DAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIG 624
Query: 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 805
+E GIPVLVEVVELGSARGKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R
Sbjct: 625 EEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTAR 684
Query: 806 AKEKAQALLSYFRNQRHGNAGRG 828
KEKAQ LL YF+ R N RG
Sbjct: 685 GKEKAQNLLKYFKAHRQSNQRRG 707
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 180/283 (63%), Positives = 224/283 (79%), Gaps = 1/283 (0%)
Query: 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 606
KLVEDLKS S + A AE+R L ++++NR+ I CGAI L+ +L+S E QE+AV
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535
Query: 607 TALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666
TALLNLSI++ NK+ I AIEPL+HVL TG+ A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct: 536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595
Query: 667 -GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 725
AI LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP MVD
Sbjct: 596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655
Query: 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 785
KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct: 656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 786 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR +G
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/271 (52%), Positives = 197/271 (72%), Gaps = 1/271 (0%)
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 607
L+ L+S + D QR A E+RLLAK N++NR+ IA GAI +LV++L SS+ + QE+AVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 608 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 667
ALLNLSI++NNK++I +++AI ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 726
AI PL++LL +G+PRGKKDAATA+FNL IY NK R V+AG V HL++ L+DP GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 727 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 786
A+++L+ LA P+G++ I + IP LVEV++ GS R +ENAAA L LC+ +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 787 LQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
G L LS++GT RAK KA ++L
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELM 598
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 7/299 (2%)
Query: 517 RPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD 576
+P PR VS+ + A+ ++ L+ L + + QR A E+RLLAK N D
Sbjct: 332 KPPSSLRPRKVSSFSSPAEAN------KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNAD 385
Query: 577 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ 636
NR+ IA GAI +LV +L + +++IQE++VTALLNLSI +NNK AI +A AI ++ VL+
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
GS EARENAAATLFSLSVI++NK+ IG GAI PLV LL GT RGKKDAATALFNL I
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505
Query: 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 755
Y NK + ++AG + L L+ +P +GMVD+A+A+LA L++ P+G+ IG + +P LVE
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE 565
Query: 756 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
+ GS R +ENAAA L+ LC+ + + G + PL+ L+ +GT R K KA LL
Sbjct: 566 FIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 191/286 (66%), Gaps = 2/286 (0%)
Query: 535 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 594
R SG + +R LV+ L S S + +R A +E+R L+K + DNR++IA GAI +LV++L
Sbjct: 323 RTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLL 382
Query: 595 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
S + QENA+T +LNLSI +NNK I A A+ ++ VL+ G+ EARENAAATLFSLS
Sbjct: 383 TSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS 442
Query: 655 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714
+ ++NKI IG SGAI LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V LV
Sbjct: 443 LADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALV 502
Query: 715 DLMDPAA--GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772
++ + MVD+A+ +L+ LA D + AI + N +P L+ +++ R +ENAAA L
Sbjct: 503 KMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAIL 562
Query: 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
L LC + + + GAV PL+ LS++GT R K KA +LL R
Sbjct: 563 LSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 190/273 (69%), Gaps = 1/273 (0%)
Query: 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ 602
T V L+E L + + + QR A ELRLLAK N+DNR+ IA GAI +LV++L S + + Q
Sbjct: 345 TFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQ 404
Query: 603 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662
E++VTALLNLSIN+ NK AI +A AI ++ VL+ GS EARENAAATLFSLSVI++NK+
Sbjct: 405 EHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVA 464
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAA 721
IG +GAI L+ LL GT RGKKDAATA+FNL IY NK+R V+ G V L L+ D
Sbjct: 465 IGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGG 524
Query: 722 GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781
GMVD+A+A+LA L+T +G+ AI + IPVLVE++ GS R +ENAAA L LC +
Sbjct: 525 GMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIE 584
Query: 782 FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
++ + GA L L+++GT RAK KA +LL
Sbjct: 585 RLNVAREVGADVALKELTENGTDRAKRKAASLL 617
|
Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 191/285 (67%), Gaps = 3/285 (1%)
Query: 537 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 596
DLSG + +R LV L S S++ +R A +E+R L+K + DNR++IA GAI +LV +L S
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394
Query: 597 -SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655
+T+ QENAVT +LNLSI ++NK I A A+ ++ VL+ GS EARENAAATLFSLS+
Sbjct: 395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
++NKI IG SGAI LVDLL G+ RGKKDAATALFNL IY NK R V+AG VK LV
Sbjct: 455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514
Query: 716 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
++ ++ M D+A+ +L+ LA+ + AI + N IP L++ ++ R +ENAAA LL
Sbjct: 515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
LC + + + GAV PL+ LS+ GT RAK KA +LL R
Sbjct: 575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 200/291 (68%), Gaps = 6/291 (2%)
Query: 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQ 602
++ +L+ L S + +R A E+RLLAK N NR+ IA GAI +LV++L S++++ Q
Sbjct: 356 KIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQ 415
Query: 603 ENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661
E+AVT++LNLSI NK I ++ A+ ++HVLQ GS EARENAAATLFSLSVI++NK+
Sbjct: 416 EHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKV 475
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPA 720
IG +GAI PLV LL G+ RGKKDAATALFNL I+ NK + V+AG V L+ L+ +P
Sbjct: 476 TIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE 535
Query: 721 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780
+GMVD+++++LA L++ PDG+ +G + +PVLV+ + GS R KEN+AA L+ LC+ +
Sbjct: 536 SGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQ 595
Query: 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL---SYFRNQRHGNAGRG 828
+ + G + L+ ++++GT R K KA LL S F +Q+ ++G G
Sbjct: 596 QHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLG 646
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/273 (49%), Positives = 188/273 (68%), Gaps = 3/273 (1%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ L+ L S + QR A AELRLLAK N +NR+ IA GAI +L+ +L SS+ + QE+
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664
AVTALLNLSI+++NK++I ++ A+ ++HVL+ GS EARENAAATLFSLSVI++ K+ IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488
Query: 665 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 723
GAI LV LLG G+ RGKKDAA ALFNL IY NK R ++AG V ++ L+ +P +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548
Query: 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 783
+D+A+A+L+ L++ P+G+ AIG +PVLVE++ G+ R +ENAAA +L LC+
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608
Query: 784 SMVLQE--GAVPPLVALSQSGTPRAKEKAQALL 814
+ + G + PL L+ +GT R K KA LL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 828 | ||||||
| 224081810 | 822 | predicted protein [Populus trichocarpa] | 0.974 | 0.981 | 0.728 | 0.0 | |
| 359480587 | 809 | PREDICTED: U-box domain-containing prote | 0.968 | 0.991 | 0.705 | 0.0 | |
| 255567955 | 799 | ubiquitin-protein ligase, putative [Rici | 0.920 | 0.953 | 0.692 | 0.0 | |
| 356565898 | 841 | PREDICTED: U-box domain-containing prote | 0.995 | 0.979 | 0.679 | 0.0 | |
| 356539692 | 838 | PREDICTED: U-box domain-containing prote | 0.995 | 0.983 | 0.681 | 0.0 | |
| 449463969 | 841 | PREDICTED: U-box domain-containing prote | 0.997 | 0.982 | 0.689 | 0.0 | |
| 28974687 | 790 | arm repeat-containing protein [Nicotiana | 0.948 | 0.993 | 0.657 | 0.0 | |
| 297825203 | 829 | armadillo/beta-catenin repeat family pro | 0.989 | 0.987 | 0.639 | 0.0 | |
| 334184386 | 826 | RING/U-box domain and ARM repeat-contain | 0.985 | 0.987 | 0.635 | 0.0 | |
| 240254516 | 829 | RING/U-box domain and ARM repeat-contain | 0.985 | 0.984 | 0.635 | 0.0 |
| >gi|224081810|ref|XP_002306495.1| predicted protein [Populus trichocarpa] gi|222855944|gb|EEE93491.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/843 (72%), Positives = 695/843 (82%), Gaps = 36/843 (4%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLL+VLLK IS+FLH+S D I D V+KYYQ+AE+ILKLLKPILD IV+S++ SD
Sbjct: 1 MEISLLEVLLKNISAFLHISKDDKISSDPVQKYYQKAEEILKLLKPILDTIVNSEVPSDA 60
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
VL K F+E GQS+DEL+E+ ENWQPL S+V+FVLQ+ESL SKI + GL+ LK+S Q
Sbjct: 61 VLNKDFQELGQSVDELKEIFENWQPLSSKVHFVLQIESLTSKICSLGLNSFQLLKASHQQ 120
Query: 121 FPGELSSTSLEL--CSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRS 178
P ELSS+SLE+ C QKIK Y QTSS+IKEAI DQ +GV PSSEILVK+++SL LRS
Sbjct: 121 LPDELSSSSLEVFNCIQKIKLSGYVQTSSIIKEAISDQEEGVGPSSEILVKISDSLCLRS 180
Query: 179 NQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPS 238
NQEILIEAVALEKLKENAEQAEK EAEF+DQ+I+LVTRMH+RLV+IKQSQ SPVPIP+
Sbjct: 181 NQEILIEAVALEKLKENAEQAEKTAEAEFIDQIITLVTRMHERLVLIKQSQTYSPVPIPA 240
Query: 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298
DFCCPLSLELMTDPVIVASGQTYERAFIK WI+LGL VCPKT+QTLAHT LI NYTVKAL
Sbjct: 241 DFCCPLSLELMTDPVIVASGQTYERAFIKNWIELGLTVCPKTQQTLAHTNLITNYTVKAL 300
Query: 299 IANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTN 358
IANWCE NNVKLPDP K+ S NQPSPL I ES ++T
Sbjct: 301 IANWCESNNVKLPDPIKSMSFNQPSPLL---------------------PISSESNQATG 339
Query: 359 SPAKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGLDIARIS-LTSSEDRFSNSEE 416
SP +N++S + REGSSPLH HSTSE+S S I GNG GLDIARIS LTSSE+R SNSEE
Sbjct: 340 SPGQNMISSSGIQREGSSPLHSHSTSESSLSVIVGNGQGLDIARISSLTSSEERSSNSEE 399
Query: 417 RSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQG---DANETSE 473
R+++ V S S S KE + S HNR+ASASS L + QG DANE+SE
Sbjct: 400 RNLDSVHHCSASPSRKEVSTAVRADGLLSQNHNRSASASSALGHAAFPQGASGDANESSE 459
Query: 474 LSNH-----SDASGEGKLESQPATTMR---REPEFPSRVMETRSRSQVIWRRPSERFVPR 525
SNH SD SGE K E Q ++ + REPEFPSR+++TRSRSQ IWRRPS+R VPR
Sbjct: 460 FSNHLTSYSSDISGEVKPEPQASSALHTPHREPEFPSRLVDTRSRSQTIWRRPSDRLVPR 519
Query: 526 IVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG 585
IVS+S ETRADL+GIET+VR LVEDLKST +DTQR+ATA+LRLLAKHNMDNR+VIAN G
Sbjct: 520 IVSSSAIETRADLAGIETEVRNLVEDLKSTLVDTQRDATAKLRLLAKHNMDNRIVIANFG 579
Query: 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 645
AI++LV++L S++ KIQENAVTALLNLSINDNNK+AI NA+AIEPLIHVL+TGSPEA+EN
Sbjct: 580 AISLLVNLLRSTDIKIQENAVTALLNLSINDNNKTAIGNADAIEPLIHVLETGSPEAKEN 639
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 705
+AATLFSLSVIEDNK++IGRSGAI PLVDLLGNGTPRGKKDAATALFNLSI+HENK RIV
Sbjct: 640 SAATLFSLSVIEDNKVRIGRSGAIVPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIV 699
Query: 706 QAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 765
QAGAVKHLV+LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIPVLVEVVELGSARGK
Sbjct: 700 QAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGK 759
Query: 766 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNA 825
ENAAAALLQLCTNSSRFC MVLQEGAVPPLVALSQSGTPRAKEKAQALLS+FRNQRHGNA
Sbjct: 760 ENAAAALLQLCTNSSRFCHMVLQEGAVPPLVALSQSGTPRAKEKAQALLSFFRNQRHGNA 819
Query: 826 GRG 828
GR
Sbjct: 820 GRA 822
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480587|ref|XP_002283956.2| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/835 (70%), Positives = 677/835 (81%), Gaps = 33/835 (3%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLLK LL KISSF LSS D+I + V+KYYQ+ E+ILKLLKPIL I+DS++ASDE
Sbjct: 1 MEISLLKRLLNKISSFFLLSSHDNIDSEPVRKYYQKIEEILKLLKPILSTIIDSEIASDE 60
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
+L KAFEE G+S+D+L+EL EN PL+S+VYFVLQ+E +SKIRTSGL+I QLKSS Q
Sbjct: 61 LLNKAFEELGRSVDDLQELFENCHPLMSKVYFVLQIELSISKIRTSGLEIFQQLKSSHQC 120
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELSS SLE C QK+KHM YEQTS++++EAIR+QV G SSE L+K+A+ LSLRSNQ
Sbjct: 121 LPDELSSASLETCIQKVKHMGYEQTSTILQEAIRNQVQGAGSSSESLMKLADCLSLRSNQ 180
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
E+LIEAVALEKLKENAEQAEK EAE++DQMI+L T+MHDR ++ KQSQ C+P+PIP+DF
Sbjct: 181 ELLIEAVALEKLKENAEQAEKTEEAEYIDQMITLATQMHDRFIITKQSQSCNPIPIPADF 240
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIVASGQTYERAFI+KW+DLGL VCPKTRQTLAHT LIPNYTVKALIA
Sbjct: 241 CCPLSLELMTDPVIVASGQTYERAFIRKWLDLGLTVCPKTRQTLAHTNLIPNYTVKALIA 300
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSP 360
NWCE NNVKLPDP K+ +LNQ SPL HA+ APRD+H PH+R +Q + PESTR T SP
Sbjct: 301 NWCESNNVKLPDPVKSLNLNQSSPLLAHAEPGAPRDAHNVPHSRASQPMSPESTRFTGSP 360
Query: 361 AKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSM 419
NLVS REG+SP HP S SE S SG+AGNG G DI E+RSM
Sbjct: 361 GNNLVSSGGIHREGTSPSHPRSRSEGSLSGVAGNGHGSDI---------------EDRSM 405
Query: 420 ELVGQPSMSKSIKEFPATIDTSEQSSHIHN--RTASASSVLSNLNLSQGDANETSELSNH 477
+ VGQPS P+ ++S + N RTASAS++ N N S+G + +
Sbjct: 406 DSVGQPST------LPSRKESSNSTGADANLCRTASASTLPCNANSSEGTLGADIGVYS- 458
Query: 478 SDASGEGKLESQPA----TTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAE 533
SD SGE E Q A TT +REP+FP R +ETR+RSQ +WRRPSERFVPRIVS+ E
Sbjct: 459 SDVSGEMTPEPQAAAANLTTPQREPDFPLR-LETRARSQAMWRRPSERFVPRIVSSPTTE 517
Query: 534 TRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM 593
TRADLSG+E QV++LVEDLKS S++TQREAT+ELRLLAKHNMDNR+VIANCGAI++LV++
Sbjct: 518 TRADLSGVEAQVQRLVEDLKSESVETQREATSELRLLAKHNMDNRIVIANCGAISLLVNL 577
Query: 594 LHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 653
L S + K QENAVTALLNLSINDNNK+AIANA AIEPLIHVLQTGSPEA+EN+AATLFSL
Sbjct: 578 LRSEDAKAQENAVTALLNLSINDNNKTAIANAQAIEPLIHVLQTGSPEAKENSAATLFSL 637
Query: 654 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 713
SVIEDNK IGRSGAI PLV+LLGNGTPRGKKDAATALFNLSI+HENK RIVQAGAV+HL
Sbjct: 638 SVIEDNKAAIGRSGAIAPLVELLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVRHL 697
Query: 714 VDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
V+LMDPAAGMVDKAVAVLANLATI +GR AI Q GIPVLVEVVELGSARGKENAAAALL
Sbjct: 698 VELMDPAAGMVDKAVAVLANLATITEGRHAIDQAGGIPVLVEVVELGSARGKENAAAALL 757
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
QLC+NSSR C VLQEGAVPPLVALSQSGTPRAKEKAQALL+ FR+ RH AGRG
Sbjct: 758 QLCSNSSRSCIKVLQEGAVPPLVALSQSGTPRAKEKAQALLNCFRS-RH--AGRG 809
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567955|ref|XP_002524955.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535790|gb|EEF37452.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/841 (69%), Positives = 657/841 (78%), Gaps = 79/841 (9%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLLK LL ISSFLHLSS D+I D+V+K YQ+AE+ILKLLKPILDAIVDS++ASDE
Sbjct: 25 MEISLLKALLSNISSFLHLSSIDNICSDLVQKCYQKAEEILKLLKPILDAIVDSEIASDE 84
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
VL KAF+E GQS+DELREL ENWQPL S+V+FVLQ+ESL+SKIRT GLDI LKSS ++
Sbjct: 85 VLTKAFDELGQSVDELRELFENWQPLSSKVFFVLQIESLISKIRTLGLDIFQLLKSSHEH 144
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELS++SL +
Sbjct: 145 LPDELSTSSL-------------------------------------------------E 155
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
EILIEAVALEKLKENAEQAEK EAE DQMISL SQ CS VPIP+DF
Sbjct: 156 EILIEAVALEKLKENAEQAEKPREAELFDQMISL-------------SQTCSHVPIPADF 202
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIV SGQTYERAFIK WI+LGL VCPKTRQTLAHT LIPNYTVKALIA
Sbjct: 203 CCPLSLELMTDPVIVGSGQTYERAFIKNWIELGLTVCPKTRQTLAHTNLIPNYTVKALIA 262
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSP 360
NWCE NNVKLPDP K+ S NQPS L +HA+S PR SH F ++RGNQ + PESTRST+SP
Sbjct: 263 NWCESNNVKLPDPVKSVSFNQPSALLIHAESGTPRGSHGF-YSRGNQPMSPESTRSTDSP 321
Query: 361 AKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSME 420
+N +S + RE +SP HP STS++S SGI GN GLD+ARISL SSE+R N E R+ +
Sbjct: 322 DRNWISSSVHRESTSPCHPRSTSDSSLSGIVGNEQGLDMARISLASSEERSVNLEGRNRD 381
Query: 421 LVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQG---DANETSELSNH 477
+ S+S S E + E + H+R ASASS+ N + SQG D N++SE+ NH
Sbjct: 382 SGVRHSVSPSRNEVSNAVRVGEPIAQSHSRNASASSI--NASFSQGAQVDTNDSSEVLNH 439
Query: 478 -----SDASGEGKLESQPATTM-----RREPEFPSRVMETRSRSQVIWRRPSERFVPRIV 527
SD SGE K E+Q +T + REPEF R +ETRSRSQ IWRRPS+R +PRIV
Sbjct: 440 LTSYSSDNSGEVKAETQASTALNSPRPHREPEFAPRFIETRSRSQTIWRRPSDRLIPRIV 499
Query: 528 STSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAI 587
S+ ETRADLSG+ETQVR LVEDLKS S+D QR ATAELRLLAKHNMDNR+VIANCGAI
Sbjct: 500 SSPAIETRADLSGVETQVRNLVEDLKSDSIDVQRAATAELRLLAKHNMDNRIVIANCGAI 559
Query: 588 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAA 647
NILV++L S++ KIQENAVTALLNLSINDNNK+AIANA+AI PLIHVL+TGSPEA+EN+A
Sbjct: 560 NILVNLLRSADAKIQENAVTALLNLSINDNNKTAIANADAIGPLIHVLETGSPEAKENSA 619
Query: 648 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA 707
ATLFSLSVIEDNK++IGRSGA+GPLVDLLGNGTPRGKKDAATALFNLSI+HENKARIVQA
Sbjct: 620 ATLFSLSVIEDNKVRIGRSGAVGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQA 679
Query: 708 GAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKEN 767
GAVKHLV+LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIPVLVEVVELGSARGKEN
Sbjct: 680 GAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKEN 739
Query: 768 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGR 827
AAAALLQLCTNS+RFC+ VLQEGAVPPLVALSQSGTPRAKEKAQALLS+FRNQRHGNA R
Sbjct: 740 AAAALLQLCTNSNRFCNTVLQEGAVPPLVALSQSGTPRAKEKAQALLSFFRNQRHGNA-R 798
Query: 828 G 828
G
Sbjct: 799 G 799
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565898|ref|XP_003551173.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/842 (67%), Positives = 674/842 (80%), Gaps = 18/842 (2%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLLK+++ +SSFLHLS ++ + V KYYQ+AE+I KLLKPI+DAIV+ +LASDE
Sbjct: 4 MEISLLKMIVNGMSSFLHLSFSGNMNSEPVSKYYQKAEEIHKLLKPIIDAIVNPELASDE 63
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
VL K EE G +++EL+E +ENW L S+VYFV+QVE L+S+IRTSGL+I QLK S
Sbjct: 64 VLNKILEEIGFAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKDSQHC 123
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELSS L+LCSQK+K + +E+ S +IKEAI + ++ V PSSE+L K+A+SL LRSNQ
Sbjct: 124 LPDELSSEYLQLCSQKLKLLGHEEISPVIKEAITEHLENVGPSSELLTKIADSLGLRSNQ 183
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
E+LIEAVALE+LKENAEQ EK EAEF+DQMI++VTRMH+RLVM+KQ+Q SPV IP+DF
Sbjct: 184 EVLIEAVALERLKENAEQTEKTAEAEFIDQMIAVVTRMHERLVMLKQAQSSSPVSIPADF 243
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIVASGQTYERAFIK WIDLGL VCPKTRQTL HT LIPNYTVKALIA
Sbjct: 244 CCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTHLIPNYTVKALIA 303
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTN-- 358
NWCE NNV+L DPTK+ +LNQ S L + +S R+S +F H+R NQ PES RS +
Sbjct: 304 NWCESNNVQLVDPTKSTNLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSCSFS 363
Query: 359 SPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERS 418
SPA NL S REG+SPLHP STSE S+ G+ NG +D+ARIS +DR ++S+E S
Sbjct: 364 SPANNLTSGGTQREGTSPLHPRSTSEGSFRGMV-NGQYMDLARISPEGLDDRSASSDESS 422
Query: 419 MELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNL---SQGDANETSELS 475
++ PSMS S +E + + + +HI R S SS LSN N +Q D N +LS
Sbjct: 423 VDSASHPSMSPSRRESSSAFSSEQSQTHI--RAVSDSSALSNANFPQETQDDDNNAPQLS 480
Query: 476 NHSDASGEGKLESQPAT---------TMRREPEFPSRVMETRSRSQVIWRRPSERFVPRI 526
+ S E E P T ++ REPEFP R +ETRSRSQ IWRRPSER VPRI
Sbjct: 481 TSAGHSREASGELNPGTETGGTTAVPSVHREPEFPLR-LETRSRSQAIWRRPSERHVPRI 539
Query: 527 VSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGA 586
VS+ ETRADLS IETQVR LVE L+S+ +DTQREATAELRLLAKHNMDNR+ IANCGA
Sbjct: 540 VSSPVVETRADLSAIETQVRNLVEGLRSSDVDTQREATAELRLLAKHNMDNRIAIANCGA 599
Query: 587 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENA 646
IN+LVD+L S++T IQENAVTALLNLSINDNNK+AIANA AIEPLIHVL+TGSPEA+EN+
Sbjct: 600 INLLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENS 659
Query: 647 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 706
AATLFSLSVIE+NKI IGRSGAIGPLV+LLG+GTPRGK+DAATALFNLSI+HENK RIVQ
Sbjct: 660 AATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKRDAATALFNLSIFHENKNRIVQ 719
Query: 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKE 766
AGAV+HLVDLMDPAAGMVDKAVAVLANLATIP+GR AIG E GIPVLVEVVELGSARGKE
Sbjct: 720 AGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKE 779
Query: 767 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAG 826
NAAAALL LC +S +F S VLQ+GAVPPLVALSQSGTPRAKEKAQALL+ F++QRHG++G
Sbjct: 780 NAAAALLHLCLHSPKFSSKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFKSQRHGSSG 839
Query: 827 RG 828
RG
Sbjct: 840 RG 841
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539692|ref|XP_003538329.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/842 (68%), Positives = 672/842 (79%), Gaps = 18/842 (2%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLLK+++ ISSFLHLS ++ V KYYQ+AE+ILKLLKPI+DAIV S+LASDE
Sbjct: 1 MEISLLKMIVNGISSFLHLSFSGNMNSAPVPKYYQKAEEILKLLKPIIDAIVYSELASDE 60
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
VL K EE +++EL+E +ENW L S+VYFV+QVE L+S+IRTSGL+I LQLK S
Sbjct: 61 VLNKILEEIDLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFLQLKDSQHC 120
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELSS L+ CSQK+K + +E+TS +I+EAI + ++ V PSSE+L K+A+SL LRSNQ
Sbjct: 121 LPDELSSEHLQHCSQKLKLLGHEETSPVIQEAITEHLENVGPSSELLSKIADSLGLRSNQ 180
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
E+LIEAVALE+LKENAEQ EK EAE +DQMI++VT MH+RLVM+KQ+Q SPVPIP+DF
Sbjct: 181 EVLIEAVALERLKENAEQTEKTAEAELIDQMIAVVTHMHERLVMLKQAQSISPVPIPADF 240
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIVASGQTYERAFIK WIDLGL VC KTRQTL HT LIPNYTVKALIA
Sbjct: 241 CCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCAKTRQTLVHTNLIPNYTVKALIA 300
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPES--TRSTN 358
NWCE NNV+L DPTK+ +LNQ L + +S R+S +F H+R NQ PES +RS +
Sbjct: 301 NWCESNNVQLVDPTKSTNLNQACVLHGYMESGTTRESPVFVHSRSNQPSSPESAGSRSFS 360
Query: 359 SPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERS 418
SPA NL S REG+SPLHP STSE S SG+ NG +D+ARIS +DR ++S+E S
Sbjct: 361 SPANNLTSGGTQREGTSPLHPRSTSEGSLSGMV-NGQYMDLARISPEGLDDRSASSDESS 419
Query: 419 MELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQ---GDANETSELS 475
++ PSMS S +E + + + +HI R S SS LSN N Q D N +LS
Sbjct: 420 VDSASHPSMSPSRRESSSAFSSEQSQTHI--RAVSDSSALSNANFPQETEDDNNNAPQLS 477
Query: 476 NHSDASGE--GKLESQPAT-------TMRREPEFPSRVMETRSRSQVIWRRPSERFVPRI 526
+ S E G+L P T ++ REPEFP R +ETRSRSQ IWRRPSER VPRI
Sbjct: 478 TSAGHSREASGELNPGPETAGTTSVASVHREPEFPLR-LETRSRSQAIWRRPSERHVPRI 536
Query: 527 VSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGA 586
VS+ ETRADLS IETQVR LVE LKS+ +DTQREATAELRLLAKHNMDNR+ IANCGA
Sbjct: 537 VSSPVVETRADLSAIETQVRNLVEGLKSSDVDTQREATAELRLLAKHNMDNRIAIANCGA 596
Query: 587 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENA 646
IN+LVD+L S++T IQENAVTALLNLSINDNNK+AIANA AIEPLIHVL+TGSPEA+EN+
Sbjct: 597 INVLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLKTGSPEAKENS 656
Query: 647 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 706
AATLFSLSVIE+NKI IGRSGAIGPLV+LLG+GTPRGKKDAATALFNLSI+HENK IVQ
Sbjct: 657 AATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKKDAATALFNLSIFHENKNWIVQ 716
Query: 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKE 766
AGAV+HLVDLMDPAAGMVDKAVAVLANLATIP+GR AIG E GIPVLVEVVELGSARGKE
Sbjct: 717 AGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKE 776
Query: 767 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAG 826
NAAAALL LC +S+++ VLQ+GAVPPLVALSQSGTPRAKEKAQALL+ FR+QRHG+AG
Sbjct: 777 NAAAALLHLCLHSTKYLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGSAG 836
Query: 827 RG 828
RG
Sbjct: 837 RG 838
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463969|ref|XP_004149702.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] gi|449524872|ref|XP_004169445.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/843 (68%), Positives = 667/843 (79%), Gaps = 17/843 (2%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
M +SLLKVLL+ ISSFL LSS D I L KYY + E LKLL+PILDA+VDSD+ASDE
Sbjct: 1 MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDE 60
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
L +AFEE S+DELR L ENWQPL S+VYFVLQ E+L+SKI LDI L+SS +
Sbjct: 61 ELTQAFEELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNEN 120
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELSS SLE C QKIK++ E+ SS+IK+AIR+QVDG+APSS++LVK+A+SLSLRSNQ
Sbjct: 121 LPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQ 180
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
ILIEAVALEKLKE+AEQAE GEAE +DQMI LVTRMH+RL+MIKQSQ SPV IP DF
Sbjct: 181 AILIEAVALEKLKESAEQAENTGEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVSIPPDF 240
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIVASGQTYER FIK WID GL VCPKTRQTL HT LIPNYTVKALIA
Sbjct: 241 CCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIA 300
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSP 360
NWC+ NNVKL DP+K+ +LNQ SPL V + +FPH+ G Q + P+STRS S
Sbjct: 301 NWCDTNNVKLSDPSKSVNLNQISPLLVGSFEPDTHREPLFPHSPGYQPMSPQSTRSAGS- 359
Query: 361 AKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSM 419
KN SL T R+GSS L PHS SE S S AG+ +++ R+ L+SSED+ + EE
Sbjct: 360 GKNSNSLGGTHRDGSSSLLPHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGC 419
Query: 420 ELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQG---DANETSELSN 476
+ V +PSMS S + E S NR++S SS +SN N S+G +ANE + LS
Sbjct: 420 DPVAKPSMSPSRTNVLNSCGEDEPSHSH-NRSSSTSSGVSNANHSRGTSGEANEATHLST 478
Query: 477 H-----SDASGEGKLESQPA---TTMRREPE--FPSRVME-TRSRSQVIWRRPSERFVPR 525
+ SDA+GE K E A TT REPE P R+ + R R +W RPSERF R
Sbjct: 479 NLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASR 538
Query: 526 IVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG 585
I+++S ETR DLS IE QV+K+VE+LKS+SLDT R ATAELRLLAKHNMDNR+VIA CG
Sbjct: 539 IITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCG 598
Query: 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 645
AI+ LV +L S ++KIQENAVTALLNLSINDNNKSAIA ANAIEPLIHVL+TGSPEA+EN
Sbjct: 599 AIDYLVGLLLSEDSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKEN 658
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 705
+AATLFSLSVIE+NK+KIGRSGAIGPLV+LLGNGTPRGKKDAATALFNLSI+HENKARIV
Sbjct: 659 SAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIV 718
Query: 706 QAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 765
QAGAV+HLV+LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIPVLVEVVELGSARGK
Sbjct: 719 QAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGK 778
Query: 766 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNA 825
ENAAAALLQLCT S+R CSMVLQEGAVPPLVALSQSGT RAKEKAQALLS+FR+QRHGN+
Sbjct: 779 ENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNS 838
Query: 826 GRG 828
GRG
Sbjct: 839 GRG 841
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28974687|gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/833 (65%), Positives = 645/833 (77%), Gaps = 48/833 (5%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEISLLKVLL IS F HLSS D I ++V++YY + EDILKL+KPILDAIVD + AS E
Sbjct: 1 MEISLLKVLLNNISCFSHLSSSDHISGELVRRYYCKIEDILKLVKPILDAIVDVEAASGE 60
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
+L KAF Q +DELREL E +PL S+VYFVLQ E L+ KIR+ L+I+ LKSS +
Sbjct: 61 LLLKAFAGLAQCVDELRELFETLEPLCSKVYFVLQAEPLIGKIRSCSLEILELLKSSHKS 120
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P +++ T+LEL KIK+++YE S I + I+ QV+G+ SS+ K+A+ LSL SNQ
Sbjct: 121 LPADVTLTTLELYILKIKYVDYEMISVTITKVIKAQVEGLGTSSDSFAKIADCLSLNSNQ 180
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
E+LIE VALEKLKENAEQAEK+ E+++QMI+LV+ MHD V KQSQ C+ VPIP DF
Sbjct: 181 ELLIELVALEKLKENAEQAEKSEVVEYIEQMITLVSHMHDCFVTTKQSQSCTAVPIPPDF 240
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CCPLSLELMTDPVIVASGQTYERAFI++WIDLGL VCPKTRQTL HT LIPNYTVKALIA
Sbjct: 241 CCPLSLELMTDPVIVASGQTYERAFIRRWIDLGLTVCPKTRQTLGHTNLIPNYTVKALIA 300
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQIMPESTRSTNSP 360
NWCE+NNVKLPDP K+ SLNQPS + P+ST+S+ SP
Sbjct: 301 NWCEINNVKLPDPMKSLSLNQPS-------------------------LSPDSTQSSGSP 335
Query: 361 AKNLVSLN-NTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSM 419
K+L+S + RE SSP HP S+SE S G+ GN D+ R+ + SEDR ++S E S
Sbjct: 336 RKSLISSTVSQREESSPSHPRSSSEESLPGVGGNILAFDVERMRI-KSEDRMAHSGEISS 394
Query: 420 ELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQ---GDANETSELSN 476
G ++ +FP HNRT SA S LSN N S GD N+ SE +
Sbjct: 395 H--GHSTLVAD-DQFPLG----------HNRTTSAPSTLSNSNFSPVIPGDGNKLSE--D 439
Query: 477 HSDASGEGKLESQPA-TTMRREPEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETR 535
S ASG+ L+S+PA + + +EPEFP E R R+Q+IWRRP+ERF PRIVS++ E R
Sbjct: 440 SSVASGDVGLDSKPAASVLPKEPEFP-YTPEMRPRNQLIWRRPTERF-PRIVSSATVERR 497
Query: 536 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH 595
ADLS +E QV+KL+E+LKSTSLD QR ATAELRLLAKHNMDNRMVIANCGAI+ LV++LH
Sbjct: 498 ADLSEVEEQVKKLIEELKSTSLDMQRNATAELRLLAKHNMDNRMVIANCGAISSLVNLLH 557
Query: 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655
S + K+QE+AVTALLNLSINDNNK AIANA+AIEPLIHVLQTGS EA+EN+AATLFSLSV
Sbjct: 558 SKDMKVQEDAVTALLNLSINDNNKCAIANADAIEPLIHVLQTGSAEAKENSAATLFSLSV 617
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
+E+NK+KIGRSGAI PLVDLLGNGTPRGKKDAATALFNLSI HENK+RI+QAGAVK+LV+
Sbjct: 618 MEENKMKIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSILHENKSRIIQAGAVKYLVE 677
Query: 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
LMDPA GMVDKAVAVL+NLATIP+GR IGQE GIP+LVEVVELGSARGKENAAAALLQL
Sbjct: 678 LMDPATGMVDKAVAVLSNLATIPEGRAEIGQEGGIPLLVEVVELGSARGKENAAAALLQL 737
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
CTNSSRFC+MVLQEGAVPPLVALSQSGTPRA+EKAQ LLSYFRNQRHGNAGRG
Sbjct: 738 CTNSSRFCNMVLQEGAVPPLVALSQSGTPRAREKAQQLLSYFRNQRHGNAGRG 790
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297825203|ref|XP_002880484.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297326323|gb|EFH56743.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/838 (63%), Positives = 640/838 (76%), Gaps = 19/838 (2%)
Query: 1 MEISLLKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDE 60
MEI LKVL+ ISSFL+LSS I LD +KYY+R E++LK+LKPI D +V+SDL DE
Sbjct: 1 MEI--LKVLIGSISSFLNLSSSKHIDLDPFEKYYKRVEELLKVLKPIADVVVNSDLVLDE 58
Query: 61 VLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQY 120
L KAFEE Q +D+ +L +WQ S+VYFVLQ+ESL+ K+R + +D L SS +
Sbjct: 59 KLGKAFEELTQDVDQSIDLFRSWQAFSSKVYFVLQIESLIPKMRDTIVDTFKFLMSSKNH 118
Query: 121 FPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQ 180
P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DGV PS EILVK+ E+ LRSNQ
Sbjct: 119 LPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQ 178
Query: 181 EILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDF 240
EILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH+RL++IKQ+Q S V I +DF
Sbjct: 179 EILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADF 237
Query: 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 300
CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIA
Sbjct: 238 FCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIA 297
Query: 301 NWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNS 359
NWCE N+VKLPDP K+ SLN+ SPL DS + + H N+ S+ T
Sbjct: 298 NWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSAHKVSNKSHDWDASSSETGK 357
Query: 360 PAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSM 419
P+ S REG+SP P S S G++GNG GLD R SL EDR ++S E
Sbjct: 358 PS--FSSRATGREGASPSRPASALGASSPGVSGNGYGLDARRGSLNDFEDRSNDSREMKT 415
Query: 420 ELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-- 477
+ G+ S+S + + +++ + S + H+R+ SA+S +SN + DANE SE S H
Sbjct: 416 DAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHAT 472
Query: 478 ---SDASGE---GKLESQPATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTS 530
SDASGE G L + + RR+ +F + M+ RSR Q WRRPSER RIVS
Sbjct: 473 PYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRSRGQ-FWRRPSERLGSRIVSAP 531
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +L
Sbjct: 532 SNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLL 591
Query: 591 VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 650
V++L+SS++ QENAVTALLNLSINDNNK+AIA+A AIEPLI+VL+ GS EA+EN+AATL
Sbjct: 592 VELLYSSDSATQENAVTALLNLSINDNNKTAIADAGAIEPLIYVLENGSSEAKENSAATL 651
Query: 651 FSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710
FSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV
Sbjct: 652 FSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKATIVQSGAV 711
Query: 711 KHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770
++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAA
Sbjct: 712 RYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAA 771
Query: 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
ALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 772 ALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184386|ref|NP_001189583.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|357529165|sp|O22193.3|PUB4_ARATH RecName: Full=U-box domain-containing protein 4; AltName: Full=Plant U-box protein 4 gi|330252324|gb|AEC07418.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/833 (63%), Positives = 634/833 (76%), Gaps = 17/833 (2%)
Query: 6 LKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKA 65
++VLL+ ISSFL+LSS I LD +KYY+R E++L++LKPI D +V SD DE L KA
Sbjct: 1 MEVLLRSISSFLNLSSSKHIDLDPFEKYYKRVEELLRVLKPIADVVVTSDFVFDEKLGKA 60
Query: 66 FEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGEL 125
FEE Q +D+ +L +WQ S+VYFVLQ+ESL+ K+R + +D L SS + P EL
Sbjct: 61 FEELTQDVDQSIDLFRSWQAFSSKVYFVLQIESLLPKMRDTIVDTFQFLMSSKNHLPDEL 120
Query: 126 SSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIE 185
S SLE C +KIKH+ YE+ SS+I A+RDQ DGV PS EILVK+ E+ LRSNQEILIE
Sbjct: 121 SPASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIE 180
Query: 186 AVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLS 245
AVALE+ KE AEQ+E E EF+DQ+I +V RMH+RL++IKQ+Q S V I +DF CPLS
Sbjct: 181 AVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLS 239
Query: 246 LELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 305
LE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE
Sbjct: 240 LEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCET 299
Query: 306 NNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNL 364
N+VKLPDP K+ SLN+ SPL DS + + N+ S+ T P+
Sbjct: 300 NDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--F 357
Query: 365 VSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQ 424
S REG+SP P S S GI+GNG GLD R SL EDR ++S E + G+
Sbjct: 358 SSRATEREGASPSRPASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGR 417
Query: 425 PSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SD 479
S+S + + +++ + S + H+R+ SA+S +SN + DANE SE S H SD
Sbjct: 418 SSVSSTTR---GSVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSD 474
Query: 480 ASGE---GKLESQPATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETR 535
ASGE G L + + RR+ +F + M+ R+R Q WRRPSER RIVS ETR
Sbjct: 475 ASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETR 533
Query: 536 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH 595
DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+
Sbjct: 534 RDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLY 593
Query: 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655
S+++ QENAVTALLNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSV
Sbjct: 594 STDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSV 653
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
IE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+D
Sbjct: 654 IEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLID 713
Query: 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL
Sbjct: 714 LMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQL 773
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 774 STNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 826
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254516|ref|NP_179895.6| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|330252323|gb|AEC07417.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/833 (63%), Positives = 634/833 (76%), Gaps = 17/833 (2%)
Query: 6 LKVLLKKISSFLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKA 65
++VLL+ ISSFL+LSS I LD +KYY+R E++L++LKPI D +V SD DE L KA
Sbjct: 4 MEVLLRSISSFLNLSSSKHIDLDPFEKYYKRVEELLRVLKPIADVVVTSDFVFDEKLGKA 63
Query: 66 FEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGEL 125
FEE Q +D+ +L +WQ S+VYFVLQ+ESL+ K+R + +D L SS + P EL
Sbjct: 64 FEELTQDVDQSIDLFRSWQAFSSKVYFVLQIESLLPKMRDTIVDTFQFLMSSKNHLPDEL 123
Query: 126 SSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIE 185
S SLE C +KIKH+ YE+ SS+I A+RDQ DGV PS EILVK+ E+ LRSNQEILIE
Sbjct: 124 SPASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIE 183
Query: 186 AVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLS 245
AVALE+ KE AEQ+E E EF+DQ+I +V RMH+RL++IKQ+Q S V I +DF CPLS
Sbjct: 184 AVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLS 242
Query: 246 LELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 305
LE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE
Sbjct: 243 LEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCET 302
Query: 306 NNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQ-QIMPESTRSTNSPAKNL 364
N+VKLPDP K+ SLN+ SPL DS + + N+ S+ T P+
Sbjct: 303 NDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPS--F 360
Query: 365 VSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQ 424
S REG+SP P S S GI+GNG GLD R SL EDR ++S E + G+
Sbjct: 361 SSRATEREGASPSRPASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGR 420
Query: 425 PSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSELSNH-----SD 479
S+S + + +++ + S + H+R+ SA+S +SN + DANE SE S H SD
Sbjct: 421 SSVSSTTR---GSVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSD 477
Query: 480 ASGE---GKLESQPATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETR 535
ASGE G L + + RR+ +F + M+ R+R Q WRRPSER RIVS ETR
Sbjct: 478 ASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETR 536
Query: 536 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH 595
DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+
Sbjct: 537 RDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLY 596
Query: 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655
S+++ QENAVTALLNLSINDNNK AIA+A AIEPLIHVL+ GS EA+EN+AATLFSLSV
Sbjct: 597 STDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSV 656
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
IE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+D
Sbjct: 657 IEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLID 716
Query: 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
LMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL
Sbjct: 717 LMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQL 776
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 777 STNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 828 | ||||||
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.971 | 0.969 | 0.613 | 4.6e-247 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.431 | 0.504 | 0.567 | 2.8e-187 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.340 | 0.371 | 0.614 | 1.3e-141 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.322 | 0.436 | 0.5 | 3.8e-91 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.352 | 0.462 | 0.476 | 1e-90 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.352 | 0.442 | 0.454 | 7.1e-90 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.327 | 0.410 | 0.477 | 2.7e-86 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.342 | 0.464 | 0.472 | 7.2e-86 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.351 | 0.419 | 0.459 | 1.5e-85 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.340 | 0.449 | 0.477 | 7.4e-82 |
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2380 (842.9 bits), Expect = 4.6e-247, P = 4.6e-247
Identities = 504/821 (61%), Positives = 604/821 (73%)
Query: 18 HLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELR 77
+LSS I LD +KYY+R E++L++LKPI D +V SD DE L KAFEE Q +D+
Sbjct: 16 NLSSSKHIDLDPFEKYYKRVEELLRVLKPIADVVVTSDFVFDEKLGKAFEELTQDVDQSI 75
Query: 78 ELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKI 137
+L +WQ S+VYFVLQ+ESL+ K+R + +D L SS + P ELS SLE C +KI
Sbjct: 76 DLFRSWQAFSSKVYFVLQIESLLPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKI 135
Query: 138 KHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAE 197
KH+ YE+ SS+I A+RDQ DGV PS EILVK+ E+ LRSNQEILIEAVALE+ KE AE
Sbjct: 136 KHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAE 195
Query: 198 QAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVAS 257
Q+E E EF+DQ+I +V RMH+RL++IKQ+Q S V I +DF CPLSLE+MTDPVIV+S
Sbjct: 196 QSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSS 254
Query: 258 GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTA 317
GQTYE+AFIK+WIDLGL VCPKTRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+
Sbjct: 255 GQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKST 314
Query: 318 SLNQPSPLFVHADSNAPRDSHIFPHTRGNQQI-MPESTRSTNSPAKNLVSLNNTREGSSP 376
SLN+ SPL DS + + N+ S+ T P+ + S REG+SP
Sbjct: 315 SLNELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPSFS--SRATEREGASP 372
Query: 377 LHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPA 436
P S S GI+GNG GLD R SL EDR ++S E + G+ S+S + +
Sbjct: 373 SRPASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---G 429
Query: 437 TIDTSEQSSHIHNRTXXXXXXXXXXXXXQGDANETSELSNH-----SDASGE---GKLES 488
+++ + S + H+R+ + DANE SE S H SDASGE G L +
Sbjct: 430 SVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAA 489
Query: 489 QPATTMRRE-PEFPSRVMETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRK 547
+ RR+ +F + M+ R+R Q WRRPSER RIVS ETR DLS +ETQV+K
Sbjct: 490 TTSAATRRDLSDFSPKFMDRRTRGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKK 548
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 607
LVE+LKS+SLDTQR+ATAELRLLAKHNMDNR+VI N GAI +LV++L+S+++ QENAVT
Sbjct: 549 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVT 608
Query: 608 ALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 667
ALLNLS EPLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SG
Sbjct: 609 ALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSG 668
Query: 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKA 727
AIGPLVDLLGNGTPRGKKDAATALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKA
Sbjct: 669 AIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKA 728
Query: 728 VAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 787
VAVLANLATIP+GR AIGQE GIP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVL
Sbjct: 729 VAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVL 788
Query: 788 QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
QEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQRHGNAGRG
Sbjct: 789 QEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGRG 829
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 2.8e-187, Sum P(2) = 2.8e-187
Identities = 207/365 (56%), Positives = 265/365 (72%)
Query: 467 DANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFV--P 524
DA E ++ + S AS G + T R R + +RS W+ P ER P
Sbjct: 348 DAEELRQVFSRS-ASAPGIVSEVVCKTKRNNNAAADRSL---TRSNTPWKFPEERHWRHP 403
Query: 525 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC 584
I+ + ET + S IET+V+KL++DLKS+SLDTQREATA +R+LA+++ DNR+VIA C
Sbjct: 404 GIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARC 462
Query: 585 GAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGS-PEAR 643
AI LV +L+S++ +IQ +AVT LLNLS PLIHVL+TG EA+
Sbjct: 463 EAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAK 522
Query: 644 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 703
N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+ GKKDAATALFNLSI+HENK +
Sbjct: 523 ANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTK 582
Query: 704 IVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763
+++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG+E GIPVLVEVVELGSAR
Sbjct: 583 VIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSAR 642
Query: 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 823
GKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R KEKAQ LL YF+ R
Sbjct: 643 GKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQS 702
Query: 824 NAGRG 828
N RG
Sbjct: 703 NQRRG 707
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 1.3e-141, Sum P(3) = 1.3e-141
Identities = 174/283 (61%), Positives = 215/283 (75%)
Query: 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 606
KLVEDLKS S + A AE+R L ++++NR+ I CGAI L+ +L+S E QE+AV
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535
Query: 607 TALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666
TALLNLS EPL+HVL TG+ A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct: 536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595
Query: 667 GA-IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 725
A I LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP MVD
Sbjct: 596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655
Query: 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 785
KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct: 656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 786 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 828
VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR +G
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 134/268 (50%), Positives = 183/268 (68%)
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 607
L+ L+S + D QR A E+RLLAK N++NR+ IA GAI +LV++L SS+ + QE+AVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 608 ALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 667
ALLNLS ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 726
AI PL++LL +G+PRGKKDAATA+FNL IY NK R V+AG V HL++ L+DP GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 727 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 786
A+++L+ LA P+G++ I + IP LVEV++ GS R +ENAAA L LC+ +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 787 LQEGAVPPLVALSQSGTPRAKEKAQALL 814
G L LS++GT RAK KA ++L
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSIL 595
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 141/296 (47%), Positives = 187/296 (63%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
G + +D T V L+E L + + + QR A ELRLLAK N+DNR+ IA GAI +L
Sbjct: 335 GGSSSSDCD--RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLL 392
Query: 591 VDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATL 650
V++L S + + QE++VTALLNLS ++ VL+ GS EARENAAATL
Sbjct: 393 VELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATL 452
Query: 651 FSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710
FSLSVI++NK+ IG +GAI L+ LL GT RGKKDAATA+FNL IY NK+R V+ G V
Sbjct: 453 FSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIV 512
Query: 711 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAA 769
L L+ D GMVD+A+A+LA L+T +G+ AI + IPVLVE++ GS R +ENAA
Sbjct: 513 DPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAA 572
Query: 770 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNA 825
A L LC + ++ + GA L L+++GT RAK KA +LL + Q G A
Sbjct: 573 AILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ-QTEGVA 627
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
Identities = 136/299 (45%), Positives = 187/299 (62%)
Query: 517 RPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD 576
+P PR VS+ + A+ ++ L+ L + + QR A E+RLLAK N D
Sbjct: 332 KPPSSLRPRKVSSFSSPAEAN------KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNAD 385
Query: 577 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQ 636
NR+ IA GAI +LV +L + +++IQE++VTALLNLS ++ VL+
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
GS EARENAAATLFSLSVI++NK+ IG GAI PLV LL GT RGKKDAATALFNL I
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505
Query: 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 755
Y NK + ++AG + L L+ +P +GMVD+A+A+LA L++ P+G+ IG + +P LVE
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE 565
Query: 756 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
+ GS R +ENAAA L+ LC+ + + G + PL+ L+ +GT R K KA LL
Sbjct: 566 FIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
|
|
| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 130/272 (47%), Positives = 180/272 (66%)
Query: 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
+V LVE L S+ L+ QR + ++RLLA+ N +NR++IAN GAI +LV +L ++ IQE
Sbjct: 380 EVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQE 439
Query: 604 NAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
NAVT LLNLS +I +L+ G+ EAREN+AA LFSLS++++NK+ I
Sbjct: 440 NAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTI 499
Query: 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAG 722
G S I PLVDLL +GT RGKKDA TALFNLS+ NK R + AG V+ L++L+ D G
Sbjct: 500 GLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLG 559
Query: 723 MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 782
M+D+A+++L LA+ P+GR AIGQ + I LVE + G+ + KE A + LL+L +N+S F
Sbjct: 560 MIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSF 619
Query: 783 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
LQ G LV ++ SGT RA+ KA AL+
Sbjct: 620 ILAALQFGVYEYLVEITTSGTNRAQRKANALI 651
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 135/286 (47%), Positives = 182/286 (63%)
Query: 535 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 594
R SG + +R LV+ L S S + +R A +E+R L+K + DNR++IA GAI +LV++L
Sbjct: 323 RTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLL 382
Query: 595 HSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLS 654
S + QENA+T +LNLS ++ VL+ G+ EARENAAATLFSLS
Sbjct: 383 TSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS 442
Query: 655 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714
+ ++NKI IG SGAI LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V LV
Sbjct: 443 LADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALV 502
Query: 715 DLMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772
++ + MVD+A+ +L+ LA D + AI + N +P L+ +++ R +ENAAA L
Sbjct: 503 KMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAIL 562
Query: 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
L LC + + + GAV PL+ LS++GT R K KA +LL R
Sbjct: 563 LSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 135/294 (45%), Positives = 182/294 (61%)
Query: 524 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN 583
P+ + T A S + L+ L S + QR A AELRLLAK N +NR+ IA
Sbjct: 348 PKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAE 407
Query: 584 CGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEAR 643
GAI +L+ +L SS+ + QE+AVTALLNLS ++HVL+ GS EAR
Sbjct: 408 AGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEAR 467
Query: 644 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 703
ENAAATLFSLSVI++ K+ IG GAI LV LLG G+ RGKKDAA ALFNL IY NK R
Sbjct: 468 ENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGR 527
Query: 704 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 762
++AG V ++ L+ +P ++D+A+A+L+ L++ P+G+ AIG +PVLVE++ G+
Sbjct: 528 AIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTP 587
Query: 763 RGKENAAAALLQLCTNSSRFCSMV-LQE-GAVPPLVALSQSGTPRAKEKAQALL 814
R +ENAAA +L LC+ + QE G + PL L+ +GT R K KA LL
Sbjct: 588 RNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641
|
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| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 136/285 (47%), Positives = 182/285 (63%)
Query: 537 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 596
DLSG + +R LV L S S++ +R A +E+R L+K + DNR++IA GAI +LV +L S
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394
Query: 597 S-ETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSV 655
+T+ QENAVT +LNLS ++ VL+ GS EARENAAATLFSLS+
Sbjct: 395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715
++NKI IG SGAI LVDLL G+ RGKKDAATALFNL IY NK R V+AG VK LV
Sbjct: 455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514
Query: 716 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
++ ++ M D+A+ +L+ LA+ + AI + N IP L++ ++ R +ENAAA LL
Sbjct: 515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
LC + + + GAV PL+ LS+ GT RAK KA +LL R
Sbjct: 575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22193 | PUB4_ARATH | 6, ., 3, ., 2, ., - | 0.6350 | 0.9855 | 0.9878 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.4__246__AT2G23140.1 | annotation not avaliable (829 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 828 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 3e-25 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 7e-22 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-18 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-17 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-14 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 8e-13 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-12 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-10 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 5e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-08 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-07 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 6e-06 | |
| pfam05804 | 708 | pfam05804, KAP, Kinesin-associated protein (KAP) | 1e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 8e-05 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 8e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 5e-04 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 6e-04 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 0.003 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.003 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.004 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-25
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298
+F CP+SLE+M DPVI+ SGQTYER+ I+KW+ P T Q L H LIPN +K+
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHGT-DPVTGQPLTHEDLIPNLALKSA 59
Query: 299 IANW 302
I W
Sbjct: 60 IQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 7e-22
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
IP +F P++LELM DPVI+ SG TY+R+ I++ + P TR+ L H LIPN +
Sbjct: 1 IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60
Query: 296 KALIANWCELN 306
K I W E N
Sbjct: 61 KEKIDAWLEEN 71
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ LV L S+ + QREA L L+ N DN + G + LV +L S + ++ +
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68
Query: 605 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
A+ AL NL+ ++NK + A + L+++L + + + ++NA L +L+
Sbjct: 69 ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-17
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 580 VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQTG 638
+ G + LV +L SS+ +Q A AL NLS +N N A+ A + L+ +L++
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 639 SPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695
E + A L +L+ EDNK+ + +G + LV+LL + +K+A AL NL+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 15/269 (5%)
Query: 558 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND 616
D Q E L L + + +L+ +L S + QE AV L L+ D
Sbjct: 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478
Query: 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDL 675
+K AI A I PL+ +L+TGS +A+E++A L++L ED + + +GA+ L+ L
Sbjct: 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538
Query: 676 LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLA 735
L NG P+G++ AA L L + + A I Q A+ L DL + ++D VL+ +A
Sbjct: 539 LKNGGPKGQEIAAKTLTKL-VRTADAATISQLTAL-LLGDLPESKVHVLDVLGHVLS-VA 595
Query: 736 TIPDGRVAIGQE-----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG 790
++ D + +E + + L++++ +E AA+ L + ++ C + +
Sbjct: 596 SLED----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651
Query: 791 AVPPLVALSQSGTPR-AKEKAQALLSYFR 818
+ P + L + T A + A+AL + R
Sbjct: 652 IINPCIKLLTNNTEAVATQSARALAALSR 680
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-14
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG 679
A+ A + L+ +L + + AA L +LS DN + +G + LV LL +
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 680 TPRGKKDAATALFNLSIYHENKARIV-QAGAVKHLVDLMDPAAGMVDK-AVAVLANLAT 736
K A AL NL+ E+ IV +AG V LV+L+D + + K A L+NLA+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 8e-13
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 15/227 (6%)
Query: 590 LVDMLHSSETKIQ--ENAVTALLNLS-INDNNKSAI-ANANAIEPLIHVLQTGSPEAREN 645
++ L + + Q E LL L+ + + AI +++ A+ L+ +L++G+ A+ N
Sbjct: 18 CIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVN 77
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----HENK 701
AAA L L ED ++K+ G I PL+ LL +G+ +K AA A++ +S H
Sbjct: 78 AAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137
Query: 702 ARIVQAGAVKHLVDLMDPAAGMVDKAV-----AVLANLATIPDGRVAIG-QENGIPVLVE 755
G V L D + P DK V L NL DG + + G+ +LV+
Sbjct: 138 KIFSTEGVVPSLWDQLQP-GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVK 196
Query: 756 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802
++ G++ + NAA+ L +L S VL GAV L+ L G
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-12
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DP 719
+ ++G + LV LL + +++AA AL NLS ++N +V+AG + LV L+
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 720 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777
+V A+ L NLA D ++ + + G+P LV +++ + ++NA AL L +
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 57/317 (17%)
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 607
LV+ L++ S + ++ L L H+ D R + + GA+ L+ +L + K QE A
Sbjct: 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552
Query: 608 ALLNL--------------------------------------SINDNNKSAIANANAIE 629
L L S+ D + A +A+
Sbjct: 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612
Query: 630 PLIHVLQTGSPEARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 686
LI +L + E +E AA A +FS +D + I P + LL N T
Sbjct: 613 TLIQLLSSSKEETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNTEAVATQ 670
Query: 687 AATALFNL--SIYHENKARIVQAGAVKHLVDL-----MDPAAGMVDKAVAVLANLATIPD 739
+A AL L SI K A+K L+ L ++ A ++AV LANL + P+
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA----EQAVCALANLLSDPE 726
Query: 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN---SSRFCSMVLQEGAVPPLV 796
E+ I L V+ G+ GK NAA AL QL + V G V LV
Sbjct: 727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV 786
Query: 797 ALSQSGTPRAKEKAQAL 813
L S + ++AL
Sbjct: 787 DLLNSTDLDSSATSEAL 803
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+R L++ L S+ +TQ +A + L + D +A IN + +L ++ +
Sbjct: 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ 670
Query: 605 AVTAL--LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662
+ AL L+ SI +N K + A +AI+PLI + ++ S E E A L +L + +
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN----KARIVQAGAVKHLVDLMD 718
I PL +L GT GK++AA AL L + K + G V LVDL++
Sbjct: 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN 790
Query: 719 PAAGMVDKAVAVLANLA 735
L LA
Sbjct: 791 STDLDSSATSEALEALA 807
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 65/305 (21%)
Query: 537 DLSGIETQVRKLVEDLKSTSLDTQRE--ATAELRLLAKHNMDNRMVI-ANCGAINILVDM 593
D G V + +E L++ S Q + TA L LAK + R I ++ A+ +LV +
Sbjct: 7 DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSL 66
Query: 594 LHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF-- 651
L S + NA L L ++ + + I PL+ +L++GS EA++ AA ++
Sbjct: 67 LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAV 126
Query: 652 SLSVIED---------------------NKIKIGRS------------------------ 666
S + D K +
Sbjct: 127 SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186
Query: 667 --GAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPA--A 721
G + LV LL +G + +AA+ L L + + ++++ AGAVK L+ L+
Sbjct: 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246
Query: 722 GMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLV--------EVVELGSARG-KENAAAA 771
+ +A L L + + + AI GIP L+ E ++ A+ +ENA A
Sbjct: 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGA 306
Query: 772 LLQLC 776
L +C
Sbjct: 307 LANIC 311
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613
+N+ + GA+ LV +L S + ++QE A AL NL+
Sbjct: 3 ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI---ANANAIEPLIHVLQTGSP-E 641
A+ LV+ML++ Q A+ AL+ LS + +K+ NA+E L +L + S E
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333
Query: 642 ARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698
+E+AA LF+ + I + I PL+ LL + + ++ AL L +
Sbjct: 1334 LKEDAAELCRVLFTNTRIRSTPAA---ARCIEPLISLLVSESSTAQEAGVCALDRL-LDD 1389
Query: 699 ENKARIVQA-GAVKHLVDLM 717
E A +V A GAV LV L+
Sbjct: 1390 EQLAELVAAHGAVVPLVGLV 1409
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 567 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----NNKSAI 622
L LA+ + N++ +A GA++ L L E A + LL + + ++SA
Sbjct: 1172 LTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAF 1231
Query: 623 ANANAIEPLIHVLQTGSPEARENAAATL---FSLSVIEDNKIKIGRSGAIGPLVDLLGNG 679
A+ L+ VL+ GS AR +AA L FS I D+++ A+ PLV++L G
Sbjct: 1232 G---AVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELA---RQAVQPLVEMLNTG 1285
Query: 680 TPRGKKDAATALFNLSIYHENKARI---VQAGAVKHLVDLMDPAAGMVDKAVA-----VL 731
+ + A AL LS + +KA V+ A+++L ++ + + K A VL
Sbjct: 1286 SESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVL 1345
Query: 732 ANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791
I R I L+ ++ S+ +E AL +L + + +V GA
Sbjct: 1346 FTNTRI---RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGA 1401
Query: 792 VPPLVAL 798
V PLV L
Sbjct: 1402 VVPLVGL 1408
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 80/315 (25%), Positives = 127/315 (40%), Gaps = 49/315 (15%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHS-SETKI 601
V+ LVE L + S Q A L L+ N + IA+ A+ L +L S S ++
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334
Query: 602 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661
+E+A L N +S A A IEPLI +L + S A+E L L E
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAE 1394
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN-KARIVQAGAVKHLVDLMDPA 720
+ GA+ PLV L+ + A +AL L K +V+AG ++ ++D++ A
Sbjct: 1395 LVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEA 1454
Query: 721 AGMVDKAVA----VLANLATIPDGRVAI------------------GQENGIPVLVEVVE 758
+ A+A +L N ++I G+ A GQ + + LV ++E
Sbjct: 1455 PDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILE 1514
Query: 759 ----------------------LGS-ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795
L S ++ + AA LL F + + AV PL
Sbjct: 1515 KPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPL 1574
Query: 796 VALSQSGTPRAKEKA 810
V L+ G +++A
Sbjct: 1575 VRLAGIGILSLQQRA 1589
|
Length = 2102 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 574 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613
+ +N+ + + G + LV++L S + ++ + A AL NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 587 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENA 646
+ +LV L +++ V+ L LSI D NK+ + IE L+ + +
Sbjct: 288 VALLVKALDRDNSELLILVVSFLKKLSIFDENKNEMEENGIIEKLLKLFPCQHEDLLNIT 347
Query: 647 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 706
LF+LS + K+ G + LV LL N G A L++LS + K+
Sbjct: 348 LRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDNDNHHGI--ALCVLYHLSCDDKAKSMFAY 405
Query: 707 AGAVKHLVDLMDPAAGM-VDKA-VAVLANLA 735
+ L+ ++ G VD +A+ NLA
Sbjct: 406 TDCIPMLMKMVLEGTGERVDLELIALCINLA 436
|
This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 615 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
+ NK A+ A A+ PL+ +L + E +E AA L +L+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-05
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 236 IPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGL-FVCP 278
S F CP+S E+MTD PV++ G Y R ++K G F CP
Sbjct: 7 FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802
A+ Q G+P LV ++ + AA AL L ++ V++ G +P LV L +S
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 803 TPR 805
Sbjct: 62 DEE 64
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 657 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695
+NK + +GA+ PLV LL + +++AA AL NL+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 53/306 (17%)
Query: 539 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD------ 592
+G Q+ KL+ S+ + EA L L+ + + + IA+ G I L++
Sbjct: 230 AGAVKQLLKLLGQGNEVSV--RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPS 287
Query: 593 ---MLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 649
M +QENA+ AL N+ SA+ I L + + SP + A T
Sbjct: 288 KEFMQGEFAQALQENAMGALANIC---GGMSAL-----ILYLGELSE--SPRSPAPIADT 337
Query: 650 L----FSLSVIEDNKIKIGRSGAIGP------LVDLLGNGTPRGKKD----AATALFN-- 693
L ++L V + + A P LV LL + ++ A +L+
Sbjct: 338 LGALAYALMVFDS---SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394
Query: 694 -LSIYHENKARIVQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGR---VAIGQEN 748
LS + A A K LV L+ A A + ++ + L++L A+G
Sbjct: 395 YLSRKLNH------AEAKKVLVGLITMATADVQEELIRALSSLCC--GKGGLWEALGGRE 446
Query: 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 808
G+ +L+ ++ L S + +E A A L L + G +PPLV L ++G+ +AKE
Sbjct: 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506
Query: 809 KAQALL 814
+ +L
Sbjct: 507 DSATVL 512
|
Length = 2102 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 545 VRKLVEDLKSTSLDT-QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V + VE + D Q EA L +A V+ + GA+ + + +L S+E ++E
Sbjct: 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE 175
Query: 604 NAVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEAR--ENAAATLFSL------- 653
AV AL N++ + + + A+EPL+ +L + + NA TL +L
Sbjct: 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235
Query: 654 ---SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGA 709
S I S A+ L L+ + P DA A+ LS +E ++ G
Sbjct: 236 PDWSNI---------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286
Query: 710 VKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKEN 767
LV+ L +A + A+ + N+ T D + + G + ++ ++
Sbjct: 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346
Query: 768 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810
A + + ++ V+ +PPL+ L S + K++A
Sbjct: 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389
|
Length = 526 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 615 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
+D NK A+ +A + L+ +L++ E + AA L +LS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 580 VIANCGAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTG 638
+ + G LV++L KIQ A+ ++ N+ + +D+ I N A++ +L +
Sbjct: 280 AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP 339
Query: 639 SPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697
R+ A T+ +++ +I+ + + I PL+ LL + + KK+A A+ N +
Sbjct: 340 KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399
Query: 698 HENKARI----VQAGAVKHLVDLMD 718
N+ I V G +K L DL+D
Sbjct: 400 GLNRPDIIRYLVSQGFIKPLCDLLD 424
|
Length = 526 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 686
AIEPLI +L++ S ++ AA L L E + I A+ PLV L G G ++
Sbjct: 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQR 1588
Query: 687 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAA--GMVDKAVAVLANL 734
A AL ++S+ + AG + L ++ DP + + A +VL+N+
Sbjct: 1589 AVKALESISLSWPKA--VADAGGIFELSKVILQADPQPPHALWESAASVLSNI 1639
|
Length = 2102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 828 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.89 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.86 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.85 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.77 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.76 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.74 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.68 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.66 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.52 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.51 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.46 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.43 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.21 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.2 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 99.2 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 99.17 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.1 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.09 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.09 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.08 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.07 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.04 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.04 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.02 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.89 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.89 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.88 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.85 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.84 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.75 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.74 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.72 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.63 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.59 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.55 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.54 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.51 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.5 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.49 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.46 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.45 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.45 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.42 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.41 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.41 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.4 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.39 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.37 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.35 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.28 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.27 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.26 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.2 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.19 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.18 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.12 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.12 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.11 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.08 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.06 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.02 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.01 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.01 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.99 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.97 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.93 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.92 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.89 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.85 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.84 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.83 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.82 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.79 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.78 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.76 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.73 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.73 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.63 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.56 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.55 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.5 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.49 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.49 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.45 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.44 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.43 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.43 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.41 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.38 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.36 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.34 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.33 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.33 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.29 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.26 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.13 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.11 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.09 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.0 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.95 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.94 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.88 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.81 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.79 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.7 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.69 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.67 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.67 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 96.57 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.57 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.49 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.48 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.46 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.41 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.41 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.4 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.4 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.33 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.31 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 96.28 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 96.19 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.18 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.16 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.14 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.08 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.05 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.02 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.99 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.98 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 95.96 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.89 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.82 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.81 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.79 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 95.77 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 95.74 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.72 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.69 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.61 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.56 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.52 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 95.52 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.51 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.49 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.38 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.22 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.2 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.18 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 94.95 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 94.92 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.9 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 94.86 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 94.79 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.77 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.77 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.7 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.43 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.26 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.12 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.1 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 93.99 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.98 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 93.98 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 93.97 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.76 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 93.72 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 93.72 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.69 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.68 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 93.56 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.14 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 93.06 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 92.81 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.75 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.74 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.74 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 92.7 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 92.56 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 92.39 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.31 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 92.22 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.94 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 91.94 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 91.93 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 91.64 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.51 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 91.29 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.25 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 91.18 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 91.02 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 91.02 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 90.99 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.87 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.78 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 90.6 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 90.55 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.53 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.05 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 89.99 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 89.88 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 89.78 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 89.76 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 89.6 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 89.59 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 89.48 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 89.24 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.22 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.1 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 89.07 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.05 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 88.99 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 88.97 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 88.24 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 88.2 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 88.18 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 87.76 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 87.66 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 87.11 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 87.06 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 87.03 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 86.67 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 86.58 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 86.37 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 85.81 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 85.7 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 85.57 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 85.46 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 85.24 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 85.16 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 85.06 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 84.73 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.58 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 84.16 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.07 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 83.68 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 83.65 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 83.48 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 83.36 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 83.17 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 83.11 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 82.8 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 82.8 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 82.72 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 82.01 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 81.89 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 81.89 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 81.8 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 81.48 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 80.73 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 80.18 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=291.08 Aligned_cols=280 Identities=24% Similarity=0.286 Sum_probs=252.3
Q ss_pred hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 003339 541 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~ 617 (828)
....|..|++.|+++ +++.|..|+..|+.|++.+++||..|++ .|+||.|+.+|.+++..++++|+++|.||+.++.
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 467899999999977 7899999999999999999999999997 6999999999999999999999999999999999
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHH-hhCChHHHHHhhcCCC---HHHHHHHHHH
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIG-RSGAIGPLVDLLGNGT---PRGKKDAATA 690 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~-~~g~I~~Lv~LL~s~~---~~~~~~Al~a 690 (828)
++..|+..|+|++|+.+|++|+.+.+++|+++|++|+.+ +.++..|+ ..|++|.|+++|++++ ..++..|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 45565554 5799999999999974 2356677899
Q ss_pred HHHchhcchhHHH-HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccC-CHHHHH
Q 003339 691 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE 766 (828)
Q Consensus 691 L~nLs~~~~n~~~-iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke 766 (828)
|+||+.+.+++.+ +++.|+|+.|+.+| +.+..++..|+++|.+++.+ ++++..+++.|+||.|+++|+++ ++.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999998865 58999999999999 56788899999999998874 77999999999999999999875 569999
Q ss_pred HHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCC---------HHHHHHHHHHHHHhhcc
Q 003339 767 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 767 ~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~---------~r~r~kA~~lL~~L~~~ 820 (828)
+|+++|.+||.++.+++..+++.|+++.|+.++.... ...++.|.++|.++...
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998654 33589999999998763
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=274.64 Aligned_cols=279 Identities=23% Similarity=0.325 Sum_probs=247.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.++.|+++|++++...|..|++.|++++..+++++..++++|+||.|+.+|.+++.+++++|+++|.||+.++.+...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999988655444
Q ss_pred -HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-------------------------------------HH-
Q 003339 622 -IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK- 662 (828)
Q Consensus 622 -I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-------------------------------------~~- 662 (828)
+.+.|++++|+++|++++.+.+++|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 557899999999999999999999999999996422111 01
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--Cc
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IP 738 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~ 738 (828)
....|+++.|++||++++..+++.|+++|.|++. .++++..++..|+|++|+.+| ..+.++..+++++|.+|+. ..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 1124899999999999999999999999999998 556788899999999999999 5667889999999999996 44
Q ss_pred hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 739 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 739 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+++..+++.|+|+.|+++|.+.+..+++.|+.+|.+++...+ ....+..+|++++|+.++++|+++.|+.|.++|..|.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 556778999999999999999999999999999999999876 5677778999999999999999999999999888777
Q ss_pred ccc
Q 003339 819 NQR 821 (828)
Q Consensus 819 ~~~ 821 (828)
+..
T Consensus 764 ~~~ 766 (2102)
T PLN03200 764 KHF 766 (2102)
T ss_pred hCC
Confidence 654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=247.78 Aligned_cols=279 Identities=23% Similarity=0.289 Sum_probs=251.8
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.||+.|. ..++..|..|+|+|.++|.++.+.-..++++|++|.|+.+|.+++..+++.|+++|+|++.+ +..|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 378999999997 55699999999999999999999999999999999999999999999999999999999987 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh-
Q 003339 620 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~- 696 (828)
..+.+.|++++|+.++..... ....+++++|.||+........+.. ..++|.|..+|.+.+.++..+|+|||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999988764 7899999999999987655444444 3889999999999999999999999999997
Q ss_pred cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003339 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~ 773 (828)
.++..+.+++.|+++.|+++| +.+..++..|+.++.|++. +....+.+++.|+++.|..++. +.....+..|||+|.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 456667788999999999999 5667788899999999999 4455677899999999999998 567779999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|++.++.++.+.|+..|++|.|+.+++.+.-++|+.|++++.++...
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=223.69 Aligned_cols=278 Identities=24% Similarity=0.336 Sum_probs=258.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.+..|.++-++.+..+|..+...|.+++. +.+||..++.+|++|.|+.++.+.|..+|+.+++++.|++.+..+++.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4567788887778889999999999999987 678999999999999999999999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 622 IANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 622 I~~~g--~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
+++.+ .++.|+.+.+++++.++..|..+|.+|+.+.+++..|++.|.+|.+++||++.........+.++.|++..+-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99987 9999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 700 NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
|...++++|.+.+|+++| ..+++++..|..+|+||+. .+.++..|.+.|+||.+.+++..+.-.+|+.-.+++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 999999999999999999 4567799999999999998 7788999999999999999999999999999888888888
Q ss_pred hCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 777 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 777 ~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
.++. .+..+.+.|+++.|+.+..+.+.+++..|+.+|-+|....
T Consensus 405 l~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 405 LNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred hccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 7664 5688889999999999999999999999999998887643
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=223.81 Aligned_cols=276 Identities=24% Similarity=0.367 Sum_probs=255.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+..|+..+-++..++|..++++|.+|+.- .+||..|+..|++.+|..+-++.+..+|.+|..+|.|+....+|+..++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 345677777777789999999999999986 5899999999999999998888999999999999999999999999999
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhC--ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.+|++|.|+.++++++..+++++..++.+++.+..+++.+++.+ .++.||+|+.+++++++..|..+|.||+.+.+.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999986 9999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L~~L~~~~ 779 (828)
..++++|.+|.++++| ++....+-..++.+.|++.++-+...|++.|++..||.+|+-+ ++++|-+|+.+||+|+..+
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 9999999999999999 5667778888899999999999999999999999999999875 5669999999999999988
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+..+.+.|++++|..|+..+.-.++.....++..|.-.
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 88899999999999999999999888888888877776543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=214.80 Aligned_cols=280 Identities=22% Similarity=0.238 Sum_probs=243.8
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.+++++. ....-.|.+|+|.|.+++.........++++|++|.++++|.+.+.+++++++|+|.|++.+ +..|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 467999999995 44455688999999999998877777888999999999999999999999999999999987 4578
Q ss_pred HHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 620 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~--~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
..+.+.|++.+++.+|.+.. .....++.++|.||+........-.. ..++|.|.+|+.+.++++..+|+|||..|+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 89999999999999998764 47889999999999974322111111 2568999999999999999999999999999
Q ss_pred cc-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003339 697 YH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
.+ +....+++.|+.+.|+++| +++..+...|+..+.|+.... ...+.+++.|+++.+-.+|.+.-+.++..|||++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 54 5567788999999999999 677778899999999999944 45677889999999999999988899999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
|+..++.++.+.+++.+.+|+|+.++..-.-++|+.|.|++.+.....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999998876543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=219.42 Aligned_cols=280 Identities=23% Similarity=0.283 Sum_probs=246.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~-~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.|+.|+.++.+++.+++.+|+++|.+++.+++..|..+.+.|+++.|+.++...+. .+..+++|+|.||+.+.+...
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3678999999999999999999999999999999999999999999999999988766 688999999999998754322
Q ss_pred H-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 621 A-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
. -.-..+++.|..+|.+.+.++...|+++|.+|+..... -..+.+.|+++.|+++|.+.+..++..|++++.|+....
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 2 22346899999999999999999999999999965444 455667799999999999999999999999999999866
Q ss_pred hhH-HHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 699 ENK-ARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 699 ~n~-~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
+.. ..++..|+++.|..+|. +...++.+|+|++.|++. +.+..++++++|.+|.|+.+|.++.-+.|..|+|++.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 555 56788999999999993 445588999999999998 66788999999999999999999999999999999999
Q ss_pred HhhCC-HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 775 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 775 L~~~~-~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
++..+ ++....+++.|++++|+.+|...+.++-..+...|.++....
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99875 567778889999999999998888888888888888876643
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=173.06 Aligned_cols=72 Identities=47% Similarity=0.882 Sum_probs=63.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
||++|+||||+++|+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999977899999999999999999999999999999985
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=194.38 Aligned_cols=278 Identities=22% Similarity=0.251 Sum_probs=242.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCcc-
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNN- 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~- 618 (828)
.+.||.++++|.+.+.+++.+++|+|.+++.+++..|..+.+.|++..|+.+|.+. +..+..++.|.|.||+...+.
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 36799999999999999999999999999999999999999999999999999875 457889999999999865321
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
-..-.-..++|.|.+++.+.++++...|++++.+|+..+..+ ..+.+.|..+.|+++|.+.+..++.-|++.+.|+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 111112346899999999999999999999999999866554 4455679999999999999999999999999999886
Q ss_pred chhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 698 HENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.+.+ ..++..|+++.+..+| ++...++.+|||.+.|+.. +.+..+++++.+.+|.|+.+|....-+.+..|||++.|
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 5677899999999999 5667899999999999988 77888999999999999999999999999999999999
Q ss_pred HhhCC---HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 775 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~---~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...++ ++....++..|.+.+|+.+|...+.++-+.|...++++-+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 98865 5677788899999999999999998899999888887644
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-17 Score=189.68 Aligned_cols=276 Identities=19% Similarity=0.253 Sum_probs=226.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
++.|+.|++.|.+++.+....++..|.+|+.. .+|+..|++.|+|+.|+.++.+++.+++..++.+|.|||.++..|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67899999999999999999999999999994 57999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchh
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n 700 (828)
+++.|++|.|+.+|.++ ..+..++.+|.+||.++++|..+...++++.|+++|-++ ..++...++.++.||+.++.|
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999865 456779999999999999999999999999999987654 666777888888899999888
Q ss_pred HHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHH-------
Q 003339 701 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANL------- 734 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~--------------------------------------~~~~v~~~Al~~LanL------- 734 (828)
...+.+.|+++.|++.. . .+.+..-+++++|+||
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 88888877776665432 0 1223344566777776
Q ss_pred -------------------------------------hCCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 003339 735 -------------------------------------ATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 775 (828)
Q Consensus 735 -------------------------------------a~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L 775 (828)
|..++....+.+.|.++.|+++++. .+++..-+.+.+++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 3344444455566777777777754 3566777888888888
Q ss_pred hhCCHHhHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 776 CTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 776 ~~~~~~~~~~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..+.. .+..++ +.+++..|+.++++.++.+|+.|-.+|-.+....
T Consensus 606 l~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 606 LFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 88865 444444 5789999999999999999999999998887653
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=190.57 Aligned_cols=280 Identities=23% Similarity=0.252 Sum_probs=228.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNKS 620 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~---~~~k~ 620 (828)
.++..+.+|.+.++.+|..|+..|..+++.+.+.+..+.+.|+|+.||.+|.+.+.++|.+|+++|.||... +.||.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 578899999999999999999999999999999999999999999999999999999999999999999865 35899
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC--------------CHHHHH
Q 003339 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPRGKK 685 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~--------------~~~~~~ 685 (828)
.|.+.++|+.++++|+. ++.+++++.+++||||++.|..|..|+... +..|.+-+-.. ...+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999986 789999999999999999988888886643 45554443211 256788
Q ss_pred HHHHHHHHchh-cchhHHHHHH-hCcHHHHHHhc-------CCChHHHHHHHHHHHHHhCCch-----------------
Q 003339 686 DAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD----------------- 739 (828)
Q Consensus 686 ~Al~aL~nLs~-~~~n~~~iv~-~G~V~~Ll~LL-------~~~~~v~~~Al~~LanLa~~~e----------------- 739 (828)
++..+|.|++. ..+.+.+|.+ .|.|..|+..+ +.+...+++|+.+|.||+..-+
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999998 7788888887 89999999877 2556789999999999975221
Q ss_pred ----------------hHH---------------------HHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH-
Q 003339 740 ----------------GRV---------------------AIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS- 780 (828)
Q Consensus 740 ----------------~r~---------------------~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~- 780 (828)
-+. -+....+|..-..+| .+.++.+.|.++++|.||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 001 001111233323334 35788999999999999998753
Q ss_pred ---HhHHHH-HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccccc
Q 003339 781 ---RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 824 (828)
Q Consensus 781 ---~~~~~v-~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~~ 824 (828)
..+..+ .++.+.+.|++|++.+++++.+.+..+|++|+.....+
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 344455 78999999999999999999999999999998876543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=184.66 Aligned_cols=253 Identities=21% Similarity=0.249 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC
Q 003339 559 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 638 (828)
Q Consensus 559 ~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~ 638 (828)
..+-+...|.+|+. +..+...+.+.|+|+.|+.+|++++.++...+++.|.+||+..+||..|.+.|++++|++++.++
T Consensus 265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 44567788999998 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-
Q 003339 639 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 717 (828)
Q Consensus 639 ~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL- 717 (828)
+...+..++.+|+|||.+++.|..++..|++|.|+.+|.+++ .+..|+.+|+|||.+++++..+...++++.|++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 55679999999999999999999999999999987
Q ss_pred -CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHH
Q 003339 718 -DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 796 (828)
Q Consensus 718 -~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~ 796 (828)
.++..+...+++++.||+.++.+.+.|++.++++.|++......+ .-...++.|++.+++.....+. +.+..|+
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 355556667899999999999999999999999999988755333 2244689999999865444443 4788888
Q ss_pred HhhcCCC-HHHHHHHHHHHHHhhc
Q 003339 797 ALSQSGT-PRAKEKAQALLSYFRN 819 (828)
Q Consensus 797 ~LL~~g~-~r~r~kA~~lL~~L~~ 819 (828)
.++..+. +...-.+.++|.+|.-
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhccc
Confidence 8888764 5566666777777653
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-17 Score=136.02 Aligned_cols=63 Identities=52% Similarity=0.892 Sum_probs=60.3
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 57899999999999999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=180.87 Aligned_cols=263 Identities=25% Similarity=0.297 Sum_probs=227.1
Q ss_pred HHHH-HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHH
Q 003339 558 DTQR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIA 623 (828)
Q Consensus 558 ~~q~-~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~------------d~~v~e~A~~aL~nLs~~-~~~k~~I~ 623 (828)
+-|. .|+..|-.+++ +++.|..+.+.|++..+..||.-+ ...++..|.++|.||.+. ..||..++
T Consensus 312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3454 78888889999 679999999999999999987531 244889999999999876 56788877
Q ss_pred H-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHHchh-cc
Q 003339 624 N-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YH 698 (828)
Q Consensus 624 ~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~-~~ 698 (828)
. .|++..+|..|.+...++....+.+|.||++.. ..|..+-+.|-+..|+.. |+.......+..+.||+||+. ..
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 599999999999999999999999999999943 346677777999998877 566677889999999999998 56
Q ss_pred hhHHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003339 699 ENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 699 ~n~~~iv~-~G~V~~Ll~LL~-----~~~~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+||..|.. .|++..|+.+|. ....+++.|-+||.|++. +++.|+.+.+.+.+..|+..|++.+-.+.-|+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 89999997 899999999993 235688999999999654 77889999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 769 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 769 v~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
|++||||...+++.++.+++.|+++.|..|+.+.+.-+.+-++..|++|-+++
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888888888888887766
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=143.67 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=231.1
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCcc---
Q 003339 545 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN--- 618 (828)
Q Consensus 545 V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~--- 618 (828)
...++..|. ..+.++-...+..++.-+-.++.||..+.+.++.+.+...|... ..++...+.+++.-|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 445555554 45566677788888888888899999999999999999877654 346888899999988776543
Q ss_pred -------HHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCC----HHHHHH
Q 003339 619 -------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKKD 686 (828)
Q Consensus 619 -------k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~----~~~~~~ 686 (828)
...|+..|++..|++.|+-+ ++.+...+..+|..|+..++....|.+.|++..|+.++.+.+ ....+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 45677788999999999876 577888999999999999999999999999999999998743 345678
Q ss_pred HHHHHHHchhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc--C
Q 003339 687 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--G 760 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~ 760 (828)
++..|..|+.+++++..+++.|+.+.++.++ ..++-+++.++.++..||- .|+.-..+++.|+-...++-|+. .
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8889999999999999999999999999987 4678889999999999998 88888889999998888998875 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 761 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 761 s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+|.+||+.+.|+...+.+++..++.. |+..|+......++..+..|...||-|-.+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 56799999999999999998777777654 688899998888888888888899866443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=154.00 Aligned_cols=278 Identities=22% Similarity=0.261 Sum_probs=216.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~--nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+.|++||.+|.+.+.++|.+|+++|++|.+.+.. |+..|.+.++|+.|+.+|.. .|.++++....+|+||+.++..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 4678999999999999999999999999998766 99999999999999999987 79999999999999999887766
Q ss_pred HHHHHcCCHHHHHHhhcCC--------------CHHHHHHHHHHHHHhcc-CcchHHHHHhh-CChHHHHHhhcC-----
Q 003339 620 SAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN----- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~--------------~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~s----- 678 (828)
..|+.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+..+++
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 666543 344443322110 12345567777777665 45556666555 666665555541
Q ss_pred --------------------------------------------------------------------------------
Q 003339 679 -------------------------------------------------------------------------------- 678 (828)
Q Consensus 679 -------------------------------------------------------------------------------- 678 (828)
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence
Q ss_pred -----------------CCHHHHHHHHHHHHHchhcc-----hhHHHH-HHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003339 679 -----------------GTPRGKKDAATALFNLSIYH-----ENKARI-VQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 679 -----------------~~~~~~~~Al~aL~nLs~~~-----~n~~~i-v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
.+..+.++++.+|-||+... ..+..+ ..+.+.+.|++|| ..+..++..++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 12233446777777776621 223333 5577889999999 46788999999999999
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHccC------CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHH
Q 003339 735 ATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAK 807 (828)
Q Consensus 735 a~~~e~r~~i~~~g~I~~Lv~lL~s~------s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r 807 (828)
+.+..++..|. ..+++.|++.|... ++...-.++.+|+++...+..+...+++.+++++|+.|..+. +++.-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999999998 67899999999652 367888999999999999998999999999999999999886 46899
Q ss_pred HHHHHHHHHhhcccc
Q 003339 808 EKAQALLSYFRNQRH 822 (828)
Q Consensus 808 ~kA~~lL~~L~~~~~ 822 (828)
+.|..+|..|+.+.+
T Consensus 673 kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 673 KAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=137.54 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=170.5
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.++.|+..|+ +.++.+|..|+..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 357899999999 5689999999999999877 56899999999999999999999999999999999999999998988
Q ss_pred HHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 621 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
.|-. +++.+++...+. +...+..++.+|.+|+..+++...+.. .++.++.||.+|+..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 8753 588888765554 568889999999999998888777754 6999999999999999999999999999999
Q ss_pred hhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCC
Q 003339 699 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~ 737 (828)
.+...++.++++..++.+++ ...++...++.+..||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999994 4577889999999999763
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=129.01 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=222.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCH
Q 003339 552 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI 628 (828)
Q Consensus 552 L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs-~~~~~k~~I~~~g~l 628 (828)
-.+++..+-.+++..|..+....++ +.++.+...++.+|.. ++.++....+..+..-+ .++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4467777888999999999887665 4566788889998853 56666666666665554 467899999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhccCcch----------HHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003339 629 EPLIHVLQT-GSPEARENAAATLFSLSVIEDN----------KIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 629 ~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~----------k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
+.+...|.. |...+...+.+++..|..+++. ...|+..|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977754 4456777888999988877663 46677788999999999987 78899999999999999
Q ss_pred cchhHHHHHHhCcHHHHHHhcCC-C----hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc--cCCHHHHHHHH
Q 003339 697 YHENKARIVQAGAVKHLVDLMDP-A----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA 769 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL~~-~----~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~--s~s~~~ke~Av 769 (828)
.++.+..+.+.|++..|++++++ + ..+...++.+|..|+.+...+..|++.|+.+.++.++. +.+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999932 2 33667899999999999999999999999999999885 47899999999
Q ss_pred HHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhccc
Q 003339 770 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 770 ~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~ 821 (828)
.++.-||-..+++...+++.|+-...++-+... ..-+++.|.+++|++..+.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888877765 3568899999999987653
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-12 Score=133.64 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=170.6
Q ss_pred HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH
Q 003339 582 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 582 ~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
.+.+.++.|+.+|+. .|+.+++.|+.+|.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456778999999985 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003339 661 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 661 ~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
..|-. .++.+++.+.+. +..++..++++|.||+...+.+..+. +.++.++.+| ..+..+...++.+|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 477777765554 67899999999999999887766554 4799999998 56778889999999999999
Q ss_pred chhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhC
Q 003339 738 PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~ 778 (828)
+.....++..+++..++.++.. .+.....+++.+..|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999998999999999987 4778899999999999765
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=155.67 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCHHHHHH
Q 003339 557 LDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIEPLIH 633 (828)
Q Consensus 557 ~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~-~~k~~I~~~g~l~~Lv~ 633 (828)
-.+++.|.-.|.+|++.+..|+..+... |++..+|..|.+...+++...+.+|.||++. + +.|..+-+.|-+..|..
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3467889999999999999999988775 9999999999998889999999999999987 3 34666778899999887
Q ss_pred h-hcCCCHHHHHHHHHHHHHhccC-cchHHHHHhh-CChHHHHHhhcCC----CHHHHHHHHHHHHHchh----cchhHH
Q 003339 634 V-LQTGSPEARENAAATLFSLSVI-EDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKA 702 (828)
Q Consensus 634 l-L~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~-g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~----~~~n~~ 702 (828)
+ |...........+.+||||+.+ .+||..|... |++..||-+|... ...+.+.|-++|.|.+. ..+.++
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 5 4555566778889999999985 6899999886 9999999999754 56788899999999877 567778
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 703 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.+.+..++..|+..| +..-.++.++|++||||+. +++.++.+++.|+|+.|..++.+.+..+-+-++.+|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 888999999999999 5667789999999999987 88999999999999999999999999999999999999998875
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=133.27 Aligned_cols=278 Identities=16% Similarity=0.169 Sum_probs=223.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
..+..+.|...|.++++.+|..++..|.+++.++......+.+.+.++.++.+|.+++..+...|+.+|.+|+.++.+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 35678899999999999999999999999999887666777788999999999999999999999999999998888877
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.+...+.+..|..++...+..+|..+..++.+++.. ++.-..+...|+++.++..|++.+.-++.+|+.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 888888899999999998888999999999999864 5556666677999999999999899999999999999999999
Q ss_pred hHHHHHHhCcHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 700 NKARIVQAGAVKHLVDLM-D--PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~--~~~---~-v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+...+.+.|+++.|..++ + .++ . +.-..+...++++......-.-.-...+..|.+++.+.++..+..|..++
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 999999999999999998 2 222 1 22344466777777422211111123466677778889999999999999
Q ss_pred HHHhhCCHHhHHHH-HhC-C----CHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 773 LQLCTNSSRFCSMV-LQE-G----AVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~~~~~~~~~v-~~~-g----~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+|.... ....+ ... + ++........++...+|..+...|..+-.
T Consensus 315 g~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 315 GQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99997654 34444 333 2 35555556667778899999998888744
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=115.24 Aligned_cols=79 Identities=35% Similarity=0.497 Sum_probs=74.6
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 003339 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
.+.++|+.++|.|+++||+|||+.|+|.||+|..|.+++..-+..+|+||.+|+..+++||++|+..|..|.+.|+|..
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 5678999999999999999999999999999999999999866779999999999999999999999999999998853
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=119.41 Aligned_cols=275 Identities=16% Similarity=0.217 Sum_probs=205.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..|..||+.|...+.+........|..|+-- .+|+..+.+.|.|..|+.+....+++++...+..|.|||++...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 56889999999988888888899999999884 48999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchh
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n 700 (828)
++..|.+|.|..+|.+.. -...|+..|+.+|.+++.|..+....+|+.+.+.+-++ +.++-.+.+....|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 999999999999997654 34568889999999999999999999999999887665 455555555555688888877
Q ss_pred HHHHHHhCcHHHHHHh------------c---------------------------CCChHHHHHHHHHHHHHhCCc---
Q 003339 701 KARIVQAGAVKHLVDL------------M---------------------------DPAAGMVDKAVAVLANLATIP--- 738 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~L------------L---------------------------~~~~~v~~~Al~~LanLa~~~--- 738 (828)
.+.+++..++..|++. + +.++...-+|+++|+||.-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 7666665455444331 1 112233446888888874311
Q ss_pred -----------------------------------------hhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 003339 739 -----------------------------------------DGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 775 (828)
Q Consensus 739 -----------------------------------------e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L 775 (828)
.+...+..++.|+.|+++|+. .+++..-+-..+.+++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 111222345567777777764 3444445555555666
Q ss_pred hhCCHHhHHHHHhC-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 776 CTNSSRFCSMVLQE-GAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~-g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+. ..+..++++ ..-..|+.|+...+..+|+.+-.+|-.+..+
T Consensus 620 l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 6653 234445544 4556689999999999998888888777654
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=140.48 Aligned_cols=131 Identities=26% Similarity=0.343 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Q 003339 142 YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRM 218 (828)
Q Consensus 142 ~e~~~~~~~~~l~~~~~~~~~~~~~l~~i~~~l---~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (828)
...|.+.+. .|+|+|+.+.|......+ ++++...+ ++...|....+.....+...+.
T Consensus 803 ~~~F~~avA------~D~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee------------- 862 (943)
T KOG2042|consen 803 EPSFVEAVA------KDGRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEE------------- 862 (943)
T ss_pred chhHHHHHh------ccccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 556666554 689999999999666544 44433322 2233333322221111101111
Q ss_pred HHHHHHhhhhccCCCCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHH
Q 003339 219 HDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKA 297 (828)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~ 297 (828)
.-.++|++|..||+..+|+|||++| +|+|.||+.|++|+..+ .++|+||+||+.+++.||.+||.
T Consensus 863 -------------~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~ 928 (943)
T KOG2042|consen 863 -------------ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKA 928 (943)
T ss_pred -------------HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHH
Confidence 1124999999999999999999998 99999999999999976 78999999999999999999999
Q ss_pred HHHHHHHHc
Q 003339 298 LIANWCELN 306 (828)
Q Consensus 298 ~i~~~~~~~ 306 (828)
.|+.|..+.
T Consensus 929 kI~~~~~ek 937 (943)
T KOG2042|consen 929 KIRCWIKEK 937 (943)
T ss_pred HHHHHHHHh
Confidence 999997664
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=129.90 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHH---HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 003339 143 EQTSSLIKEAIRDQVDGVAPSSEILV---KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 219 (828)
Q Consensus 143 e~~~~~~~~~l~~~~~~~~~~~~~l~---~i~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (828)
-+|++.++ .|+++++.+.|+ +|.++..+.++..+ +|++.+-.-.|+.+..+..++.
T Consensus 788 s~FveaVA------~D~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeE-------------- 846 (929)
T COG5113 788 SKFVEAVA------SDKRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEE-------------- 846 (929)
T ss_pred HHHHHHHH------cccccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhh--------------
Confidence 45666554 688999999998 45566667777665 3344444433332222211111
Q ss_pred HHHHHhhhhccCCCCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003339 220 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 220 ~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
+..+||++|..|++..+|+|||++| +|.|.||+.|..|+-.+ .|+|+.|.||+.++.+||-.||+.
T Consensus 847 ------------D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrek 913 (929)
T COG5113 847 ------------DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREK 913 (929)
T ss_pred ------------hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHH
Confidence 2456999999999999999999987 79999999999999986 789999999999999999999999
Q ss_pred HHHHHHHc
Q 003339 299 IANWCELN 306 (828)
Q Consensus 299 i~~~~~~~ 306 (828)
|-.|....
T Consensus 914 In~f~k~k 921 (929)
T COG5113 914 INRFYKCK 921 (929)
T ss_pred HHHHHhcc
Confidence 99986543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=119.80 Aligned_cols=273 Identities=15% Similarity=0.127 Sum_probs=212.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHHcC
Q 003339 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN 626 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-k~~I~~~g 626 (828)
++..|.+.+.+.-..++..|..+.... .-... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 788888777776677788888776633 22222 457889999999999999999999999999877655 44455779
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-chhHHHHH
Q 003339 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIV 705 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv 705 (828)
.++.++..|..++.++...|+.+|..|+..+..-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999887777787888899999999988888888899999999874 55666667
Q ss_pred HhCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC--CH-H---HHHHHHHHHHHHhhC
Q 003339 706 QAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA-R---GKENAAAALLQLCTN 778 (828)
Q Consensus 706 ~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~-~---~ke~Av~~L~~L~~~ 778 (828)
+.|+++.++..|+ ++.-++..|+.+|..|+..+.|...+.+.|+++.|+.++... ++ - .--..+....+++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 7999999999884 444566789999999999999999999999999999999652 33 0 111222344555554
Q ss_pred CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccccc
Q 003339 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 824 (828)
Q Consensus 779 ~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~~ 824 (828)
.+..... .-...+..|..++.++++..+..|...+..+....+|+
T Consensus 280 ~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 280 SPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred ChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 3321111 11345667778888899999999999999887665553
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-11 Score=118.00 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.7
Q ss_pred CCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc---------------CCCCCCCCCCcCCCCCCCCcH
Q 003339 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pN~ 293 (828)
.++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456688999999999999999999999999999999852 234699999999999999985
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=100.05 Aligned_cols=116 Identities=30% Similarity=0.415 Sum_probs=106.0
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-
Q 003339 581 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED- 658 (828)
Q Consensus 581 i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e- 658 (828)
+.+.|+++.|+.+|.+.+..+++.++.+|.+++.+ +.....+.+.|+++.++.+|.+++..++..++++|.+|+....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56889999999999999999999999999999987 6788888889999999999999999999999999999998764
Q ss_pred hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 659 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 659 ~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
....+...|+++.|+.+|.+.+..+++.|+++|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45666777999999999999999999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-11 Score=89.77 Aligned_cols=39 Identities=31% Similarity=0.777 Sum_probs=31.5
Q ss_pred ccCccccccCCeecCCCcchhHHHHHHHHhcCC---CCCCCC
Q 003339 242 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~---~~cP~t 280 (828)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 359986
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=98.18 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=107.6
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 703 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.+++.|+++.|+++| +.+..++..++.+|++++.. ++.+..+.+.|+++.+++++.+.++.++..|+++|.+|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 56678999999999999996 7888899999999999999999999999999999999999988
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.....+.+.|+++.|..++..++.++++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888889999999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-09 Score=111.89 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=213.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----CC---HHHHHHHHHHHHHhhc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s----~d---~~v~e~A~~aL~nLs~ 614 (828)
.+.+..|.+...|++.++-.+..+.|.++++.+.++|..+.+.|+-..++..|+. ++ ++....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4566777777778888999999999999999999999999999997777766653 33 4566677888888876
Q ss_pred C-CccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-cch-HHHHHhhCChHHHHHhhcCC-CHHHHHHHH
Q 003339 615 N-DNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDN-KIKIGRSGAIGPLVDLLGNG-TPRGKKDAA 688 (828)
Q Consensus 615 ~-~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~-~e~-k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al 688 (828)
+ +.-+..+++.|.++.|...+.-+ +.+..+......+||.+. .++ +....+......++++|... .+.......
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 5 45688899999999999888654 456666666666666542 222 34444556677788888765 566777788
Q ss_pred HHHHHchhcchhHHHHHHhCcHHHHHHhcCC--C----h---HHHHHHHHHHHHHhCCchhHHHHHhCC-cHHHHHHHHc
Q 003339 689 TALFNLSIYHENKARIVQAGAVKHLVDLMDP--A----A---GMVDKAVAVLANLATIPDGRVAIGQEN-GIPVLVEVVE 758 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~--~----~---~v~~~Al~~LanLa~~~e~r~~i~~~g-~I~~Lv~lL~ 758 (828)
..|...+.++..+..+++.|.+..+++++.. . . .....++.....|....+.-+.+...+ ++..++..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 8899999999999999999999999998821 1 1 122345555555666666666666666 7899999999
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhc
Q 003339 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-----GTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~-----g~~r~r~kA~~lL~~L~~ 819 (828)
+.+......++-++.|+++.+. .|..+++.+.+..|+.++.. |+-+.+..+..+||+|--
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 9999999999999999999876 78888899999999998865 456788889999998853
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-08 Score=110.62 Aligned_cols=273 Identities=15% Similarity=0.110 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 545 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
...++..|..++..++..|+..|..|...+..+.......-.+..|...|.+. +...+..|+.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566688888888999999999988765443211111111334555566543 57788889999999999999999999
Q ss_pred HcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcc--
Q 003339 624 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~-- 698 (828)
+.++++.|+.+|+.. +...+.+++-++|-||..++........+.|+.|+++++.. ...+.+.++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999763 46899999999999999888777666679999999999876 6789999999999998832
Q ss_pred -----hhHHHHHHhCcHHHHHHhcC---CChHHHHHHH-------HHHHHHhCCc------------------------h
Q 003339 699 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIP------------------------D 739 (828)
Q Consensus 699 -----~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al-------~~LanLa~~~------------------------e 739 (828)
.....|+..|+.+.+-.|.. .++++.+..- ..+..+++.+ +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456777888776655542 3444443221 1122222221 2
Q ss_pred hHHHHHhCC--cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 740 GRVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 740 ~r~~i~~~g--~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
+...+-+.+ .+..|+++|. +.++.+..-||.=|..++++.|..+..+-+.|+=..++.|+.+.++++|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233444444 3789999995 5678888889999999999988888888889999999999999999999999998876
Q ss_pred h
Q 003339 817 F 817 (828)
Q Consensus 817 L 817 (828)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-10 Score=125.84 Aligned_cols=69 Identities=17% Similarity=0.419 Sum_probs=63.3
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
.+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|+.|.++|+.|..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 355789999999999999999999999999999999864 579999999998899999999999999965
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=108.86 Aligned_cols=257 Identities=22% Similarity=0.258 Sum_probs=194.3
Q ss_pred hHHHHHHHHhcCC---CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003339 543 TQVRKLVEDLKST---SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~---~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
..+..+.+.++.. .....+-|+..|.+||.. ...-..+.....|..||..|+.++..+..-.+..|..||+..+||
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK 338 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK 338 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch
Confidence 3445555555421 122334577888899883 345566777799999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
..+.+.|.+..|+++.....++.+...+..|+|||.+...+..++..|.+|.|+.+|.+.+. .-.|+..|+.|+.+.+
T Consensus 339 ~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 339 IVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 99999999999999999999999999999999999999999999999999999999987653 3357788999999999
Q ss_pred hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH------------Hcc------
Q 003339 700 NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------VEL------ 759 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l------------L~s------ 759 (828)
.+..+....+|+.+++.+ ..+.++--..++.--|||.+..+.+.+++..++..|++. ++.
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg 496 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEG 496 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccc
Confidence 999999999999999965 333333333444446677666555555554444444332 211
Q ss_pred --------------------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003339 760 --------------------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 760 --------------------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
.++.---.+.++|.+|.-.+-.....+...+.+|.+-..++.|
T Consensus 497 ~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 497 ATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence 1222333567777777766655666777788999998888876
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-08 Score=105.04 Aligned_cols=222 Identities=18% Similarity=0.108 Sum_probs=150.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~l-L~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..+..+.+.+++.++.++..|++.|..|..... . ...+++.|..+ +.++++.|+..|+.+|.++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 455666677777777778788877777744211 0 12356677766 55667788888888887774322111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
...++..+...+.+.+..+|..++.+|..+. ...+++.|+.+|++.+..++..|+.+|..+....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 1123555666677777788888888776542 3357888888888888888888888888873211
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..+++.|+.+| +.+..++..|+..|..+- ...+++.|++.+.++. .+..|+.+|..+..
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--- 250 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRK----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD--- 250 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccC----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence 24566777777 567777888888877643 2356888888887765 44556666666543
Q ss_pred HhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHH
Q 003339 781 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLS 815 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~lL~ 815 (828)
..+++.|..++. .++.+++.+|.+.|+
T Consensus 251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 146899999997 778999999998875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=102.40 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=168.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..|++.|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+++|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 357899999999999999999999987643 34678888999999999999999999998543221
Q ss_pred HHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 623 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
...+++.|..+ ++..+..++..|+.+|.++....... ...++..+...+.+.+..++..|+.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 22456777766 67788999999999999985422111 1134666778888889999999999997652
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
...+++.|+.+| +++..++..|+..|..+... ...+++.|+.++.+.++.++..|+..|..+-. +
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence 344788999999 67788999999999988432 12457889999999999999999999987432 2
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
.+++.|+..++++.. +..|...|..
T Consensus 223 ---------~av~~Li~~L~~~~~--~~~a~~ALg~ 247 (280)
T PRK09687 223 ---------RVLSVLIKELKKGTV--GDLIIEAAGE 247 (280)
T ss_pred ---------hHHHHHHHHHcCCch--HHHHHHHHHh
Confidence 467888888887763 3344444443
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-07 Score=105.08 Aligned_cols=257 Identities=18% Similarity=0.154 Sum_probs=198.5
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC-Cc
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~-~~ 617 (828)
..-+++|++.|+.. ++..|.+|+.+|. .|...+++.-..+--.-+||.|+.+|+++ +.+++..|+++|.+|+.- +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788999999965 8889999999998 45555555544444447899999999885 799999999999999754 77
Q ss_pred cHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 618 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
....+++.++||.|+.-|. -....+.+.++.+|..|+..+ -..|.+.|++...+.+|.--+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999997654 456889999999999998643 3567788999999999988889999999999999988
Q ss_pred c--chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccC----CHHHH
Q 003339 697 Y--HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK 765 (828)
Q Consensus 697 ~--~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~----s~~~k 765 (828)
. .+.-..+ ..++|.|..+| ..+...++.++-.+..++. .++--+.+...+.|....++|.-. +....
T Consensus 324 si~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3 3333323 34789999999 3555556666655555554 444557788889999999888532 33445
Q ss_pred HHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003339 766 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 766 e~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
-..+..|..+|++.+-....+.+.++...|..+++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5566777888888888888888999999999988754
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.4e-08 Score=106.52 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=168.2
Q ss_pred HHHHhhccChhhHHHHHhc---CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCC-ccHHHHHH------cCCHHHHHH
Q 003339 566 ELRLLAKHNMDNRMVIANC---GAINILVDMLHS--SETKIQENAVTALLNLSIND-NNKSAIAN------ANAIEPLIH 633 (828)
Q Consensus 566 ~L~~La~~s~~nr~~i~~~---GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~-~~k~~I~~------~g~l~~Lv~ 633 (828)
.|..+-+...+.|..+.+. +....++.+|+. .++++....+..+..+..++ .....+.. ...+.++++
T Consensus 33 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ 112 (312)
T PF03224_consen 33 LIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK 112 (312)
T ss_dssp HHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH
Confidence 3333333334444444443 346666676654 58889999999999986554 44444443 136888999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHHchhcchhHHHHHHhCc
Q 003339 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGA 709 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~ 709 (828)
++.+++..++..|+.+|..|......+..-...+.++.++++|.+. +...+..|+.+|.+|...++.|..+.+.|+
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 9999999999999999999987666555444466778888887763 445678999999999999999999999999
Q ss_pred HHHHHHhc------CCC--hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH
Q 003339 710 VKHLVDLM------DPA--AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 710 V~~Ll~LL------~~~--~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~ 780 (828)
++.|+.+| ... ..+.-+++-+++.|+.+++....+.+.+.|+.|+++++. ..+++..-++++|.||+....
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 99999998 222 345678999999999999999999998899999999975 678999999999999998876
Q ss_pred H-hHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 003339 781 R-FCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 814 (828)
Q Consensus 781 ~-~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL 814 (828)
+ ....++..|+++.|-.|.... ++...+--..+-
T Consensus 273 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 273 KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5 566677776666666665543 566665544443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=102.10 Aligned_cols=275 Identities=15% Similarity=0.123 Sum_probs=205.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CC-------HHHHHHHHHHHHHhhc
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTALLNLSI 614 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d-------~~v~e~A~~aL~nLs~ 614 (828)
..+..|++.+.+.-.+.....+.++..-+.+++..+..+++.|.+..++.++.. .+ -.....++....-|..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 345566666654322222333344444444477888999999999999999865 21 1122334444444455
Q ss_pred CCccHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-----CCHHHHHHHH
Q 003339 615 NDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKDAA 688 (828)
Q Consensus 615 ~~~~k~~I~~~g-~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-----~~~~~~~~Al 688 (828)
.++....+...+ .+.-++..+.+.+....-.++-+|.|++..|++...+++.+++..|+++|.. ++.+.+.+++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 566655565555 8889999999999999999999999999999999999999999999999853 4789999999
Q ss_pred HHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhC-CcHHHHHHHHccCCHH-H
Q 003339 689 TALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVELGSAR-G 764 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~-g~I~~Lv~lL~s~s~~-~ 764 (828)
.||.||.....|+.+++.+|+++.++..+ ...++++-.-++.|..+....+ ....+... ..+..|++.-++.+-. +
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 99999999999999999999999999988 4667888899999998877554 33344433 3588888888876544 6
Q ss_pred HHHHHHHHHHHhhCC--HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 765 KENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 765 ke~Av~~L~~L~~~~--~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.-..-..|..+..++ .+....+.+.|++..++.++...+-..+..|.-.|..+
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 667777888888874 34556677889999999999888777777666655544
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=103.68 Aligned_cols=219 Identities=19% Similarity=0.169 Sum_probs=163.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~------GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.|++.+ +.+.+.....+..+..+...++.....+.+. .....++.++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 5678888899999999988887666666552 367888899999999999999999999976544333
Q ss_pred HHHHcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh------cCC-CHHHHHHHHH
Q 003339 621 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL------GNG-TPRGKKDAAT 689 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s----~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL------~s~-~~~~~~~Al~ 689 (828)
.....+.++.++..|++ .+.+.+..++.+|.+|...+++|..+.+.++++.|+++| .+. +.+.+..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33235667888877765 334567899999999999999999999999999999999 222 5789999999
Q ss_pred HHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch--hHHHHHhCCcHHHHHHHHcc--CCHH
Q 003339 690 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR 763 (828)
Q Consensus 690 aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e--~r~~i~~~g~I~~Lv~lL~s--~s~~ 763 (828)
+++-|+.+++....+...+.|+.|++++ ...+.++.-++++|.||+.... ....|+..|+++.+-.+... .+++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999998 5678899999999999999666 77888887777776666644 4555
Q ss_pred HHH
Q 003339 764 GKE 766 (828)
Q Consensus 764 ~ke 766 (828)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-06 Score=98.84 Aligned_cols=258 Identities=18% Similarity=0.242 Sum_probs=199.5
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCc-
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~- 617 (828)
...|+.|+..+.+. -.+.++.|++.|..+++ ..|..++. -|++.|+..|.. .|+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999999855 57889999999999998 57777654 568888888876 489999999999999965542
Q ss_pred ------cH----------HHHH-HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHHhh-CChHHHHHhhc
Q 003339 618 ------NK----------SAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRS-GAIGPLVDLLG 677 (828)
Q Consensus 618 ------~k----------~~I~-~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~~~-g~I~~Lv~LL~ 677 (828)
.+ ..+. ..+.|..|+..+...+-.+|.++...|.+|-. ..+.+..+... -+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 1222 34789999999999999999999999999865 34566666665 88999999999
Q ss_pred CCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcCC-----ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcH
Q 003339 678 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI 750 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~~-----~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I 750 (828)
+....++..|+..|..|+.+..+.++++. .++...|+.+++. ..-+++.|+.+|-||.. +..++..+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998888888776 8899999999932 23578999999999998 55667777778889
Q ss_pred HHHHHHHcc---CCH----------HHHHHHHHHHHHHhhCC-----H-HhHHHHHhCCCHHHHHHhhcCCC
Q 003339 751 PVLVEVVEL---GSA----------RGKENAAAALLQLCTNS-----S-RFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 751 ~~Lv~lL~s---~s~----------~~ke~Av~~L~~L~~~~-----~-~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
|.|.++|.. ++. ..-..|.-++..+..-+ . .++..+.+.+++..|+.++.+..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 999988842 331 11223444455554422 1 23356677899999999988874
|
|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-09 Score=85.40 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=31.5
Q ss_pred CcccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCC
Q 003339 238 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTR 281 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~ 281 (828)
-.|.||||+..|+|||. ..|||+|||.+|.+|+..+ ...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 46899999999999999 5899999999999999543 34599965
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-09 Score=77.61 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=33.3
Q ss_pred ccCccccccCC-eecCCCcchhHHHHHHHHhcCCCCCCCC
Q 003339 242 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t 280 (828)
||||.+.+.|| |+++|||+||+.||++|++. +.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5789987
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-06 Score=105.54 Aligned_cols=224 Identities=22% Similarity=0.207 Sum_probs=144.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|++.|.+.++.+|..|+..|..+. ..++++.|+.+|.++++.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 46789999999999999999999998764 2357899999999999999999999997773211
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-----
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----- 697 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~----- 697 (828)
...+.|...|.+.++.++..|+.+|..+.. +....|+.+|.+.++.++..|+.+|..+-..
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~ 749 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAG 749 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHH
Confidence 122456666666677777777766665421 1123344455555555555555555443100
Q ss_pred ------chhHHHHH---------HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC
Q 003339 698 ------HENKARIV---------QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 698 ------~~n~~~iv---------~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
.+.+...+ ..+.++.|+.++ +++..++..|+..|..+... ...++.++..+.+.+
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d 820 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASA 820 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCC
Confidence 00000000 111245566666 45555666666666655321 112345667777777
Q ss_pred HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 762 ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 762 ~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
+.+|..|+.+|..+.. ...++.|..++.+.+..+|..|...|..+
T Consensus 821 ~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 821 WQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7777777777766532 23569999999999999999999999876
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-06 Score=103.57 Aligned_cols=228 Identities=21% Similarity=0.175 Sum_probs=152.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-----
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----- 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~----- 616 (828)
...++.|++.|++.++.++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 457889999999999999999998887774311 12245556666666666666666665442110
Q ss_pred ------cc--HHHH----HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHH
Q 003339 617 ------NN--KSAI----ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 684 (828)
Q Consensus 617 ------~~--k~~I----~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~ 684 (828)
+. +... ...+..+.|..+|.+++.++|..++.+|..+... ....++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 00 0000 0012223445555555555665555555554321 11346888888888889999
Q ss_pred HHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHH
Q 003339 685 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 685 ~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 763 (828)
..|+.+|.++.... .+++.|+..| +++..++..|+.+|..+. ....++.|+.+|.+.+..
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHH
Confidence 99999988873321 1234577777 667778888999998654 234579999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
+|..|+.+|..+- .++ ...+.|...+.+.++.+|+.|...|..
T Consensus 854 VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999998861 222 247778889999999999999998863
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-08 Score=75.16 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=23.4
Q ss_pred ccCccccccC----CeecCCCcchhHHHHHHHHhcC---CCCCC
Q 003339 242 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP 278 (828)
Q Consensus 242 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~---~~~cP 278 (828)
||||.+ |.+ |++++|||+||+.||++++..+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 33577
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-05 Score=91.43 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHH
Q 003339 544 QVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 544 ~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+..|...+++. +...+.-|+.+|..|.+. +..|..+.+.++++.|+.+|+.. +.+++.+++-++.-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 455666777643 456677788999999885 47898898999999999999763 56899999999999999987666
Q ss_pred HHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc-------chHHHHHhhCChHHHHHhhcCC---CHHHHHHHH-
Q 003339 621 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIE-------DNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAA- 688 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~~-------e~k~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al- 688 (828)
.....+.|+.|+.+++... ..+..-++++|.||.... .....++..|.++ ++..|... ++++..+--
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHH
Confidence 6667799999999998764 668889999999997632 1234455556555 55555432 333322111
Q ss_pred ------HHHHHchhc------------------------chhHHHHHHhC--cHHHHHHhcC--CChHHHHHHHHHHHHH
Q 003339 689 ------TALFNLSIY------------------------HENKARIVQAG--AVKHLVDLMD--PAAGMVDKAVAVLANL 734 (828)
Q Consensus 689 ------~aL~nLs~~------------------------~~n~~~iv~~G--~V~~Ll~LL~--~~~~v~~~Al~~LanL 734 (828)
.-+..|++. .+|..++-+.+ ++..|+++|+ .++.+..-||.=++.+
T Consensus 302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~ 381 (429)
T cd00256 302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY 381 (429)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence 122233321 34555565533 6788888883 4455566677778888
Q ss_pred hC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 735 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 735 a~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+. +|.||..+-+.|+=..++++|.+.+++++.+|..++..|..+
T Consensus 382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88 889999998999999999999999999999999999877543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.8e-08 Score=102.65 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=59.6
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
+-++|-||.+.|+-||++|||||||--||.+|+... ..||.|..+++...|.-|+.|-++|+.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHH
Confidence 457999999999999999999999999999999875 5699999999999999999999999877
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=82.05 Aligned_cols=123 Identities=21% Similarity=0.262 Sum_probs=109.6
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.+..|+...+ ..+.+.|.+.+..|.++++ ++.|...+.+.+++..++..|..++..+.+.++..|+|++.++.|+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 367888888887 5688899999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHh
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGR 665 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~ 665 (828)
.|.++++++.++..|.++.......|+.+|..|+.... .+..+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999999999999999999986443 3444433
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-08 Score=72.51 Aligned_cols=39 Identities=36% Similarity=0.941 Sum_probs=35.9
Q ss_pred ccCccccccCCe-ecCCCcchhHHHHHHHHh-cCCCCCCCC
Q 003339 242 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~-~~~~~cP~t 280 (828)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 555679987
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-06 Score=88.35 Aligned_cols=180 Identities=22% Similarity=0.193 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHh
Q 003339 638 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 716 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~L 716 (828)
.+.+-++.|..-|..+..+-++...+...|++..++.++.+.+..++..|+++|...+. ++..+..+++.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35778888888888888888889999999999999999999999999999999999988 56677889999999999999
Q ss_pred cC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCC
Q 003339 717 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791 (828)
Q Consensus 717 L~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~ 791 (828)
|. ....+..+|+.++..|.. ++.|...+...+|...|...+.+ .+.+.+..|+..+..|..........+-..+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 93 445667899999999998 77889999999999999999988 67889999999999999887766666666777
Q ss_pred HHHHHHhhcCCCHHHHHHHHH-HHHHh
Q 003339 792 VPPLVALSQSGTPRAKEKAQA-LLSYF 817 (828)
Q Consensus 792 v~~L~~LL~~g~~r~r~kA~~-lL~~L 817 (828)
...+..+..+....+++.|.. +|..+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 788888888888888877766 33333
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-08 Score=97.60 Aligned_cols=57 Identities=25% Similarity=0.566 Sum_probs=51.1
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCCCCCCcHH
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHTTLIPNYT 294 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pN~~ 294 (828)
..|-|-||++.-+|||++.|||-||=.||.+|+... ...||+|+..++.+.++|-|.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 479999999999999999999999999999999853 334999999999999999753
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.2e-06 Score=97.04 Aligned_cols=213 Identities=16% Similarity=0.170 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCcc
Q 003339 541 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
++.+|+.|+.+|+ ..+.+++..|+++|..|+..-|.....+++.++||.|+.-|.. +--++.|+++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 4678999999999 5589999999999999999888888889999999999986644 67889999999999998643
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
-..|..+|+|-..+..|.--+..++..|+++..|++.. ++... + ..++|.|..+|+..+.+..+.++.++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 36788999999999999877888999999999998762 22222 2 367899999999999999999999999887
Q ss_pred h----cchhHHHHHHhCcHHHHHHhcCCC-----hHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc
Q 003339 696 I----YHENKARIVQAGAVKHLVDLMDPA-----AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758 (828)
Q Consensus 696 ~----~~~n~~~iv~~G~V~~Ll~LL~~~-----~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~ 758 (828)
. .++--.++...|.|.....||.-. ..+-...+..|..+|+ ++.....+...++...|..+|.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 6 233336678899999999988322 2334456677777777 5888888888888888888874
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-05 Score=86.27 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=198.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH----HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHH
Q 003339 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN----ILVDMLHS-SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~----~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
...+.+|..++.-....+.+.|..++.-.... .+.+... .|-..+.+ .+.+....|+.+|--+...++.|.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 45677777777777777888888877643221 1111222 22333444 567777889999988888899999
Q ss_pred HHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhc
Q 003339 621 AIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~ 697 (828)
.++.++++..++..|.+ .+..++....-++|-|+.++.....+...+.|+.|.+++++. ...+.+.++.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998843 368899999999999999988888886669999999999987 578999999999999885
Q ss_pred c-------hhHHHHHHhCcHHHHHHhcC---CChHHHHHHHH-------HHHHHhCCch---------------------
Q 003339 698 H-------ENKARIVQAGAVKHLVDLMD---PAAGMVDKAVA-------VLANLATIPD--------------------- 739 (828)
Q Consensus 698 ~-------~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al~-------~LanLa~~~e--------------------- 739 (828)
. +....|+..++.+.+-.|.. +++++++..-. -...|++..+
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 5 44456677777666554442 34444433221 1222333222
Q ss_pred ---hHHHHHhCC--cHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHH
Q 003339 740 ---GRVAIGQEN--GIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813 (828)
Q Consensus 740 ---~r~~i~~~g--~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~l 813 (828)
+...+-+.+ .+..|+++|+. .+|..---||.=+....+..|+....+.+.||=+.+++|+.+.++++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 222333333 58899999986 458888889999999999999999999999999999999999999999999887
Q ss_pred HHHh
Q 003339 814 LSYF 817 (828)
Q Consensus 814 L~~L 817 (828)
+..|
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 7755
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-05 Score=79.50 Aligned_cols=270 Identities=17% Similarity=0.181 Sum_probs=189.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
....|++++.+.+|.++..|+..+..|+.. ..+..... .-.++.|..++...++ .+.|+++|.|++.++.-++.+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 456789999999999999999999999885 33443332 3678888898877655 678999999999988877777
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-------hCChHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TP-RGKKDAATALFN 693 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-------~g~I~~Lv~LL~s~-~~-~~~~~Al~aL~n 693 (828)
.+. .+..+++.+-++........+.+|.||+..++....+.. .|.+...+.....+ +. .-..+-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 766 778888888877666777788999999997765444322 34455555555544 22 334466678889
Q ss_pred chhcchhHHHHHHhCcHHH--HHHhcCCChHHH-HHHHHHHHHHhCCchhHHHHHhCC--cHHHHH--------------
Q 003339 694 LSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV-------------- 754 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~--Ll~LL~~~~~v~-~~Al~~LanLa~~~e~r~~i~~~g--~I~~Lv-------------- 754 (828)
|+.....|..+.+...++. |+.+-+.+..++ ...+++|.|.|........+++.+ .+|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999999988887664332 222224333444 346899999999777776666533 244433
Q ss_pred -------HHH-----ccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003339 755 -------EVV-----ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 755 -------~lL-----~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
+++ +..++.++..-+.+|..||.... .++.+...|+.+.|-++-... ++.+++++-.+..+|-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 222 12467788899999999998654 566776777776666664443 57788888888887766
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-07 Score=74.24 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.7
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+++.|+||++-+.++++.||||. ||..|+.+|+.. ..+||+||++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 477999999875
|
... |
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-07 Score=94.63 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=41.5
Q ss_pred CCCcccccCccccccCC--------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 236 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
..++..||||++.+.+| |+.+|||+||+.||.+|+.. ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 45678999999987764 56789999999999999986 468999998875
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=86.29 Aligned_cols=184 Identities=19% Similarity=0.186 Sum_probs=154.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHH
Q 003339 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVD 674 (828)
Q Consensus 596 s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~ 674 (828)
+.+.+-++.|+.-|..+..+-+|...+...|++.+++..|++++.++|+.|+++|...+. ++..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 346777788888888888888888999999999999999999999999999999999987 5778889999999999999
Q ss_pred hhcCC-CHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCc-hhHHHHHhCC
Q 003339 675 LLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIP-DGRVAIGQEN 748 (828)
Q Consensus 675 LL~s~-~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g 748 (828)
.|.+. +..++..|+.|+.+|-. +......+...++...|.+.+ + .+..++.+++..+..|.... ..+..+...+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99866 56788999999999988 556778889999999999999 3 45667889999999988733 3444445566
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 749 GIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
....++.+....+..+.+.|+.+++.+...-
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6777777888889999999999998877653
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-08 Score=78.30 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=33.5
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHH
Q 003339 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 299 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i 299 (828)
-++|++|.++|++||. ..|.|+||+.||.+.+.. .||+|+.|-...++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4789999999999997 589999999999886653 399999999999999999998876
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-07 Score=100.29 Aligned_cols=70 Identities=26% Similarity=0.569 Sum_probs=60.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 308 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~ 308 (828)
..+++.||||++.|++|++++|||+||+.||..++. +...||.|+. . ...+.||..+.++++.+...+..
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999999 5567999996 2 22788999999999999877644
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-07 Score=90.62 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=45.1
Q ss_pred cccccCccccccC--CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003339 239 DFCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 239 ~f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
-|.||||++-+.. ||.+.|||.||+.||+..++.+ .+||.|++.++++++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3999999988876 4557899999999999999987 56999999999887765
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-05 Score=92.20 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=170.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..+.+.|.++++.++..|++.|.++.. ++-.. -.++.+..+|.++++.|+..|+.++..+..... ..+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~ 149 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLV 149 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHH
Confidence 467788899999999999999999999873 22222 257888899999999999999999998853311 112
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHh-ccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nL-S~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|..++...++-.+...+.+|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 222 588899999888999999999999988 2111111 1 11244556666667778888888888888887744332
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..- ...++.+..++ +.+..++-.|+.++..+...+. .-..+++.|+.++.+.++.++..++..|..++...+
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 211 55666777766 3456667777777777776555 223457778888887788888888888888887652
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+ . .....+..+..+.+..+|.+|..+|..+..
T Consensus 300 ---~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 300 ---PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ---hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 222 1 222333334446667777777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-05 Score=89.91 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=157.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..++.+.+.+.++++.+|+.|+.++..+.+.+++. +... .++.|..+|.+.++.++..|+.++..+..++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence 456788889999999999999999999998876543 2333 69999999999999999999999988811111100
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
-.-...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 111233455555566777888888888888776543322210 3456777777777777777777777777665444
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCC
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.-..+++.|..+| +++..++-.++..|..++... ...+. .....+..+. +.+..++..++.+|..++...
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 4456667777777 455567777777777777643 22222 2222233444 567777777777777777532
Q ss_pred HHhHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q 003339 780 SRFCSMVLQEGAVPPLVALS-QSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL-~~g~~r~r~kA~~lL~~L 817 (828)
.... +++.|...+ ...+...++.+...+..+
T Consensus 336 --n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~l 367 (526)
T PF01602_consen 336 --NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDL 367 (526)
T ss_dssp --HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred --chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 2222 344455555 222444555544444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-07 Score=100.77 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=65.7
Q ss_pred ccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 003339 240 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTAS 318 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~~~~~~~~~ 318 (828)
|.|.|++++.++||+-+ +||.|||+-|++|+.+. .+||+|+++|+.++|+|-. -.....|+|+...+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~Ik-----------~~~~v~pk~~satS 68 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEIK-----------VPAQVRPKPPSATS 68 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeecc-----------ccccccCCCCCccc
Confidence 57999999999999975 99999999999999976 5799999999999998852 23446678877777
Q ss_pred CCCCCCcccccC
Q 003339 319 LNQPSPLFVHAD 330 (828)
Q Consensus 319 ~~~~~~~~~~~~ 330 (828)
+ |.++..+||
T Consensus 69 I--PalL~~lQd 78 (506)
T KOG0289|consen 69 I--PALLKTLQD 78 (506)
T ss_pred h--HHHHHHHHH
Confidence 6 889999998
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-07 Score=93.29 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
-++|-||.+.++-|++++||||||.-||.+|+... ..||+|+.+.....+.-+..++..++.|..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 47899999999999999999999999999999875 669999999998888889888988888743
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-06 Score=66.32 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=39.1
Q ss_pred cccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 241 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
.||||.+.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998667899998753
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-07 Score=68.69 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=33.7
Q ss_pred cccCcccccc---CCeecCCCcchhHHHHHHHHhcCCCCCCCCC
Q 003339 241 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281 (828)
Q Consensus 241 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 281 (828)
.||||++-|. .++.++|||.|++.||.+|++.. .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999984 45568999999999999999985 6899996
|
... |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-05 Score=81.71 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=185.0
Q ss_pred hhHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-Cc
Q 003339 542 ETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~--q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
.+.+..|++++.+++.+. +.+|.+.|-.+.. .+||..++..| ...++.+-+ .+.++.+...+.+|.++-.+ ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 567789999999988776 6788888877655 47999998876 344443332 34678888899999999877 44
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
....+++.|+++.++-..+..++.+..+++.+|.|++.+. +.+..|++..+-+-|..|-.+.+.-.+..||.+++-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 5667888999999999898888999999999999998753 56788888888888888887778889999999999999
Q ss_pred hcchhHHHHHHhCcH---HHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 696 IYHENKARIVQAGAV---KHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 696 ~~~~n~~~iv~~G~V---~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
.+.+.-..+-+.|.+ .+++..+++..-.++ + .....|+ ...-++.|+.+|.+.-.+.+--++.-+
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD-~-------hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFARD-A-------HDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhhh-h-------hhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 998877766666644 444444444321111 0 0000110 012377888888855444444443333
Q ss_pred HHHhh-CCHH-hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 773 LQLCT-NSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~-~~~~-~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..=+. ...+ ....+-+-|+|+.|.++..+.+.-..+-|.+.|+.+-.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 22221 1112 22344456999999999998887788888889988755
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=74.83 Aligned_cols=147 Identities=20% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHH
Q 003339 626 NAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI 704 (828)
Q Consensus 626 g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i 704 (828)
+.+..|+.-.. ..+.+.++...+-|.|.+.++.|-..+.+..++...++-|...+...+..++..|+|+|.++.|+..|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 45666665444 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
++++++|.++..+ ++...++..|+..|..|+... .-|..+....++..+.+.-.+.+...+.-|-..|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999888 566778888999999999843 4466676655555555554444444444444444
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-05 Score=86.02 Aligned_cols=273 Identities=13% Similarity=0.108 Sum_probs=175.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhh----H-HHHHhcC--cH--HHHHHHHcCCCHHHH--HHHHHHHHHhh-c
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDN----R-MVIANCG--AI--NILVDMLHSSETKIQ--ENAVTALLNLS-I 614 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n----r-~~i~~~G--aI--~~Lv~lL~s~d~~v~--e~A~~aL~nLs-~ 614 (828)
.+-++++.+....+..++.+|..+...+-.. . ..+.+.| -+ -..+.+.. +|.+. ..++..-+.++ .
T Consensus 236 ~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~--~P~~s~l~~~~~l~c~~a~~ 313 (678)
T KOG1293|consen 236 VVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN--DPGLSTLDHTNVLFCILARF 313 (678)
T ss_pred hhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec--CCceeehhhhhhhHHHHHHH
Confidence 4555566777777788888887776644110 0 1111222 00 00111111 22221 11222222222 1
Q ss_pred CCccHHHHHHcCCHHHHHHhhcCC------CHHHHHHHHHHHHHhccC-----cchHHHHHhhCChHHHHHhhcCCCHHH
Q 003339 615 NDNNKSAIANANAIEPLIHVLQTG------SPEARENAAATLFSLSVI-----EDNKIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 615 ~~~~k~~I~~~g~l~~Lv~lL~s~------~~e~~~~Aa~aL~nLS~~-----~e~k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
-..++....+...++.++++|..+ .++.+.-++.-...+... -.++..+.+......+..+....+...
T Consensus 314 ~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~ 393 (678)
T KOG1293|consen 314 ASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDF 393 (678)
T ss_pred HHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHH
Confidence 233444445556677777766532 333333333222222211 234555555555566666666667888
Q ss_pred HHHHHHHHHHchhcc-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccC
Q 003339 684 KKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG 760 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~ 760 (828)
..+|+.++.+++..- .-+..+-+..++.+|++++ +++..+...++++|.||.. ...-+..++..|||..+.+++.+.
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~ 473 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP 473 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC
Confidence 889999998887632 2222245577899999998 6777888889999999998 778899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCHHhHHHH-HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 761 SARGKENAAAALLQLCTNSSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 761 s~~~ke~Av~~L~~L~~~~~~~~~~v-~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
....+..+.|+|+++..+..+..+.. ...=....|..+..+.+..+++.+-.+||+|..+.
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999987544433 33345677888888999999999999999998753
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-06 Score=89.75 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=47.7
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
.+..+.|-||++-+.||--+||||.||=+||..|..+. .-||.||+++++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 34569999999999999999999999999999999875 4499999999887653
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-06 Score=62.21 Aligned_cols=39 Identities=41% Similarity=0.943 Sum_probs=36.0
Q ss_pred ccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCC
Q 003339 242 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t 280 (828)
||||++..++|++++|||.|+..|+..|+..+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999666779986
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00021 Score=86.99 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=160.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 621 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~ 621 (828)
.++.+-.+|++.++..+..|+..|..++.+..+. ..... ..++..+..|.++++.|+..|+.++..++.+ ...-..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 4677778889999999999999999998865433 22222 6888889999999999999999999999977 333333
Q ss_pred HHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHh--hCChH-HHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 622 IANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGR--SGAIG-PLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~-~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
-...-.++.|+..+.+. +..++.+|+.+|.|++..-. +..|.. .+.+. .|..|++++++.++..++++|...+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33445677888888765 68999999999999976432 233332 26666 344455677999999999999998886
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC--CchhHHHHHhC--CcHHHHHHH---HccCCHHHHHHH
Q 003339 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT--IPDGRVAIGQE--NGIPVLVEV---VELGSARGKENA 768 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~--~~e~r~~i~~~--g~I~~Lv~l---L~s~s~~~ke~A 768 (828)
.+.+-.-.-.-.+|.|.++|. .+.+.+.....++..++. ..-|++.+... ..+..+..+ ....++..++.-
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 666555555778899999882 223333333333333222 34456666542 245566555 333466677777
Q ss_pred HHHHHHHhhCC
Q 003339 769 AAALLQLCTNS 779 (828)
Q Consensus 769 v~~L~~L~~~~ 779 (828)
.....++|..-
T Consensus 586 ~~~warmc~il 596 (1075)
T KOG2171|consen 586 IAFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHHHh
Confidence 77778888753
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=84.10 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=123.1
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 696 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~- 696 (828)
+..+.+.-....+..+....+...+..|+-++.+++. .+..+.-+....++.+||++|..+...+...++++|+||..
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme 449 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME 449 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh
Confidence 3344333333333333333445555555555555543 22222223345789999999999999999999999999987
Q ss_pred cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH--HHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003339 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV--AIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~--~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
+.+-+.++++.|+|..|..++ +.+..++..++++|.++..+.+... +....=+...++.++.++++.++|.+...|.
T Consensus 450 fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 450 FSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788899999999999999998 6778889999999999999655433 3333334678888999999999999999999
Q ss_pred HHhhCCHHhHHHHHh
Q 003339 774 QLCTNSSRFCSMVLQ 788 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~ 788 (828)
||.++..+-.+.+++
T Consensus 530 Nl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLE 544 (678)
T ss_pred HhhcCcHHHHHHHHH
Confidence 999987655555443
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00031 Score=77.49 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=166.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 546 RKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 546 ~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..|...+++ .+.+...-|+++|..+.+.+ +.|..+..++++..|+..|.+ .+-++|.+.+-++.-|+.++.....+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 445555554 55566677889999999965 799999999999999998843 47889999999999999998877777
Q ss_pred HHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccCcc---hH----HHHHhhCChHHHHHhhcCC---CHHHHHHHH---
Q 003339 623 ANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAA--- 688 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~~e---~k----~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al--- 688 (828)
...+.|+.|..+++... ..+..-.++++.|+..... .+ ..++..+ ++.-++.|... ++++..+--
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 77799999999998765 5577788899999876442 22 3333344 45555555433 332222111
Q ss_pred ----HHHHHchhc------------------------chhHHHHHH--hCcHHHHHHhcC--CChHHHHHHHHHHHHHhC
Q 003339 689 ----TALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 689 ----~aL~nLs~~------------------------~~n~~~iv~--~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~ 736 (828)
.-...||+. .+|..++-+ ..++..|+++|+ .++.+..-|+.=+.....
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 112223332 234444544 348889999993 445555666666666666
Q ss_pred -CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 737 -IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 737 -~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|+|+..+.+.||=+.++++|.+.+++++.+|..++..|..+
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887654
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-06 Score=87.94 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=50.0
Q ss_pred CcccccCccc-cccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC----CCCcHHHHHHHHHH
Q 003339 238 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANW 302 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pN~~l~~~i~~~ 302 (828)
++..||+|.. ....|= +.+|||+||++||.+.|..+...||.|+.++.... ..++..+.+.|.--
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence 5678999996 345553 23799999999999999887778999999998876 55666666555543
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0016 Score=79.65 Aligned_cols=274 Identities=18% Similarity=0.209 Sum_probs=164.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDML----HSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL----~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
....+.+.+.+.+++..++..|++.+..++...+.+....... ..+|.++..+ ..+|.+....++.+|..|....
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 4566777778887766699999999998887664344433332 4566565554 4456666666666666665432
Q ss_pred c-c-HHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC----------------------------c-------
Q 003339 617 N-N-KSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI----------------------------E------- 657 (828)
Q Consensus 617 ~-~-k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~----------------------------~------- 657 (828)
. . +..+. ..|...+.+.++. +..+|..|+..|..++.+ +
T Consensus 238 pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 238 PKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 1 1 11111 1122222222222 233444444333333221 0
Q ss_pred -----c---hH----HHH---Hh-hC-------ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHH
Q 003339 658 -----D---NK----IKI---GR-SG-------AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714 (828)
Q Consensus 658 -----e---~k----~~I---~~-~g-------~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll 714 (828)
+ +. ..+ .- .| .++.+-.+|++.+..-+++|+.+|..++......-.-.=..+++.++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 0 00 000 00 11 24455566677788888888888877655222111111144666666
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCC
Q 003339 715 DLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEG 790 (828)
Q Consensus 715 ~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g 790 (828)
..| ++.+.++-.|+.++..++. ....-+.-...-.++.|+..+.+ .+++++.+|+.+|.|+....+. ...-.+ .+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 667 7889999999999999998 33444444555678889998876 7889999999999998876542 111111 34
Q ss_pred CHH-HHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 791 AVP-PLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 791 ~v~-~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.+. .|..|.+++++.+++.|+..|.-..
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 555 6777888899999999988876543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=84.80 Aligned_cols=192 Identities=19% Similarity=0.180 Sum_probs=143.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc----hHHHHHhhCChHHHHHhhcCC-------CHHHHHHHHHHHHHch
Q 003339 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLS 695 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~s~-------~~~~~~~Al~aL~nLs 695 (828)
.+...+.+|+..+++-|-.++..+..+...++ .+..|.+.=+.+.|-+||+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46678889999888888888888888876544 244577774579999999883 3567788999999999
Q ss_pred hcchhHHHHHHhCcHHHHHHhc-CCCh-HHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003339 696 IYHENKARIVQAGAVKHLVDLM-DPAA-GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 696 ~~~~n~~~iv~~G~V~~Ll~LL-~~~~-~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
..++....---.+.||.|++++ ..+. .++..|+.+|..++.+++|++++++.|+++.|++.+.+ .+...+.|..+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9777655444467899999988 4444 89999999999999999999999999999999999987 7788999999999
Q ss_pred HHhhCCHHhHHHH---HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 774 QLCTNSSRFCSMV---LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 774 ~L~~~~~~~~~~v---~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+++...+...-.- .-..+++.|...........+-.+..+|..+-.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 9988654111000 001345555555555555555555555554433
|
|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.4e-06 Score=83.58 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCcccccCccccccC---------CeecCCCcchhHHHHHHHHhcC-----CCCCCCCCCcCC
Q 003339 236 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~ 285 (828)
...+..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4577889999998644 4677999999999999999753 245999999876
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=74.21 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=164.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh
Q 003339 588 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666 (828)
Q Consensus 588 ~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~ 666 (828)
.-|+.+|.+.+|.++..|+..|.+++.. ..+..... ...++.+.++++.... .+.|+.+|.|++.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999999765 33443332 3567778888877655 678899999999999888888777
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH-------hCcHHHHHHhcCCCh---HHHHHHHHHHHHHhC
Q 003339 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT 736 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-------~G~V~~Ll~LL~~~~---~v~~~Al~~LanLa~ 736 (828)
.++.++.++-+.....-...+.+|.||+..++....+.. .|.+.....+.+.+. .-....+-+++||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888999998887667778888999999997776654432 355555555554322 234667889999999
Q ss_pred CchhHHHHHhCCc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC--CCHHHHH----------------
Q 003339 737 IPDGRVAIGQENG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE--GAVPPLV---------------- 796 (828)
Q Consensus 737 ~~e~r~~i~~~g~--I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~--g~v~~L~---------------- 796 (828)
.+.||..+.+... +..++.+-..++.--+...+++|.|.|....-+-. ++.+ ++++.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 9999999988664 34444444445666777889999999987653322 2222 1222221
Q ss_pred -----Hhhc-----CCCHHHHHHHHHHHHHhhccccccC
Q 003339 797 -----ALSQ-----SGTPRAKEKAQALLSYFRNQRHGNA 825 (828)
Q Consensus 797 -----~LL~-----~g~~r~r~kA~~lL~~L~~~~~~~~ 825 (828)
+++- ..++.+|.+-.+.|-+|...+.||+
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 2222 1246789999998888888887774
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00023 Score=81.82 Aligned_cols=273 Identities=17% Similarity=0.137 Sum_probs=187.1
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003339 538 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 538 l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~----~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+..+.+.++.|.++|.+.+...+.-|..+|..++.++.+.-..=+. .-.||.++.+.++.+++++.+|+.++...-
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 3445778999999999998888999999999999876543222111 146899999999999999999999985553
Q ss_pred cCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 614 INDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 614 ~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.. .++..+..- ..+..+..+-...++++|.+.+.+|..|-...-.|..---.++++.++...++.+..+-..|+....
T Consensus 203 ~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 203 II-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred ec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 32 334444332 5677777777788999999999999988654333322222378888888889999999999999999
Q ss_pred HchhcchhHHHHHH--hCcHHHHHHhc---CCCh----------------------------------------------
Q 003339 693 NLSIYHENKARIVQ--AGAVKHLVDLM---DPAA---------------------------------------------- 721 (828)
Q Consensus 693 nLs~~~~n~~~iv~--~G~V~~Ll~LL---~~~~---------------------------------------------- 721 (828)
.++..+..+..+.. ...||.|+.=+ +.+.
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99998855444433 56777776633 1110
Q ss_pred --------HHHH---HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--
Q 003339 722 --------GMVD---KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-- 788 (828)
Q Consensus 722 --------~v~~---~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-- 788 (828)
.++. .++.+|+|+-. ..+.. -.+|.|-+.|.+....+||.++.+|..++.+.- +-+..
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~-----~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~L 432 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFG-----DELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHL 432 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhH-----HHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccch
Confidence 0111 12223332211 11111 124555555566788999999999999997643 22222
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 789 EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 789 ~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+|.|+.++.+..+-+|....|.|..+..+
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 13688899999999999998888888876654
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0014 Score=79.51 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=170.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.......++.+.+.+.++++-.--.|..+++.+++.-. -+|..|.+=+.+.++.++-.|+++|.++-.. .
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~ 136 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----S 136 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----H
Confidence 44667778888888888888777777778776554321 2477788888889999999999999877431 1
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
+++ -.+.++.+.|.+.++.+|..|+-++..+-..+. ..+...+.++.|.++|.+.++.++.+|+.+|..+.......
T Consensus 137 i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 137 VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 111 245667788889999999999999999854222 33445588999999999999999999999999997644332
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS- 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~- 779 (828)
. -...+.+..|+..| +-++-.+-..+.+|... .+...... ...+..+...|.+.++.+.-.|+.+++++....
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 2 23345556666666 32322233444444331 22222211 235777788888899999999999999988653
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.....+. .....+|+.|+ ++.+.++-.+..-|..+.
T Consensus 289 ~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 289 QELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 22222221 12235566663 455677777766555443
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.8e-06 Score=90.71 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=55.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANW 302 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~ 302 (828)
+-.+|.||||+++.+--.++ .|+|-||+.||-+.+..++..||.||+.+.. ..|.++...-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 34678999999999999887 5999999999999999999999999999755 5777666556666543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0031 Score=76.67 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=159.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..+..+.+.+.+.++.+++.|+-++.++...+++ .+.+.|.++.|..+|.+.|+.|+.+|+.+|..+....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 44566777888899999999999999999776553 3456689999999999999999999999999986443222 2
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch-h
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-N 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~-n 700 (828)
-...+.+..|+..|..-++=.+...+.+|..... ..... ....+..+...|++.++.+...|+.++.++....+ .
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 2234556677777766666566666666654322 11111 12567788888889999999999999999876421 1
Q ss_pred HHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-Cchh-----HHH--------------------HHhCC----cH
Q 003339 701 KARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDG-----RVA--------------------IGQEN----GI 750 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e~-----r~~--------------------i~~~g----~I 750 (828)
....+-..+...|+.|+..+.+++--++..+..|+. .+.- +.. +++.. .+
T Consensus 291 ~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL 370 (746)
T PTZ00429 291 LIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEIL 370 (746)
T ss_pred HHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHH
Confidence 111111122344555554444444444444433322 1100 000 00111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 751 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
..|.+.+...+...+..++.++..++...+... ..++..|+.++..+..-+.+ +...++.+
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~~~v~e-~i~vik~I 431 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRRPELLPQ-VVTAAKDI 431 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCchhHHH-HHHHHHHH
Confidence 344444455666777777777777776544322 34577788888765544433 44445544
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.4e-06 Score=90.96 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=57.6
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC----CCCCCCCCCcCCCCCCCCcH----HHHHHHHHHHHHcC
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNY----TVKALIANWCELNN 307 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~~~l~pN~----~l~~~i~~~~~~~~ 307 (828)
.+.+..||||++-..=|+.+.|||.||=.||.+||..+ ...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 44589999999999999999999999999999999854 45699999999998877753 23444555555565
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=74.62 Aligned_cols=220 Identities=16% Similarity=0.048 Sum_probs=119.5
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 543 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..++.|+..|. ..+.++...++..+. ...++ .++..|+..|.+.++.++..++.+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 45667777774 445555444433332 12111 13666777776666667777777665331
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.....+.|+.+|++.++.++..++.++... .....+.|..+|++.++.++..|+.+|..|-
T Consensus 115 --~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------ 175 (410)
T ss_pred --chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence 224455666666666666666555544431 1133456666666666666666666666542
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHH----hC------------------CcHHHHHHHHc
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG----QE------------------NGIPVLVEVVE 758 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~----~~------------------g~I~~Lv~lL~ 758 (828)
....++.|...+ +.+..++..|+..|..+.. ++....+. .. ..++.|..+++
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~ 250 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQ 250 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhc
Confidence 223344444444 4555555555555544432 11111111 01 23445555554
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.. .++..++.+|..+.. ...++.|+..+... ..++.|.+.++.+..-
T Consensus 251 d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 251 AA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred Ch--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 42 266666666554432 35788888877654 3889999998888653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=81.84 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=59.0
Q ss_pred ccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCc-CCCCCCCCcHHHHHHHHHHHHHc
Q 003339 240 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.||+|+.|.+.|+-+ +|||+||..||+..+......||.|... +-.+.|.|++..+..|+.+.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 6899999999999998777889999643 55678999999999999987743
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=60.64 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=34.9
Q ss_pred cccCccccc---cCCeecCCCcchhHHHHHHHHhcCCCCCCCCCC
Q 003339 241 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 282 (828)
Q Consensus 241 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 282 (828)
.||||.+.+ .-|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999998 457789999999999999998 44467999985
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=77.70 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=163.1
Q ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc----
Q 003339 586 AINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED---- 658 (828)
Q Consensus 586 aI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e---- 658 (828)
-|+.|+.-+.+ .-.+-+..|+..|..++. ..|..+ -+-|+++|+++|... ++++..+++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 45666665544 345567888888887763 233333 345799999999875 68999999999999987653
Q ss_pred ---hH----------HHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc--hhHHHHH-HhCcHHHHHHhc-CCC
Q 003339 659 ---NK----------IKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIV-QAGAVKHLVDLM-DPA 720 (828)
Q Consensus 659 ---~k----------~~I~-~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~--~n~~~iv-~~G~V~~Ll~LL-~~~ 720 (828)
.+ ..+. ..+.|..|+..+...+-.++..|+..|.+|..+. +.+..++ -.-+|..|+.+| +..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 12 2222 3488999999999999999999999999997744 4444444 477999999999 556
Q ss_pred hHHHHHHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHcc-C---CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHH
Q 003339 721 AGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVEL-G---SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795 (828)
Q Consensus 721 ~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~s-~---s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L 795 (828)
..++..++-.|..|.......+.++. +++...|..+++. | ..-+.+.|...|.||-.++...+..+.+.+.+|.|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 77888899999999986555555544 6789999999975 2 23588999999999999998888999999999999
Q ss_pred HHhhcC
Q 003339 796 VALSQS 801 (828)
Q Consensus 796 ~~LL~~ 801 (828)
.+++..
T Consensus 260 ~klL~~ 265 (970)
T KOG0946|consen 260 LKLLSV 265 (970)
T ss_pred HhhcCc
Confidence 987753
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00059 Score=80.46 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=49.7
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
-+.||.|..=++|-|++.|||.||-.||+..+.....+||.|+..|...++.|-
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 478999999999999999999999999999999888899999999998887663
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=76.29 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=158.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh---HHHHHhcCcHHHHHHHHcC-------CCHHHHHHHHHHHHHh
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHS-------SETKIQENAVTALLNL 612 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~GaI~~Lv~lL~s-------~d~~v~e~A~~aL~nL 612 (828)
..+...+++|+..+.+.+..++-.+.++.+.++.+ ++.+.++=+.+.|-++|.+ +....+.-|+++|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788899999888677778888888998876643 3457787667999999987 2355677899999999
Q ss_pred hcCCccHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003339 613 SINDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 613 s~~~~~k~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
+.+++....---.+-||.|+.++.+.+. ++...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....|+.+|
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 8876543222222569999999988776 99999999999999999999999999999999999988 566788899999
Q ss_pred HHchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh--HHHHHh----CCcHHHHHHHHcc-
Q 003339 692 FNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIGQ----ENGIPVLVEVVEL- 759 (828)
Q Consensus 692 ~nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~--r~~i~~----~g~I~~Lv~lL~s- 759 (828)
.+++........--. ..+++.|-..+ .......-.++..|..+-...+. ...... ......|..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 998774332110011 12334444444 22223344567777776654421 111111 2234555566665
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 003339 760 GSARGKENAAAALLQLCT 777 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~ 777 (828)
..+..|..|..+...|..
T Consensus 244 ~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 456666655555444443
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.5e-05 Score=82.32 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHH-HHhcCCCCCCCCCCcCCCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+|.|+||.+.|.+|+-++|||.||-.||.. |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5899999999999999999999999999999 87776667999998765543
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0073 Score=67.08 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=177.2
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHHcCCHHHH
Q 003339 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPL 631 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~------~~~----k~~I~~~g~l~~L 631 (828)
..+..+..+|. -|+---.+++.++|+.|+.+|.+++.++....+..|..|... .++ -..+++.+.++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 35666677776 566777888999999999999999999998888888888632 122 3345566888888
Q ss_pred HHhhcCCC------HHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHHchhcch-hH
Q 003339 632 IHVLQTGS------PEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHE-NK 701 (828)
Q Consensus 632 v~lL~s~~------~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~~~~-n~ 701 (828)
++-+..=+ .....++.+.+-|+... ++....+++.|.+..|+.-+... -...+.+|...|.-+..+.+ ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 88765432 23566778888888764 55677778888888877755432 45677888888887777554 77
Q ss_pred HHHHHhCcHHHHHHhc------CC----ChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003339 702 ARIVQAGAVKHLVDLM------DP----AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL------~~----~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
.......+|..|++-+ ++ +.++.++....|+.+...+++|+.+....|++...-+++. ....+..|..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 7788888999988865 21 3467788889999999999999999998887766555554 55677788999
Q ss_pred HHHHhhCCH--HhHHHHHhCCCHHHHHHhhc
Q 003339 772 LLQLCTNSS--RFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 772 L~~L~~~~~--~~~~~v~~~g~v~~L~~LL~ 800 (828)
|-....+.+ .+|..+++.+|+..+.-+..
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 988888765 68888888877777666554
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.5e-05 Score=55.72 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003339 574 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 574 s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+++++..+.+.|+||.|+.+|.+.+++++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00094 Score=75.80 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=163.7
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 003339 540 GIETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 540 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
-......-|..+|...+.+++..+-..|..+-. .++.. +--...++.|+.-+.++++.+|..|+.-|..+..-.
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 345677789999999999988655444433322 12221 112267899999999999999999988887775444
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHH---HHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 617 NNKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~---aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
...-...-+|.+..++.++.+... .+++.+.. .|..+...+..+..|--...|..|...+.++..+.+..|+..+.
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~ 361 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWII 361 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 444444556778888888766543 34444433 23344333333333333357888889999999999999999999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003339 693 NLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
.|-....++.........+.|+.-| +.+..++..++.+|+++|..+..... -.++..|+++......-....+..+
T Consensus 362 ~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lI 438 (675)
T KOG0212|consen 362 LLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLI 438 (675)
T ss_pred HHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHH
Confidence 9987777777667788889998888 67788999999999999997766511 1234455555566666788889999
Q ss_pred HHHHhhC
Q 003339 772 LLQLCTN 778 (828)
Q Consensus 772 L~~L~~~ 778 (828)
+..||.-
T Consensus 439 IRqlC~l 445 (675)
T KOG0212|consen 439 IRQLCLL 445 (675)
T ss_pred HHHHHHH
Confidence 9999974
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=73.22 Aligned_cols=179 Identities=21% Similarity=0.226 Sum_probs=138.6
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHH--HHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003339 620 SAIANANAIEPLIHVLQTGSPEA--RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~--~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
..|...|+++.|++++..++.+. +..++..|..+. ..+|+..++..| +..++.+-+.. .++..+..+..|.||-.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45556799999999999998654 888888887764 456778887776 66666666554 67889999999999988
Q ss_pred -cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 697 -YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 697 -~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
.++.+.+++++|++..++-.+ ..++.+...|.-+|+|++- ..+++..|++..+-..|.-+-.+.++-.+.+||-++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 457889999999999987776 5678899999999999887 446678888888888888888888999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCC---HHHHHHhhcC
Q 003339 773 LQLCTNSSRFCSMVLQEGA---VPPLVALSQS 801 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~---v~~L~~LL~~ 801 (828)
..|+.+.+ .-..+.+.|. +.+|+..+..
T Consensus 332 ~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 332 AVLATNKE-VEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred hhhhhhhh-hhHHHhhccchhhhhhhhhccCc
Confidence 99998653 3344444443 4444444443
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.017 Score=65.06 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=181.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~k 619 (828)
......+..++-+++.+++..+.+.+|.+.. +...-..+.+.+.--.++.-|..+ +..=+++|+..+..+.....+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 3455555555555668899999999999888 446667777777666777777654 3334568888877664332222
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.. ...|.+..|+.+..+.++..+..+..+|+.|+..+ -..+...|++..|++.+.++..+.....+.++..+...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 11 24478889999999999999999999999998642 2456677999999999998877788888889999988888
Q ss_pred hHHHHHHhCcHHHHHHhc-CC-------Ch--HHHHHHHHHHHHHhCCchhHHHHHhC--CcHHHHHHHHccCCHHHHHH
Q 003339 700 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN 767 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~-------~~--~v~~~Al~~LanLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~ 767 (828)
.|..+...--+..++.-+ +. +. .....+..++..+-.+=.|--.+... .++..|+..|..+++++++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 877665533344444433 21 22 22334444444443333343333322 35777777777777777776
Q ss_pred HHHHHHHHhhC------------------C--------------------------H----H----hHHHHHhCCCHHHH
Q 003339 768 AAAALLQLCTN------------------S--------------------------S----R----FCSMVLQEGAVPPL 795 (828)
Q Consensus 768 Av~~L~~L~~~------------------~--------------------------~----~----~~~~v~~~g~v~~L 795 (828)
...++..+-.- + . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 66666554420 0 0 0 11234578999999
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHh
Q 003339 796 VALSQSG-TPRAKEKAQALLSYF 817 (828)
Q Consensus 796 ~~LL~~g-~~r~r~kA~~lL~~L 817 (828)
+.+.... ++...+||.-+|.-+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 788999999988754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0041 Score=74.97 Aligned_cols=242 Identities=18% Similarity=0.165 Sum_probs=172.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCCccHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~n-Ls~~~~~k~~ 621 (828)
.++|.+++-|-+. --+..|+..|..+---.+=.-..-..-|.+|..+++|++.-.+++---+-+=.. |+.++..+..
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 3455555554221 234456655555544333233333445999999999999888877665555444 4788888888
Q ss_pred HHHcCCHHHHHHhhcC-C--CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003339 622 IANANAIEPLIHVLQT-G--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s-~--~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
+++.++-...+.+|.. + +++-|..||-+|..+..+ .-.+....+.+.|...+..|.++ .+-.+.+++.+|..|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8888888888888877 3 357788888888887653 34455566668888888888886 57899999999999977
Q ss_pred -cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-----chhHHHH------------HhCCcH---HHHH
Q 003339 697 -YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-----PDGRVAI------------GQENGI---PVLV 754 (828)
Q Consensus 697 -~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-----~e~r~~i------------~~~g~I---~~Lv 754 (828)
+.++++.-++.++...|+.+| ++-++++..|+-+|..+..+ ++....+ ++.... -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 678888889999999999999 57788999999999988773 3332222 121122 2566
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHH
Q 003339 755 EVVELGSARGKENAAAALLQLCTNSSRFCSMV 786 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v 786 (828)
.++..+++-++...+.+|..+..+...+...+
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 77788999999999999988888765444433
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0039 Score=72.13 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=172.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.-.+++++++.++.++.++..|+.++..+.-.. ....+..- .+++.|..+-..++++|+.+.+.+|.-|-.-...|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 567999999999999999999999998765532 33333332 566777777778899999999999877743221111
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCCC--H---------------
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGT--P--------------- 681 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~~--~--------------- 681 (828)
.---.+.+..+++.-+..+.++...|+.....++..+-.+..+... ..||.|+.=+.-.+ .
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 1111356777777778888889999999999998887666666554 66666665332111 0
Q ss_pred ---------------------------------------HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-----
Q 003339 682 ---------------------------------------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----- 717 (828)
Q Consensus 682 ---------------------------------------~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL----- 717 (828)
..++-.+.+|--|+ .+....+++.++.+|
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcC
Confidence 11222222222111 123344566666655
Q ss_pred CCChHHHHHHHHHHHHHhCCchhHH-HHHhC--CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHH
Q 003339 718 DPAAGMVDKAVAVLANLATIPDGRV-AIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVP 793 (828)
Q Consensus 718 ~~~~~v~~~Al~~LanLa~~~e~r~-~i~~~--g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~ 793 (828)
+++..+++.++-+|..+|. |+. -+... ..||.|+.+|.+..+-+|.-.||+|...+..-. +....... .++.
T Consensus 404 ~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~ 479 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLE 479 (885)
T ss_pred cchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHH
Confidence 3445566777777776663 433 23332 258999999999999999999999977654311 01111111 2456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 794 PLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.|+.-+..++.++++.|......|-+.
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 677777788999999999988877664
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.5e-05 Score=63.32 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.6
Q ss_pred CCCcccccCccccccCC-------------eecCCCcchhHHHHHHHHhcCCCCCCCCC
Q 003339 236 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR 281 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 281 (828)
++++- |+||++-|.|| +..+|||.|-..||.+|+..+ .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 44444 99999999555 235899999999999999876 5899996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=7.7e-05 Score=84.38 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCCcccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-cHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW 302 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~i~~~ 302 (828)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|++.+.....+| -..++..+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 6778999999999999999 599999999999999998 678999999988877776 34556666555
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=8.8e-05 Score=82.97 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC-----CCCCcHHHHHHHHHHHHH
Q 003339 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL 305 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-----~l~pN~~l~~~i~~~~~~ 305 (828)
.+..++.+|-|-||..++.+||++||||+||+.||.+-+... ..||.|+.++... ...+|+.+..+|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345679999999999999999999999999999999977743 5599999988752 334577788888888664
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00026 Score=53.30 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=38.4
Q ss_pred CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 737 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 737 ~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+++++..+++.|+++.|+++|.+.++.++++|+++|.|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=62.80 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=185.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH----HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM----VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~----~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~ 617 (828)
.+..+.|-.-|..++..++..++..+..+..+.+.|-. .++.+|..+.++..+..+|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 34566677777777888888899988888776554432 34567999999999999999999999999999999888
Q ss_pred cHHHHHHcCCHHHHH--HhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003339 618 NKSAIANANAIEPLI--HVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 693 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv--~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL~n 693 (828)
....|.++..++.+- .+--.-+.-+|......+..+.+ .++.....-..|.+..|..=|+- .+.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 888888887766543 23333344566666666666544 34444444456877777666654 567788888899999
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHH----HHHHHHhCCchhHHHHHhC--CcHHHHHHHHccCCHHH
Q 003339 694 LSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARG 764 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al----~~LanLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ 764 (828)
|+..+..+..+...|+|+.+..++ ++++--.-.++ ..+.+.+...-.-+++++. -+|....++++..++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 999888999999999999999988 33333233333 3333333322223344442 24666778888999999
Q ss_pred HHHHHHHHHHHhhCCHHhHHHHHhCCC--HHHHHHhhcCCCHHHH-HHHHHHHHHhh
Q 003339 765 KENAAAALLQLCTNSSRFCSMVLQEGA--VPPLVALSQSGTPRAK-EKAQALLSYFR 818 (828)
Q Consensus 765 ke~Av~~L~~L~~~~~~~~~~v~~~g~--v~~L~~LL~~g~~r~r-~kA~~lL~~L~ 818 (828)
++.|+.+|..|.++.. ..+.+++.|- ...|+.-.-+.+..++ +.|..+|..+.
T Consensus 321 ieaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 9999999999988764 3445555442 3334333333333332 33444554443
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=8.9e-05 Score=79.13 Aligned_cols=65 Identities=15% Similarity=0.340 Sum_probs=53.4
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC----CCCCcHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIAN 301 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~i~~ 301 (828)
+=....|++|..+|.|+-++ .|=|||||+||-+||.. ..+||.|+..+..+ .+.++.+|+.++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34677899999999999986 59999999999999998 47899999877655 45666777766654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=69.57 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=117.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---chHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003339 636 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 636 ~s~~~e~~~~Aa~aL~nLS~~~---e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
.+.+++.+..|+..|..+.... .....+... ..+..+...+.+....+.+.|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567889999999988886543 333333332 56677888888778889999999999998854444333456688
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH---HhHHH-
Q 003339 711 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS---RFCSM- 785 (828)
Q Consensus 711 ~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~---~~~~~- 785 (828)
+.|++.+ +....+.+.|..+|..++.+-..-..+ .++.+...+.+.++.+|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 8898888 566778888999999888854411111 15566677788999999999999999877655 11111
Q ss_pred HHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 786 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 786 v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..-..+++.|...+.+.++.+|+.|..++..|....
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111346888999999999999999999999886654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=67.69 Aligned_cols=257 Identities=15% Similarity=0.162 Sum_probs=167.4
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHH----------cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHH
Q 003339 564 TAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 632 (828)
Q Consensus 564 l~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL----------~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv 632 (828)
+..|+.|++ ++.+-..+....++..|+.+- ...+..+..+|+.+|+|+-.. +..|..+++.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456677766 445656666656666666654 335788999999999998765 56788888999999999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHhcc-CcchHHHHHhh-CChHHHHHhhcC-----------------CCHHHHHHHH
Q 003339 633 HVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDAA 688 (828)
Q Consensus 633 ~lL~s~-----~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~s-----------------~~~~~~~~Al 688 (828)
..|+.. +.+.......+||-++. ..+.+..+.+. +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 68888899999998876 45556566554 777777776631 1235677899
Q ss_pred HHHHHchhcchhHHHHHHhCcH----HHHHHh---c---CCChHHHHHHHHHHHHHhCC-chh-------HHHH----Hh
Q 003339 689 TALFNLSIYHENKARIVQAGAV----KHLVDL---M---DPAAGMVDKAVAVLANLATI-PDG-------RVAI----GQ 746 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V----~~Ll~L---L---~~~~~v~~~Al~~LanLa~~-~e~-------r~~i----~~ 746 (828)
.++||+..+......--..+.+ ..|..+ . .+.......++.+|.|+--. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998744332211223333 334444 1 12245567777777776211 011 0111 11
Q ss_pred CCcHHHHHHHHcc----CC----HHHHHHHHHHHHHHhhCCHHhHHHHHh----------------CCCHHHHHHhhcCC
Q 003339 747 ENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQSG 802 (828)
Q Consensus 747 ~g~I~~Lv~lL~s----~s----~~~ke~Av~~L~~L~~~~~~~~~~v~~----------------~g~v~~L~~LL~~g 802 (828)
...+..|+++|.. .. ...----+.+|..++......++.+.. ...-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2347777777743 11 133444566677777776544444432 23567799999999
Q ss_pred CHHHHHHHHHHHHHhhccc
Q 003339 803 TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 803 ~~r~r~kA~~lL~~L~~~~ 821 (828)
.+.+|..+.++|-.|.+..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 9999999999998887644
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=65.38 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=170.9
Q ss_pred hhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHH
Q 003339 570 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAA 647 (828)
Q Consensus 570 La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa 647 (828)
|-+..+.-+..+.-...++.+..++-+++.+++..+.+++..+..+...-..+.+.+.---++.-|... ...-|++|.
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence 334444445554444455666656656669999999999998888887777777777555566667654 466788999
Q ss_pred HHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHH
Q 003339 648 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK 726 (828)
Q Consensus 648 ~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~ 726 (828)
..+..+.........+ ..|.+..++.+..+.++..+..|+.+|+.|+..+. ..++..|++..|++.+ +....+.+.
T Consensus 90 kliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 8888776543322222 45889999999999999999999999999988433 3457899999999987 554557888
Q ss_pred HHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-------CCH--HHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHH
Q 003339 727 AVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-------GSA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV 796 (828)
Q Consensus 727 Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-------~s~--~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~ 796 (828)
.+.++..+..+|..|..+...--+..++.-+.+ .+. ..-..+..++..+-+..+.....-.. ..++..|+
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 899999999999999987653334444443321 122 23344555555555544332222222 25789999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhc
Q 003339 797 ALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 797 ~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+...++++|+....++--+-+
T Consensus 247 ~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 247 DSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHC
Confidence 99999999999999887765543
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=72.38 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=147.6
Q ss_pred HHHHHHhhcCC-ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHH
Q 003339 606 VTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 606 ~~aL~nLs~~~-~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
+..|..++.+- .-|.-+.+.....+|+++|..+..-+.--+...++|+.. ....+..+.+.|+|..|+.++.+.+...
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaL 489 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDAL 489 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhh
Confidence 33344444432 236667788899999999999877777778888898876 5566888888999999999999888999
Q ss_pred HHHHHHHHHHchhcch--hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC----chhHHHHHhCC----cHHH
Q 003339 684 KKDAATALFNLSIYHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI----PDGRVAIGQEN----GIPV 752 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~--n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~----~e~r~~i~~~g----~I~~ 752 (828)
+.+..|.|.+|..+.+ .+-+++..-++..++.+. ++.-.+.+.++.+|.|+.-+ ++.+..+...- ....
T Consensus 490 qans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~ 569 (743)
T COG5369 490 QANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKR 569 (743)
T ss_pred hhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHH
Confidence 9999999999988543 455678888889999998 78888999999999998762 22333332221 3567
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHHHhhc
Q 003339 753 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQ 800 (828)
Q Consensus 753 Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~~LL~ 800 (828)
|++.++..+|-..+..+.+|.+++..++.....+.+ +..+..+.+++.
T Consensus 570 l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 570 LIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 788888899988889999999999888766666654 445555555443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.02 Score=63.45 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=133.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..+..+++.+.+.+..++..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468889999998888889888888554432 347899999999999999999999887662
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHH------------HHHHHH
Q 003339 623 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT 689 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~------------~~~Al~ 689 (828)
....++.|+..|. +.+..++..++.+|..+- ...++..|+.++++..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2347889999998 588999999999998773 3456888999988865333 222222
Q ss_pred HHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003339 690 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 690 aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+|.. +...-.++.+..++ +....++..|...|..+.... ..+.+.+...+...+..++..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 22344677788877 555677888888888877754 2345666667777777777666
Q ss_pred HHHHHHHh
Q 003339 769 AAALLQLC 776 (828)
Q Consensus 769 v~~L~~L~ 776 (828)
+..|..+-
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 66665443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=67.87 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=113.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHH
Q 003339 550 EDLKSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIAN 624 (828)
Q Consensus 550 ~~L~s~~~~~q~~Al~~L~~La~~s--~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-k~~I~~ 624 (828)
+.-.+.+++.+..|+..|+.+...+ ......+.+. ..+..++..+.+....+...|+.++..|+..-.. -... -
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~ 92 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-A 92 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-H
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-H
Confidence 3345789999999999999998876 3333333332 5556777777766778889999999988754222 2222 3
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch-hHHH
Q 003339 625 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKAR 703 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~-n~~~ 703 (828)
...++.|++.+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 357899999999999999999999999887643311111 14666677788899999999999988866333 2222
Q ss_pred HHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 704 IVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 704 iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
+-. ..+++.+...+ |.+.++++.|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 222 44667777777 7889999999888888865
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0088 Score=63.94 Aligned_cols=226 Identities=14% Similarity=0.122 Sum_probs=161.2
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-HcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhh-CC
Q 003339 593 MLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-GA 668 (828)
Q Consensus 593 lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~-~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~ 668 (828)
+++.-++-++..|+.+|.++...++.|..+- +..+-..++.++++ |..+.+.+++-++|-|+........|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344456678889999999998887766654 44455678888876 45789999999999999988887666655 77
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhc-C---CChHHHHHH---HHHHHH-----
Q 003339 669 IGPLVDLLGNG-TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM-D---PAAGMVDKA---VAVLAN----- 733 (828)
Q Consensus 669 I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL-~---~~~~v~~~A---l~~Lan----- 733 (828)
|..|+.+.+.. ...+.+.++..+.|++. ..+....+.-.|-+.+-+++| + ++++++... -..|.+
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888876 57788899999999988 224445555566455555555 2 334433211 111111
Q ss_pred --------------HhCCc---------hhHHHHHhCC--cHHHHHHHHccCCHH-HHHHHHHHHHHHhhCCHHhHHHHH
Q 003339 734 --------------LATIP---------DGRVAIGQEN--GIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMVL 787 (828)
Q Consensus 734 --------------La~~~---------e~r~~i~~~g--~I~~Lv~lL~s~s~~-~ke~Av~~L~~L~~~~~~~~~~v~ 787 (828)
|+-.| .+...+.+.+ .+..|.++++...+. .-.-||.=+.++.+..|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 12222 1233444433 478888999876665 455678888888998998888999
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 788 QEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 788 ~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.|+-+.++.|+.++++++|-.|..++..+-
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999887653
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.099 Score=58.44 Aligned_cols=238 Identities=16% Similarity=0.155 Sum_probs=170.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----hhh----HHHHHhcCcHHHHHHHHcCC------CHHHHHHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDN----RMVIANCGAINILVDMLHSS------ETKIQENAV 606 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-----~~n----r~~i~~~GaI~~Lv~lL~s~------d~~v~e~A~ 606 (828)
-..|+.|+++|...|.++-...+..|..|+-.+ .+. -..+++.++++.|++-+..= ...-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357899999999999999999999999998643 221 22345668899998877542 233446677
Q ss_pred HHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhc----C
Q 003339 607 TALLNLSI-NDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG----N 678 (828)
Q Consensus 607 ~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~----s 678 (828)
..+-|+.. .+.....+++.|.+.-|+.-+... -..-+.+|..+|.-+-.+ ++++...+...++..+++-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888854 466677788888888877755433 355778888888887664 458888888888888877663 1
Q ss_pred C-----CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHHHhCCcH
Q 003339 679 G-----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAIGQENGI 750 (828)
Q Consensus 679 ~-----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~---r~~i~~~g~I 750 (828)
+ ..+...+-..+|+.+...+.|+.+++...+++...-++....-..--++.+|-.+...+++ +..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 1355667777888888899999999998888865555544444556789999998887775 4566777777
Q ss_pred HHHHHHHc-c--------C-CHHHHHHHHHHHHHHhhCC
Q 003339 751 PVLVEVVE-L--------G-SARGKENAAAALLQLCTNS 779 (828)
Q Consensus 751 ~~Lv~lL~-s--------~-s~~~ke~Av~~L~~L~~~~ 779 (828)
..+..+.. . . -...-++.+.+|+++-.+.
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 76665543 1 1 2456778889998887643
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.065 Score=62.03 Aligned_cols=239 Identities=19% Similarity=0.237 Sum_probs=160.9
Q ss_pred hhHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHH
Q 003339 542 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV 606 (828)
Q Consensus 542 ~~~V~~Lv~~L----------~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-----d~~v~e~A~ 606 (828)
+..+..|++.- ...++.+..+|+++|.++...++..|..+.+.|..+.++..|+.. +.++.....
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 45566676665 255788899999999999999999999999999999999999875 788888888
Q ss_pred HHHHHhhc-CCccHHHHH-HcCCHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhccCcchHHHHHhhC
Q 003339 607 TALLNLSI-NDNNKSAIA-NANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG 667 (828)
Q Consensus 607 ~aL~nLs~-~~~~k~~I~-~~g~l~~Lv~lL~s-----------------~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g 667 (828)
++|.-++. ....+..++ +.+++..|+..|.. ........++.++||+..+......--...
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 88877754 345555555 45788877776531 134467788999999976433222101123
Q ss_pred ChHHHHHhhc-------C--CCHHHHHHHHHHHHHchhcc-hh-------HH----HHHHhCcHHHHHHhcC------CC
Q 003339 668 AIGPLVDLLG-------N--GTPRGKKDAATALFNLSIYH-EN-------KA----RIVQAGAVKHLVDLMD------PA 720 (828)
Q Consensus 668 ~I~~Lv~LL~-------s--~~~~~~~~Al~aL~nLs~~~-~n-------~~----~iv~~G~V~~Ll~LL~------~~ 720 (828)
.++.|+.+|. . ........++.+|.|+=... .. .. ......++..|+.+|+ ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 3444444432 1 13567788888888882211 11 00 0122346777777772 11
Q ss_pred ---hHHHHHHHHHHHHHhCC-chhHHHHHh--------------CC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 721 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 721 ---~~v~~~Al~~LanLa~~-~e~r~~i~~--------------~g--~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.....-.+.+|..++.. ...|..+.. .| .-..|+.++.+..+.++..++..|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 23455677888888884 455555532 12 35789999998889999999999999998765
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.035 Score=63.31 Aligned_cols=151 Identities=24% Similarity=0.150 Sum_probs=114.3
Q ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003339 585 GAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 585 GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
.+++.|+..|. .+++++...++.+|. ..+. ..++..|+..|.+.+..++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 46888999995 566777665555543 2211 11388999999999999999999988754
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003339 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
...++.+.|+.+|++.++.++..++.++.. ......+.|..+| +++..+...|+.+|..+..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 244778999999999999999888877766 2223456788888 6778889999999987653
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
...++.|...+.+.++.++..|+..|..+.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 345677888888999999999999887664
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0036 Score=70.82 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=169.7
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCH
Q 003339 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP 640 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~ 640 (828)
.++..|..+++.-..-|.-+.++..+++|+.+|+.++..+.--+...++|+... .+-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 344555566665555677788889999999999887766667788888888654 5568889999999999999998888
Q ss_pred HHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc-h---hHHHHHHhC----cH
Q 003339 641 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E---NKARIVQAG----AV 710 (828)
Q Consensus 641 e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~-~---n~~~iv~~G----~V 710 (828)
..+.++.|+|..+..+... |-.....-++..++++..++.-.++..++..|.|++-+. . .+.-+++.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999886554 444455566899999999999999999999999996622 2 222222222 23
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHHhCCchhHHHH-Hh-CCcHHHHHHHHc----c-----C------------------
Q 003339 711 KHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAI-GQ-ENGIPVLVEVVE----L-----G------------------ 760 (828)
Q Consensus 711 ~~Ll~LL~-~~~~v~~~Al~~LanLa~~~e~r~~i-~~-~g~I~~Lv~lL~----s-----~------------------ 760 (828)
..|++.+. .++-.....+.+|.+++.+.+....+ .+ ...+..+.++|. . +
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 33444442 33444556678887777765554433 32 223333333321 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHHHhhC---------CHHhHHHHHhCCCHHHHHHhhcCCCHH
Q 003339 761 --------------------------SARGKENAAAALLQLCTN---------SSRFCSMVLQEGAVPPLVALSQSGTPR 805 (828)
Q Consensus 761 --------------------------s~~~ke~Av~~L~~L~~~---------~~~~~~~v~~~g~v~~L~~LL~~g~~r 805 (828)
+.+......|++.|+... ..+.++.+...|.-..|..+....++.
T Consensus 648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~ 727 (743)
T COG5369 648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI 727 (743)
T ss_pred ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence 111222344444443321 113344445556666666666666779
Q ss_pred HHHHHHHHHHHhhc
Q 003339 806 AKEKAQALLSYFRN 819 (828)
Q Consensus 806 ~r~kA~~lL~~L~~ 819 (828)
+|+++..+|.+++-
T Consensus 728 vrek~~taL~~l~l 741 (743)
T COG5369 728 VREKIGTALENLRL 741 (743)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998863
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.027 Score=64.41 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=181.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
..++|+.|-+.+..-++..+...+.-|..|-... .+..+.-. ...+-|..+|..+..+++..+-++|.++-..-.++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4678898989998889999988888888875543 33333332 67788889999999999877777776653211111
Q ss_pred HHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHH-HHHHHHH---HHHHc
Q 003339 620 SAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR-GKKDAAT---ALFNL 694 (828)
Q Consensus 620 ~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~-~~~~Al~---aL~nL 694 (828)
...++ ...++.++.-+.++.++++..|..-|..............-.|++..++.++.+..+. .+..|.. .|..+
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 11112 2467778888888899999988777776655444444444458888888888776553 4443333 23333
Q ss_pred hhcchhHHHHHHh-CcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 695 SIYHENKARIVQA-GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~-G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+.....+.. ++. ..+..|...+ ++..+.+-.++..+..|-....|+-........+.|++-|.+.++.+...+..++
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 333333323 443 3566677777 4556677788888888877777777777777899999999999999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++|...... .. -..+..|+++...++.-.+..+.-++|.|..
T Consensus 402 a~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 402 ASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999875421 00 1123445555555555555666666665543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0042 Score=54.41 Aligned_cols=86 Identities=31% Similarity=0.430 Sum_probs=70.5
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003339 587 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 665 (828)
Q Consensus 587 I~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~ 665 (828)
||.|+..| .++++.++..|+.+|.++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 68899988 7889999999999998442 124699999999999999999999999977 24
Q ss_pred hCChHHHHHhhcCC-CHHHHHHHHHHHH
Q 003339 666 SGAIGPLVDLLGNG-TPRGKKDAATALF 692 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~-~~~~~~~Al~aL~ 692 (828)
..+++.|.+++.+. +..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999886 4556888888874
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00038 Score=73.31 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=44.3
Q ss_pred cccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.+++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999988877788999999998863
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.04 Score=61.09 Aligned_cols=187 Identities=28% Similarity=0.334 Sum_probs=126.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
..++.++.++.+.+..++..|...|..+. ..-+++.+..+|.+.+..++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 47889999999988989988888865442 3357899999999999999999999777652
Q ss_pred hhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhH--
Q 003339 665 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR-- 741 (828)
Q Consensus 665 ~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r-- 741 (828)
...+++.|+.+|. +.+..++..|+.+|..+- ...++..|+.++....... +...+. ......|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~--a~~~~~--~~~~~~r~~ 168 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS--AAAALD--AALLDVRAA 168 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh--hhhhcc--chHHHHHHH
Confidence 3477999999999 588999999999998863 2333777788773322111 111110 0000111
Q ss_pred -----HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003339 742 -----VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814 (828)
Q Consensus 742 -----~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL 814 (828)
..+.+...++.+.+.+......++..|+.+|..+.... ..+...+...+..+...+|.++...|
T Consensus 169 a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 169 AAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 11223446889999999999999999999999988764 12334444444444444444444443
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=61.92 Aligned_cols=255 Identities=19% Similarity=0.199 Sum_probs=155.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 545 V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+.++..|+ ...+.+|..|+..+..++. +.+.-..++..|.+..|+.+|.+ -|..++.++.+|..|+.+.+.-..-+
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345566666 4567789999998888776 45566778888999999999966 57788999999999988876666666
Q ss_pred HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcc--hHHHHHhh------------CChHHHHHhhcCC--CH-----
Q 003339 624 NANAIEPLIHVLQT-GSPEARENAAATLFSLSVIED--NKIKIGRS------------GAIGPLVDLLGNG--TP----- 681 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~~------------g~I~~Lv~LL~s~--~~----- 681 (828)
+.|++..+..++-. .++..+..|+..|..|..+.- .|..|--. ..=+..|.++... ++
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccC
Confidence 77888888876654 457777777777765543211 11111000 0112222222211 11
Q ss_pred -HHHHHHHH-----------------------------------------------------------------------
Q 003339 682 -RGKKDAAT----------------------------------------------------------------------- 689 (828)
Q Consensus 682 -~~~~~Al~----------------------------------------------------------------------- 689 (828)
..+.....
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 00000001
Q ss_pred -----------------HHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcH
Q 003339 690 -----------------ALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGI 750 (828)
Q Consensus 690 -----------------aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I 750 (828)
|+..|.. .+.-..++-..|-+|.++..+ ..+..+-..|+.+|..|+.+.-+..+|.....+
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i 2090 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI 2090 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc
Confidence 1111111 122222233345555555443 122222246788899999998899999887777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCC
Q 003339 751 PVLVEVVELGSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
..++..++..-. .---|+.+|-.+... .++.+...++.|.++.|+.|+...
T Consensus 2091 ~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2091 DGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 778887764322 222677777776654 345667778899999999999854
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0068 Score=53.03 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=67.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH
Q 003339 628 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 628 l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
|+.|++.| ++++..++..++.+|..+- ...+++.|+.++++.++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899988 8888999999999998552 2366999999999999999999999999872 4
Q ss_pred hCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 003339 707 AGAVKHLVDLM-DP-AAGMVDKAVAVLA 732 (828)
Q Consensus 707 ~G~V~~Ll~LL-~~-~~~v~~~Al~~La 732 (828)
..+++.|.+++ ++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55888999988 33 3445677777764
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.075 Score=60.88 Aligned_cols=251 Identities=20% Similarity=0.146 Sum_probs=137.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN---- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~---- 617 (828)
..+.++|-..|++....++.++++.+..|+..+- -..+. ..+|..|-.+|.+.....+-.|+++|..|+.--.
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 4577888888887777899999999999887541 11111 2467888889999999999999999999974311
Q ss_pred -----cHHHHHHcC---CHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHHh-------------hCChHHHHH
Q 003339 618 -----NKSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-------------SGAIGPLVD 674 (828)
Q Consensus 618 -----~k~~I~~~g---~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~~-------------~g~I~~Lv~ 674 (828)
.-..|-+.+ ..-++..+|+.|+.+....-+..+-++.. .+..|..+++ ...+..|..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 122232221 23345667777765544443333333221 1111111110 011222222
Q ss_pred hh-cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHH----Hh
Q 003339 675 LL-GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAI----GQ 746 (828)
Q Consensus 675 LL-~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~---r~~i----~~ 746 (828)
.| +.|.-+.++.++.+| .++++..+...+.|+..|+.....-+. ...| ++
T Consensus 420 ~L~~eGg~eFK~~~Vdai----------------------sd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAI----------------------SDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHHhcccchHHHHHHHHH----------------------HHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 22 122333344443333 333333334444444443333221111 1111 11
Q ss_pred CC--------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 747 EN--------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 747 ~g--------~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+| .|..+...+--.+.-+|..|+.+|...+.+-. ..+....+...|.+.+.+.++.+|..|.-+|+.++
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 11 24444444433566788888888877666532 22333445667778888889999999999999998
Q ss_pred cc
Q 003339 819 NQ 820 (828)
Q Consensus 819 ~~ 820 (828)
..
T Consensus 555 ~~ 556 (898)
T COG5240 555 LS 556 (898)
T ss_pred hh
Confidence 54
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.18 Score=58.80 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=131.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHH----HHHhhcCC
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTA----LLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~-A~~a----L~nLs~~~ 616 (828)
....+.+.+.+.+.....+..+.+.+..+.++. .-..+.+.+++..|...+.......... +.-+ ..+|..
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-- 208 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-- 208 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC--
Confidence 456778888888888888999999999988854 3344566688888888886644333322 1111 111211
Q ss_pred ccHHHHHHcCCHHHHHHhh---cCCCHHH--------------------------------------HHHHHHHHHHhcc
Q 003339 617 NNKSAIANANAIEPLIHVL---QTGSPEA--------------------------------------RENAAATLFSLSV 655 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL---~s~~~e~--------------------------------------~~~Aa~aL~nLS~ 655 (828)
..+...++.+-.+| .+...++ +..++..|..++.
T Consensus 209 -----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 209 -----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred -----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 01112222222222 2222333 3444444444333
Q ss_pred CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003339 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 656 ~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
....+-...-..++|.|.+.|-+..+++++.+..+|..++..-+|.. =.-.+|.|++-+ ++. .-+.+++..|..-
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d---I~~~ip~Lld~l~dp~-~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD---IQKIIPTLLDALADPS-CYTPECLDSLGAT 359 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHhcCcc-cchHHHHHhhcce
Confidence 33222223333445555555555555555555555555544444433 111233333333 121 1122222222111
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHcc----CCHHHHHHHHHHHHHHhhCC--HHhHHHHHhCCCHHHHHHhhcCCCHHHHH
Q 003339 735 ATIPDGRVAIGQENGIPVLVEVVEL----GSARGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKE 808 (828)
Q Consensus 735 a~~~e~r~~i~~~g~I~~Lv~lL~s----~s~~~ke~Av~~L~~L~~~~--~~~~~~v~~~g~v~~L~~LL~~g~~r~r~ 808 (828)
... +.+++..+..++.+|+. .+...+..++.+++|+|.-- +....-.+ .-.+|.|-..+....|.+|.
T Consensus 360 tFV-----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 360 TFV-----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eee-----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHH
Confidence 110 01123345555555543 45667789999999999865 32222222 23577777777777899999
Q ss_pred HHHHHHHHhh
Q 003339 809 KAQALLSYFR 818 (828)
Q Consensus 809 kA~~lL~~L~ 818 (828)
.|...|.-+.
T Consensus 434 vaarAL~~l~ 443 (569)
T KOG1242|consen 434 VAARALGALL 443 (569)
T ss_pred HHHHHHHHHH
Confidence 9888884443
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00083 Score=75.03 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=45.1
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhc----CCCCCCCCCCcCCCCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~l 289 (828)
.+..|-+|.+.-+||+...|.|+|||-||.+|... .+-+||.|..+|+.+.-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 35789999999999999999999999999998763 35689999998887643
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0042 Score=46.11 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.8
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003339 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 576 ~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+++..+.+.|+++.|+.+|.+++++++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00071 Score=71.16 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=45.7
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003339 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
|.|-||.+.|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~ 298 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVS 298 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHH
Confidence 7899999999999999999999999999998876 569999886544 33344444333
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00098 Score=78.93 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=41.7
Q ss_pred CCcccccCccccccC-----CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 237 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 237 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
..+-.|+||.+.|.. |-.++|||.|...|+.+|+++. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7789999999999999999984 7899999843
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.13 Score=60.64 Aligned_cols=254 Identities=16% Similarity=0.215 Sum_probs=156.3
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCcc
Q 003339 540 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 540 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
+.+-..+.|++.|..+++.+|..|+..|+.||+.+|.|.-.+ -|.+..+|.+ .+.=+....+....+|+--+.-
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR 252 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence 446678999999999999999999999999999998886655 4777777754 3444566666777777543321
Q ss_pred HHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHH--hcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 619 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFS--LSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~n--LS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.-...+++|..++.+.. +.+...+..++.. ++. .+++-..+ .-++..|-.++.+.++..+..++.|+..+
T Consensus 253 ----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 253 ----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred ----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 12246889999988765 4455555555543 222 11222221 13466777778888999999999999988
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHHH
Q 003339 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~Av~~L 772 (828)
.-.+.-. +.+ --..+++.| +.+..++-+|+.+|.-+.... +-.+ .+..|+..+...+ ..-+..-+.-+
T Consensus 327 ~ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 327 LKTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred hhhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHH
Confidence 7644321 111 113456666 677889999999998776532 2222 2455555543322 35566666667
Q ss_pred HHHhhCCHHhHHHHHh-CCCHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003339 773 LQLCTNSSRFCSMVLQ-EGAVPPLVALSQS-GTPRAKEKAQALLSY 816 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~-~g~v~~L~~LL~~-g~~r~r~kA~~lL~~ 816 (828)
..+|+.+.- ..+.. +-.+..|++|.+- |+..+...|..++..
T Consensus 397 I~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 397 ISICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 777776531 22222 3345555555443 244444444444443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.046 Score=53.75 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=99.4
Q ss_pred HHHhhCChHHHHHhhcCCC------HHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC---CChHHHHHHHHHHH
Q 003339 662 KIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLA 732 (828)
Q Consensus 662 ~I~~~g~I~~Lv~LL~s~~------~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al~~La 732 (828)
.+...+++..|+.++.++. ......++.++..|..+.-..+..+....|..++..+. .+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4556789999999999886 37778899999999888777888899999999999882 35778999999999
Q ss_pred HHhCCchhHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 733 NLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 733 nLa~~~e~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
+++.+....- .+.++=.++.|+..|+..++..+.+|++.+-.|....+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999777644 44444459999999999999999999999999877654
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=55.29 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=162.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Ccc----HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSIN-DNN----KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~----k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
..|.|-.=|..++..+..-++..++-+..+ +.| ...++.+|.++.++..+...+.++...|...|..++.++..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 344444445566777777777777666544 322 233457899999999999999999999999999999988877
Q ss_pred HHHHhhCChHHH--HHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHh
Q 003339 661 IKIGRSGAIGPL--VDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLA 735 (828)
Q Consensus 661 ~~I~~~g~I~~L--v~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa 735 (828)
..|.+...+..+ +++--..+.-++...+..+..+.+ .++.....-..|.+..|..-|. .+.-+.-.++.....|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 777776655543 333333344455556666666655 4555555667898888877673 33445677888899999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC------H-HhHHHHHhCCCHHHHHHhhcCCCHHH
Q 003339 736 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS------S-RFCSMVLQEGAVPPLVALSQSGTPRA 806 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~------~-~~~~~v~~~g~v~~L~~LL~~g~~r~ 806 (828)
...-+++.+.+.|.|..+..++.. .+|-.+-.+......+-... + ..|+... -.+..-++++...++.+
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchH
Confidence 999999999999999999999964 45666665655544433321 1 1122211 24566677788888999
Q ss_pred HHHHHHHHHHhhccccc
Q 003339 807 KEKAQALLSYFRNQRHG 823 (828)
Q Consensus 807 r~kA~~lL~~L~~~~~~ 823 (828)
.+.|...|..|-..-+|
T Consensus 321 ieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEG 337 (524)
T ss_pred HHHHHHHHHhccCCcch
Confidence 99999999888766554
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.18 Score=59.86 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=172.1
Q ss_pred hhhHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc-C
Q 003339 541 IETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSI-N 615 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~-~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~-~ 615 (828)
+.+.+..|+.......+. ++..++..|..++.+= .-....... .++-.++.-..+ ++..++-.|+.+|.|--. -
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 457888888888766555 7778889999988852 222333332 445555554433 467789999999988521 1
Q ss_pred CccHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 616 DNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 616 ~~~k~~I~~~g-~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..|-..=.+.+ .+...++.-.+++.+++..|..+|..+.. +.+.-..-.....+..-+.-+++.++++...|...=.+
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11111111112 22334555567788899999999988754 22222222223344555566778888888888887777
Q ss_pred chhcchh----HHHHHH---------------hCcHHHHHHhc-C--CC-----hHHHHHHHHHHHHHhCCchhHHHHHh
Q 003339 694 LSIYHEN----KARIVQ---------------AGAVKHLVDLM-D--PA-----AGMVDKAVAVLANLATIPDGRVAIGQ 746 (828)
Q Consensus 694 Ls~~~~n----~~~iv~---------------~G~V~~Ll~LL-~--~~-----~~v~~~Al~~LanLa~~~e~r~~i~~ 746 (828)
+|...-. -..+++ .+++|.|+++| . ++ ......|-..|..++.. ....|+.
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~ 363 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVP 363 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchh
Confidence 7662211 011111 36788899988 2 11 12334444444444331 1112222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 747 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.++|.+-+-+++++.+.++.|+.+...+-.+....+..-+..++++.++.++.+.+--+++.+.+.|..+.+.
T Consensus 364 -~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 364 -HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred -hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 3455555667789999999999999998887766666656678999999999977778889999988776554
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0061 Score=45.20 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=36.0
Q ss_pred cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 657 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 657 ~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
++++..+.+.|+++.|+++|++++.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888899999999999999999999999999999863
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.11 Score=63.19 Aligned_cols=215 Identities=16% Similarity=0.145 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcC-CccH---HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH-HhccCcchHHHHHhhCChHHHHHhhc
Q 003339 603 ENAVTALLNLSIN-DNNK---SAIANANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 603 e~A~~aL~nLs~~-~~~k---~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~-nLS~~~e~k~~I~~~g~I~~Lv~LL~ 677 (828)
.+-++||.-|+.. +-+. ..-..-|.+|.++++|++...+.+..-+-+=. -|+.++..+..+++.++-...+..|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 4445555555432 2232 22335599999999999998888765444333 36778888888998877777888887
Q ss_pred CC---CHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcH
Q 003339 678 NG---TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI 750 (828)
Q Consensus 678 s~---~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~~--~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I 750 (828)
.+ +++-+..|+-.|.-++. ++-.+....+.+.+...++.|.. .+-++.-++-.|..|=. +++.|-.=++.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 73 46888888889998888 45566677788999988888843 24445556666666655 55555555678889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCC----HHhHHHH-----------HhCCCH----HHHHHhhcCCCHHHHHHHH
Q 003339 751 PVLVEVVELGSARGKENAAAALLQLCTNS----SRFCSMV-----------LQEGAV----PPLVALSQSGTPRAKEKAQ 811 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~----~~~~~~v-----------~~~g~v----~~L~~LL~~g~~r~r~kA~ 811 (828)
..|..+|....+++|..|+.+|..+..+. ++....+ .-+..+ ..|+.++..+++-++...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999988753 2221111 112223 3778888889988886655
Q ss_pred HHHHHh
Q 003339 812 ALLSYF 817 (828)
Q Consensus 812 ~lL~~L 817 (828)
..|..+
T Consensus 725 v~ls~~ 730 (1387)
T KOG1517|consen 725 VALSHF 730 (1387)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=53.01 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHH--ccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003339 724 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 724 ~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL--~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
....+.+|+|||. ++..+..+.+.|+++.++... ...+|-.+|+|++++.+||.++++.++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999998 778889999999999999876 4579999999999999999999988887765
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=58.33 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHh----------------CcHHHHHHhc-C------CChHHHHHHHHHHHHHhC
Q 003339 680 TPRGKKDAATALFNLSIYHENKARIVQA----------------GAVKHLVDLM-D------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~----------------G~V~~Ll~LL-~------~~~~v~~~Al~~LanLa~ 736 (828)
.......++..|.||+..+..+..++.. ..+..|++++ . ....-.+..+.+|+|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445667888999999988888766542 2566777766 3 223456789999999999
Q ss_pred CchhHHHHHhC--Cc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--CCCHHHHHHhhc
Q 003339 737 IPDGRVAIGQE--NG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQ 800 (828)
Q Consensus 737 ~~e~r~~i~~~--g~--I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~--~g~v~~L~~LL~ 800 (828)
.++||..+.+. +. +..|+.++.+.+..-|..++.+|.|+|.....+...+-. .++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999874 34 778888888889999999999999999988766444443 367777777666
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0043 Score=54.05 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=35.2
Q ss_pred cccccCccccccC-Ceec-CCCcchhHHHHHHHHhc--CCCCCCCCCCcCC
Q 003339 239 DFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDL--GLFVCPKTRQTLA 285 (828)
Q Consensus 239 ~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~ 285 (828)
+-.||.|..-=.| |++. .|||.|-..||.+|+.. ...+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3446655554444 6664 79999999999999985 3567999999864
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0027 Score=68.06 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCcccccCccccccC--Cee--cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003339 236 IPSDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
-...|.|||++..|.. +.+ .+|||.|...+|.+-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3568999999999954 333 5999999999999983 2356999999999987764
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0017 Score=64.17 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.7
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|.|-||.+=++.||++.|||.||-.|-.+-++.| .+|-+|+....-
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 9999999999999999999999999988877766 679999876443
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0045 Score=64.29 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=47.2
Q ss_pred CcccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCCCc----CCCCCCCCcHHHHHHHH
Q 003339 238 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIA 300 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~----l~~~~l~pN~~l~~~i~ 300 (828)
-+++|||+......||+ ..|||.|+|..|+.++... ...||+-|.. +....+.+...++..|+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr 243 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR 243 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence 45899999999999998 5799999999999998752 2349998766 22345555555555544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.46 Score=56.26 Aligned_cols=233 Identities=14% Similarity=0.125 Sum_probs=142.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH---HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR---MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr---~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~- 617 (828)
...+...+..|++.++.++.+|+..+..++..- .++ ..++..|.| |-..|..+.+++.-..+.+|..+...-.
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 345667788899999999999999999888742 122 234444543 5677778889988776666655532110
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
.+..=--.+.+|.|.-+|++....++++....+..++..........+ ..+--.|+++|+..+.+.+++|..++..++.
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 010001247899999999999999999999999988763322111111 1333468888888888888888887777655
Q ss_pred c---chhHHH---------------------HHH--hC---cHHHHHHhc-CCChHHHHHHHHHHHHHhC--CchhHHHH
Q 003339 697 Y---HENKAR---------------------IVQ--AG---AVKHLVDLM-DPAAGMVDKAVAVLANLAT--IPDGRVAI 744 (828)
Q Consensus 697 ~---~~n~~~---------------------iv~--~G---~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~e~r~~i 744 (828)
. ++.-.. ++. .| ++|.|+.=- .++..++...+.+|..+=. ++-++..|
T Consensus 955 aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 1 111100 111 11 222222211 2444455555555554432 12222222
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
. ...|.|-+-|...+..-+.-|+.++.+|+-+.
T Consensus 1035 y--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1035 Y--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred H--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 2 24566666677778888888999998888764
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.25 Score=58.67 Aligned_cols=235 Identities=13% Similarity=0.130 Sum_probs=148.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh----------------hHHHHHh--cCcHHHHHHHHcCC-------C
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMD----------------NRMVIAN--CGAINILVDMLHSS-------E 598 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~----------------nr~~i~~--~GaI~~Lv~lL~s~-------d 598 (828)
....-+..+++.+.++..++......++.+.-+ +..+... .+.+|.|+.+|.+. +
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 444556677899999888888777766543211 1112111 27888999988652 2
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH----hhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHH
Q 003339 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH----VLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLV 673 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~----lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv 673 (828)
......|..+|.-++.. +....+++++. -+++++..-++.|+-++.++-..++ .+..-...+++|.++
T Consensus 340 Wnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 22445555666544321 12223444333 5567888889988888888765443 344445569999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHchhc-chhH-HHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC--CchhHHH----HH
Q 003339 674 DLLGNGTPRGKKDAATALFNLSIY-HENK-ARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT--IPDGRVA----IG 745 (828)
Q Consensus 674 ~LL~s~~~~~~~~Al~aL~nLs~~-~~n~-~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~--~~e~r~~----i~ 745 (828)
.++.+.+.-++..++|+|+.++.. ++.+ ....-.+.++.++.-|...+.+..+++|++-+|+. .+..+.. ..
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 999988888899999999999883 3222 22344677788888787888999999999999984 1111111 21
Q ss_pred hCCcHHHHHH-HH---cc---CCHHHHHHHHHHHHHHhhCCHHhHHHH
Q 003339 746 QENGIPVLVE-VV---EL---GSARGKENAAAALLQLCTNSSRFCSMV 786 (828)
Q Consensus 746 ~~g~I~~Lv~-lL---~s---~s~~~ke~Av~~L~~L~~~~~~~~~~v 786 (828)
. ...+.++. ++ .. .....|-.|-.+|..|..++++.+..+
T Consensus 493 t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 493 T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 1 22333333 22 21 234567777788888888776554433
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.27 Score=52.95 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHH-HHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHH
Q 003339 556 SLDTQREATAELRLLAKHNMDNRMV-IANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL 631 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~-i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-g~l~~L 631 (828)
++-.+.-|+.++..+... ++.|.. .++..+-..++.+++. .+.++|.+.+-++.-|+.++.....|-.. ..+.-|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444566788999998884 455544 4555555667777765 46789999999999998887655444332 567777
Q ss_pred HHhhcCCC-HHHHHHHHHHHHHhccCcchHHHH---HhhCChHHHHHhhcCC---CHHHHHHHHH---HH----HHchhc
Q 003339 632 IHVLQTGS-PEARENAAATLFSLSVIEDNKIKI---GRSGAIGPLVDLLGNG---TPRGKKDAAT---AL----FNLSIY 697 (828)
Q Consensus 632 v~lL~s~~-~e~~~~Aa~aL~nLS~~~e~k~~I---~~~g~I~~Lv~LL~s~---~~~~~~~Al~---aL----~nLs~~ 697 (828)
+.+.+... ..+-.-+++++.|+.. ...|..| +-.|-+...+++|..+ +.+.+.+--. .| ..||..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777654 4466677788888765 2333333 3346566777777543 3333221110 00 011111
Q ss_pred ------------------------chhHHHHHH--hCcHHHHHHhcCCC--hHHHHHHHHHHHHHhC-CchhHHHHHhCC
Q 003339 698 ------------------------HENKARIVQ--AGAVKHLVDLMDPA--AGMVDKAVAVLANLAT-IPDGRVAIGQEN 748 (828)
Q Consensus 698 ------------------------~~n~~~iv~--~G~V~~Ll~LL~~~--~~v~~~Al~~LanLa~-~~e~r~~i~~~g 748 (828)
+.|...+.+ ..++..|.+++..+ .....-|+.=+..+.. .|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 234444444 34778888888322 2233445555555555 899999999999
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 749 GIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+-+.+++++.+.+++++-.|..++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999887653
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.079 Score=61.75 Aligned_cols=216 Identities=19% Similarity=0.163 Sum_probs=137.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc------CCc
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI------NDN 617 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~------~~~ 617 (828)
...-|+....+.+..++..|+..|..|.....-.+. .....+..+.+++..++..|+..+...+. ...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 334488888888999999999999888764432222 34567788888888999888777655432 111
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------------------------------------
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--------------------------------------- 658 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--------------------------------------- 658 (828)
+-..-....++..+++.++..+..+|..|+.+|..+-...+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11111223467788888888887777777766654322111
Q ss_pred ------------hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHH
Q 003339 659 ------------NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVD 725 (828)
Q Consensus 659 ------------~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~ 725 (828)
....|...|+-..+|.=|.+.--+++++|+..++.|+.+... -...++..|++++ ++...++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHH
Confidence 112233344455566666666678888888888888774432 2234566788888 44466777
Q ss_pred HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.|+.+|..|+.+-. ++..-++.+.+-|...++.+|+..-..|.+
T Consensus 429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888888877622 233446677777777777777766555544
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0038 Score=68.35 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=38.7
Q ss_pred ccccCccccccCC--e-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 240 FCCPLSLELMTDP--V-IVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 240 f~CpI~~~lm~dP--V-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
+.|-||+|-+++= | ++||+|.|=..||..|+......||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 7999999988753 3 5899999999999999998766799998843
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0043 Score=64.79 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCcccccCccccccCCeec-CCCcchhHHHHHHHHhcC-CCCCCCCCCcCC
Q 003339 237 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 285 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 285 (828)
-.+-.||+|++-..-|.++ +|||.||.-||..-+.-. ..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999999987 599999999999876643 468999998754
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.087 Score=63.86 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcc-CcchHHHHHh----hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHH
Q 003339 642 ARENAAATLFSLSV-IEDNKIKIGR----SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~-~~e~k~~I~~----~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~ 715 (828)
-.+.++.+|.|+.. +++....++. .|.++.+..+|... ++++++.|+..+.-++.+.++...++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45567788888754 5554444432 37888888888765 789999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhC
Q 003339 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 716 LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|++-+..++.++.+|..|+++++...+.++.|++..+..++ .+.++..+..|+..+..|...
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999889999999999999999988877777778766666655 678899999999999998875
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.18 Score=60.23 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=162.9
Q ss_pred HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCccHHHHHHcCCHHHHHHhhcCCC-HHHHHHH
Q 003339 569 LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENA 646 (828)
Q Consensus 569 ~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~-nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~-~e~~~~A 646 (828)
.++......|...++.|+...|+.+..-..++....+..+|. .+++.- .+ ....++++...+.+.. .--...+
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 334334566777788899999999998877777777777776 222211 11 1134445555544332 1233467
Q ss_pred HHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH-H-hCcHHHHHHhcC-CChH
Q 003339 647 AATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q-AGAVKHLVDLMD-PAAG 722 (828)
Q Consensus 647 a~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv-~-~G~V~~Ll~LL~-~~~~ 722 (828)
+.++.||+... ..|..|...-+++.+-.++-..++..+..++..+.||...+..-.+.+ + ...++.....++ ....
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 88899998854 457778887677777777888899999999999999999887665544 3 345555555553 3334
Q ss_pred HHHHHHHHHHHHhCCchh-HHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc
Q 003339 723 MVDKAVAVLANLATIPDG-RVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 723 v~~~Al~~LanLa~~~e~-r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~ 800 (828)
..-.++++++.+....++ +..+.+ ..+...++.++.+.++.+|...+.+.+++.....+....+.....++.+..+-.
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445566777766664433 332433 456788899999999999999999999977777677777777777766666544
Q ss_pred CCCHHHHHHHHHHHHHh
Q 003339 801 SGTPRAKEKAQALLSYF 817 (828)
Q Consensus 801 ~g~~r~r~kA~~lL~~L 817 (828)
-.....++.|...|...
T Consensus 723 ~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 723 LNRAPKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhhhhHHHHH
Confidence 44455666665555443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.12 Score=61.32 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=159.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN---- 617 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~---- 617 (828)
.+.+++-..+++-...+..+|++.+..|...+. +.+. .++..|-.+|.+..+-++..|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456777788888888889999999999977543 2222 2888899999999999999999999988742 21
Q ss_pred -c---HHHHHHc---CCHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHH-------------hhCChHHHHHh
Q 003339 618 -N---KSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIG-------------RSGAIGPLVDL 675 (828)
Q Consensus 618 -~---k~~I~~~---g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~-------------~~g~I~~Lv~L 675 (828)
| -..|-+. -+-..+..+|+.|+......-...+.+... .+++|..++ ..+.+..|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 1222222 244556778888876554444443333322 233332211 12556667677
Q ss_pred hcC-CCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003339 676 LGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 676 L~s-~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
|++ |.-+.+++...++..+.. +++.|. -++..|.+.+. +.+....+..+|..|.. +|-.+......+..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIE-Dce~~~i~~rILhlLG~--EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIE-DCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHH-hccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence 654 345666666666666555 444333 23344555442 22334455555555543 121122223345555
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 754 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 754 v~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+.+--.+..++-.|+.+|..+..+++ .....+.-.|.+.+.+.+..+|+.|...|+.+..
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 555555677889999999999885543 1233455667777778889999999999998873
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.049 Score=53.20 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHhhhccccchhhHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHh
Q 003339 16 FLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQ 95 (828)
Q Consensus 16 ~~~~~~~~~~~~~~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~ 95 (828)
+...+..+..+...||--+.++..-++.|.|+++||...+.-++.....-++.|...|++|+.|++.|. ..+-|=++.
T Consensus 18 Llk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s--k~~r~n~~k 95 (147)
T PF05659_consen 18 LLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS--KVRRWNLYK 95 (147)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc--cccHHHHHh
Confidence 334455556677788899999999999999999999877644455457889999999999999999986 356677788
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 003339 96 VESLMSKIRTSGLDIMLQLKS 116 (828)
Q Consensus 96 ~~~i~~~f~~~~~~l~~~L~~ 116 (828)
-..+..+++++-.+|...++.
T Consensus 96 k~~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 96 KPRYARKIEELEESLRRFIQV 116 (147)
T ss_pred hHhHHHHHHHHHHHHHHHhcc
Confidence 888999988888888885553
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.44 Score=55.64 Aligned_cols=218 Identities=18% Similarity=0.173 Sum_probs=143.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..++..|++.+..+++.+|+....+|..+...... ....-+.+.+..++......-+..|...+..+..+ ..-..
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIES 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhh
Confidence 46789999999999999999999998877653221 11224567788888877777778888888777543 22344
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHH-----HHHHhccCcchHHHHHhhCChHHHHHhh---cCCCHHHHHHHHHHHHH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAA-----TLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFN 693 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~-----aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~s~~~~~~~~Al~aL~n 693 (828)
+.+.+.+..|...+..........++. ...+|.. ..+...++.+-.+| .+....++..|..+...
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-------PFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-------CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 556678888888887654333222221 1122221 11224444444444 34456677766666555
Q ss_pred chhcchhHHHHHHhCcHHHHHH-----hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003339 694 LSIYHENKARIVQAGAVKHLVD-----LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~-----LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+.. -+...+|+.++. +++........++.+|..++.+....-...-...||.+.+.|-+..+++|+.+
T Consensus 243 i~~-------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 243 IMR-------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred HHH-------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 432 122333333333 22334455678899999999988888778878899999999999999999999
Q ss_pred HHHHHHHhhC
Q 003339 769 AAALLQLCTN 778 (828)
Q Consensus 769 v~~L~~L~~~ 778 (828)
..+|..+|.-
T Consensus 316 ~~~l~~~~sv 325 (569)
T KOG1242|consen 316 IETLLKFGSV 325 (569)
T ss_pred HHHHHHHHHh
Confidence 9999999873
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.52 Score=55.78 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=101.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHH---HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003339 669 IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR---IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 669 I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~---iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
+..++..|++.++.++..|+..+..|+..-.+|.. +...|+| |.+.| +..+++.--.++++..++..-..-...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 55667788889999999999999999875555532 3334443 66777 455666666666666555422111111
Q ss_pred -HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 745 -GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 745 -~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
=-.+.+|.|.-+|++...+++++++..+..+|..++++...--=..+---|+++|.+.+..+|+.|...+..+.
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 01357899999999999999999999999999988763322111234455788888888888888877655443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.1 Score=62.04 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
++.....|.+.+++.++.+++.|+....++-.. +.......|.++.|-.++.+.++.|..+|+.+|..+.....+..
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 456778899999999999999999999888553 45566778999999999999999999999999999865433211
Q ss_pred H-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 621 A-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
. ....-.+..++..|..-+.=.+...+.++.+-...+. +. ....+..+...|++.+..+...+..++.++.....
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE---AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh---HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 0 0011122223333322122222222222222222222 11 11345666667777777777777777777766555
Q ss_pred hHHHHHHhCcHHHHHHhcCC
Q 003339 700 NKARIVQAGAVKHLVDLMDP 719 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL~~ 719 (828)
.....+-..+-+.|+.+++.
T Consensus 272 ~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred HHHHHHHHHhcccceeeecc
Confidence 44444445555566666643
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.34 Score=58.79 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=134.7
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHH-HHHHHHHHhhcCCc
Q 003339 539 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE-NAVTALLNLSINDN 617 (828)
Q Consensus 539 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e-~A~~aL~nLs~~~~ 617 (828)
.+....+..|++.|...+.++|..|+++|.-|+..-++.+.. -.++.|+.=+-++-...+. .++.....++.-+.
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 445678999999999999999999999999998654333321 1233444322222222222 22222222222222
Q ss_pred cHHHHHHcCCHHHHHHhhcCCC------HHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 003339 618 NKSAIANANAIEPLIHVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~------~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
.-.......+++.+...|.++. ..++..++..|..+-. ..+.-.. ...+.+..++.-|.+.-..+++.|+.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 2222333444555555554332 2255555555543221 1110000 123556677777777778899999999
Q ss_pred HHHchhcchhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH---ccCCHHHH
Q 003339 691 LFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGK 765 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL---~s~s~~~k 765 (828)
|..|+..-.. .+-.+++..|++=|. .....+.--+..|+.+|.....|---.-...+|.+.++. +..+++.+
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 9999874322 245567777777663 334444555566666665433332111234688888888 66889999
Q ss_pred HHHHHHHHHHhhCCH
Q 003339 766 ENAAAALLQLCTNSS 780 (828)
Q Consensus 766 e~Av~~L~~L~~~~~ 780 (828)
|.+.-++-.+-...+
T Consensus 275 E~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHHHHHhCh
Confidence 999888877766554
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0062 Score=65.73 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=38.9
Q ss_pred CcccccCccccc-cCC------------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 238 SDFCCPLSLELM-TDP------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 238 ~~f~CpI~~~lm-~dP------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
+|=.|-||.+=| .-| =-+||||.+--.|++.|+++. .|||.||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence 567899999664 333 579999999999999999986 7899999995
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.1 Score=60.88 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=116.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc------chHHH
Q 003339 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE------DNKIK 662 (828)
Q Consensus 589 ~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~------e~k~~ 662 (828)
-|+.+....|..|+.+|+.+|+.|+..-.-- .-.....++.++.....+|..|+.+++-.+... ++...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 3777788889999999999998886421111 123455678888888889999988877654321 11111
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc-hhHHHH-------------------------------------
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARI------------------------------------- 704 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~-~n~~~i------------------------------------- 704 (828)
=....++..+.+.+.+.+..++..|+.+|..+-... +...+-
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 112356777888888887777777777777664421 111111
Q ss_pred -------------HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003339 705 -------------VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 705 -------------v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
+..|+.-+++.=| ++--+++..|+..+..|+.+..+-. ...+..|+++++..-..+|..|..
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122223333333 2224677788888888887433211 124778899999888999999999
Q ss_pred HHHHHhhC
Q 003339 771 ALLQLCTN 778 (828)
Q Consensus 771 ~L~~L~~~ 778 (828)
+|..++.+
T Consensus 433 aL~~Is~~ 440 (823)
T KOG2259|consen 433 ALTMISVH 440 (823)
T ss_pred HHHHHHHH
Confidence 99998876
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.004 Score=68.17 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHH
Q 003339 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKW 269 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~ 269 (828)
-+++.||||...|+||+|++|||+.||.|-...
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 378999999999999999999999999996643
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.5 Score=44.39 Aligned_cols=176 Identities=17% Similarity=0.148 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchH--HHHHhhCChHHHH
Q 003339 601 IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLV 673 (828)
Q Consensus 601 v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~Lv 673 (828)
=..+|+..|--++.+++.|..+..+..--.|-.+|..+ .+..|..+++++..|..+++.- ..+...+++|.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 44567777777788999999999886544555666543 3668999999999998866543 3344569999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH----hCcHH----HHHHhc--CCChHHHHHHHHHHHHHhCCchhHHH
Q 003339 674 DLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AGAVK----HLVDLM--DPAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 674 ~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~----~G~V~----~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+.+..|+...+..|...+..+..++.+-..+.. --+|. .++.-+ .++..+...++.+.-+|+.++..|.+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999888776654433322 22222 222222 46778889999999999999999988
Q ss_pred HHh---CCcH-HHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 744 IGQ---ENGI-PVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 744 i~~---~g~I-~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+.. .+.- .....+++ .++..+..-...+.++|.
T Consensus 255 L~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 255 LRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 864 1111 12222333 445555555555555553
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.16 Score=61.45 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+....+.+++.+.+.+.++++-.-.-|..+++..++- ++ =+++.+.+=++++++.++-.|++.|..+-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--AL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 4556788888888889998888888888888877622 22 2577888888999999999999999766211
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
. .-...++++.+.+.++++.+|.+|+-+++.+=. -.+..+.+.|.+..+..++.+.++.++.+|+.+|+.+...
T Consensus 123 e-l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 123 E-LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred H-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1 122468899999999999999999999998842 2344555668999999999999999999999999987543
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.007 Score=62.01 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=47.3
Q ss_pred CcccccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 238 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
..|.||+|.+.+.+-+ +-+|||.|+..|.++.+... ..||+|+.++..+++++=
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 6799999999988865 35899999999999999865 679999999999999873
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.44 Score=55.27 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=138.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh---HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
...|...+..|++..+.++.+|+.....|++.= .+ -..+...|.| |-.-|..+.+++.-..+.|+..+......
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 457888999999999999999998888877631 11 1223333432 44556667888887777777665321111
Q ss_pred H-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 619 K-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 619 k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+ -+---.|.+|.|..+|++....+..+..+.+..++.....+.-..+ ..+--.|+++|++.+.+.+++|..++..++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 1111348899999999999999999999988888764332211111 1334468889999999999988888777765
Q ss_pred c--c-hh-------------HHHH--------H-H-hC---cHHHHHHhc-CCChHHHHHHHHHHHHHhCC--chhHHHH
Q 003339 697 Y--H-EN-------------KARI--------V-Q-AG---AVKHLVDLM-DPAAGMVDKAVAVLANLATI--PDGRVAI 744 (828)
Q Consensus 697 ~--~-~n-------------~~~i--------v-~-~G---~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~--~e~r~~i 744 (828)
. + +. +.+. + + .| ++|.|+.=- .++..++...+.+++.+=.. ...+..+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 11 1111 1 1 11 222222111 23344444444444443221 1111111
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
....|.|-+.|...++.-+.-|..++.+|+-+.
T Consensus 840 --y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 840 --YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred --HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 123456666666677888888888888887664
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0076 Score=61.75 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=33.4
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhc
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL 272 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~ 272 (828)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5556689999999999999999999999999999864
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=50.73 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=98.2
Q ss_pred HHHHHhCcHHHHHHhcC-CC------hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHH
Q 003339 702 ARIVQAGAVKHLVDLMD-PA------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAAL 772 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL~-~~------~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L 772 (828)
..++..|++..|+.+++ .. ..+...++.++..|-.+.-.--...+..+|..++.++... +..+...|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 46788999999999983 22 3566778888888888755444566677889999998753 588999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
-+++.+++.....|.++=-++.|+..++..++.++.+|..++..|-..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999999998788888888899999999999999999999998877543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.54 Score=58.52 Aligned_cols=216 Identities=17% Similarity=0.197 Sum_probs=130.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChH
Q 003339 595 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG 670 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~--g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~ 670 (828)
++.+..+|..+-.+|..++..+.......+. .....|..-+++.....+...+.+|..|-.- .+....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 4457889999999999987664443333221 2233344444444455555556665555321 1222222 24466
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC------cHHHHHHhcC---CChHHHHHH--HHHHHHHhCCch
Q 003339 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLMD---PAAGMVDKA--VAVLANLATIPD 739 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G------~V~~Ll~LL~---~~~~v~~~A--l~~LanLa~~~e 739 (828)
.++-.++..+...++.|..+|..|+. .....+.| .|...+.++. .+......+ +-++..+.. +
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--e 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--E 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--H
Confidence 66666688899999999999999874 11122222 3333333331 111111222 222222222 1
Q ss_pred hHHHHHhC----CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 740 GRVAIGQE----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 740 ~r~~i~~~----g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
.. .+++. +.+..+...|.++++.+...|+..+..++...++.+-.-..+-+++.+..+++..+-.+|.++..+|.
T Consensus 816 ~~-~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FK-NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred Hh-ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11 12222 34556666677899999999999999999988865444444558999999999999999999999888
Q ss_pred Hhhc
Q 003339 816 YFRN 819 (828)
Q Consensus 816 ~L~~ 819 (828)
.|-+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 7754
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.05 Score=49.59 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcC-CccHHHHHHc
Q 003339 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSIN-DNNKSAIANA 625 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~ 625 (828)
+...++.|.+|+..++.++..+.+.|+||.+++...- .+|.+++.|+.++.||+.+ ++|+..|.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567888999999999999999999999999997754 5799999999999999865 6788877653
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0054 Score=65.52 Aligned_cols=53 Identities=23% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003339 236 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.|+.=.||+|..--.+|-++. +|..||-.||-.|..+ +.+||+|+.|..-.++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 455668999998888887765 6999999999999994 5779999988765443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.54 Score=56.95 Aligned_cols=167 Identities=20% Similarity=0.167 Sum_probs=118.7
Q ss_pred hcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 003339 552 LKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 630 (828)
Q Consensus 552 L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~ 630 (828)
+.+.+...+..|.+.+- .++.+.+ -- -..+-+++...+.|.++..-.--=|.+.+........+ +++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 55666777777776654 4444332 11 23556666666777777766666666666544322222 4677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003339 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
+.+=|.++++.+|..|+.++..|=. +.. -..+++++.+++.++++.+++.|+-|+++|-. -.+....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHH
Confidence 8888899999999999999987621 111 12468899999999999999999999999743 334456788999
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003339 711 KHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 711 ~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
..+..++ ++++.++..|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999988 78888999999999987653
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.082 Score=54.00 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHH----------------cCCHHHHHHhhcCC------CHHHHHHHHHHHHHhcc
Q 003339 598 ETKIQENAVTALLNLSINDNNKSAIAN----------------ANAIEPLIHVLQTG------SPEARENAAATLFSLSV 655 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~~----------------~g~l~~Lv~lL~s~------~~e~~~~Aa~aL~nLS~ 655 (828)
.......+++.|.||+..+.....+.. ..++..|+..+..| ...-..+.+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556778888888877666554432 23677788777652 23456788999999999
Q ss_pred CcchHHHHHhh--CC--hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHh---CcHHHHHHhc
Q 003339 656 IEDNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA---GAVKHLVDLM 717 (828)
Q Consensus 656 ~~e~k~~I~~~--g~--I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~---G~V~~Ll~LL 717 (828)
.++.|..+... +. +..|+.++.+.+..-+.-++.+|.|+|...+....+... +++|.|+--|
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999999875 44 788888888888778888999999999998888877764 4555544433
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.96 Score=49.86 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHHhhCChHHHH
Q 003339 599 TKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLV 673 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~--~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~Lv 673 (828)
...++.++..|.++.........+.+ .-.+..+.+.++.|..+-+..|+.++.-|+.. .+....+. ....|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHH
Confidence 44555555555554322222222221 13567788888888765556666665555543 12233332 25678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHchhcchh-HHHHH-HhCcHHHHHH--hc--C---------CChHHHHHHHHHHHHHhC
Q 003339 674 DLLGNGT--PRGKKDAATALFNLSIYHEN-KARIV-QAGAVKHLVD--LM--D---------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 674 ~LL~s~~--~~~~~~Al~aL~nLs~~~~n-~~~iv-~~G~V~~Ll~--LL--~---------~~~~v~~~Al~~LanLa~ 736 (828)
..+.+++ ...+..++.||.-++..... -..+. -...+..+.. .+ + ++..++..|+..|+.|.+
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 8888764 45556666677666552111 11111 0122221111 11 1 124688899999998887
Q ss_pred Cchh-H-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 737 IPDG-R-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 737 ~~e~-r-~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
.-+. . .... ...++.|+.+|.+.+..+|..|..+|.-|..
T Consensus 216 ~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 216 TLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4433 2 2222 3469999999999999999988888766643
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.039 Score=44.09 Aligned_cols=55 Identities=27% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 640 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
+.+|..|+.+|.+++........-....+++.|+.+|++.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578999999999876555444445568899999999999999999999999875
|
... |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.4 Score=49.18 Aligned_cols=271 Identities=12% Similarity=0.079 Sum_probs=163.1
Q ss_pred hhhHHHHHHHHhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCcHH--HHHHHHcC-CCHHHHHHHHHHHHH-hhc-
Q 003339 541 IETQVRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAIN--ILVDMLHS-SETKIQENAVTALLN-LSI- 614 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~-~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~--~Lv~lL~s-~d~~v~e~A~~aL~n-Ls~- 614 (828)
+.+.+..+++..-.+.| ..+..++..+...+.. ..-...+...++|- .....++. .+..++-.|+.+|.+ |-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 45677788888765544 3567788888877663 22234444444332 22233433 467788889999887 321
Q ss_pred -----CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 003339 615 -----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 688 (828)
Q Consensus 615 -----~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al 688 (828)
++.++..+ +...++.-+.++.+++..|.++|..+-. +...-..+.+..........+++.+.++...|+
T Consensus 210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qav 284 (858)
T COG5215 210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAV 284 (858)
T ss_pred HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 12223222 2234455556678888888888887643 222223444444455556777888888888887
Q ss_pred HHHHHchhcc-h----------------hHHHHHHhCcHHHHHHhc-C--CC-----hHHHHHHHHHHHHHhCCchhHHH
Q 003339 689 TALFNLSIYH-E----------------NKARIVQAGAVKHLVDLM-D--PA-----AGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 689 ~aL~nLs~~~-~----------------n~~~iv~~G~V~~Ll~LL-~--~~-----~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
..-..+|... + +-.+..-+.++|.|+.|| . ++ ...-..|...|...+.. ....
T Consensus 285 EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~ 362 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDK 362 (858)
T ss_pred HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhH
Confidence 7655555421 1 011122345889999998 2 11 22333444444433321 1122
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|++. ++..+-.-+++.+...+|.|+.++..+..+..+.+..-.-..++|.+..++.+..--++..++|++..+..+
T Consensus 363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 3332 334444456788999999999999999887655555444566888898888877778899999988877654
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.98 Score=47.97 Aligned_cols=191 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcC-------C--CH---HHHHHHHHHHHHhhcCCccHHHH
Q 003339 556 SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHS-------S--ET---KIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s-------~--d~---~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
+++.+..|+.+|..--...++---.+-. .|.+..|++=+-+ + .+ .-..+|++.|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677778877776543333332223333 3888887763321 1 12 23345666666678899999999
Q ss_pred HHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003339 623 ANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
.++...--|..+|+..+ +..|..+++++..|...++. -..+...+++|..++.+..|+.-.|..|.-.+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99986666666665543 55889999999999874443 344456799999999999999999999999999988
Q ss_pred hcchhHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh
Q 003339 696 IYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ 746 (828)
Q Consensus 696 ~~~~n~~~iv~--------~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~ 746 (828)
.++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77665444332 22333344433 67888999999999999999999998864
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.3 Score=58.27 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+....+.+++.....+.+.++-.---+.+.++..+.- ..+++..++.=..++++.++--|++.+.-+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 3456788899999888877777777777777766532 2256777777667789999988888876553221
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
+ -.-...+|.+.++.+++.++..++..+.++ ++.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+
T Consensus 118 -i-~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 -I-TEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred -H-HHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 1 113577899999999999999888877766 344555666679999999999999999999999999998774432
Q ss_pred -HHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCch--hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 701 -KARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 701 -~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e--~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
..-.+....+..+++.+.. ..-..-+.+|..++..-. .+++. ..+..+...+.+.+..+.-.++.+++++..
T Consensus 194 ~~~~~l~~~~~~~lL~al~e--c~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNE--CTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCcccccHHHHHHHHHHHHH--hhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 1111222233344444411 111223445555554211 12211 234566666777777778888888888776
Q ss_pred CCHHhHHHHHhCCCHHHHHHhhcCCC
Q 003339 778 NSSRFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 778 ~~~~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
.-.. ....+-...-++|+.++....
T Consensus 269 ~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 269 YLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHH-HHHHHHHHhcccceeeecccc
Confidence 5544 222223345666666666654
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.019 Score=60.60 Aligned_cols=47 Identities=15% Similarity=0.411 Sum_probs=37.8
Q ss_pred ccccCccccc--cCCe-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 240 FCCPLSLELM--TDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm--~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.-|-||.+=| -|-+ ++||.|.|-+.||.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4699998654 2444 489999999999999999655679999987754
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.94 Score=55.16 Aligned_cols=263 Identities=16% Similarity=0.153 Sum_probs=140.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHH
Q 003339 547 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIAN 624 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~ 624 (828)
.|++.+.+.+.+.+.-|+.-|. .|-+. .-+-..=.+...+..|+++|.+.+.+||..|+.+|+-|+.- ++.+ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--le- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--LE- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--HH-
Confidence 7889999888888887776664 33332 11111112346888999999999999999999999988621 1111 10
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHH-HhccCcc-----hHHHHHhhCChHHHHHhhcC-C-CHHHHHHHHHHHHHchh
Q 003339 625 ANAIEPLIHVLQTGSPEARENAAATLF-SLSVIED-----NKIKIGRSGAIGPLVDLLGN-G-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~-nLS~~~e-----~k~~I~~~g~I~~Lv~LL~s-~-~~~~~~~Al~aL~nLs~ 696 (828)
-.++.|+.-+-+|....+..+.-.|. .++..+. ....+ -....+.|...+.- + ...++..++..+.-+-.
T Consensus 85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV-~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATV-CKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHH-HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 12333333333444444443333332 2222221 11111 11223344443322 2 23355566655554322
Q ss_pred c-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003339 697 Y-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 773 (828)
Q Consensus 697 ~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~ 773 (828)
. .+--.. ...+....++.-| .+...++.+|+.+|+.|+..-.+ .... +.+..|++=|. ..+.....--+-+|.
T Consensus 163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLYV--ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHHH--HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 1 110000 2234444444444 45567889999999999874221 1111 12333333332 234455555566677
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhh---cCCCHHHHHHHHHHHHHhhcc
Q 003339 774 QLCTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL---~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.+|+..+. +-----..+++.+.... +.++++.|++....|..|-.+
T Consensus 239 ~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 239 AICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 77775441 11111145788888888 667889999999998877553
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.3 Score=49.96 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=152.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC---------------CCHHHHHHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS---------------SETKIQENA 605 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s---------------~d~~v~e~A 605 (828)
.+.+++...+.|.+.+..+...++..+..+++.+++.-..+.+ .++-|+..|+. .||-+|...
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 3567777788888888888888889999999988777666665 66777776631 378899999
Q ss_pred HHHHHHhhcCCcc-HHHHHHc--------------C------CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHH
Q 003339 606 VTALLNLSINDNN-KSAIANA--------------N------AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKI 663 (828)
Q Consensus 606 ~~aL~nLs~~~~~-k~~I~~~--------------g------~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I 663 (828)
+..|.-|-.++.. ...+.+- | ++..+..+. .+...+..|+.+|...-.+.++- ..+
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeee
Confidence 9988888655332 2222110 0 111111111 23345555666665443322221 111
Q ss_pred H--------h--hCC----hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHH
Q 003339 664 G--------R--SGA----IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAV 728 (828)
Q Consensus 664 ~--------~--~g~----I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al 728 (828)
+ . ..+ =..+++.|++.+..+++.|+..++.|.- ..|... .+..|+.+| ..+++....+.
T Consensus 333 aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~-----mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRV-----MVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHH-----HHHHHHHHHHhccHHHHHHHH
Confidence 0 0 011 1246667777788888888888777633 333332 334566666 45666666666
Q ss_pred HHHHHHhC--CchhHHHH-------------HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC--------------
Q 003339 729 AVLANLAT--IPDGRVAI-------------GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS-------------- 779 (828)
Q Consensus 729 ~~LanLa~--~~e~r~~i-------------~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~-------------- 779 (828)
.-+..++. .|+.+-.| ++..++..++.++.++.+...+.++.-|+.-...+
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa 486 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVA 486 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 66666655 33333211 12345777888887664544444444443322211
Q ss_pred ----HHhHHHHH------------hCCCHHHHHHhhcCCC--HHHHHHHHHHHHHhhcc
Q 003339 780 ----SRFCSMVL------------QEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 780 ----~~~~~~v~------------~~g~v~~L~~LL~~g~--~r~r~kA~~lL~~L~~~ 820 (828)
+++-+.++ +..++..|..++.+.+ ..++..|..+|--|..+
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR 545 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 01111222 2346778888887763 56777777766655543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.7 Score=53.50 Aligned_cols=239 Identities=18% Similarity=0.180 Sum_probs=144.0
Q ss_pred HHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc----CCC----HHHHHHHH
Q 003339 581 IANCGAINILVDMLHSS-----ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA 647 (828)
Q Consensus 581 i~~~GaI~~Lv~lL~s~-----d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~----s~~----~e~~~~Aa 647 (828)
+.+.|++..|+.++.+- +..+....+..|...+.-+.||..+++.|+++.|++.|. .+. .++.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45679999999999762 344555666666666666889999999999999998874 333 55666666
Q ss_pred HHHHHhccCcc---hHHHHH--hh--------CChHHHHHhhcCC----CHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003339 648 ATLFSLSVIED---NKIKIG--RS--------GAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 648 ~aL~nLS~~~e---~k~~I~--~~--------g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
.++..|..... ...... .. .-+..|++.+.+. ++.+....+++|-+|+...+.+...+-.-.-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 55555433111 111100 11 2256666666553 5788888999999998866655433322222
Q ss_pred HHHHHh--cCC----Ch-HHHHHHHHHHHHHhCCchh---HHHHHhCCcHHHHHHHHccC--------CHHHH-------
Q 003339 711 KHLVDL--MDP----AA-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SARGK------- 765 (828)
Q Consensus 711 ~~Ll~L--L~~----~~-~v~~~Al~~LanLa~~~e~---r~~i~~~g~I~~Lv~lL~s~--------s~~~k------- 765 (828)
+. +++ ++. +. -..+..+.+..+|-.+..| |..|++.|++...+++|... +++-+
T Consensus 273 p~-l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PY-LDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred Hh-cChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 21 122 111 11 1223333444444334333 68889999999999888542 33333
Q ss_pred -HHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhccc
Q 003339 766 -ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 766 -e~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~~ 821 (828)
..+...|.-||.+... .+..+..++++.|-.|=+.. +..+-..|..+|..|+...
T Consensus 352 Lp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 3577788888887653 34446667776666655444 3456667777777776643
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.079 Score=42.27 Aligned_cols=54 Identities=26% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003339 681 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 681 ~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
+.++..|+++|.+++........-....+++.|+.+| +++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999988777666667889999999999 67778999999999875
|
... |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.7 Score=49.55 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=129.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~ 620 (828)
.+..+.+.++++..++.++++|+-+...+-+..++--.. +++....+|...+..|.-.++..+..++.. ++.-.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 456788888899999999999998888877766544332 233444444444444444444444443321 21111
Q ss_pred HHHHcCCHHHH---------------------------------HHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh-
Q 003339 621 AIANANAIEPL---------------------------------IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 666 (828)
Q Consensus 621 ~I~~~g~l~~L---------------------------------v~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~- 666 (828)
.+-+ .++.+ +++|.+++...-+....+|..++...+.-..++..
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI 293 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI 293 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH
Confidence 1111 22333 33444555555455555555544433322222221
Q ss_pred --CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC-----------cH----HHHHHhc-CCChHHHHHHH
Q 003339 667 --GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG-----------AV----KHLVDLM-DPAAGMVDKAV 728 (828)
Q Consensus 667 --g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G-----------~V----~~Ll~LL-~~~~~v~~~Al 728 (828)
.++..+..+ ..+...+..|+.+|.....+.++-.+-+... +| ..+++.| +++..+..+|+
T Consensus 294 LYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrral 371 (866)
T KOG1062|consen 294 LYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRAL 371 (866)
T ss_pred HHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 122222222 1245566677777776655554332222111 11 1234444 56677777777
Q ss_pred HHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-HH------hHHHHH-------hCCCHHH
Q 003339 729 AVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS-SR------FCSMVL-------QEGAVPP 794 (828)
Q Consensus 729 ~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~-~~------~~~~v~-------~~g~v~~ 794 (828)
.++..|......+. .+..|+++|.+.++..+...+.-+..++... +. ..-.|+ ...++..
T Consensus 372 ELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~n 445 (866)
T KOG1062|consen 372 ELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNN 445 (866)
T ss_pred HHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHH
Confidence 77766654322221 2566778888788888888888888777642 21 111222 2235667
Q ss_pred HHHhhcCC
Q 003339 795 LVALSQSG 802 (828)
Q Consensus 795 L~~LL~~g 802 (828)
|+.++.++
T Consensus 446 ll~LIa~~ 453 (866)
T KOG1062|consen 446 LLRLIANA 453 (866)
T ss_pred HHHHHhcC
Confidence 77777766
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.26 E-value=2.4 Score=50.36 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d--~~v~e~A~~aL~nLs~~~~~ 618 (828)
++..+..+-..|.+.++..+..|+.++.++... +++..+. .-|+ ++|-+.+ .-++..|+-+|+.|-.. +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--s 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--S 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--C
Confidence 355667777788888988889999999988653 3444332 2333 5555543 44667777777776432 1
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~ 655 (828)
-..+--.+....++++|...+..+.-.+...+..|+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 1122223566778888877766555555555555544
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.6 Score=51.86 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=144.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCH
Q 003339 550 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAI 628 (828)
Q Consensus 550 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l 628 (828)
+.+++.+...---|+..|..+...+ -.| +.-+-++.+|++.-+-++..|+.+|..+.. +++. -..++
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~F 183 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCF 183 (877)
T ss_pred HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhH
Confidence 3344666555555666666655532 233 334578899999999999999999988753 2321 12578
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHH
Q 003339 629 EPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 629 ~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
|.|..-|..+++.++..|+.+++.|+. ++.+-- ..-|.+.++|-+. +-=....-+....+|+....- +.
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----Lg 254 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LG 254 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hh
Confidence 999999999999999999999999986 443322 3345666666543 222333344456666654332 33
Q ss_pred hCcHHHHHHhcCCC--hHHHHHHHHHHH--HHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003339 707 AGAVKHLVDLMDPA--AGMVDKAVAVLA--NLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 707 ~G~V~~Ll~LL~~~--~~v~~~Al~~La--nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
..++++|.+++++. ..+.-+|+.++- ++.. .++.-+.+. -.++.|-.++.+.++..+.-++-++.-+....+.
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 44667777777322 233333333221 2222 222222221 1356666677777888888888888877776664
Q ss_pred hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 782 FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 782 ~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.++.- -+.++..|.+.++.+|-+|..+|.-+
T Consensus 333 ~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 333 AVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 33322 23455566666666777776666544
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=49.36 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=145.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH-----HHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~-----~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~ 614 (828)
.+.+..|+..|..-+.+.+..++.....+.+.....+. .+... ..+..|+.-- +++++--.+...|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 46788899999988999999999999888877655543 22221 2333333322 466677788888888888
Q ss_pred CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHh-h--CChHHHHHhhcCCCHHHHHHHHHH
Q 003339 615 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR-S--GAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 615 ~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~-~--g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
++.-...+.....+..+......++-++...|..++..|-. +......... . .++.....||.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 87777778888889999999999999999999999988543 4333222222 2 677888999999999999999999
Q ss_pred HHHchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003339 691 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
|..|-.+..|...|.. ..-+..++.+| +....++-+|..++.....+|..-..|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 9999999988876654 55777788888 677889999999999888876544333
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.036 Score=57.27 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=42.8
Q ss_pred CcccccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003339 238 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
..|+|||++-.|.+-. +-+|||.|.-.++++.- ..+||+|++.+..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 5799999999999875 46899999999988874 356999999999887553
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=47.55 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL 612 (828)
-..+..|++.|. +.++....-|+.-|..+++.-|..|..+.+.|+-..+..++.++|++|+.+|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 357899999994 55677777899999999999999999998899999999999999999999999998765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.2 Score=47.07 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHHchhc---chhHHHHHHhCcHHH
Q 003339 638 GSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGAVKH 712 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~---~~n~~~iv~~G~V~~ 712 (828)
.....|+.++..|..+-........+.. ...+..+...++.+..+-+..|+.++.-|+.. .+.... +-..+.|.
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~~~~~~ 133 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFEELKPV 133 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHHHHHHH
Confidence 3455666666666555432222222222 14577788888888766667777777666654 223333 33457778
Q ss_pred HHHhc-CCC--hHHHHHHHHHHHHHhC---C-chhHHHHHhCCcHHH--HHHHHcc-C---------CHHHHHHHHHHHH
Q 003339 713 LVDLM-DPA--AGMVDKAVAVLANLAT---I-PDGRVAIGQENGIPV--LVEVVEL-G---------SARGKENAAAALL 773 (828)
Q Consensus 713 Ll~LL-~~~--~~v~~~Al~~LanLa~---~-~e~r~~i~~~g~I~~--Lv~lL~s-~---------s~~~ke~Av~~L~ 773 (828)
|..++ +.. ...+..++.+|+.++. . .+.....++ .+.. ....++. + ++.+.-.|+.+-.
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 88877 322 3344455555555544 2 122221111 2221 1112222 1 2334444444433
Q ss_pred HHhhCCHH-hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 774 QLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
-|...-+. .....+ ...++.|..+|.+.+..+|-.|.+.|.+|-..
T Consensus 212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33333222 222222 34689999999999999999999998887543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=3 Score=43.77 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHH
Q 003339 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLI 632 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----~d~~v~e~A~~aL~nLs~~~~--~k~~I~~~g~l~~Lv 632 (828)
...|+..+.-++.+ ++.|..+.++..--.|-.+|.. ..+.++-.++.+++.|..+++ .-..+...+.||..+
T Consensus 96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 35677777777775 5788888888766666677753 356788899999999876543 344456789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--------hCChHHH-HHhhcCCCHHHHHHHHHHHHHchhcchhHHH
Q 003339 633 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 633 ~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--------~g~I~~L-v~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
+.+..|+...+.-|+.++--+-.+|..-..|.. ...+..+ ..+.+.++.+..+.++++..+|+.++..+..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999988877776654322221 1223333 4445567899999999999999999887765
Q ss_pred H
Q 003339 704 I 704 (828)
Q Consensus 704 i 704 (828)
+
T Consensus 255 L 255 (293)
T KOG3036|consen 255 L 255 (293)
T ss_pred H
Confidence 4
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.8 Score=42.86 Aligned_cols=220 Identities=16% Similarity=0.099 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHH-Hc-CCHHHHHH-------hhcCCC--H---HHHHHHHHHHHHhccCcchHHHH
Q 003339 598 ETKIQENAVTALLNLSINDNNKSAIA-NA-NAIEPLIH-------VLQTGS--P---EARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~-~~-g~l~~Lv~-------lL~s~~--~---e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
+++.+++|+.-|..--..-.+-..+. .. |.+..|++ .|..+. . .-..+|++.|-.++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 67777777766654422222333333 33 66666543 233332 1 33557788888889999999999
Q ss_pred HhhCChHHHHHhhcCCC-----HHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHHHh
Q 003339 664 GRSGAIGPLVDLLGNGT-----PRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLA 735 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~-----~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa 735 (828)
.+....-.|..+|...+ +..+-.+++.++.|.. +.+....+...+++|..++.++ .++-....|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887767777776542 5678889999999987 4456667788999999999984 33444556778888888
Q ss_pred CCchhHHHHHhCC--------cHHHHH-HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh---CCCHHHHHHhhcCCC
Q 003339 736 TIPDGRVAIGQEN--------GIPVLV-EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ---EGAVPPLVALSQSGT 803 (828)
Q Consensus 736 ~~~e~r~~i~~~g--------~I~~Lv-~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~---~g~v~~L~~LL~~g~ 803 (828)
.++.|-..+.+.. ++..++ .+.+..+++.-.+.+.+-..|+.+.. .+..+.+ ...-.....-+-.++
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~~~LP~~Lrd~~f~~~l~~D 246 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALRQCLPDQLRDGTFSNILKDD 246 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHHHHS-GGGTSSTTTTGGCS-
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHHHhCcHHHhcHHHHHHHhcC
Confidence 8888877665421 222222 23456899999999999999998753 4555432 111111111222346
Q ss_pred HHHHHHHHHHHHHhh
Q 003339 804 PRAKEKAQALLSYFR 818 (828)
Q Consensus 804 ~r~r~kA~~lL~~L~ 818 (828)
+.+++.-..++.++.
T Consensus 247 ~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 247 PSTKRWLQQLLSNLN 261 (262)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 778877777777664
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=93.72 E-value=7.4 Score=44.17 Aligned_cols=96 Identities=13% Similarity=0.244 Sum_probs=74.2
Q ss_pred HHH-cCCHHHHHHhhcCCC---HHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhc-CC---CHHHHHHHHHHHH
Q 003339 622 IAN-ANAIEPLIHVLQTGS---PEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLG-NG---TPRGKKDAATALF 692 (828)
Q Consensus 622 I~~-~g~l~~Lv~lL~s~~---~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~-s~---~~~~~~~Al~aL~ 692 (828)
+++ ...+..|..++++.. ..+...|+.++..+..++.. -..|.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 444556777777653 56777888888887765554 455556699999999988 54 5677777777999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc
Q 003339 693 NLSIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
.||.+.....++.+.+.++.+++++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHh
Confidence 9999999999999999999999987
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.022 Score=63.32 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=36.2
Q ss_pred cccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 241 CCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 241 ~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
.||+|++=|.+-| ++.|.|+|--+|+.+|+. .+||+||--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 7999999999988 368999999999999976 46999986544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.37 Score=43.66 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=55.8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 748 g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~--~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
..++.++..+.+.+.++|..|+.+|++++.... ..++. ..++..|.+++.+.++++|..|.-+-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 468888888999999999999999999997644 23332 468899999999999999988877777765
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.043 Score=60.53 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=37.9
Q ss_pred ccccCccccccC---CeecCCCcchhHHHHHHHHhcCC--CCCCCCCC
Q 003339 240 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ 282 (828)
Q Consensus 240 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~ 282 (828)
|.|||..+-=.| |+.+.|||..+|.+|.+-..+|. ..||.|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 689999988776 88999999999999999999886 56999943
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.033 Score=60.76 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=41.1
Q ss_pred cccCccccccCCeecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 003339 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 287 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 287 (828)
.|-||-+==+|=-|-||||-.|-.|+..|..+. +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999988888788999999999999999653 68899999887654
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.8 Score=52.48 Aligned_cols=219 Identities=18% Similarity=0.226 Sum_probs=132.5
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCH
Q 003339 553 KSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAI 628 (828)
Q Consensus 553 ~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~-~~k~~I~~~g~l 628 (828)
++.+..+|.++-+.|..++.. +.......+. .....|..-+++...-++..++.+|..|-.. + ++...+. ..|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHH
Confidence 355788999999999988875 3333332221 3344455555556666777777777666322 2 2222222 235
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc----CcchHHHHHhhCChHHHHHhhcCC--CHHHHHHH--HHHHHHchhcchh
Q 003339 629 EPLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHEN 700 (828)
Q Consensus 629 ~~Lv~lL~s~~~e~~~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~A--l~aL~nLs~~~~n 700 (828)
+-++-.++.-+...+.+|..+|..+.. .++.... ....|...+..+..+ .......| +.++..+.. .
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 555555577789999999999998872 1111111 122556666666554 23333333 333333332 2
Q ss_pred HHHHHHhCcHHHHHHh----c-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 701 KARIVQAGAVKHLVDL----M-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~L----L-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
...+++.+.++.+++. | +....++..|++.+..++. .++-.-.-.....++.+..++.......+...-..|-.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2234555566666654 3 5778899999999999887 55555544445578888888888788888777777777
Q ss_pred HhhCC
Q 003339 775 LCTNS 779 (828)
Q Consensus 775 L~~~~ 779 (828)
|++..
T Consensus 896 Lirkf 900 (1176)
T KOG1248|consen 896 LIRKF 900 (1176)
T ss_pred HHHHh
Confidence 77653
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.045 Score=60.23 Aligned_cols=62 Identities=19% Similarity=0.469 Sum_probs=49.6
Q ss_pred cccccCccccccCCe-----ecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003339 239 DFCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
...||||++-..=|+ ++.|||-|--.||++|+-+. ...||.|.-.-...++.|-+.+|...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 357999999888886 47899999999999999532 234999988777788988888775543
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.089 Score=41.58 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=25.7
Q ss_pred cccccCccccccCCee-cCCCcc--hhHHHHHHHHh-cCCCCCCCCCCc
Q 003339 239 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWID-LGLFVCPKTRQT 283 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~-~~~~~cP~t~~~ 283 (828)
.+.|||+...|+-||- ..|.|. ||-....+... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999997 568775 88755555444 344569999875
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.81 E-value=22 Score=41.71 Aligned_cols=274 Identities=13% Similarity=0.065 Sum_probs=155.9
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHH-hhccChhhHHHHHhc--C-------cHH-HHHHHHcCCCHHHHHHHHHH
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRL-LAKHNMDNRMVIANC--G-------AIN-ILVDMLHSSETKIQENAVTA 608 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~-La~~s~~nr~~i~~~--G-------aI~-~Lv~lL~s~d~~v~e~A~~a 608 (828)
..++..|++.|-.. +++.+..|.-.|.+ |...+++-+....+. | -|+ ..++.|.+..+..-..|..+
T Consensus 38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql 117 (858)
T COG5215 38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL 117 (858)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 44555666666533 44555555555543 333233222222211 1 111 23445666777777777777
Q ss_pred HHHhhcCCccHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhC-ChHHHH-HhhcCC-CHHHH
Q 003339 609 LLNLSINDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSG-AIGPLV-DLLGNG-TPRGK 684 (828)
Q Consensus 609 L~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g-~I~~Lv-~LL~s~-~~~~~ 684 (828)
+..++..+-.-. ...|.+..++.....+ ....+..++.++.+.+........+.... ++-.++ --++++ +..++
T Consensus 118 ~aaIA~~Elp~~--~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avR 195 (858)
T COG5215 118 LAAIARMELPNS--LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVR 195 (858)
T ss_pred HHHHHHhhCccc--cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHH
Confidence 766653211000 0112333333333333 35578899999999988766655555553 233333 334555 56788
Q ss_pred HHHHHHHHH-chhcchhHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHH
Q 003339 685 KDAATALFN-LSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV 757 (828)
Q Consensus 685 ~~Al~aL~n-Ls~~~~n~~~iv~~G~V~~Ll~LL-----~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL 757 (828)
..|+.||++ |-.. +..+-.++-...++... .++.++...|.+.|..+.. +-.--+..++..........+
T Consensus 196 LaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m 272 (858)
T COG5215 196 LAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM 272 (858)
T ss_pred HHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999998 4332 23344444444455443 4677888899988887765 223333455544556667788
Q ss_pred ccCCHHHHHHHHHHHHHHhhCCHHhHHHHH----------------hCCCHHHHHHhhcCCC------H-HHHHHHHHHH
Q 003339 758 ELGSARGKENAAAALLQLCTNSSRFCSMVL----------------QEGAVPPLVALSQSGT------P-RAKEKAQALL 814 (828)
Q Consensus 758 ~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~----------------~~g~v~~L~~LL~~g~------~-r~r~kA~~lL 814 (828)
++.++++.-.|+..-..+|...-+.--... -..++|.|+.||...+ . .....|..+|
T Consensus 273 ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCL 352 (858)
T COG5215 273 KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCL 352 (858)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHH
Confidence 999999999999987788875321111111 1236888999998732 1 3556677788
Q ss_pred HHhhcc
Q 003339 815 SYFRNQ 820 (828)
Q Consensus 815 ~~L~~~ 820 (828)
.++...
T Consensus 353 qlfaq~ 358 (858)
T COG5215 353 QLFAQL 358 (858)
T ss_pred HHHHHH
Confidence 877653
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.15 Score=55.00 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=41.2
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
+|=.||||..=--..|..||||.-|..||.+|+.+. ..|-+|+.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 678999999888888899999999999999999865 569999765543
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.039 Score=43.50 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred cccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 241 CCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
.|-||.+-..|-|+--|||. .|-.|=.+-|..++..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998889889999986 788887777777778999999765
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.74 E-value=8.9 Score=42.77 Aligned_cols=202 Identities=13% Similarity=0.082 Sum_probs=139.7
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHH-HHHhh--CChHHHHHhhcCC--CHHHHHHHHHHHHH
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKI-KIGRS--GAIGPLVDLLGNG--TPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~-~I~~~--g~I~~Lv~LL~s~--~~~~~~~Al~aL~n 693 (828)
..+...+.+..|+..|..-+-+++..++.+..++-... +.+. ..++. .-.+.++..|-.+ ++++--.+-..|..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 44556789999999999999999999988888876532 2222 11111 2213333333222 56666677777777
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh-CCchhHHHHHhCC---cHHHHHHHHccCCHHHHHHH
Q 003339 694 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA-TIPDGRVAIGQEN---GIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa-~~~e~r~~i~~~g---~I~~Lv~lL~s~s~~~ke~A 768 (828)
...++.....++....+..+.+.+ .++-++...|..++.-|- .|..-...+...+ .+..+..+|.+++.-+|.++
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 777887788888888888888887 567788999999998754 4776667766644 47788889999999999999
Q ss_pred HHHHHHHhhCCHHhHH--HHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 769 AAALLQLCTNSSRFCS--MVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 769 v~~L~~L~~~~~~~~~--~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+..|..|-.+...... ..+ ...-+..++.++.+....++-.|-.+.+.+...+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999876542221 222 2345677788888888889999999998887654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.9 Score=48.95 Aligned_cols=132 Identities=18% Similarity=0.254 Sum_probs=76.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-----------CCHHHHHHHHHHHHHchhcch
Q 003339 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-----------~~~~~~~~Al~aL~nLs~~~~ 699 (828)
++++|.+++.+++..+....+-|+ ...-+..++.+|+. .+.+-+..-+.+|...+..-.
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLv----------ssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLV----------SSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhh----------hhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 445556666666666666655554 33445666666642 123445666667776665322
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHh
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLC 776 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~ 776 (828)
. +.+.+|+.|++.+ +.+.......+..+...-. .+.-|..| +..|++-+.. .+.++-+.|+|++...|
T Consensus 392 ~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 392 E----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred H----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 2 5678899999999 4444333333433333222 33333333 3444444432 57788899999999999
Q ss_pred hCCHH
Q 003339 777 TNSSR 781 (828)
Q Consensus 777 ~~~~~ 781 (828)
....+
T Consensus 463 e~~~~ 467 (948)
T KOG1058|consen 463 EGLSE 467 (948)
T ss_pred hhhHH
Confidence 87664
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=92.56 E-value=3.3 Score=46.66 Aligned_cols=239 Identities=18% Similarity=0.206 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHH-HHHHHHhhcCCc
Q 003339 541 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENA-VTALLNLSINDN 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A-~~aL~nLs~~~~ 617 (828)
..+.|..+++.|. +....+|+.++-.|..-+. ++..|..+...|.+..++..+.. .+..+.-.+ +.++.-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 4567899999998 3355677788888887777 67899999999999999999954 333244333 444444555555
Q ss_pred cHHHHHHcCCHHHHHHhhcC--C---CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc---------CCCHHH
Q 003339 618 NKSAIANANAIEPLIHVLQT--G---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRG 683 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s--~---~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---------s~~~~~ 683 (828)
+...+.+.+.+..++.+|+- . .......-. .+++ .+ ....+..+..++. ......
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhh-------HH-HHHHHHHHHHHHhccccccccCCccccc
Confidence 55555566677777888871 1 000000000 0000 00 0111121222221 112234
Q ss_pred HHHHHHHHHHchh---------------cchhHHHHHHhCcHHHHHHhcC----CC-------------hHHHHHHHHHH
Q 003339 684 KKDAATALFNLSI---------------YHENKARIVQAGAVKHLVDLMD----PA-------------AGMVDKAVAVL 731 (828)
Q Consensus 684 ~~~Al~aL~nLs~---------------~~~n~~~iv~~G~V~~Ll~LL~----~~-------------~~v~~~Al~~L 731 (828)
+..|+.+|-.++. ..-.|..+...|++..+++++. .. ....+.++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 4455555555531 1223566777888888888751 10 12456799999
Q ss_pred HHHhC-CchhHHHHHhC--CcHH-HHHHHHcc---CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCC
Q 003339 732 ANLAT-IPDGRVAIGQE--NGIP-VLVEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791 (828)
Q Consensus 732 anLa~-~~e~r~~i~~~--g~I~-~Lv~lL~s---~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~ 791 (828)
.+.+. +.+++..+... +.++ .+..++.. ........++.++.|+..+++..|..+...+.
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 99887 55556555442 2333 33333332 23344678999999999999877777665433
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.53 Score=40.32 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003339 684 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
.|.|++|+.|++..+.....+-+.++++.++++. .+-..++--|..+|..++...+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888877777889999999998 3456778889999999999999999887765
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.9 Score=51.98 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=133.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHH-HHHHHHHHHhhcC-CccH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ-ENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~-e~A~~aL~nLs~~-~~~k 619 (828)
+....|+++....+++.+..+...|. .+...+ +| ....++++.+.++.+...+. ..++.+|.||+.. +..|
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 44555666655555555555555554 222211 11 12466677776655432222 5688999999654 5567
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
..|...-+++.+-..+...++..+..++..+.||...+. +...+++. ...+....++.........+++.++..++..
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 778888778877777878888999999999999988665 46667774 6677777777777788888888888877665
Q ss_pred chh-HHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHH
Q 003339 698 HEN-KARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEV 756 (828)
Q Consensus 698 ~~n-~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~l 756 (828)
.+| +..+.+ ......++.++ +.+..+....+.+..|+.. ..+....+.....++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 443 343333 45556666666 6777888888777777443 22333444554555544443
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.6 Score=46.62 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc
Q 003339 723 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 723 v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~ 800 (828)
....|+.+|.-+|- |+..|..+.+...+..|+.+|. ...+.++-.+..+|..+...++.+...+-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567888888777 9999999999999999999995 467999999999999999999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHh
Q 003339 801 SG--TPRAKEKAQALLSYF 817 (828)
Q Consensus 801 ~g--~~r~r~kA~~lL~~L 817 (828)
+. +..+|-|..+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 87 467888888866644
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.1 Score=49.53 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCH----HHHHHHHHHHHHchhcchhHHH
Q 003339 628 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 628 l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~----~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
...+.+++.+|+...+..|...|.+|+.+......+....++..|..++.++.. .....++.++..|....-.-+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455678888999888888999999999988888888888889999999998753 5566666666666554444444
Q ss_pred HHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCch-hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 704 iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+...+|.....+. ..+..+...|+.+|.++..+.. -+..+.++-.+..|+..+...+..++..|.+.|-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 45555555555554 2334566789999999998666 4566677777999999999999999999888888776653
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=91.94 E-value=8.6 Score=38.66 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC-HHHHHHh
Q 003339 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA-IEPLIHV 634 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~-l~~Lv~l 634 (828)
++.++..++..+..|+..-+. +++ ..+|.+...|.++++.++..|+.+|..|...+--| -.|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 467888999999999885432 222 46889999999999999999999999986543222 1133 3778888
Q ss_pred hcCCCHHHHHHHHHHHHHhccC
Q 003339 635 LQTGSPEARENAAATLFSLSVI 656 (828)
Q Consensus 635 L~s~~~e~~~~Aa~aL~nLS~~ 656 (828)
|...+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9899999999999999988654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.93 E-value=6.5 Score=49.51 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=140.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc---C-Ccc
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI---N-DNN 618 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~---~-~~~ 618 (828)
.+..-++.++. .+.+..|+..|+.|+... .+++. .-++|.++.++.+..++|+..|+.+|..+-. + +..
T Consensus 426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKT--IQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhc--chhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34445555554 356788999999998742 22322 2579999999999999999999999887632 1 111
Q ss_pred HHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccC------------------c-chH--------HHHHhh-CCh
Q 003339 619 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI------------------E-DNK--------IKIGRS-GAI 669 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~------------------~-e~k--------~~I~~~-g~I 669 (828)
-..|.-.=.+|.|-+++.+.+ ..++..-|..|.-|+.. + ++. ...... ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 122222235666777776633 33444444444433321 0 000 000000 112
Q ss_pred H-HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhC
Q 003339 670 G-PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQE 747 (828)
Q Consensus 670 ~-~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~ 747 (828)
. ..+.||.+..+-+++.-+..|.-||..-.-.. ...=+++.|+.+| +.+..++-.-...+.-+|..-..| -+++
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~se 655 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSE 655 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHH
Confidence 2 22333334444455444445555544211000 1112445555555 333333322222222222211111 1234
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 748 g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+|.|.+-|..+.+.+...|..+|..||..+--....+. .+++-..-++.+.+.-+|+.+..++....++
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 4578888888888999999999999999886531111221 2344455566778888999988877665544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.7 Score=49.19 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc---cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSINDN---NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~---~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
.|...+.+|.+..+.++++|+.....|+.--. .-..+...|. .|.+-|....+++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 34556677888899999999988887753211 1122222222 244566666788877777777776553332211
Q ss_pred -HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC---
Q 003339 663 -IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--- 736 (828)
Q Consensus 663 -I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--- 736 (828)
---.|.+|.|...|++....+..+.+..+..+|.+.....-..+ -.+.--|+++| +-+.+++..|...+..++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 11248899999999999999999999988888875432111111 11122244444 3455666655554444432
Q ss_pred -------------CchhH---------HHHHhCC----cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCC
Q 003339 737 -------------IPDGR---------VAIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG 790 (828)
Q Consensus 737 -------------~~e~r---------~~i~~~g----~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g 790 (828)
..+-+ ..+.+.. ++|.|+.=-+..+..+|.....++..+...-++.....+ .-
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv-y~ 841 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV-YS 841 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 11111 1112222 233333333445566666555555554443222111111 22
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 791 AVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 791 ~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+.|.|-.-+.+.++.-|.-|..++++|.-..
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 4555666677777888888888888876543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.1 Score=43.11 Aligned_cols=76 Identities=13% Similarity=0.267 Sum_probs=62.8
Q ss_pred HHHHHHhCcHHHHHHhcC----------CChHHHHHHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHccCCHHHHHHHH
Q 003339 701 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL~----------~~~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av 769 (828)
...+++.|++..|+++|. .+......++.+|..|..+..|...+.. .+++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 457889999999999871 2235677899999999999999999887 56799999999999999999999
Q ss_pred HHHHHHh
Q 003339 770 AALLQLC 776 (828)
Q Consensus 770 ~~L~~L~ 776 (828)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.29 E-value=7 Score=49.26 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=138.0
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhh---ccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhh
Q 003339 538 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLA---KHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLS 613 (828)
Q Consensus 538 l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La---~~s~~nr~~i~~~GaI~~Lv~lL~s~d~-~v~e~A~~aL~nLs 613 (828)
.......+|.++.++..+...+|..|+..|..+. +.-+..-..|...=.+|.|-.++.+.++ .++..-+..|..|+
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 3456778999999999999999999888776543 2212222223333456677777766332 23322222233332
Q ss_pred c------------------C-CccHHHHH-----Hc----CCHHH-HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003339 614 I------------------N-DNNKSAIA-----NA----NAIEP-LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 614 ~------------------~-~~~k~~I~-----~~----g~l~~-Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
. + +++..... +. ..+.. ...+|....+.++..-+..|.-|+. .++
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFG 610 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFG 610 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH------Hhh
Confidence 1 1 11100100 00 12222 2334544455565555555555542 233
Q ss_pred hh----CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch
Q 003339 665 RS----GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 739 (828)
Q Consensus 665 ~~----g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e 739 (828)
+. -.++.|+..|.+.+...+-+=...|..+|..-.- +-++.+.+|.|..-| +.++.++..|++.|..|+...-
T Consensus 611 k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 611 KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 32 3578888888888777766555555555553332 226788899888877 7788899999999999998544
Q ss_pred hHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 740 GRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 740 ~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
-+. ++.+ .++...-+|-..+.-+|..++.++......
T Consensus 689 l~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 332 2332 345555567788999999999999988765
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.2 Score=40.26 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=48.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003339 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
..+++++..+.+.+.+++..|+.+|+|++..........-..+...|.+++ ++++.+ ..++..|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHH
Confidence 678999999999999999999999999986443322222356777788877 555554 4455666554
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.4 Score=44.94 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=56.0
Q ss_pred CcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 708 GAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 708 G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
.++..|+.+|+ .++.+..-|+.=|..++. +|.||..+-+.|+-..++++|.+.+++++.+|..++..+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 37788999983 334455567777888887 899999998889999999999999999999999999877643
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.1 Score=41.56 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
+..|=.|...=...++++|||..|+.| |=-+.-+.||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNC---FPGERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccc---cChhhccCCCCCCCcccCCC
Confidence 344666777777889999999999998 43334455999999987654
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.28 Score=38.57 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=32.4
Q ss_pred cccCccc--cccCCeecCCC-----cchhHHHHHHHHhcC-CCCCCCCC
Q 003339 241 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR 281 (828)
Q Consensus 241 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~~~~~-~~~cP~t~ 281 (828)
.|-||++ --.+|.+.||. +-+=+.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788885 56788888874 679999999999764 45799985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.058 Score=65.05 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=41.4
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCC-CCCCCCCcCCCCCC
Q 003339 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLF-VCPKTRQTLAHTTL 289 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~-~cP~t~~~l~~~~l 289 (828)
+.|+||.+ ..+||++.|||.||+.|+.+.+..... .||.|+..+.+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 899999999999999999999886433 59999877665433
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.6 Score=45.02 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=110.7
Q ss_pred CcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH---
Q 003339 585 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--- 660 (828)
Q Consensus 585 GaI~~Lv-~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k--- 660 (828)
+.+..|+ ..+.+.++.+++.|+.+|+-.+.-+. .+ ....++.+...++.++.+++..|+.+|+.+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---EL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 56778899999999999988875443 11 1234777888888889999999999999886532211
Q ss_pred ------HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHh-cC----CChHHHHHHHH
Q 003339 661 ------IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MD----PAAGMVDKAVA 729 (828)
Q Consensus 661 ------~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~L-L~----~~~~v~~~Al~ 729 (828)
........+..+.+.|.+.+++++..|+..++.|........ ...++..|+-+ ++ ++..++.--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 112234677888888998999999999999998866443322 13344444433 23 22344444445
Q ss_pred HHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003339 730 VLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 730 ~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+-..|......+..+...+++.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 566677755555566666778888777764
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.78 E-value=11 Score=45.74 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=137.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 003339 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 625 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~ 625 (828)
..|.++|.+.....+..|...|..+.....+. ...+|..|+-..+.+.++..-.---|...+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 46788888888888888887766554433221 235678888888888888876665565555543332221
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHH
Q 003339 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARI 704 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~i 704 (828)
-|..+-+-|+.++..+|..|+.+|..+= ..+..-=++-.+-+...+..+.+++.|+.||-.|=. .++.+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 3566778899999999999999988762 112111112223344456689999999999998855 44444433
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+..+-.|| +.++.++-.|+.+...+|- +.-..|. +-...|..++...++..|-.....|...|+.
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 33444456 5666677777777776663 3333332 3477888888888888888888888777764
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.07 Score=62.79 Aligned_cols=48 Identities=17% Similarity=0.381 Sum_probs=40.4
Q ss_pred cccccCccccccCCee---cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 239 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.=.||+|..-+.|-.+ .+|||.||..||..|-+.. .|||.|+..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhee
Confidence 3479999999999887 4799999999999998864 6899999877553
|
|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.16 Score=55.55 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=48.3
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
...+|.+++-.|.|||-+..|..||-..|--|++.. .+-|.||+++...+|++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 456899999999999999999999999999999974 67899999999999886
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=90.53 E-value=8.9 Score=41.96 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=109.8
Q ss_pred hhHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CC-cc
Q 003339 542 ETQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND-NN 618 (828)
Q Consensus 542 ~~~V~~Lv-~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~-~~ 618 (828)
.+.+..|| ..+++.++.+|..|+.+|..++--+.+. +. ..++.+...+..+++.++..|+.+|..+.. +. ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 45666665 7888999999999999999988865422 11 347778888877899999999999998853 21 11
Q ss_pred HH-------HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC----CHHHHHHH
Q 003339 619 KS-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDA 687 (828)
Q Consensus 619 k~-------~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~A 687 (828)
.. .......+..+.+.|.+.+++++..|+..++-|-....... ...++..|+-+--+. +++.+..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 12223567778889999999999999998888754322211 123344444433222 34444433
Q ss_pred HHHHHHchhcchhHHHHHHhCcHHHHHHhc
Q 003339 688 ATALFNLSIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 688 l~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
...+-..+..+...+..+....++.+..+.
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334556666666556677777777777766
|
|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.19 Score=55.16 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCcccccCccccccCCee-----c-CCCcchhHHHHHHHHhcCCC--CCCCCCCcCCCCCCC
Q 003339 237 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTTLI 290 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~~~~~~~--~cP~t~~~l~~~~l~ 290 (828)
|---.|.||-+.+ |+. + .|||+|.-.|+.+||+..+. +||.|+-.+......
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 3445699996654 443 3 49999999999999997554 699998555554433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.7 Score=50.84 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=33.9
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCC
Q 003339 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ 282 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 282 (828)
.-.|..|...+.=|+| -.|||.|-+.|.+ .+...||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3579999999999998 6899999999988 44567999954
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.99 E-value=3.5 Score=47.78 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCC----hHHHHHHHHHHHHHhCCchhHH
Q 003339 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPA----AGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 668 ~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~----~~v~~~Al~~LanLa~~~e~r~ 742 (828)
....+.+++.+++...+..|+..|..|+.+......++...++..|..++ +.+ ..+...++.++..+-.+.-.--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35677888899998889899999999999999999999999999999998 322 3344455555554443322111
Q ss_pred HHHhCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 743 AIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~--s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
......+|.....+.. .....+-..|...|-++..++....+.+.++--++.|+..++.++.++...|..++..|..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1122334444445442 2345667788999999988888778888899999999999999999999999998886654
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.083 Score=55.12 Aligned_cols=55 Identities=18% Similarity=0.421 Sum_probs=44.2
Q ss_pred CcccccCccccccCCe----------ecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCc
Q 003339 238 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN 292 (828)
++=.|.+|+.-+-+-| .++|+|.|---||.-|.--| ..|||-|++.+....+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4567999997776666 58999999999999998755 4689999988776655544
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.27 Score=38.35 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=22.0
Q ss_pred ccCccccc--cCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 242 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 242 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
||+|.+-| +|=-.. +||+.+||-|-.+-...++..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 222233 57999999998888876667899999875
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=5.3 Score=51.39 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=127.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH-HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh-hc-CCccH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV-IANCGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~-i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~-~~~~k 619 (828)
.....|...+.+.++..+..++.-|..+.+.-...+.. .........+..+|...|+-+|..|..-|.-. .. +...|
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 34456677777999998876554444443321112211 11124447888899888888998888776432 11 22223
Q ss_pred HHHHHcCCHHHHHHhhcCCCHH-------H---------------HHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPE-------A---------------RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e-------~---------------~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~ 677 (828)
.- .+..|+.-|-.|... . ....-.=|+||+. .+++...+...++|-+
T Consensus 898 ~~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 898 KS-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhh
Confidence 33 334455444333211 0 1111122233322 1223345566666666
Q ss_pred CC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCCcHHHHH
Q 003339 678 NG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLV 754 (828)
Q Consensus 678 s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g~I~~Lv 754 (828)
++ .-..++-|+.-+..|+....-+.+-.-...||.|.+.= +++..++.....++..|...+... .... ......|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence 65 33455555555555554433222222345677777764 888888887777777777653332 2222 23566666
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 755 EVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.-+.+...++||.+|.+|..|-.+.+
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCC
Confidence 66777889999999999999998754
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=89.60 E-value=5.8 Score=48.53 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=139.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHH-hhCChHH
Q 003339 595 HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGP 671 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~ 671 (828)
.++.|.+.-.|.+++...+.. ..+...+- -.+...+..+. +...-++..|+.+++..+... ...- ..+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHH
Confidence 345666666777777765432 12221111 12223333332 334556777777777665211 1111 1377888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003339 672 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 672 Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
|.++....+.++...-..+|...+..+.-.....+.-+.|..+.++ .+++-++..+-.++..|+....+..-+. ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HH
Confidence 8888888888888888889998888777777778888888888876 4666777777777777776443333332 34
Q ss_pred cHHHHHHHHccCC----HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 003339 749 GIPVLVEVVELGS----ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 749 ~I~~Lv~lL~s~s----~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~L-L~~g~~r~r~kA~~lL~~L~~ 819 (828)
.||.|+..|.... .....-|+.+|-.+.++.+.-....+-.-++|++.+. +.+++..+-..|.++|+.+-.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 6999999997654 5666777788877877765322222223356777775 445567788889999987644
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.27 Score=52.20 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=40.5
Q ss_pred cccCcc-ccccCCee----cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003339 241 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 241 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.||+|. +.+..|-+ -+|||+.|-+|.-+-|..|...||.|+..|....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499998 66677753 38999999999999999998889999998876443
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=89.48 E-value=5 Score=42.99 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcchH
Q 003339 587 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 587 I~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g--~l~~Lv~lL~s----~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
+..+...+....++-+--++-.+.-+..++..-..+...+ ....+..++.. .....+.-++.++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3455555555544445556666655566655544444332 24444554433 35778888999999998888888
Q ss_pred HHHHhh-C-ChHHHHHhhcCC----CHHHHHHHHHHHHHchhcch-hH-HHHHHhCcHHHHHHhc---CCChHHHHHHHH
Q 003339 661 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYHE-NK-ARIVQAGAVKHLVDLM---DPAAGMVDKAVA 729 (828)
Q Consensus 661 ~~I~~~-g-~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~-n~-~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~ 729 (828)
..+... + .+-..+..+... +..++..++++++|++..-- .+ ..-....++..+++.+ ..+.+..-+++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 777665 4 455555555444 67888999999999987321 11 1112233556666633 267889999999
Q ss_pred HHHHHhCCchhHHHHHhC-CcHHHHHHHH-ccCCHHHHHHHH
Q 003339 730 VLANLATIPDGRVAIGQE-NGIPVLVEVV-ELGSARGKENAA 769 (828)
Q Consensus 730 ~LanLa~~~e~r~~i~~~-g~I~~Lv~lL-~s~s~~~ke~Av 769 (828)
+|++|...+......... ++-..+.... ....+++++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 999999877777766664 3333333333 345677776554
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=89.24 E-value=6.6 Score=44.86 Aligned_cols=130 Identities=19% Similarity=0.146 Sum_probs=94.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCcc----hHHHHHhhCChHHHHHhhcCC-------CHHHHHHHHHHHHHchhcc
Q 003339 630 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 630 ~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~s~-------~~~~~~~Al~aL~nLs~~~ 698 (828)
-+..+++..+++-+-.|+-....+...++ +|..+.+.-+++.+-+||.+. +.-.+..++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35556666666666666666666665443 577788886688898998754 2345667777888888887
Q ss_pred hhHHHHHHhCcHHHHHHhc----CCC----hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003339 699 ENKARIVQAGAVKHLVDLM----DPA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL----~~~----~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
+-...----..||.|++++ +++ ..+++.+-..|..++.++.|...++..|+++.+.++-.-
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 7543322345789999988 222 237899999999999999999999999999999876543
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.24 Score=54.75 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCcccccCccccccCCe-----e---cCCCcchhHHHHHHHHhcCC------CCCCCCCCcCC
Q 003339 237 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA 285 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~~~~~~------~~cP~t~~~l~ 285 (828)
-.+..|-||++.-.+++ . .+|-|+||-.||.+|-.... ..||+||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999999999998 3 45999999999999984332 56999997643
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=89.10 E-value=16 Score=36.68 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCC-hHHHHHhh
Q 003339 598 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA-IGPLVDLL 676 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~-I~~Lv~LL 676 (828)
++.++.+++.+|+.|+..-.+ ++ ...++.+...|+++++.+|..|+.+|..|...+-.|. .|- +..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 577889999999988753221 11 2458889999999999999999999999976433221 233 37788888
Q ss_pred cCCCHHHHHHHHHHHHHchhc
Q 003339 677 GNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~ 697 (828)
.+.+++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=89.07 E-value=3.2 Score=41.72 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=78.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC---------CCHHHHHHHHHHHHHh
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL 612 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s---------~d~~v~e~A~~aL~nL 612 (828)
.....+++.+++..... ..+..|+..-+.. ..--..+.+.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677888887665432 4555555433333 2334556678999999998853 3567888999999888
Q ss_pred hcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 003339 613 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS 654 (828)
Q Consensus 613 s~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS 654 (828)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 877777777765 589999999999999999999999888765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.23 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=28.3
Q ss_pred ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 254 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 254 ~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++||.|.|-|.|+++|.+.-.-.||+||++|..
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 469999999999999999654579999999864
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=88.99 E-value=42 Score=41.74 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=118.5
Q ss_pred hHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc----CCC----HHHHHHHHHHH
Q 003339 543 TQVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTAL 609 (828)
Q Consensus 543 ~~V~~Lv~~L~s-----~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~----s~d----~~v~e~A~~aL 609 (828)
+.+..|+..+.+ +..+.-...+..|+..++ -..||..+.+.|+++.|+..|. .+. +.+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 345556666553 222333345555556666 5789999999999999999874 333 56667766666
Q ss_pred HHhhcCCccHHH-----HH--------HcCCHHHHHHhhcCC----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHH
Q 003339 610 LNLSINDNNKSA-----IA--------NANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 672 (828)
Q Consensus 610 ~nLs~~~~~k~~-----I~--------~~g~l~~Lv~lL~s~----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L 672 (828)
..|......... .. ....+..|+..+.+. +..+....+.+|-+|+..+..+....-.- +.+.
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F~p~ 274 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-FKPY 274 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHHh
Confidence 555322111000 01 112366677777654 47788888999999988655443332211 1222
Q ss_pred HHhhc--CC-CHHHHHHHHHHHHHchh----c---chhHHHHHHhCcHHHHHHhc-C--C------ChHH--------HH
Q 003339 673 VDLLG--NG-TPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLM-D--P------AAGM--------VD 725 (828)
Q Consensus 673 v~LL~--s~-~~~~~~~Al~aL~nLs~----~---~~n~~~iv~~G~V~~Ll~LL-~--~------~~~v--------~~ 725 (828)
+++=+ .. ..+- ...+.+++.++. + ..-|..+++.|++...++.| . + +++. ..
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 22211 11 1111 122444444443 1 23557788999999888876 1 1 1222 34
Q ss_pred HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003339 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.++.+|.-||......+.+...+++ .++..|+.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 5788888888855544444555666 44455543
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=88.97 E-value=11 Score=42.87 Aligned_cols=216 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-C---CCHHHHHHHHHHHHHhhcCCccHH
Q 003339 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 545 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s---~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+..+++.-..-.+.+-..|+..+..+....|..-..+.++|.++.++..+. . ...++....-.+|.-|+.+..+.+
T Consensus 111 L~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~ 190 (379)
T PF06025_consen 111 LKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLE 190 (379)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHH
Confidence 444444444445677788999999999999999999999999999999887 4 356666666677777889999999
Q ss_pred HHHHcCCHHHHHHhhcCCCH-H-HHH-HHHHHH----HHhcc-CcchHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHH
Q 003339 621 AIANANAIEPLIHVLQTGSP-E-ARE-NAAATL----FSLSV-IEDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~-e-~~~-~Aa~aL----~nLS~-~~e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
.+.+.+.++.+++++.+..- . .+. ..+..| -.|.. ++..|..+.+. ..+..++.+-+......-..+-..
T Consensus 191 ~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~ 270 (379)
T PF06025_consen 191 KVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLW 270 (379)
T ss_pred HHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 99999999999999977541 1 111 233333 33444 23445555443 444444444333221110000000
Q ss_pred H-------------HHchhcchhHHHHHHhC-cHHHHHH-hcC-------------------CChHHHHHHHHHHHHHhC
Q 003339 691 L-------------FNLSIYHENKARIVQAG-AVKHLVD-LMD-------------------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 691 L-------------~nLs~~~~n~~~iv~~G-~V~~Ll~-LL~-------------------~~~~v~~~Al~~LanLa~ 736 (828)
. .+.....+. ......+ .+..... -.+ .-...+...+..|..+-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fs 349 (379)
T PF06025_consen 271 TEDSQGKPVVSGESSAVSTDEEM-EEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFS 349 (379)
T ss_pred ccccCCCCCCCCCcccccccccc-ccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcC
Confidence 0 000000000 0000000 0000000 000 001345788888888889
Q ss_pred CchhHHHHHhCCcHHHHHHHHccCC
Q 003339 737 IPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 737 ~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
+.+.+..+++.||+..|++++..++
T Consensus 350 N~~~C~~FVe~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 350 NSDHCREFVEKGGIELLLDLLTLPS 374 (379)
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 9999999999999999999987643
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.28 Score=52.31 Aligned_cols=42 Identities=33% Similarity=0.679 Sum_probs=36.4
Q ss_pred ccccCccccccC---CeecCCCcchhHHHHHHHHhcCC--CCCCCCC
Q 003339 240 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTR 281 (828)
Q Consensus 240 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~ 281 (828)
|.||+..+.-+| ||++.|||..-+.++.+--++|. ..||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899999998876 89999999999999988877764 3599994
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=88.20 E-value=4.4 Score=43.23 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHhhcC
Q 003339 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQT 637 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs-~~~~~k~~I~~~g~l~~Lv~lL~s 637 (828)
...|+..|.-++--.+..|..+.+...+..|+.+|.. ..+.++..++.+|..+- .++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4567788888887788999999999999999999954 57889999999887764 557899999999999999999987
Q ss_pred CC--HHHHHHHHHHHHH
Q 003339 638 GS--PEARENAAATLFS 652 (828)
Q Consensus 638 ~~--~e~~~~Aa~aL~n 652 (828)
.. .+++...+..|+-
T Consensus 188 ~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccHHHhHHHHHHHHH
Confidence 63 6676666666553
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.18 E-value=11 Score=40.16 Aligned_cols=195 Identities=25% Similarity=0.262 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--
Q 003339 542 ETQVRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~-- 617 (828)
+..|+.|+..|. +..+-++..|..+|..+.. . +..+.|-+..+.+...+.+....++..+-+-..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 456888888887 4456677788888877652 1 345566666655566666666666655532110
Q ss_pred ---cHHHH--------HHcCCHHHHHHhhcCCC-H-HHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHH
Q 003339 618 ---NKSAI--------ANANAIEPLIHVLQTGS-P-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 684 (828)
Q Consensus 618 ---~k~~I--------~~~g~l~~Lv~lL~s~~-~-e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~ 684 (828)
+.... ...+-+..|-..|...+ . .-+..|+-.|.|+ +...+|..|++=+..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence 00000 01122344443333332 2 2233333333332 223457777777777777788
Q ss_pred HHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC
Q 003339 685 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 685 ~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
..++.++..| ...-.|+.|.+.| + ..+-++..|+.+|..++. ...++.|.+++....
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 8888887665 4455788888877 2 345566788888887653 456888888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 003339 762 ARGKENAAAALLQLCT 777 (828)
Q Consensus 762 ~~~ke~Av~~L~~L~~ 777 (828)
+-+++.|..+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765543
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.12 Score=43.81 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=23.5
Q ss_pred cccccCcccccc----CCeec----CCCcchhHHHHHHHHhc--CC--------CCCCCCCCcCCC
Q 003339 239 DFCCPLSLELMT----DPVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~----dPV~~----~~G~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~~ 286 (828)
+..|+||..... .|+++ .||++|=..|+.+||.. +. .+||.|+++++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998654 25553 58999999999999974 11 249999988753
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=87.66 E-value=31 Score=40.93 Aligned_cols=131 Identities=22% Similarity=0.313 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I 622 (828)
.-..++...+ ++...+.-|+..|..+.+.-++-.. .+|..++.++..+|..++..|+..|-.++.+ ++....+
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 3455555555 5678899999999999998776544 4788999999999999999999999999876 3344443
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc---CCCHHHHHHHHHHHH
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF 692 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---s~~~~~~~~Al~aL~ 692 (828)
.+.|+++|.+.+..-...+-.+|..|-..+ ..+.+..|..-+. +++..++..++..|.
T Consensus 98 -----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 -----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 567889998877543333333333332111 1244455555444 456667777776664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.11 E-value=43 Score=38.62 Aligned_cols=185 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHcCCHHHHHHhhcCCC-------HHHHHHHHHHHHHhccCcch
Q 003339 591 VDMLHSSETKIQENAVTALLNLSIN----DNNKSAIANANAIEPLIHVLQTGS-------PEARENAAATLFSLSVIEDN 659 (828)
Q Consensus 591 v~lL~s~d~~v~e~A~~aL~nLs~~----~~~k~~I~~~g~l~~Lv~lL~s~~-------~e~~~~Aa~aL~nLS~~~e~ 659 (828)
..++...+..-+-.|+-....+..+ ..+|..+.++-|++-+=++|.+++ ...+..+..+|.-.+..++.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 3444444444444444445555544 346888888877777777776542 34566777778777777664
Q ss_pred HHHHHhhCChHHHHHhhcCC-CH------HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHH
Q 003339 660 KIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAV 730 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s~-~~------~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~ 730 (828)
...---...||.|..++..+ ++ ....++-.+|..++..+.....++..|+++.+.++- .....-...++.+
T Consensus 97 Ash~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~V 176 (698)
T KOG2611|consen 97 ASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKV 176 (698)
T ss_pred ccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHH
Confidence 32211125688898888654 22 377899999999999999999999999999999864 2222222334444
Q ss_pred HHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 731 LANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 731 LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+..+.. .++.-..+.. .|..+..=+...+...+-..+.+|..+-.
T Consensus 177 lll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 177 LLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 433332 2222222222 14444443444556677777777765443
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.06 E-value=15 Score=45.25 Aligned_cols=218 Identities=18% Similarity=0.204 Sum_probs=129.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHHH
Q 003339 545 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSA 621 (828)
Q Consensus 545 V~~Lv~~L-~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~~k~~ 621 (828)
...+.+.+ +...+.++..++..+..+++.-+. .....+.++.++.++..+...+++.|...+.++... ...
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--- 311 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--- 311 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---
Confidence 33444443 456788888899999998885433 566679999999999988888999999988887432 221
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh--cch
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHE 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~--~~~ 699 (828)
=...-..+.++...+.++...+...+...+.|+..-+. ..+...-+++...+++....+++..++.-...++. +.+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 12234678888999999988888888888777542111 22233456777777777666666666655554444 333
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
....+....+++.+-.+. +.+..+....+.....+...-. +..-+ ....|.+...++...+.++.+-...+
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHH
Confidence 444555555667666665 4444444433333333322100 00000 11234444445555555555555443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.03 E-value=12 Score=44.53 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=101.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh---cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 003339 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 624 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~---~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~ 624 (828)
.+..+..-.++++.-|+..||.+.++...+-..+-. +..+..|+..+. .++..+.-++++|.|+-.++.++..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 444455667888999999999999976655544432 235555555554 5677788899999999888778877775
Q ss_pred c--CCHHHHHHhhcCC-CHHHHHHHHHHHHHhcc--CcchHHHHHhhCChHHHHHhhcCC-----CHHHHHHHHHHHHHc
Q 003339 625 A--NAIEPLIHVLQTG-SPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNG-----TPRGKKDAATALFNL 694 (828)
Q Consensus 625 ~--g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~s~-----~~~~~~~Al~aL~nL 694 (828)
. -.+.+++. .++. +..++...+....|++. ...+-+ .+..+.|..++... +-+.....+.||.+|
T Consensus 628 ~~~~i~~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 628 RLESILDPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHhhhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 4 12222222 2233 34566555555566653 211111 34444444444321 335666777889999
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc
Q 003339 695 SIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
+..+.+..++...--|..+++-+
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHH
Confidence 98888888877766666666655
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=86.67 E-value=1.1 Score=44.23 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=91.2
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHH-
Q 003339 628 IEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKAR- 703 (828)
Q Consensus 628 l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~- 703 (828)
++.++..|.. ...++|..++-++..+- +..+... ..-+-+.+-.++..+..+....++.++..|-. .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4445554443 45667777777777662 2233332 22233444444555545567777777777755 3444444
Q ss_pred HHHhCcHHHHHHhcC---CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHH-HHHHHHHHHH
Q 003339 704 IVQAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSAR-GKENAAAALL 773 (828)
Q Consensus 704 iv~~G~V~~Ll~LL~---~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~-~ke~Av~~L~ 773 (828)
+...|.++.++.++. .+..+...++.+|..-|.....|..|.+ .+++.|-++++ +.++. +|..|+.+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 446899999999884 4566777888888888888888887776 46899999995 45566 6888877765
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.58 E-value=11 Score=46.55 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=151.5
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCC---
Q 003339 564 TAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGS--- 639 (828)
Q Consensus 564 l~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~--- 639 (828)
..+|..|-+.+.+|...+.++.++..++.++-+ .+-+...+.++..|-. ++.. +....+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 456777888899999999999888888888833 3333444444444422 2221 11223456677777642
Q ss_pred ---------HHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHHc-----
Q 003339 640 ---------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL----- 694 (828)
Q Consensus 640 ---------~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s----------~~~~~~~~Al~aL~nL----- 694 (828)
.......++++|.+.. +...+..+++.+++..|..+|.. ++.-+-..-...|+.+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1245566788887764 45567778888888888777632 1222222222233332
Q ss_pred hhcchhHHHHH-------------HhC---------cHHHHHHhc-C--CChHHH--HHHHHHHHHHh------CCc---
Q 003339 695 SIYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLA------TIP--- 738 (828)
Q Consensus 695 s~~~~n~~~iv-------------~~G---------~V~~Ll~LL-~--~~~~v~--~~Al~~LanLa------~~~--- 738 (828)
|.+..|+.++- +.| +|..|.++- + .-+.+. ..|++-+..+- ..|
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33555654432 223 223333221 0 001111 12222222221 122
Q ss_pred --hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc---CCCHHHHHHHHHH
Q 003339 739 --DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQAL 813 (828)
Q Consensus 739 --e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~---~g~~r~r~kA~~l 813 (828)
..++.|.+.|++..|+..+....++.+..-...|-.+++.++.........|.+..|++++. +|++..--.|..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 23577888999999999998899999999999999999999888888888899999888765 4555555566666
Q ss_pred HHHhhccc
Q 003339 814 LSYFRNQR 821 (828)
Q Consensus 814 L~~L~~~~ 821 (828)
+.+|...+
T Consensus 977 vemLgayr 984 (2799)
T KOG1788|consen 977 VEMLGAYR 984 (2799)
T ss_pred HHHHhhcc
Confidence 66665544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.37 E-value=32 Score=41.72 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHh--------
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNL-------- 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nL-------- 612 (828)
+..+|.+...|...+..+++.|.-++..+-+... ..+ .++-+.+-.+|.. .|+....+|...|...
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y 207 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY 207 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH
Confidence 4567888888999999999999988887766321 111 1344444445533 3555555554433221
Q ss_pred ----h-----cCCccHHHHHH-------------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChH
Q 003339 613 ----S-----INDNNKSAIAN-------------ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIG 670 (828)
Q Consensus 613 ----s-----~~~~~k~~I~~-------------~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~ 670 (828)
. .++.-+..|++ +..|..+..+|.+.+..++..|+++|.+|+.++..-. .+..
T Consensus 208 l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-----~Aa~ 282 (948)
T KOG1058|consen 208 LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-----AAAS 282 (948)
T ss_pred HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-----HHHH
Confidence 0 01111111111 1245555566666666666666666666654433211 1112
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc
Q 003339 671 PLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 738 (828)
Q Consensus 671 ~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~ 738 (828)
.+++++... +-.++...+--|..|. .+... +-.|.+--++.+| .++-+++.+++.+..-|+++.
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~---~~~~~-il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELK---ALHEK-ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHh---hhhHH-HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 223332211 1112221122222221 11111 1123333445555 467788888888777776643
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.81 E-value=91 Score=37.75 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=113.2
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc-CCCHH
Q 003339 563 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE 641 (828)
Q Consensus 563 Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~-s~~~e 641 (828)
.+.+.-+|+.+-+.....+. .++..|.++|.+....++.-|+..+..|+..+.....+-.. .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 44455556655444444444 36788888888888888888888888887776555555544 788899998 56788
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh--------cchhHHH-------HHH
Q 003339 642 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--------YHENKAR-------IVQ 706 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~--------~~~n~~~-------iv~ 706 (828)
++..|+..|..++... |...| +..|++.|.+-+..++++-+.=+.-|+. +-+...+ .++
T Consensus 385 irrravDLLY~mcD~~-Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVS-NAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhchh-hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 9999999999887543 43334 4567777777666665544443333332 1111122 234
Q ss_pred hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCc
Q 003339 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 749 (828)
Q Consensus 707 ~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~ 749 (828)
.++...++++.-.++++...|+..+......+..-+.|+..|+
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 5666777777766677777777666655555555555555443
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=85.70 E-value=0.57 Score=50.45 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcccccCccccccC--Cee--cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 238 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 238 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
+|+ ||+|.+-|.- --. -+||+..||-|-...-+.-+..||.||...+...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 9999998853 222 4689999999855443433457999998887753
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.57 E-value=56 Score=35.05 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=46.9
Q ss_pred CcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 748 NGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 748 g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
-.|+.|.+.|.. .++-+|..|+.+|..++.. ..++.|.+++....+-+++-+.-.|.++-
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 358899888864 6789999999999988753 35677788888888888888877777654
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.46 E-value=17 Score=44.60 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=124.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHH
Q 003339 592 DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGP 671 (828)
Q Consensus 592 ~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~ 671 (828)
..+.++-+.++..|++.|..+.........+...+.+...+..|++.+..+-.+|...+..|+.. .....++.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 34444556678888888888876655566677778999999999998888877888766666543 23355666
Q ss_pred HHHh-hcCC---CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH--HH
Q 003339 672 LVDL-LGNG---TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR--VA 743 (828)
Q Consensus 672 Lv~L-L~s~---~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r--~~ 743 (828)
|.+. .... .++-+...-.++.++... .+-..+.. +-.+...+..+ +++...+.-++++|++||.-..++ ..
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 6663 3222 122333333566665441 12111111 13333344444 566667888899999998733321 22
Q ss_pred HHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC---CCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 003339 744 IGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQE---GAVPPLVALSQSG-TPRAKEKAQALLS 815 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~---g~v~~L~~LL~~g-~~r~r~kA~~lL~ 815 (828)
+. ..+..++.+.+ +++.-+|..|+-++..+-.+.+...-.+.++ .....+..+.... ++.+|-.|...|.
T Consensus 886 ~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 886 FH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22 23455555555 4788999999999988877665433333322 2233334443333 3445555544333
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=8.8 Score=47.07 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=114.7
Q ss_pred HHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH--HHHHhhcCCCH-H
Q 003339 566 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGSP-E 641 (828)
Q Consensus 566 ~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~--~Lv~lL~s~~~-e 641 (828)
.|...+..+++++..+.+.|++..+...+.. +..+++..++..|.|++.....+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999986 567799999999999987654444433222222 33335555444 7
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH-HHHhc--C
Q 003339 642 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D 718 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~-Ll~LL--~ 718 (828)
.-.+|+.+|..+..+.+. ....+.-+..-+++. .++........++.-...+.. +..++ .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~--------------e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLV--------------EAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHH--------------HHhhccCccceeehhhhhcchhHHHHhccc
Confidence 778888888887654332 111122222222211 111112222222222222222 44444 3
Q ss_pred CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 003339 719 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 772 (828)
Q Consensus 719 ~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L 772 (828)
.....+--|++++.+++. +++....+.+.++++.+.++-.. ....+++.+..++
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 445567788888888888 66667777778887777665432 2444555555444
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.3 Score=50.36 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhcCCccHHH-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-----Ccc---hHHHHHhhCChHH
Q 003339 601 IQENAVTALLNLSINDNNKSA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-----IED---NKIKIGRSGAIGP 671 (828)
Q Consensus 601 v~e~A~~aL~nLs~~~~~k~~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-----~~e---~k~~I~~~g~I~~ 671 (828)
+...|.+++..+..++..+.. +.-..+...++..|.+.....++.+++++.|++. .+. ....+... .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHH
Confidence 445667777666666554332 2334566667777766667788999999998863 111 12222111 1222
Q ss_pred HHHhh---cCCCHHHHHHHHHHHHHchhcch----hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH
Q 003339 672 LVDLL---GNGTPRGKKDAATALFNLSIYHE----NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 672 Lv~LL---~s~~~~~~~~Al~aL~nLs~~~~----n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
+..+- .-...+++.+|..+|.|+...-+ .....+..|.+..++.-. .....++.+|+.++.||-.++.-.-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22221 12357899999999999977332 112223344444444422 4556788999999999999876532
Q ss_pred HHH--hCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhC
Q 003339 743 AIG--QENGIPVLVEVVEL-GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 743 ~i~--~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~ 778 (828)
+-. ...+.+.|..++.+ .+=++|-+|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 222 22347888888865 6778899999988776653
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=85.06 E-value=19 Score=41.31 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCcc
Q 003339 541 IETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
....+..++....+. ++..+..++..+..|.-.-+..- .+ ..++..+...+ ...+...+..++.++.-++
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~----- 258 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT----- 258 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----
Confidence 345778888886643 56677778888887765421111 11 12334444434 2333444444444443332
Q ss_pred HHHHHH-----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cch--------HHHHHhh----CChHHHHHhhcCCC
Q 003339 619 KSAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGT 680 (828)
Q Consensus 619 k~~I~~-----~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~--------k~~I~~~----g~I~~Lv~LL~s~~ 680 (828)
|..++. ...+..|+.+|.+ .++...|+..+.-|..+ ++. -+.+.+. ..+|.|++-.+..+
T Consensus 259 KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 259 KALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred HHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC
Confidence 222222 1346678888866 56677778777777655 221 1222222 45677777777777
Q ss_pred HHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCc
Q 003339 681 PRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP 738 (828)
Q Consensus 681 ~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~~~ 738 (828)
...+...+.||.+|..+-.....+-+ ..++|.|++-|+ ++..+...++.+|..+....
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77888889999999885553333333 558888888884 66778889999999888754
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.73 E-value=0.47 Score=57.31 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=34.2
Q ss_pred cccCcccccc--C---Ceec--CCCcchhHHHHHHHHhc-CCCCCCCCCCcCC
Q 003339 241 CCPLSLELMT--D---PVIV--ASGQTYERAFIKKWIDL-GLFVCPKTRQTLA 285 (828)
Q Consensus 241 ~CpI~~~lm~--d---PV~~--~~G~ty~r~~I~~~~~~-~~~~cP~t~~~l~ 285 (828)
-|+||.-+.. | |=-. .|.|.|--+|+-+|+.. ++.+||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998864 3 3222 36789999999999986 4567999996554
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.58 E-value=0.57 Score=54.47 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=40.1
Q ss_pred CcccccCccccc----cCCeecCCCcchhHHHHHHHHhcCCCCCC--CCCCc--CCCCCCCCcHHHHHHH
Q 003339 238 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCP--KTRQT--LAHTTLIPNYTVKALI 299 (828)
Q Consensus 238 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~~~~~~~~cP--~t~~~--l~~~~l~pN~~l~~~i 299 (828)
+-++|+||..+| ..||.+-||||.|+.|.+.-... +|| .-.-. ...+...-|++|-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence 457899997666 57999999999999999987654 577 22111 1223444567665554
|
|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.16 E-value=0.84 Score=46.99 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=47.8
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCCcHHH--HHHHHHHH
Q 003339 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANWC 303 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l--~~~i~~~~ 303 (828)
+.+|||+..-..-|++ ..|.|.|||..|.++++-. ...||. |-+.+..+.++-.+.| |..|...+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 4689999999999987 5799999999999999843 234886 5566777777655444 44444443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.07 E-value=87 Score=41.08 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=123.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccH
Q 003339 544 QVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNL-SINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k 619 (828)
.|=++.++-+ +..+.-+.-|+.-+..+++.. +..+... -.||.|.+.-.+++..+|. |.+-++|. ..+..+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKV 1032 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHH
Confidence 3334444443 224445566777777777633 3333332 5788888888888888875 44445554 3333222
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHH---HHHHHHch
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDA---ATALFNLS 695 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~A---l~aL~nLs 695 (828)
..-.-...+.-|+.-|.+....+|+.++.+|..|-...+.-...-.. ..+..+.+.+.+=...++++| +.+|..|+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223456777777777778899999999999997754433222222 556666666655445555544 44555554
Q ss_pred h-----cchhHHHHHHhCcHHHHHH--hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCH
Q 003339 696 I-----YHENKARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 762 (828)
Q Consensus 696 ~-----~~~n~~~iv~~G~V~~Ll~--LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~ 762 (828)
. .+..+.+-+-.-++|.|+. +++.-.+++.-++.++.-|+.+..+.-.-.-...||.|++....-++
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 4 2223333333445555554 33444678888999999998865442111112346666666554433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.2 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 750 IPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|.+++++.+.++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.7 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSI 614 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~ 614 (828)
.+|.+++++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.48 E-value=24 Score=43.83 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH---HHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAI---NILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI---~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+.+.|-..+.+.++..+.+|+..+........ .....|.. -.++..... .+..+.-.|+.+|.-++..-...
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44566777778889999999999987766332 22233333 333433332 45666677777777776431111
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH 698 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~ 698 (828)
..=...+.++.|+.-+......++..+..++-.... .......++.+...+++++++.+..+...+..... ..
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 112234678888888887777777766666554432 11123567888888999999999887777665544 22
Q ss_pred -hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 699 -ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 699 -~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
.+...-.-.++++.++... +.+.+++..|+.+++.+-.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2333333456667777766 6778888888877766544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.36 E-value=27 Score=41.64 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=105.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh
Q 003339 591 VDMLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666 (828)
Q Consensus 591 v~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~----~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~ 666 (828)
+..+.....+++.-|+-+|.-+..+...-..+.. ...+..++..+. +.+.-+..++++|.|+-.+...+..+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344455677778888888777666554444433 235666666665 56777888999999998776666665543
Q ss_pred --CChHHHHHhhcCC-CHHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhc----CC--ChHHHHHHHHHHHHHh
Q 003339 667 --GAIGPLVDLLGNG-TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DP--AAGMVDKAVAVLANLA 735 (828)
Q Consensus 667 --g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL----~~--~~~v~~~Al~~LanLa 735 (828)
..+..++.. +.. +..++.+-++...|++. ..++-+ .|..+.|..++ ++ +-+..-+.+.+|.+|+
T Consensus 629 ~~~i~~~~~~~-~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 LESILDPVIEA-SSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHhhhhhhh-hcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 222222222 233 34555555555666654 222211 45555555543 32 2234456788899999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHH
Q 003339 736 TIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAA 770 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~ 770 (828)
..+.....+...-.+..+++.+++ .+.....+.+.
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 998888888887778888888875 34333333333
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=10 Score=46.35 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=108.7
Q ss_pred hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHH
Q 003339 635 LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714 (828)
Q Consensus 635 L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll 714 (828)
+.++-..++.+++..|..+....+.+..+...+++....++|++.++-+--+|...+..||.. ....++|.|.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~ 808 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLS 808 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHH
Confidence 334445577788888888887666677777789999999999999988888888877777762 2234556666
Q ss_pred H-hcC----CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003339 715 D-LMD----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 715 ~-LL~----~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
+ ..+ ...+.+-....++.+++. -.+-..... +-.+...+..+++++..-|..+++++.+||..........+-
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 6 331 112233333344444432 111111111 123556666667666677899999999999754322222221
Q ss_pred CCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003339 789 EGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 789 ~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
.++..++.+.+.+ ..-+|+.|+.++..+-.
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2344555555544 56788999888876654
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.11 E-value=1.1e+02 Score=36.35 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003339 544 QVRKLVEDLKSTS----LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~----~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...+|++.+.... .-....-++.+..|.+.++..+..+ .|.|-.-|++...-++-+++.++..++...-.
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~- 297 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG- 297 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-
Confidence 4566777776543 1111223455556666666555554 45666666666677888888888887643211
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE 657 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~ 657 (828)
..++ ...+..|-.+|++.....|-.|+.+|..|+...
T Consensus 298 ~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 298 SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 1111 134666777888888899999999999998643
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=12 Score=45.98 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=120.8
Q ss_pred HHHHhhcC-CccHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhCChH--HHHHhhcCCCH-H
Q 003339 608 ALLNLSIN-DNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIG--PLVDLLGNGTP-R 682 (828)
Q Consensus 608 aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~--~Lv~LL~s~~~-~ 682 (828)
+|.++..+ +.+...+.+.|++..+.+.++.- ..+.+..+.+.+.+++...+++........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 66677544 66788899999999999999864 57789999999999998766554443322222 33334444333 6
Q ss_pred HHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHH-HHhCCchhHHHHHhCCcHHH-HHHHHc-c
Q 003339 683 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA-NLATIPDGRVAIGQENGIPV-LVEVVE-L 759 (828)
Q Consensus 683 ~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~La-nLa~~~e~r~~i~~~g~I~~-Lv~lL~-s 759 (828)
.-..|+..|+.+..+.+. ....+. .+.+...+. .+.........+.....+.. +..++. +
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~--------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF--------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc--------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 677777777777665443 111111 112221111 12222222222222222222 555554 4
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 003339 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYF 817 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L 817 (828)
..+..+..|++++.+++...++++..+.+.|+++.+..+-... ...++..+..++...
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 7889999999999999999999999999999999988875544 345566666555443
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=82.80 E-value=6.3 Score=33.80 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCC
Q 003339 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEG 790 (828)
Q Consensus 724 ~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g 790 (828)
...|+++++++++.+.|...+-+.+.++.++++.+. ....+|--|..+|.-++.. .+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 467999999999999999999988999999999975 6677787777777766664 33455554443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.72 E-value=12 Score=47.34 Aligned_cols=142 Identities=22% Similarity=0.180 Sum_probs=107.5
Q ss_pred hhHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~----s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~ 616 (828)
..++|.+++..+ .++|+.|..|.-+|..|..-+.+.+. ...|.|+..+. ++++.++.+++-+|+.|+..=
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 456777888774 55799999999999998876644332 35899999997 689999999999999997542
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+|- + .-.-+.|...|...+..+|.+|..+|.+|-..+ .|--.|.++.+..+|.+++.+++..|-.....|+.
T Consensus 993 pnl---i-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNL---I-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc---c-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 1 123456778889999999999999999996543 34445999999999999999888877755555543
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.01 E-value=4.1 Score=42.81 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhCCc-------HHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCHHhHH-HHHhCCCHH
Q 003339 723 MVDKAVAVLANLATIPDGRVAIGQENG-------IPVLVEVV-ELGSARGKENAAAALLQLCTNSSRFCS-MVLQEGAVP 793 (828)
Q Consensus 723 v~~~Al~~LanLa~~~e~r~~i~~~g~-------I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~~~~~-~v~~~g~v~ 793 (828)
-+..|+.+|..|+-.+.+...+...+- +..|++++ ..+++-.||.|+.+|.+||..+...+. ...+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 357788888888888888777776553 33444444 347889999999999999999987764 445688999
Q ss_pred HHHHhhcCCCHHHHHHH
Q 003339 794 PLVALSQSGTPRAKEKA 810 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA 810 (828)
.|+..+......+...+
T Consensus 220 ~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988765544433
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.89 E-value=0.4 Score=40.69 Aligned_cols=50 Identities=30% Similarity=0.503 Sum_probs=34.2
Q ss_pred CCCcccccCccccccC-Ceec-CCCcchhHHHHHHHHhcC--CCCCCCCCCcCC
Q 003339 236 IPSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 285 (828)
.|-+=.||-|.-.=.| |.++ -|-|.|-+.||.+|+... ...||.|||...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444556655433222 4444 689999999999999853 345999999754
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=81.89 E-value=64 Score=35.90 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=113.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChhhHHHHHhc-C-cHHHHHHHHcCC-----C--------HHHHHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIANC-G-AINILVDMLHSS-----E--------TKIQENAV 606 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~-~s~~nr~~i~~~-G-aI~~Lv~lL~s~-----d--------~~v~e~A~ 606 (828)
..++.+.+.|.+.....+..+++.|..++. .+......+... + -.+.|..++... + +.++...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 457788889988888888889999999888 665555555543 3 344566666321 1 27777888
Q ss_pred HHHHHhhcC--CccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCc----chHHHHHhhCChHHHHHhhcC
Q 003339 607 TALLNLSIN--DNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS-VIE----DNKIKIGRSGAIGPLVDLLGN 678 (828)
Q Consensus 607 ~aL~nLs~~--~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~----e~k~~I~~~g~I~~Lv~LL~s 678 (828)
..+..+... ...+..+.+ .+.+..+.+-|...+.++....+.+|..-. .++ ..|..+....++..|+.+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 777666433 344666654 467888999999988999999999998533 322 346667777889999998876
Q ss_pred CCH----HHHHHHHHHHHHchhcchhH
Q 003339 679 GTP----RGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 679 ~~~----~~~~~Al~aL~nLs~~~~n~ 701 (828)
..+ .+...+-..|..+|.++.+-
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCcc
Confidence 666 78888888999998765543
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=81.80 E-value=80 Score=33.99 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=124.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCcc-HHHHH
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNN-KSAIA 623 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~-k~~I~ 623 (828)
.|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ +|......++.+|..|...... ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 34567888889999999999886655433221 122335667766644 4666666667777666533221 111
Q ss_pred HcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcc
Q 003339 624 NANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~--s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~ 698 (828)
....+..+.+-.. +-....|..+..+|..|..+ +...+.. .+++..+++++..+ +|+....+...+..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 0112222222111 11245677777777776543 2333322 36788888888765 8999988888888776643
Q ss_pred hhHHHHHHhCcHHHHHHhc--------CC---Ch-HH-HHH-HHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHH
Q 003339 699 ENKARIVQAGAVKHLVDLM--------DP---AA-GM-VDK-AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARG 764 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL--------~~---~~-~v-~~~-Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ 764 (828)
+. ...++.|.+.+ .+ ++ .+ .+. ..++...|++++.- ..-.+|.|++.|.+.++.+
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHH
Confidence 32 33344444433 11 11 12 222 23333444444322 2246899999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 003339 765 KENAAAALLQLCTNS 779 (828)
Q Consensus 765 ke~Av~~L~~L~~~~ 779 (828)
|..+..+|...+...
T Consensus 225 K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 225 KLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999998877654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.48 E-value=56 Score=39.50 Aligned_cols=132 Identities=18% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC
Q 003339 600 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG 679 (828)
Q Consensus 600 ~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~ 679 (828)
.+...+++.+..|-..+..-. .-.|.+..|++-..+.+..+|.+.+.+|.-++....-...-+-.+.+..|..-|.+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 344555555544432221111 223566777777778889999999999988875222222333446677777778888
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh
Q 003339 680 TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
.+.++..|+.||..+=.++.+ =+..++..+..++ +++.+++..|+ .|++-.+..
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsT 194 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNST 194 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCCcHHHHHHHH---HhhccCccc
Confidence 899999999999888532211 1234566777777 67777777654 444444333
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=80.73 E-value=9.8 Score=40.73 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHchhcchhHHHHHHhC--cHHHHHHhc-CC----ChHHHHHHHHHHHHHhCCc-hhHH-HHHhCCc
Q 003339 679 GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLM-DP----AAGMVDKAVAVLANLATIP-DGRV-AIGQENG 749 (828)
Q Consensus 679 ~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G--~V~~Ll~LL-~~----~~~v~~~Al~~LanLa~~~-e~r~-~i~~~g~ 749 (828)
..+..+..+++++.|+-.+...+..+.... .+-..+..+ .. +..++..+..++.|++..- ..+. .=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 467888899999999998888887777633 233333333 33 4566677778888887511 1110 0000112
Q ss_pred HHHHHHHHc-c-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHH
Q 003339 750 IPVLVEVVE-L-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQAL 813 (828)
Q Consensus 750 I~~Lv~lL~-s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~l 813 (828)
+..+++.+. . .++++..+++.+|.+|+..++.........|+...+..... ...+|+++.+.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 445555332 2 68999999999999999877655555544566655555544 4468898888764
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.18 E-value=0.77 Score=50.46 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred cccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 239 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+.|.|++++|.| |++.|.|++|-...|+.|=...+-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3689999999987 9999999999999999997765577999988776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 828 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 3e-21 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 3e-11 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 4e-05 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 5e-05 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 1e-04 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 2e-04 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 7e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 2e-72
Identities = 52/236 (22%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 607
+ + L S + Q AT + + + + + GA+ LV +L S +I + A+
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 608 ALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-IGR 665
AL N++ + A+ +A A+ L+ +L + + + + A L +++ + +I+ +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGM 723
+GA+ LV LL + + ++A AL N++ E ++ AGA+ LV L+ P +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 724 VDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778
+ +A+ L+N+A+ + + A+ + + L ++ + + ++ A AL +L ++
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-39
Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLL 676
+ + + + + L + + + +A + S + + +GA+ LV LL
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 677 GNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 734
+ + ++A AL N++ + + ++ AGA+ LV L+ P ++ +A+ L+N+
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 735 ATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 793
A+ + A+ +P LV+++ + + + A AL + + + V+ GA+P
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183
Query: 794 PLVALSQSGTPRAKEKAQALLSY 816
LV L S + ++A LS
Sbjct: 184 ALVQLLSSPNEQILQEALWALSN 206
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 714
+ + + + L + + + A + E ++ AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 715 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 772
L+ P ++ +A+ L+N+A+ + A+ +P LV+++ + + + A AL
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
+ + + V+ GA+P LV L S + ++A LS
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ LV+ L S + +EA L +A + + + GA+ L + KIQ+
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 605 AVTALLNLSIN 615
A AL L +
Sbjct: 242 AQEALEKLQSH 252
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 2e-69
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)
Query: 545 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V +V +++T+ ++T R L L+ H + + I G I LV ML S +
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 604 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 661
A+T L NL + + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKARIVQAGAVKHLVDLM-DP 719
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
+ +V + L NL+ + + E + LV+++ AA L L N+
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
+ MV Q G + LV R A+
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 1e-63
Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 603
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 662
L NLS + AI + I L+ +L + A TL +L + E K+
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDP-- 719
+ +G + +V LL + L L+ + E+K I+ +G + LV++M
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
++ VL L+ + AI + G+ L + S R +N L L +
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
++ EG + LV L S A +LS
Sbjct: 259 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-56
Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 11/280 (3%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 603
++K+V L T++ T L++LA N +++++I G LV+++ + + K+
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 262
Query: 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 719
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Query: 720 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
+ + ++GA+P LV L + + +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 1e-56
Identities = 64/303 (21%), Positives = 101/303 (33%), Gaps = 35/303 (11%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L L S + LR L+ G + LV +L S + +
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 285
Query: 605 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP--EARENAAATLFSLSVI----E 657
A L NL+ N NK + IE L+ + + E A L L+ E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 658 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 716
+ + + +V LL + A L NL++ N A + + GA+ LV L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
Query: 717 M-----------------------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753
+ +V+ L LA R+ I N IP+
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465
Query: 754 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813
V+++ + AA L +L + + EGA PL L S A A+
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524
Query: 814 LSY 816
L
Sbjct: 525 LFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-38
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 7/215 (3%)
Query: 608 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 666
A++NL IN + A AI L +L AA + LS E ++ I RS
Sbjct: 1 AVVNL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 667 GAIGPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMV 724
+ +V + N + A L NLS + E I ++G + LV ++ P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 725 DKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 783
A+ L NL +G ++A+ G+ +V ++ + + L L +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 784 SMVLQEGAVPPLVALSQSGTPRA-KEKAQALLSYF 817
++L G LV + ++ T +L
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 5e-29
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 22/170 (12%)
Query: 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ----- 602
+V+ L S +AT L N + GAI LV +L + Q
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419
Query: 603 -----------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 645
E AL L+ + +N+ I N I + +L + +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695
AA L L+ ++ I GA PL +LL + AA LF +S
Sbjct: 480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 2e-66
Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)
Query: 545 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V +V +++T+ ++T R L L+ H + + I G I LV ML S +
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 604 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 661
A+T L NL ++ + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 719
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
+ +V + L NL+ G E + LV+++ AA L L N+
Sbjct: 237 SQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
+ MV Q G + LV R A+
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 5e-62
Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 603
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 662
L NLS + AI + I L+ +L + A TL +L + E K+
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD--P 719
+ +G + +V LL + L L+ + E+K I+ +G + LV++M
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
++ VL L+ + AI + G+ L + S R +N L L +
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
++ EG + LV L S A +LS
Sbjct: 256 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 2e-56
Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 11/282 (3%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-TKIQE 603
++K+V L T++ T L++LA N +++++I G LV+++ + K+
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 259
Query: 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 719
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319
Query: 720 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
+ + ++GA+P LV L + + +
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 192 bits (488), Expect = 4e-52
Identities = 63/317 (19%), Positives = 110/317 (34%), Gaps = 36/317 (11%)
Query: 529 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 588
+ A + + G+ + LV+ L S ++ A L L +N N+M++ G I
Sbjct: 252 SDAATKQEGMEGL---LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 589 ILVDML--HSSETKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEA 642
LV + I E A+ AL +L+ + ++A+ + ++ +L S
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 643 RENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT------------ 689
A L L++ N + GAI LV LL ++ +
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428
Query: 690 ----------ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 738
AL L+ N+ I + V L+ P + A VL LA
Sbjct: 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488
Query: 739 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
+ AI E L E++ + AAA L ++ + + +V +L
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP---QDYKKRLSVELTSSL 545
Query: 799 SQSGTPRAKEKAQALLS 815
++ E A L
Sbjct: 546 FRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-44
Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 5/246 (2%)
Query: 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHV 634
AI L +L+ + + A + LS + + + + + + ++
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 635 LQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693
+Q + E A TL +LS + + I +SG I LV +LG+ A T L N
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 694 LSIYHEN-KARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATI-PDGRVAIGQENGI 750
L ++ E K + AG ++ +V L++ + L LA + ++ I G
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 751 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810
LV ++ + + +L++ + S +++ G + L + R +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Query: 811 QALLSY 816
L
Sbjct: 245 LWTLRN 250
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 6e-36
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 7/210 (3%)
Query: 611 NLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAI 669
NL IN + A AI L +L AA + LS E ++ I RS +
Sbjct: 1 NL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 58
Query: 670 GPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKA 727
+V + N + A L NLS + E I ++G + LV ++ P ++ A
Sbjct: 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 118
Query: 728 VAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 786
+ L NL +G ++A+ G+ +V ++ + + L L + ++
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 787 LQEGAVPPLVALSQSGTPRA-KEKAQALLS 815
L G LV + ++ T +L
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-29
Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 25/214 (11%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ-- 602
+ +V+ L S +AT L N + GAI LV +L + Q
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 603 --------------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEA 642
E AL L+ + +N+ I N I + +L +
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 473
Query: 643 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 702
+ AA L L+ ++ I GA PL +LL + AA LF +S +
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQ 531
Query: 703 RIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLA 735
+ +V+ L ++ A L A
Sbjct: 532 DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGA 565
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 3/178 (1%)
Query: 522 FVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVI 581
+PR+V + + + T L +LA+ NR+VI
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVI 453
Query: 582 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE 641
I + V +L+S IQ A L L+ + AI A PL +L + +
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 513
Query: 642 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699
AAA LF +S ED + ++ L + A L +
Sbjct: 514 VATYAAAVLFRMS--EDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEP 569
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 5e-65
Identities = 63/308 (20%), Positives = 119/308 (38%), Gaps = 32/308 (10%)
Query: 535 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 594
A G++ + + + A L L+ ++R + G + + ++L
Sbjct: 28 EAHEPGMD----QDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 82
Query: 595 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 641
++ A AL NL+ D NK+ + + + L+ L++ S +
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142
Query: 642 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIYH 698
++ A+ L +LS D +K + G++ L++ K +AL+NLS +
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
Query: 699 -ENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 747
ENKA I GA+ LV + + +++ +L N+ AT D R + +
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262
Query: 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 807
N + L++ ++ S NA L L + + + GAV L L S
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 322
Query: 808 EKAQALLS 815
+ A L
Sbjct: 323 MGSAAALR 330
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 2e-44
Identities = 49/272 (18%), Positives = 104/272 (38%), Gaps = 19/272 (6%)
Query: 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 599
++ S+ +R A L L ++ N+ + + G + LV L S
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141
Query: 600 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI 656
+Q+ + L NLS + N+K + +++ L+ ++ + L++LS
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201
Query: 657 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 706
+NK I GA+ LV L + + L N+S +++ + +
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261
Query: 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARG 764
++ L+ + + +V A L NL+ P + A+ + +L ++
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321
Query: 765 KENAAAALLQLCTNSS---RFCSMVLQEGAVP 793
+AAAL L N + +++ ++P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-40
Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 18/242 (7%)
Query: 528 STSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLA-KHNMDNRMVIANCGA 586
+ +A L ++ +R LV LKS S D Q+ + LR L+ + +++++ + G+
Sbjct: 112 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171
Query: 587 INILVDML-HSSETKIQENAVTALLNLSI-NDNNKSAIANAN-AIEPLIHVL----QTGS 639
+ L++ + ++ ++AL NLS NK+ I + A+ L+ L QT +
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 640 PEARENAAATLFSLSVI----EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695
E+ L ++S + ED++ + + + L+ L + + +A L+NLS
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291
Query: 696 IYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENG 749
+ +++ + GAV L +L+ + + A L NL + +
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351
Query: 750 IP 751
+P
Sbjct: 352 LP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 5e-40
Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 31/289 (10%)
Query: 557 LDTQREATAELRLLAKH----NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612
+ L LL + A+ ++ + + + AV L+ L
Sbjct: 1 MGHHHHHHM-LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 59
Query: 613 SINDNNKSAIANANAIEPLIHVLQTG-----------SPEARENAAATLFSLSVIED-NK 660
S ++ ++ A+ ++ + +LQ S R A L +L+ + NK
Sbjct: 60 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119
Query: 661 IKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQAGAVKHLVDLM 717
+ G + LV L + + ++ A+ L NLS +K + + G+VK L++
Sbjct: 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179
Query: 718 DPA--AGMVDKAVAVLANLATI-PDGRVAIGQENG-IPVLVEVV----ELGSARGKENAA 769
+ ++ L NL+ + + I +G + LV + + + E+
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239
Query: 770 AAL---LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
L L + ++ + + L+ +S + A L
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-30
Identities = 39/224 (17%), Positives = 79/224 (35%), Gaps = 22/224 (9%)
Query: 615 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD 674
+ A+ ++ + + A L LS E+++ + G + + +
Sbjct: 21 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80
Query: 675 LLGNGTPRGKKD-----------AATALFNLSIY-HENKARIVQ-AGAVKHLVDLMD-PA 720
LL A AL NL+ NKA + G ++ LV + +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140
Query: 721 AGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVE-VVELGSARGKENAAAALLQLCT 777
+ +VL NL+ + + + + + L+E +E+ ++ +AL L
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 778 NSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 816
+ + + +GA+ LV SQ+ T E +L
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 1e-64
Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 8/275 (2%)
Query: 545 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V +V +++T+ ++T R + L L+ H+ + + I G I LV+ML S +
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 604 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 661
+A+T L NL ++ + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 719
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
+ +V + L NL+ + + E + LV+++ AA L L N+
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814
+ MV Q G + LV R A+
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 5e-56
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 11/281 (3%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 603
++K+V L T++ T L++LA N +++++I G LV+++ + + K+
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 395
Query: 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 719
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455
Query: 720 AAGMVDKAVAVLANLATIPDG----RVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
+ + ++GA+P LV L + + +
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 4e-52
Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 35/303 (11%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L L S + LR L+ G + LV +L S + +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 418
Query: 605 AVTALLNLSINDN-NKSAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKI 661
A L NL+ N+ NK + IE L+ + + E A L L+ +
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 662 K----IGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 716
+ + +V LL + A L NL++ N A + + GA+ LV L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 717 MDPA-----------------------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753
+ A +V+ L LA R+ I N IP+
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598
Query: 754 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813
V+++ + AA L +L + + EGA PL L S A A+
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 657
Query: 814 LSY 816
L
Sbjct: 658 LFR 660
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-31
Identities = 49/257 (19%), Positives = 81/257 (31%), Gaps = 31/257 (12%)
Query: 545 VRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMV---IANCGAINILVDMLHSSET 599
+ LV + D A LR L + D M + + ++V +LH
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 600 KIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGSPEAR--------------- 643
A L+ NL++ N + + AI L+ +L + +
Sbjct: 503 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 562
Query: 644 -------ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
E L L+ N+I I I V LL + ++ AA L L+
Sbjct: 563 VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622
Query: 697 YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 755
E I GA L +L+ G+ A AVL ++ D + + +
Sbjct: 623 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE--DKPQDYKKRLSVELTSS 680
Query: 756 VVELGSARGKENAAAAL 772
+ E L
Sbjct: 681 LFRTEPMTWNETGDLGL 697
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 3e-26
Identities = 44/282 (15%), Positives = 76/282 (26%), Gaps = 14/282 (4%)
Query: 539 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE 598
SGI + L + ++ + + I+ +
Sbjct: 33 SGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADID-----GQYAM 87
Query: 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED 658
T+ Q + +A + L S + I
Sbjct: 88 TRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNL------INY 141
Query: 659 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM 717
+ AI L LL + AA + LS ++ I++ V +V M
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 718 DPA--AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
L NL+ +G +AI + GIP LV ++ +A L L
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL 261
Query: 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
+ V G + +VAL + L
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 213 bits (543), Expect = 4e-61
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 28/308 (9%)
Query: 535 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 594
E + + + + A L L+ ++R + G + + ++L
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 198
Query: 595 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 641
++ A AL NL+ D NK+ + + + L+ L++ S +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 642 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY- 697
++ A+ L +LS D +K + G++ L++ K +AL+NLS +
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 698 HENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 747
ENKA I GA+ LV + + +++ +L N+ AT D R + +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 807
N + L++ ++ S NA L L + + + GAV L L S
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 808 EKAQALLS 815
+ A L
Sbjct: 439 MGSAAALR 446
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 167 bits (423), Expect = 8e-45
Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 16/256 (6%)
Query: 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 599
++ S+ +R A L L ++ N+ + + G + LV L S
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257
Query: 600 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVI 656
+Q+ + L NLS + N+K + +++ L+ + ++ + L++LS
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 657 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 706
+NK I GA+ LV L + + L N+S +++ + +
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG 764
++ L+ + + +V A L NL+ P + A+ + +L ++
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437
Query: 765 KENAAAALLQLCTNSS 780
+AAAL L N
Sbjct: 438 AMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-38
Identities = 49/324 (15%), Positives = 108/324 (33%), Gaps = 50/324 (15%)
Query: 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL----------- 590
++ S + + A+A L + D++ +++L
Sbjct: 81 GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140
Query: 591 -------------VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT 637
+ + + AV L+ LS ++ ++ A+ ++ + +LQ
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200
Query: 638 G-----------SPEARENAAATLFSLSVI-EDNKIKIGRS-GAIGPLVDLLGNGTPRGK 684
S R A L +L+ NK + G + LV L + + +
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260
Query: 685 KDAATALFNLSIYH--ENKARIVQAGAVKHLVDLMDPA--AGMVDKAVAVLANLATI-PD 739
+ A+ L NLS +K + + G+VK L++ + ++ L NL+ +
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320
Query: 740 GRVAIGQENG-IPVLVEVV----ELGSARGKENAAAAL---LQLCTNSSRFCSMVLQEGA 791
+ I +G + LV + + + E+ L L + ++ +
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380
Query: 792 VPPLVALSQSGTPRAKEKAQALLS 815
+ L+ +S + A L
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLW 404
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 4e-36
Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 60/346 (17%)
Query: 530 SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINI 589
S + T+V + L + + + L ++ + D+ + + G + +
Sbjct: 16 PRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPL 74
Query: 590 LVDMLHSSE------------TKIQENAVTALLNLSINDNNKSAIANANAIEPL------ 631
L+ +LH ++ + + A AL N+ + + + L
Sbjct: 75 LIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134
Query: 632 -------------------IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 672
+ + A L LS E+++ + G + +
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194
Query: 673 VDLLGNGTPRGKKD-----------AATALFNLSIYH-ENKARIVQ-AGAVKHLVDLMD- 718
+LL A AL NL+ NKA + G ++ LV +
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254
Query: 719 PAAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQL 775
+ + +VL NL+ D + + + + L+E E+ ++ +AL L
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314
Query: 776 CTNSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 816
+ + + +GA+ LV SQ+ T E +L
Sbjct: 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 545 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDML----HSSE 598
V+ L+E + T + + L L+ H +N+ I GA+ LV L ++
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 599 TKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
I E+ L N+S N++++ + N ++ L+ L++ S NA TL++LS
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 655 V-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 703
++ + GA+ L +L+ + +A AL NL K +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 53/289 (18%)
Query: 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ------------ 636
++ +L T +++ LL +S + ++ ++ + + LI +L
Sbjct: 33 MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92
Query: 637 TGSPEARENAAATLFSLSVIEDN-------------------------KIKIGRSGAIGP 671
GS EAR A+A L ++ + + + + +
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152
Query: 672 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------------DP 719
+ + A L LS E++ + + G ++ + +L+
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 212
Query: 720 AAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777
+ + A L NL + + LV ++ S ++ A+ L L
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272
Query: 778 NSSRFCSMVLQE-GAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRHGN 824
+ L+E G+V L+ + + + L N
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 5e-60
Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ ++V+ L S + A +L +A + + + GA+ LV +L S +I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 605 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 662
A+ AL N++ + A+ +A A+ L+ +L + + + + A L +++ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLM-DPA 720
+ +GA+ LV LL + + ++A AL N++ + + + +AGA++ L L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 721 AGMVDKAVAVLANLAT 736
+ +A L L +
Sbjct: 194 EKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 41/207 (19%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Query: 577 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL 635
+ + + +V L+S + + ++A+ L ++ + A+ +A A+ L+ +L
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 636 QTGSPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694
+ + + + A L +++ + +I+ + +GA+ LV LL + + ++A AL N+
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 695 S-IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIP 751
+ +E ++ AGA+ LV L+ P ++ +A+ L+N+A+ + + A+ + +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183
Query: 752 VLVEVVELGSARGKENAAAALLQLCTN 778
L ++ + + ++ A AL +L ++
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 714
+ + + +V L + + + A L ++ E ++ AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60
Query: 715 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 772
L+ P ++ +A+ L+N+A+ + A+ +P LV+++ + + + A AL
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810
+ + + V+ GA+P LV L S + ++A
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ LV+ L S + +EA L +A + + + GA+ L + KIQ+
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 605 AVTALLNLSIN 615
A AL L +
Sbjct: 200 AQEALEKLQSH 210
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-55
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 7/278 (2%)
Query: 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V + VE LK + Q E+ L +A N ++ GA+ I +++L S +QE
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 604 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKI 661
AV AL N++ + + + + N + PL+ + + NA L +L +
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185
Query: 662 KIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D 718
+ + S + L LL DA AL LS ++ ++ AG + LV+L+
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245
Query: 719 PAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777
+V A+ + N+ T D I + + L+ ++ K+ A + +
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305
Query: 778 NSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
+ V+ P L+++ Q+ R +++A ++
Sbjct: 306 GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 4e-40
Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 7/279 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 603
V +E L S D Q +A L +A + R + +C + L+ + + +
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTR 168
Query: 604 NAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662
NAV AL NL + A + + L +L + +A L LS ++KI+
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228
Query: 663 -IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD-P 719
+ +G LV+LL + + A A+ N+ I+ A++ L+ L+ P
Sbjct: 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP 288
Query: 720 AAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778
+ +A ++N+ + N P L+ +++ R ++ AA A+ +
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348
Query: 779 SSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
S +++ G + PL L + + A L
Sbjct: 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 6e-31
Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 5/235 (2%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
G + + + + L L + D +A L L+ D + + G L
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Query: 591 VDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 649
V++L ++ K+ A+ A+ N+ + +D I N +A++ L+H+L + ++ A T
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299
Query: 650 LFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQ 706
+ +++ +I+ + + L+ +L R +K+AA A+ N + E +V+
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359
Query: 707 AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 760
G +K L DL+ + +V A+ L N+ + + P + E
Sbjct: 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 8/217 (3%)
Query: 608 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN---KIKIG 664
A+ NN +I ++ + SPE + +A L E N I
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 665 RSGAIGPLVDLLGNGT-PRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM-DPAA 721
G + V+ L + ++A L N+ S ++QAGAV ++L+
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 722 GMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNS 779
+ ++AV L N+A R + N +P L+++ + NA AL LC
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
S + L L A LSY
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 174 bits (441), Expect = 8e-47
Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 11/282 (3%)
Query: 545 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
+ K V L K+ Q E+ L +A + + + GAI + +L S I E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 604 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPE-----ARENAAATLFSLSVIE 657
AV AL N++ + + AI+PL+ +L N TL +L +
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 658 DNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVD 715
+ + + LV LL + P D+ A+ L+ E +V+ G V LV
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 716 LM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
L+ +V A+ + N+ T D + + V ++ ++ A +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
+ V+ G VP LV + + +++A ++
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-32
Identities = 46/280 (16%), Positives = 103/280 (36%), Gaps = 13/280 (4%)
Query: 551 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 610
DL + + R T L L ++ + A + LV +LH ++ ++ ++ A+
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 611 NLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGA 668
L+ + + + L+ +L A + ++ D K+ +GA
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
Query: 669 IGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPAAGMVDK- 726
+ LL N +K+A + N+ + + ++V G V LV ++ A K
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 727 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 778
A + N + + V + I L+ ++ + + A+ +
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437
Query: 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 817
+ + M+ + G + + AL + + + L+ YF
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 11/202 (5%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V +LV+ L +T L A + + + + + GA+ + +L + +T IQ+
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
Query: 605 AVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 661
A + N+ + + + N + L+ VL + ++ AA + + + + +
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-------IVQAGAVKHLV 714
+ G I PL++LL + + A+ N+ E I + G + +
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455
Query: 715 DLMD-PAAGMVDKAVAVLANLA 735
L + ++ ++
Sbjct: 456 ALQRHENESVYKASLNLIEKYF 477
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 9e-22
Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 11/226 (4%)
Query: 602 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK- 660
+ T + ++ D + ++E ++ + + + E++ A L E
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 661 -IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM 717
I R+G I V LG + ++A AL N+ S E +V GA+ + L+
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 718 D-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG-----KENAAA 770
P A + ++AV L N+A R + + I L+ ++ + N
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212
Query: 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
L LC N + + E +P LV L P + +SY
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-43
Identities = 61/301 (20%), Positives = 125/301 (41%), Gaps = 7/301 (2%)
Query: 524 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIA 582
+S + + S ++ ++ ++ + L S + Q AT + R +L++ + V+
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 583 NCGAINILVDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSP 640
G + LV+ + ++ +Q A AL N+ S + +A+A+ I +L TGS
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 641 EARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699
E +E A L +++ D + + + A+ P++ L + P + A L NL +
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247
Query: 700 NKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEV 756
+ + A+ L L+ + A ++ L+ P + + LVE+
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 757 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
+ S + A A+ + T + +V+ G +P L L S K++A +S
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367
Query: 817 F 817
Sbjct: 368 I 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-40
Identities = 54/280 (19%), Positives = 109/280 (38%), Gaps = 8/280 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V ++ L + S++ + +A L +A + D R + C A+ ++ + +S++ +
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 605 AVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
A L NL + A+ L ++ + E +A + LS I+
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294
Query: 664 G-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMD-PA 720
LV+LL + + + A A+ N+ ++ AG + L L+ P
Sbjct: 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354
Query: 721 AGMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC--- 776
+ +A ++N+ A + A+ N IP LV+++E+ + K+ A A+
Sbjct: 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414
Query: 777 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
++ +G + PL L + R E L
Sbjct: 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 6e-40
Identities = 56/279 (20%), Positives = 116/279 (41%), Gaps = 6/279 (2%)
Query: 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V +LVE ++ + Q EA L +A V+ + A+ + + +L++ +++E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 604 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662
A+ AL N++ + + + + NA+EP++ + + P A TL +L + +
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251
Query: 663 IGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGAVKHLVDLM-DP 719
S A+ L L+ + DA A+ LS E ++ K LV+L+
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 720 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778
+ + A+ + N+ T + +P L ++ K+ A + +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
++ V+ +PPLV L + + K++A +S
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-26
Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 38/297 (12%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
G + + D S + + L + + S +T +A + L+ + + + L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 591 VDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 649
V++L T +Q A+ A+ N+ ND + NA + L +L + ++ A T
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364
Query: 650 LFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR----I 704
+ +++ + + + I PLV LL + KK+A A+ N S + +
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424
Query: 705 VQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763
V G +K L DL++ A +++ + L N+
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENIL---------------------------- 456
Query: 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YFRN 819
+ A N + + + G + + Q+ + EKA ++ YF
Sbjct: 457 --KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 4e-16
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 5/184 (2%)
Query: 639 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698
P + SV D + + + L + + + A +
Sbjct: 59 IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118
Query: 699 EN--KARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVL 753
++QAG V LV+ M + + +A L N+A+ + + +P+
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178
Query: 754 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813
++++ GS KE A AL + +S+ + VLQ A+ P++ L S P A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238
Query: 814 LSYF 817
LS
Sbjct: 239 LSNL 242
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 6e-43
Identities = 52/318 (16%), Positives = 96/318 (30%), Gaps = 36/318 (11%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ K V+ L S Q ++ + + + G I LVD+L S +Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 605 AVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIK 662
A AL NL + NK N I + +L +TG+ E ++ L++LS ++ K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 663 IGRSGAIGPLVDLL---GNGTPRGK-------------KDAATALFNLSIYHENKARIVQ 706
+ A+ L D + +G G +A L NLS + +
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 707 -AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG----- 760
+G + L+ + + N + ++
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 761 -----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 809
S + N L + + + A+ + L A +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 810 AQALLSYFRNQRHGNAGR 827
A A G
Sbjct: 303 ACAGALQNLTASKGLMSS 320
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 543 TQVRKLVEDLKSTSLDTQREATAE-LRLLAKHN-----MDNRMVIANCGAINILVDMLHS 596
+R + + + D EA A L+ L ++++ + + +L S
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 597 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSP------EARENAAATL 650
+ + + + L N+S + + N + +L + + + +A T+
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 651 FSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKA 702
+L + S + +++L + +P+ + A L ++ E +
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 9e-23
Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 32/294 (10%)
Query: 553 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612
+ + AT LR L+ + + + G I+ L+ + + + + + +
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
Query: 613 SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA----------------TLFSLSVI 656
+ N + + +++ L
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272
Query: 657 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKAR------IVQAGA 709
+ S AI ++L+G +A AL NL+ + ++
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 710 VKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK--- 765
+ + L+ + +V ++L+N++ P +G P + ++ +
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSE 391
Query: 766 ---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS 815
+A + L + + + ++ L +S +P+A E A+ LLS
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 93.4 bits (231), Expect = 4e-20
Identities = 34/251 (13%), Positives = 77/251 (30%), Gaps = 23/251 (9%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V + L + S E R L + + ++ G + S+ + N
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC------FSNKSDKMMNNN 261
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSV------IE 657
L N + +++AI ++++ E A L +L+
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 658 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM 717
+++ + + + LL +G + A+ L N+S + + + L+
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLL 380
Query: 718 DPAAGMVDK-------AVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKENA 768
G A + NL P + + ++ + S + E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 769 AAALLQLCTNS 779
L + ++
Sbjct: 441 RLLLSDMWSSK 451
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 539 SGIETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 596
R L S S D A +R L + +N ++++ S
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
Query: 597 SET-KIQENAVTALLNLSINDNNKSAI 622
S + K E A L ++ + + +
Sbjct: 431 SASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 163 bits (412), Expect = 2e-42
Identities = 67/380 (17%), Positives = 129/380 (33%), Gaps = 64/380 (16%)
Query: 499 EFPSRVMETRSRSQVIWRRPS--ERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTS 556
+ E Q W + ER + + + + ++ +++ L
Sbjct: 2 SPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL 61
Query: 557 LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-- 614
+ A A L+ L N + + I +LV +L + ++ A AL N+S
Sbjct: 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121
Query: 615 NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLV 673
+ +NK AI N + + L+ +L+ + E TL++LS + K++I A+ L
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALT 180
Query: 674 DLL---GNGTPRGKKDA---------------ATALFNLSIYHEN--KARIVQAGAVKHL 713
D + +G R + A L N+S + G V L
Sbjct: 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240
Query: 714 VDLM-------DPAAGMVDKAVAVLANL--------------------------ATIPDG 740
+ ++ D + +V+ V +L NL + G
Sbjct: 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARG 300
Query: 741 RVAIGQENGIPVLVEVVELGSARG-KENAAAALLQLCTN----SSRFCSMVLQEGAVPPL 795
+ Q + + + +++ E +A A+ LC S + QE A+ +
Sbjct: 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360
Query: 796 VALSQSGTPRAKEKAQALLS 815
L + R + A L
Sbjct: 361 ADLLTNEHERVVKAASGALR 380
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 106 bits (264), Expect = 6e-24
Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNM----DNRMVIANCGAINILVDMLHSSET 599
VR + LK S + + ++ L R + A++ + D+L +
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369
Query: 600 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--------SPEARENAAATLF 651
++ + A AL NL+++ NK I +AI L+ L G S + + T+
Sbjct: 370 RVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428
Query: 652 SLSVI-EDNKIKIGRSGAIGPLVDLL--GNGTPRGKKDAATALFNLSIYHENKARIVQAG 708
+ + K+ + I LV + GN + + + AA L + Y E + + + G
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 5e-23
Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 50/285 (17%)
Query: 538 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS 596
SG E + + + LR ++ + R + C G ++ L+ ++ +
Sbjct: 187 HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246
Query: 597 S------ETKIQENAVTALLNLS--------------------------INDNNKSAIAN 624
++K+ EN V L NLS +
Sbjct: 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306
Query: 625 ANAIEPLIHVLQTGS-PEARENAAATLFSLS-----VIEDNKIKIGRSGAIGPLVDLLGN 678
+ I +L+ P E +A + +L + + + A+ + DLL N
Sbjct: 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366
Query: 679 GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL---------MDPAAGMVDKAVA 729
R K A+ AL NL++ NK I + A+ +LV + + V +
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILN 425
Query: 730 VLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
+ + + + + GI LV + + G+ KE AAAL+
Sbjct: 426 TINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLS 613
S DT + + N++ + I LV + S K A L +
Sbjct: 416 SEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475
Query: 614 INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 659
+ + + V + ++ + + +L +I+ N
Sbjct: 476 GYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRN 521
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 3e-39
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 164 SEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRL- 222
S ++++ L + LI A +L + +Q++ + + +M S + +
Sbjct: 29 SIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMD 88
Query: 223 -VMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281
+ + + IP C +S ELM +P I SG TY+R I++ + P TR
Sbjct: 89 ELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTR 148
Query: 282 QTLAHTTLIPNYTVKALIANWCELN 306
L LIPN +K +I + + N
Sbjct: 149 SPLTQDQLIPNLAMKEVIDAFIQEN 173
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-38
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
P F CP+SLELM DPVIV++GQTYER+ I+KW+D G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 296 KALIANWCELNNVK 309
K+LIA WCE N ++
Sbjct: 65 KSLIALWCESNGIE 78
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-36
Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 30/226 (13%)
Query: 539 SGIETQVRKLVEDLKSTSLD--TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 596
+ +E + + V L++ + A ++ + R + I L+ +L
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63
Query: 597 SETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLS 654
+Q AL NL +++NK +A N + L+ VL QT E ++ L++LS
Sbjct: 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
Query: 655 VIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKD-------------AATALFNLSIYH 698
+ K + A+ L + + +G P G L N+S
Sbjct: 124 SNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182
Query: 699 -ENKARIVQA-GAVKHLVDLM-------DPAAGMVDKAVAVLANLA 735
+ + + + G + LV + P + V +L NL+
Sbjct: 183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-11
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 47/176 (26%)
Query: 628 IEPLIHVLQTGS--PEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGK 684
+E + +L+ P AA + + + + ++ + I L+ LL +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 685 KDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVA 743
+ AL NL +NK + +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELN----------------------------------- 94
Query: 744 IGQENGIPVLVEVVELGSARG-KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
G+P L++V++ K+ L L +N ++ A+ L
Sbjct: 95 -----GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEALLTLTEN 143
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 5e-08
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 707 AGAVKHLVDLM---DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSA 762
++ V ++ + A + + + R + Q GI L++++++ +
Sbjct: 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 763 RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA-LSQSGTPRAKEKAQALLS 815
+ AL L + V + VP L+ L Q+ K++ LL
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 4e-35
Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 8/292 (2%)
Query: 532 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 591
T +L + L E ++ Q V+AN G L
Sbjct: 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501
Query: 592 DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF 651
+ + QE L + + + ++ L+ + G+ + + +A L
Sbjct: 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561
Query: 652 SLSVIEDNKIKIGRSG---AIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQ 706
+ + + ++ I PL++LL T ++ AL NL S+ + RI++
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 707 AGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARG 764
V + + + + A L NL D N + L + E
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 765 KENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLS 815
A AL + + S + C +L + L L + +P + + ++
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 8e-33
Identities = 51/320 (15%), Positives = 103/320 (32%), Gaps = 40/320 (12%)
Query: 537 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 596
+ R+ + D +R A L L +I + +I+ L+D+
Sbjct: 374 AALKLAEACRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG 432
Query: 597 SETKIQENAVTALLNLS---------------------------------INDNNKSAIA 623
VT +NL + + +A
Sbjct: 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492
Query: 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 683
N L + +T S ++E A L ++ +++ + K+ + G + L+ + GT +G
Sbjct: 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552
Query: 684 KKDAATALFNLSIYHENKARIVQAG---AVKHLVDLMDPAAGMVDK--AVAVLANLATIP 738
K+ A AL + I + ++ L++L+ ++ ++ L NLA++
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612
Query: 739 DG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 797
+ R I +E G+ + + AA L L + V L
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672
Query: 798 LSQSGTPRAKEKAQALLSYF 817
L + L+
Sbjct: 673 LCEDEDEETATACAGALAII 692
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 90.7 bits (224), Expect = 8e-19
Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 5/214 (2%)
Query: 525 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQR-EATAELRLLAKHNMDNRMVIAN 583
RI T E +R L+ L+ + E+ L LA N R I
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 584 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN-AIEPLIHVLQTGSPEA 642
++ + L + A L NL ++++ N ++ L + + E
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 643 RENAAATLFSLSVIEDNKIK--IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E 699
A L ++ + + + + + L L+ N +P + + N+ E
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741
Query: 700 NKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 733
++ + ++ L L KA V
Sbjct: 742 IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Query: 529 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAI 587
+ G +V+ L + +T L ++ ++ ++A +
Sbjct: 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710
Query: 588 NILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENA 646
+IL ++ + +Q + +LN+ + + + + +E L + Q +
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770
Query: 647 AATLFSLSVIEDNKIKIGRSGAIGPLVD 674
L+ E +I A P V
Sbjct: 771 EVATQCLAAAERYRIIERSDNAEIPDVF 798
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 20/180 (11%), Positives = 52/180 (28%), Gaps = 5/180 (2%)
Query: 639 SPEARENAAATLFSL--SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL-S 695
+ + A+ L + ++ D + D L K A+ L +
Sbjct: 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLN 276
Query: 696 IYHENKARIVQA-GAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 754
+ ++V G ++ ++ + + + A+ + E G+ +L
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILK 336
Query: 755 EVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813
+ + + A L +L + +GA L + + +
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-28
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
P +F PL LMTDPV + SG +R+ I + + P RQTL + L P +
Sbjct: 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT-DPFNRQTLTESMLEPVPEL 84
Query: 296 KALIANWCE 304
K I W
Sbjct: 85 KEQIQAWMR 93
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-28
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
P +F PL LMTDPV + SG +R+ I + + P RQ L + L P +
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPT-DPFNRQMLTESMLEPVPEL 69
Query: 296 KALIANWCELNNVK 309
K I W
Sbjct: 70 KEQIQAWMREKQSS 83
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 9e-25
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 225 IKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQT 283
++Q + + +F P+ LM DPV++ S + T +R+ I + + P R
Sbjct: 8 LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSP 66
Query: 284 LAHTTLIPNYTVKALIANWCELN 306
L + PN +K I W
Sbjct: 67 LTMDQIRPNTELKEKIQRWLAER 89
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-24
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 165 EILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGE----------AEFMDQMISL 214
++L + S Q I AVA ++ N +A + EF++++++
Sbjct: 808 DLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNF 867
Query: 215 VTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG 273
+ ++ ++ + +P +F PL +M DPVI+ S +R+ IK + L
Sbjct: 868 ANKAEEQRKADEEEDLEYG-DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LS 925
Query: 274 LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304
P R L + PN ++ I + +
Sbjct: 926 DSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 1e-21
Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 8/251 (3%)
Query: 533 ETRADLSGIETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 591
+ ++ L + + + + + + A L L NMDN +++LV
Sbjct: 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLV 87
Query: 592 D-MLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAA 648
L + ++ A + + + A+ L+ +L R A
Sbjct: 88 GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147
Query: 649 TLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQ 706
+ L E ++ R L+ + + K +A L NL + H E+K +
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207
Query: 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 765
G V+ LV L+ + + + L +L T V +E + + + +
Sbjct: 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267
Query: 766 ENAAAALLQLC 776
L+ C
Sbjct: 268 HEEYQEELEFC 278
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 3e-18
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 5/194 (2%)
Query: 629 EPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD-LLGNGTPRGKKDA 687
Q + RE A L L DN + + LV L G + A
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 688 ATALFNLSIYH-ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT-IPDGRVA 743
A + S + +++ GA++ L+ L+ D + KA+ ++ L G +
Sbjct: 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162
Query: 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 803
+ +G VL+ ++ + K +A L L + G V LVAL ++
Sbjct: 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 222
Query: 804 PRAKEKAQALLSYF 817
E L
Sbjct: 223 SPFHEHVLGALCSL 236
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 8e-21
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 169 KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV----- 223
++ + L S LI A +L+E E + + + + HD+ +
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191
Query: 224 MIKQSQI-CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 282
+ Q IP C +S ELM +P I SG TY+R I++ + P TR
Sbjct: 192 LFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRS 251
Query: 283 TLAHTTLIPNYTVKALIANWCELN 306
L LIPN +K +I + N
Sbjct: 252 PLTQEQLIPNLAMKEVIDAFISEN 275
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 9e-16
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 237 PSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWID-----LGLFVCPKT---RQTLAHT 287
S F CP++ E M PV G TYE I + I+ CP+ + +
Sbjct: 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64
Query: 288 TLIPNYTVKALIANWCELNNVKLPDPTKTA 317
LI + ++ I N + + +
Sbjct: 65 DLIQDEALRRAIENHNKKRHRHSESGPSSG 94
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 7e-15
Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 35/261 (13%)
Query: 573 HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI 632
+ N I I+ L +H+ ++ V + N++ + N +A A++ ++
Sbjct: 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIIL 504
Query: 633 HVLQTGSP---EARENAAATLFSLSVIEDNKI---KIGRSGAIGPLVDLLGNGTPRGKK- 685
L R L + + + + K AI L +LL TP
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564
Query: 686 -------------DAATALFNLSIYHEN------KARIVQAGAVKHLVDLMDPAAGMVDK 726
+A AL NL+ + K + + +LM + +
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624
Query: 727 A-VAVLANLATIPDGRVAIGQENGIP-------VLVEVVELGSARGKENAAAALLQLCTN 778
+ + +++N+ + P A P +LV++++L + AA + T
Sbjct: 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684
Query: 779 SSRFCSMVLQ-EGAVPPLVAL 798
+L + + + +
Sbjct: 685 IPLIAKELLTKKELIENAIQV 705
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 4e-09
Identities = 29/246 (11%), Positives = 77/246 (31%), Gaps = 33/246 (13%)
Query: 602 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661
+ I N+ I I L + SP ++ +++++ ++
Sbjct: 433 DKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKD---AATALFNLSIY---HENKARIVQAGAVKHLVD 715
++ + GA+ +++ L N G+ AL + I+ + A+ L +
Sbjct: 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE 552
Query: 716 LMDPAAGMVD---------------KAVAVLANLATIPDG------RVAIGQENGIPVLV 754
L+ + + D +A+ L NLA+ + + + +
Sbjct: 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612
Query: 755 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG------AVPPLVALSQSGTPRAKE 808
++ + + + + + ++ + LV L Q ++
Sbjct: 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQR 672
Query: 809 KAQALL 814
A+
Sbjct: 673 AVAAIF 678
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 4e-06
Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 12/263 (4%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
+ T+ ++ + + + + L L+ M+ +N IL
Sbjct: 322 WSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEIL 381
Query: 591 VDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 649
+ M+ S T + + NLS + P A + A
Sbjct: 382 LTMIKSQKMTHCLYGLLVIMANLSTL--PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK 439
Query: 650 LFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGA 709
++ N+ I R+ I L + N +P K+ ++N++ ++ Q GA
Sbjct: 440 AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGA 499
Query: 710 VKHLVDLMDPAAGMVDK----AVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSA 762
VK +++ + + + L + + + + N IP L E+ L +
Sbjct: 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFEL--LPRS 557
Query: 763 RGKENAAAALLQLCTNSSRFCSM 785
++ + + + ++
Sbjct: 558 TPVDDNPLHNDEQIKLTDNYEAL 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 7e-14
Identities = 98/787 (12%), Positives = 210/787 (26%), Gaps = 285/787 (36%)
Query: 18 HLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSI---D 74
H F++ + +Y +DIL + DA VD + +V ++ +SI +
Sbjct: 5 HHMDFETGEHQY--QY----KDILSVF---EDAFVD-NFDCKDV-----QDMPKSILSKE 49
Query: 75 ELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCS 134
E+ +I + + S L + + + +Q F E+ + +
Sbjct: 50 EIDHIIMSKDAV-SGTLR------LFWTLLSKQ-------EEMVQKFVEEVLRINYKFLM 95
Query: 135 QKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKE 194
I E Q S ++ +Q D + +++ K ++ Q L KL++
Sbjct: 96 SPI-KTEQRQPS-MMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYL-------KLRQ 142
Query: 195 NAEQAEKAGEAEFMDQMISLVTRMHDRLVMI---KQSQICSPVPIPSDFCCPLSLELMTD 251
+ A + + + ++ K ++L++
Sbjct: 143 ALLELRPA-------KNVLI----DG---VLGSGKTW---------------VALDVCLS 173
Query: 252 PVIVA--SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309
+ + + W++L C L L +
Sbjct: 174 YKVQCKMDFKIF-------WLNLKN--CNSPETVLEM------------------LQKLL 206
Query: 310 LP-DPTKTASLNQPSPLFVHADSNAPRDSHIFPHTRGNQQ--IM-----PESTRSTNSPA 361
DP T+ + S + + S + ++ ++ + N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 362 KNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMEL 421
K L++ TR + + ISL + E L
Sbjct: 267 KILLT---TR---------------FKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSL 306
Query: 422 V-----------------GQP---SM-SKSIKEFPATIDTSEQSSHIHNRTASASSVLSN 460
+ P S+ ++SI++ AT D +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---------------- 350
Query: 461 LNLSQGDANETSELSNHSDASGEGKLESQPATTMRRE-------PE---FPSRVMETRSR 510
+L+ ++S L R+ P P+ ++
Sbjct: 351 ---------NCDKLTTIIESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS---- 393
Query: 511 SQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLL 570
+IW + V +V+ KL + S L+
Sbjct: 394 --LIWFDVIKSDVMVVVN------------------KLHK--YS--------------LV 417
Query: 571 AKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANANAI 628
K ++ + I S E K++ AL ++ N +++ +
Sbjct: 418 EKQPKESTISI-------------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 629 EPLI-----------HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDL 675
P H+ PE +E KI+ + A G +++
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNT 523
Query: 676 LG-------------NGTPRGKKDAATALFNLS--IYHENKARIVQAGAVKHLVDLMDPA 720
L R L + + +++ LM
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA-------LMAED 576
Query: 721 AGMVDKA 727
+ ++A
Sbjct: 577 EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 8e-10
Identities = 60/504 (11%), Positives = 149/504 (29%), Gaps = 150/504 (29%)
Query: 28 DIVKKYY-QRAEDILKL------LKPILDAIVD-------SDLA----SDEVLYKAFE-- 67
+ KY R + LKL L+P + ++D + +A + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 68 ----EFGQSIDELRELIENWQPLLSRVYFVL-QVESLMSKIRTSGLDIMLQLKSSLQYFP 122
+ ++E Q LL ++ S I+ I +L+ L+ P
Sbjct: 184 IFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 123 GELSSTSL----ELCSQK-IKHMEYE-QTSSLI---KEAIRDQVDGVAPSSEILVKVAES 173
E L + + K + L+ + + D + + L + +
Sbjct: 243 YE---NCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 174 LSLRSNQEILIEAVALEKLKENAEQAEK------AGEAEFMDQMISLVTR----MHDRLV 223
L+ + +L++ + + ++ + + AE + ++ D+L
Sbjct: 298 LTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 224 MIKQSQI--------------CS--P--VPIPSDFCCPLSLELMTDPVIVASGQTYERAF 265
I +S + S P IP+ + +++ V+V + ++ +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 266 IKKWI--------DLGLFVCPKTRQTLA-HTTLIPNYTVKALIANWCELNNVKLPDPT-- 314
++K + L + K A H +++ +Y + + ++ +P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFD--SDDLIPPYLDQ 471
Query: 315 ----------KTASLNQPSPLF--------------VHADS--NAPRD------------ 336
K + LF H + NA
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 337 SHIFPHTRGNQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPG 396
+I + ++++ +NL+ ++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLIC-----------SKYT--------------- 565
Query: 397 LDIARISLTSSEDRFSNSEERSME 420
D+ RI+L + ++ + ++
Sbjct: 566 -DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 65/301 (21%)
Query: 1 MEISLLKVLLKKISSFLHLSSF-DSIKLDIVK-KYYQRAEDILKLLKPILDAIVDSDLAS 58
L + + LS +SI+ + ++ L I+++ ++ L
Sbjct: 313 CRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNV-LEP 368
Query: 59 DEV--LYKAFEEFGQSID---ELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQ 113
E ++ F S L LI W ++ V +++K+ L + Q
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSD-----VMVVVNKLHKYSL-VEKQ 420
Query: 114 LKSSLQYFPGELSSTSLELCSQKIKHM----EYEQTSSLIKEAI-RDQVDG--------- 159
K S P ++L ++ H Y + + + +D
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 160 --VAPSSEILVKVAES----LSLRSNQEILIEAVALEKLKENAEQAEKAGEA-------E 206
E ++ L R +E K++ ++ +G +
Sbjct: 481 LKNIEHPE---RMTLFRMVFLDFR-----FLEQ----KIRHDSTAWNASGSILNTLQQLK 528
Query: 207 FMDQMISLVTRMHDRLV--MIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERA 264
F I ++RLV ++ I S + L + LM + +E A
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE-----DEAIFEEA 583
Query: 265 F 265
Sbjct: 584 H 584
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 52/235 (22%)
Query: 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 645
+ + + L ++ A AL I + A+EPLI L+ R
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDAWVRRA 69
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 705
AA L +IG A+ PL+ L + ++ AA AL +I
Sbjct: 70 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109
Query: 706 QAGAVKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARG 764
AV+ L+ L D + A L IG E + L++ ++
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWV 159
Query: 765 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819
+++AA AL ++ E + L+++GT A++ A L ++
Sbjct: 160 RQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 52/232 (22%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V +++L+ S +R A L I + A+ L+ L + ++
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 69
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664
A AL I + A+EPLI L+ R++AA L +IG
Sbjct: 70 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109
Query: 665 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 723
A+ PL+ L + + AA AL I AV+ L+ + D +
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 159
Query: 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775
A L IG E + ++ E G+ ++ A L
Sbjct: 160 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-12
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 238 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWI-DLGLFVCPKTRQTLAHTTLIPNYT 294
S C +S ++ PV+ S +E++ +++++ D G P T + L+ ++
Sbjct: 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 52/229 (22%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V +++L+ S +R A L I + A+ L+ L + ++
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 64
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664
A AL I + A+EPLI L+ R++AA L +IG
Sbjct: 65 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALG----------QIG 104
Query: 665 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 723
A+ PL+ L + + AA AL I AV+ L+ + D +
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 154
Query: 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772
A L IG E + ++ E G+ ++ A L
Sbjct: 155 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 58/210 (27%)
Query: 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP 681
+ +E I LQ S R AA L KIG A+ PL+ L +
Sbjct: 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDA 59
Query: 682 RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 740
++ AA AL +I AV+ L+ + D + A L
Sbjct: 60 WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 102
Query: 741 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV---- 796
IG E + L++ ++ + AA AL ++ E AV PL+
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALK 148
Query: 797 ------------ALSQSGTPRAKEKAQALL 814
AL + G R + + L
Sbjct: 149 DEDGWVRQSAADALGEIGGERVRAAMEKLA 178
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 60.4 bits (145), Expect = 5e-10
Identities = 20/193 (10%), Positives = 61/193 (31%), Gaps = 9/193 (4%)
Query: 124 ELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEIL 183
+++ST L + + + +++ +K+ + D L + + L
Sbjct: 65 DITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQID--LSTWDKYRTGELTAPKL 122
Query: 184 IEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPS---DF 240
E E A + + + + + ++ + I +
Sbjct: 123 SELYLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIEL 182
Query: 241 CCPLSLELMTDPVIVAS-GQTYERAFIKKWIDL-GLFVCPKT--RQTLAHTTLIPNYTVK 296
CP++ + P+I ++R I+ ++ CP+ Q ++ + + ++
Sbjct: 183 TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIME 242
Query: 297 ALIANWCELNNVK 309
+ +
Sbjct: 243 LRCKIAKMKESQE 255
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 52/292 (17%), Positives = 106/292 (36%), Gaps = 35/292 (11%)
Query: 530 SGAETRADLSGIETQVRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 588
G + ET ++KL + + ST LD +R A L+ L+K R+ + A+
Sbjct: 9 GGQSAGPQHTEAET-IQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGI-QAME 63
Query: 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 648
L+ +L D + S I A++ L +++ E E +
Sbjct: 64 HLIHVLQ-------------------TDRSDSEIIGY-ALDTLYNIISNDEEEEVEENST 103
Query: 649 TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR---IV 705
+ +I I + + L+ LL + L +L + + +V
Sbjct: 104 RQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163
Query: 706 QAGAVKHLVDLMDPAAGMV-DKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVEL-GSA 762
V L+DL+ + ++ + V +L L + + EN L++++ G++
Sbjct: 164 SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS 223
Query: 763 RGK---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 811
G E+ L L N++ + + + + + G + AQ
Sbjct: 224 DGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 461 LNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSE 520
N+ D E E ++ + L SQ ++ E + ++ R P
Sbjct: 87 YNIISNDEEEEVEENSTRQSE---DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGV 143
Query: 521 RFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV 580
+ + ++ G + + + V +L++ L + + + L+ L + N + +
Sbjct: 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKI 203
Query: 581 IANCGAINILVDMLH----SSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVL 635
+A A L+D++ S + E+ + L NL N++N++ + I+ +
Sbjct: 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263
Query: 636 QTGSPEA 642
+ G +
Sbjct: 264 EVGDENS 270
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 232 SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTLAHT-T 288
PIP + C + ++MTD V++ G +Y I+ ++ CP Q
Sbjct: 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 65
Query: 289 LIPNYTVKALIANW 302
LI N ++ + N+
Sbjct: 66 LIANKFLRQAVNNF 79
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 54/245 (22%)
Query: 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 645
+ L +L + + ++ L +A+ I + R+
Sbjct: 24 NDDELFRLLDDHNSLKRISSARVL----------QLRGGQDAVRLAIEFCSDKNYIRRDI 73
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 705
A L G I + +D + ++ +K+ V
Sbjct: 74 GAFIL----------------GQI---------KICKKCEDNVFNIL-NNMALNDKSACV 107
Query: 706 QAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRV---------AIGQENGIPVLVEV 756
+A A++ K V A V I + IP+L+ +
Sbjct: 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINL 167
Query: 757 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816
++ + + AA A+ ++ V + Q + +A LSY
Sbjct: 168 LKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218
Query: 817 FRNQR 821
+++R
Sbjct: 219 RKDKR 223
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 32/147 (21%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ + + +R+ + L + A L++ L + + +I+
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGA 61
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664
A + + A+EPLI +L+ S R AA +L +IG
Sbjct: 62 AAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQIG 101
Query: 665 RSGAIGPLVDLLGNGTPRGKKDAATAL 691
+ L GT +K A L
Sbjct: 102 GERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 32/150 (21%)
Query: 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 683
+++ + P + + R + + L ++G A PL++ L N R
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTAL----------SRMG-DEAFEPLLESLSNEDWRI 58
Query: 684 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742
+ AA + AV+ L+ L+ D + + A L
Sbjct: 59 RGAAAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ--------- 99
Query: 743 AIGQENGIPVLVEVVELGSARGKENAAAAL 772
IG E + ++ E G+ ++ A L
Sbjct: 100 -IGGERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 232 SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTL 284
PIP + C + ++MTD V++ G +Y I+ ++ CP Q
Sbjct: 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-06
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVK 296
F C EL+ PV + +++ +F CP R L +IPN ++
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136
Query: 297 ALI 299
L+
Sbjct: 137 TLL 139
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 4e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 232 SPVPIPSDFCCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TL 289
SP + S+ CP+ L+++ + + + I + G CP R+ L +L
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
Query: 290 IPNYTVKALIA 300
P+ ALI+
Sbjct: 107 RPDPNFDALIS 117
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292
P+ S + CP+ L + + V G + +A I K I CP + L L P+
Sbjct: 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
Query: 293 YTVKALI 299
K I
Sbjct: 72 NFAKREI 78
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-06
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNY 293
+ F C EL+ P+ + + + +F CP R L + + N
Sbjct: 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107
Query: 294 TVKALI 299
++ ++
Sbjct: 108 PLQTVL 113
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 236 IPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 294
I F C + +E + D + + + I++W+ CP R L L+
Sbjct: 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78
Query: 295 VKALIANWCELNNVKLPDPTK 315
+ + +L+ ++L TK
Sbjct: 79 AEEVTQ---QLDTLQLCSLTK 96
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292
P+ S + CP+ L + + V G + +A I K I CP + L L P+
Sbjct: 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
Query: 293 YTVKALIAN 301
K I +
Sbjct: 72 NFAKREILS 80
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 4/50 (8%), Positives = 16/50 (32%)
Query: 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284
+ + C ++ P G + + + + C ++++
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 235 PIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293
I C + E +I+ Y I+K++ CP T+ L N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNR 76
Query: 294 TVKALIANW 302
+ L+ +
Sbjct: 77 ILDELVKSL 85
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 8/77 (10%), Positives = 19/77 (24%)
Query: 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292
+ + + C ++ P G Y + + G C + I
Sbjct: 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84
Query: 293 YTVKALIANWCELNNVK 309
+ + V+
Sbjct: 85 LESSSAFPDNAARREVE 101
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 4e-04
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI- 290
+P S+ C + +E++ +PV + T + + ++ CP R+ ++ T
Sbjct: 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYH 67
Query: 291 --PNYTVKALIANWCE 304
N V + +
Sbjct: 68 TRRNSLVNVELWTIIQ 83
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWID-----LGLFVCPKTRQTLAHTTLIPNY 293
+ CP+ LEL+ +PV ++ RA I + G CP R L PN
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78
Query: 294 TVKALI 299
V ++
Sbjct: 79 HVANIV 84
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 5e-04
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291
+ P + C + L+ PV + + +K LG C RQ + L
Sbjct: 8 NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDS 66
Query: 292 NY 293
Sbjct: 67 GP 68
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVK 296
CP+ LEL+ +PV + + + K ++ G CP + + +L +
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80
Query: 297 ALI 299
L+
Sbjct: 81 QLV 83
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 828 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.95 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.95 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.94 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.92 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.91 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.91 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.89 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.89 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.88 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.86 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.86 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.86 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.84 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.84 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.83 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.83 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.8 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.79 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.77 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.76 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.73 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.58 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.58 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.52 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.47 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.46 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.43 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.37 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.33 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.31 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.31 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.3 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.29 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.29 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.28 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.27 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.26 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.26 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.26 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.26 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.25 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.25 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.23 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.21 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.2 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.18 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.17 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.15 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.15 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.14 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.14 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.13 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.12 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.11 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.07 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.06 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.01 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.98 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.97 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.96 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.96 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.94 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.9 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.9 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.88 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.84 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.83 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.83 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.79 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.76 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.75 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.73 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.72 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.71 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.7 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.7 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.69 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.67 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.65 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.61 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.61 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.59 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.58 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.53 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.52 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.45 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.4 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.39 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.39 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.36 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.35 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.3 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.29 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.28 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.26 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.26 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.25 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.25 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.23 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.17 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.16 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.06 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.02 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.02 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.98 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.96 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.91 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.89 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.85 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.84 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.76 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.73 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.71 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.64 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.63 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.58 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.58 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.58 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.53 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.52 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.4 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.38 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.31 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.2 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.17 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.3 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.29 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.29 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.24 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.11 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.02 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.98 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 95.65 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.41 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.21 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.01 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.65 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 94.64 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.45 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.24 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 94.17 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 93.96 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 93.92 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 93.37 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 92.35 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.12 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 91.41 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 90.48 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 89.84 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 89.37 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 88.74 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 88.65 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 87.98 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 87.88 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 87.62 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 86.82 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 86.34 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 84.0 | |
| 3pwf_A | 170 | Rubrerythrin; non heme iron peroxidases, oxidative | 83.69 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 83.49 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 82.43 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 81.97 | |
| 2kkx_A | 102 | Uncharacterized protein ECS2156; methods developme | 81.4 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 80.56 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.37 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=277.62 Aligned_cols=265 Identities=22% Similarity=0.274 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHHc
Q 003339 558 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA 625 (828)
Q Consensus 558 ~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~-~k~~I~~~ 625 (828)
..+.+|++.|.+++.+ +++|..|++.|+++.|+.+|.+ .++.++++|+++|.||+.++. ++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999995 7999999999999999999953 246799999999999998765 77777654
Q ss_pred -CCHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchh-cchh
Q 003339 626 -NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHEN 700 (828)
Q Consensus 626 -g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~-~~~n 700 (828)
|+|+.|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 6699999999999999999999999999984 57899999999999999975 66789999999999999999 6788
Q ss_pred HHHHH-HhCcHHHHHHhcC-CCh----HHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003339 701 KARIV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 701 ~~~iv-~~G~V~~Ll~LL~-~~~----~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
+..++ ..|+++.|+.+|. .+. .+++.|+++|.||+. ++++++.+.+.|+++.|+++|++++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 7999999999993 222 589999999999995 8899999999999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccccc
Q 003339 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 823 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~ 823 (828)
+|+||+..+++.+..+++.|+++.|+.++.++++++++.|.++|++|......
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988888999999999999999999999999999999999999876443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=284.42 Aligned_cols=278 Identities=23% Similarity=0.276 Sum_probs=243.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I 622 (828)
.++.|+++|+++++++|..|+..|++|+..++.++..+.+.|+||.|+.+|.++++.+++.|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 378999999999999999999999999998888898999999999999999999999999999999999986 7899999
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh--------cCC--------CHHHHH
Q 003339 623 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL--------GNG--------TPRGKK 685 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL--------~s~--------~~~~~~ 685 (828)
++.|+|++|+++|+ +++.+++++|+++|+||+..+++|..|++ |+++.|+.+| +++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 9999999999 322 456777
Q ss_pred HHHHHHHHchhcchhHHHHHHh-CcHHHHHHhcC-------CChHHHHHHHHHHHHHhCC--------------------
Q 003339 686 DAATALFNLSIYHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI-------------------- 737 (828)
Q Consensus 686 ~Al~aL~nLs~~~~n~~~iv~~-G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~-------------------- 737 (828)
.|+++|.||+.+++++..+++. |+++.|+.+|. .+..+++.|+++|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 99999999983 3556889999999999732
Q ss_pred -------------------------------chhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHh---
Q 003339 738 -------------------------------PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRF--- 782 (828)
Q Consensus 738 -------------------------------~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~--- 782 (828)
+++.+.+++.++++.|+.+|.+ .++.+++.|+++|+|||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 2233445566789999999975 57999999999999999876432
Q ss_pred --HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccc
Q 003339 783 --CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 783 --~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~ 822 (828)
+..+.+.|+++.|+.++.+++.++++.|.++|++|....+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2234468999999999999999999999999999987543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=278.65 Aligned_cols=260 Identities=23% Similarity=0.285 Sum_probs=234.9
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHH-cCC
Q 003339 561 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIAN-ANA 627 (828)
Q Consensus 561 ~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~-~k~~I~~-~g~ 627 (828)
.+|++.|.+++. ++++|..|.+.|+++.|+.+|.. .++.++++|+++|.||+.++. ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 489999999988 48999999999999999999952 246789999999999998765 6767765 466
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchh-cchhHHH
Q 003339 628 IEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHENKAR 703 (828)
Q Consensus 628 l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~-~~~n~~~ 703 (828)
|++|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| .+++..+++.|+.+|+||+. +.+++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 56889999999999999975 55789999999999999999 7789998
Q ss_pred HH-HhCcHHHHHHhcC-CCh----HHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003339 704 IV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 704 iv-~~G~V~~Ll~LL~-~~~----~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
++ ..|+++.|+.+|. ... .+++.|+++|.||+. ++++++.|.+.|+++.|+++|++++..++++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88 7999999999993 222 489999999999994 8899999999999999999999999999999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
||+..+++.+..+++.|++++|+.++.++++++++.|.++|++|....
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999888889999999999999999999999999999999999998764
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=284.89 Aligned_cols=279 Identities=21% Similarity=0.252 Sum_probs=242.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~~k~ 620 (828)
..++.||++|+++++++|..|++.|++|+..+.++|..+++.|+||.|+.+|.++++.++++|+++|.||+.+ +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3489999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc------------------CCCH
Q 003339 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG------------------NGTP 681 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~------------------s~~~ 681 (828)
.|++.|+|++|+.+|++ ++.+++++|+++|++||.++++|..|+. ++++.|+++|. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 57999999871 1257
Q ss_pred HHHHHHHHHHHHchhcch-hHHHHHH-hCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCCc--------------
Q 003339 682 RGKKDAATALFNLSIYHE-NKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIP-------------- 738 (828)
Q Consensus 682 ~~~~~Al~aL~nLs~~~~-n~~~iv~-~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~~-------------- 738 (828)
.++++|+++|+||+.+.+ ++..+++ .|+++.|+.+|. .+...++.|+++|+||+...
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 899999999999999764 5888887 577889999882 45678999999999999752
Q ss_pred ------------hhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH----HhHHHHHhCCCHHHHHHhhcC
Q 003339 739 ------------DGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSS----RFCSMVLQEGAVPPLVALSQS 801 (828)
Q Consensus 739 ------------e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~----~~~~~v~~~g~v~~L~~LL~~ 801 (828)
.|.+.+++.++++.|+.+|. +.++.++++|+++|+|||.+.. ..+..+.++|+++.|+.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 12233344456788899996 5689999999999999998762 233455568999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccc
Q 003339 802 GTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 802 g~~r~r~kA~~lL~~L~~~~~ 822 (828)
+++++++.|.++|++|.....
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999987654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=267.28 Aligned_cols=281 Identities=21% Similarity=0.262 Sum_probs=245.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.|+.|+++|+++++++|..|++.|++|+..++++|..|++.|+||.|+.+|. +.+++++++|+++|.||+.++.+|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 578999999999999999999999999999988999999999999999999999 8899999999999999999988999
Q ss_pred HHHHcCCHHHHHHhh--------cCC--------CHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCC----
Q 003339 621 AIANANAIEPLIHVL--------QTG--------SPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNG---- 679 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL--------~s~--------~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~---- 679 (828)
.+++ |++++|+.+| .++ +..+..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 9999 9999999999 333 3456669999999999998889999987 9999999888630
Q ss_pred --------------------------------------------------------------------------------
Q 003339 680 -------------------------------------------------------------------------------- 679 (828)
Q Consensus 680 -------------------------------------------------------------------------------- 679 (828)
T Consensus 202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (457)
T 1xm9_A 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281 (457)
T ss_dssp CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence
Q ss_pred ---------------CHHHHHHHHHHHHHchhcch-----h-HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003339 680 ---------------TPRGKKDAATALFNLSIYHE-----N-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 680 ---------------~~~~~~~Al~aL~nLs~~~~-----n-~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
++.+++.|+++|.||+.... . +..+.+.|+++.|+++| +.+..++..|+++|.||+.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 24556678999999987432 2 22233689999999999 67788999999999999999
Q ss_pred chhHHHHHhCCcHHHHHHHHccCC------HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHH
Q 003339 738 PDGRVAIGQENGIPVLVEVVELGS------ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKA 810 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s~s------~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA 810 (828)
++.+..|.. ++++.|+++|..++ +++...++++|.+++.++++.+..+.+.|++++|+.|+.++ +++++++|
T Consensus 362 ~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 362 PLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 888877754 78999999998753 46888999999999999888999999999999999999999 99999999
Q ss_pred HHHHHHhhcccccc
Q 003339 811 QALLSYFRNQRHGN 824 (828)
Q Consensus 811 ~~lL~~L~~~~~~~ 824 (828)
.++|.++..+++-|
T Consensus 441 ~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 441 RLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHTTSSSTTCS
T ss_pred HHHHHHHHcchhhh
Confidence 99999999877654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=275.84 Aligned_cols=279 Identities=16% Similarity=0.200 Sum_probs=250.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------hhH---HHHHhcCcHH
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-----------------------------DNR---MVIANCGAIN 588 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-----------------------------~nr---~~i~~~GaI~ 588 (828)
..+.++.|+++|+++++.+|..|++.|.+|+...+ .++ ..++++|+||
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 36899999999999999999999999999998542 123 6788999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH---h
Q 003339 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG---R 665 (828)
Q Consensus 589 ~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~---~ 665 (828)
.|+.+|.++++.++++|+++|.||+.+++++..+++.|++++|+.+|++++...+++|+++|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999888899999999999999999999999999999999999987554443332 2
Q ss_pred hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003339 666 SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
.|++++|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+.+| +.+..++..|+++|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999876 445667999999999996 57889999999999999998 7778899999999999999999988
Q ss_pred HHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 743 AIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 743 ~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+.+ .|+++.|+.++.+.+..+|+.|+++|.+|+.+++..++.+++ .|++++|+.++.+++.++++.|.++|.++..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8885 678999999999999999999999999999988778888888 8999999999999999999999999998875
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=274.84 Aligned_cols=279 Identities=18% Similarity=0.171 Sum_probs=251.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.|+.|+.+|+++++.+|.+|++.|.+|+. +.++|..++++|++|+|+.+|.+.++.++++|+++|.||+.+.+....
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4789999999999999999999999999997 567999999999999999999999999999999999999876443332
Q ss_pred H---HHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 622 I---ANANAIEPLIHVLQTG-SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 622 I---~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..|++.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 2 1247999999999876 455667899999999986 5788899999999999999999999999999999999999
Q ss_pred cchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHH
Q 003339 697 YHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 697 ~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+++.+..+++ .|+++.|+.++ ..+..++..|+++|+||+. ++...+.+++ .|+++.|+.++.+++.++++.|+++|
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999888886 79999999999 5678899999999999999 7888888988 89999999999999999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhccc
Q 003339 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g---~~r~r~kA~~lL~~L~~~~ 821 (828)
.|++.++++....+.+.|++++|+.+++.. ++++.+.|..+|+.+-.+.
T Consensus 733 ~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 733 LNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999998888899999999999999999765 6899999999999886543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=266.13 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=250.4
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.||++|+ ++++++|..|+++|.+|+..+++++..+++.|+||.|+.+|.++++++++.|+++|.||+.+ +..+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 578999999997 55689999999999999999999999999999999999999999999999999999999987 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcchHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 620 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~k~~I-~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..+.+.|++++|+.+|...+ ...+.+++++|.+++........+ ...++++.|+.+|.+.+++++..|+++|.+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999998654 457889999999999876554443 345899999999999999999999999999
Q ss_pred chhcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003339 694 LSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
|+....++ ..+++.|+++.|+.+| +.+..++..++.+|+||+. .+..+..+.+.|+++.|+.+|.+.++.+++.|++
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 99866554 5567899999999999 5778899999999999988 5566788899999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+|.||+.++......+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998865
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-26 Score=264.00 Aligned_cols=278 Identities=20% Similarity=0.229 Sum_probs=251.7
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.|+++|+ +.++++|..|+++|.+++..+++++..+++.|+||.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 578999999997 55699999999999999999999999999999999999999999999999999999999976 5689
Q ss_pred HHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcchHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 620 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~k~~I-~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..+.+.|++++|+.+|..++ ...+.+++++|.+++........+ ...++++.|+.+|.+++++++.+|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 457889999999999876554433 345899999999999999999999999999
Q ss_pred chhcchh-HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003339 694 LSIYHEN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n-~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
|+..... ...++..|+++.|+.+| +++..++..|+.+|.||+. .++.+..+.+.|+++.|+.++.+.++.++..|++
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 9996654 45677899999999999 6778899999999999988 5566788899999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+|.+|+.++......+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998865
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=263.81 Aligned_cols=279 Identities=21% Similarity=0.261 Sum_probs=237.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.|+.||++|++++.++|..|++.|++|+.. +.+||..|++.|+||.|+.+|.+ .+.+++++|+.+|.||+.++.+|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 57899999999999999999999999999995 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhc------------------CCCHHHHHHHHHHHHHhccCcc-hHHHHHhh-CChHHHHHhhcC-
Q 003339 620 SAIANANAIEPLIHVLQ------------------TGSPEARENAAATLFSLSVIED-NKIKIGRS-GAIGPLVDLLGN- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~------------------s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~-g~I~~Lv~LL~s- 678 (828)
..|++ +++++|+++|. ..+..++++|+++|+||+...+ ++..|.+. |+++.|+.+|++
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99995 67999999871 2247899999999999998764 48777775 656677666542
Q ss_pred -------------------------------------------------------------------------CCHHHHH
Q 003339 679 -------------------------------------------------------------------------GTPRGKK 685 (828)
Q Consensus 679 -------------------------------------------------------------------------~~~~~~~ 685 (828)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 2344556
Q ss_pred HHHHHHHHchhcc-----hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003339 686 DAATALFNLSIYH-----ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 686 ~Al~aL~nLs~~~-----~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.|++||.|||... .++..+.+.|+++.|++|| ..+..++..|+++|.||+.++..+..| ..|+++.|+.+|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 6667777776532 2233344578999999999 677889999999999999998888777 67899999999987
Q ss_pred C--------CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcccc
Q 003339 760 G--------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 760 ~--------s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~~ 822 (828)
+ +..+...|+++|.||+..+++..+.+.+.|+++.|+.|+.++ .+++++.|..+|..|..+.+
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 5 578899999999999999999999999999999999999987 78999999999999987654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=262.20 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=243.7
Q ss_pred hhhHHHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH----------HHHHHHHcCCC
Q 003339 541 IETQVRKLVEDLKS------------TSLDTQREATAELRLLAKHNMDNRMVIANCGAI----------NILVDMLHSSE 598 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s------------~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI----------~~Lv~lL~s~d 598 (828)
..+.++.||++|+. ++++.|.+|++.|.+++...++......+.|++ +.++.++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 36789999999995 337999999999999999998888888888888 66677776542
Q ss_pred --HH-----HHH-------HHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHh
Q 003339 599 --TK-----IQE-------NAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-----------GSPEARENAAATLFSL 653 (828)
Q Consensus 599 --~~-----v~e-------~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s-----------~~~e~~~~Aa~aL~nL 653 (828)
.+ +.+ +|+++|.|++.++.+|..|++.|++++|+.+|.. .+..++.+|+++|.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 444 9999999999999999999999999999999952 2367899999999999
Q ss_pred ccCcc-hHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhc--chhHHHHHHhCcHHHHHHhc-C-CChHHHHHH
Q 003339 654 SVIED-NKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-PAAGMVDKA 727 (828)
Q Consensus 654 S~~~e-~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~--~~n~~~iv~~G~V~~Ll~LL-~-~~~~v~~~A 727 (828)
+..++ +|..+... |+|+.|+.+|+++++.++..|+++|.||+.. .+++..+++.|+|+.|+++| . .+..+++.|
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 98765 67777654 7799999999999999999999999999984 57899999999999999975 3 567889999
Q ss_pred HHHHHHHhC-CchhHHHHH-hCCcHHHHHHHHccCCH----HHHHHHHHHHHHHhh---CCHHhHHHHHhCCCHHHHHHh
Q 003339 728 VAVLANLAT-IPDGRVAIG-QENGIPVLVEVVELGSA----RGKENAAAALLQLCT---NSSRFCSMVLQEGAVPPLVAL 798 (828)
Q Consensus 728 l~~LanLa~-~~e~r~~i~-~~g~I~~Lv~lL~s~s~----~~ke~Av~~L~~L~~---~~~~~~~~v~~~g~v~~L~~L 798 (828)
+.+|+||+. +++++..|. ..|+++.|+++|.++++ .++++|+++|+||+. .+++.++.+.+.|+++.|+.+
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 999999999 778888887 68999999999987654 589999999999997 688889999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 003339 799 SQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 799 L~~g~~r~r~kA~~lL~~L~~ 819 (828)
+.+++..+++.|.++|.+|..
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHS
T ss_pred HcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999974
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=252.36 Aligned_cols=240 Identities=21% Similarity=0.265 Sum_probs=216.5
Q ss_pred hhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHH
Q 003339 542 ETQVRKLVEDLKS-----------TSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTAL 609 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-----------~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL 609 (828)
.+.++.|+.+|.+ .++++|..|++.|++|++.+..+|..+.. .|+||.|+.+|.++++++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678889988852 24678999999999999988889988865 46799999999999999999999999
Q ss_pred HHhhcC--CccHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcc-CcchHHHHH-hhCChHHHHHhhcCCCH---
Q 003339 610 LNLSIN--DNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSV-IEDNKIKIG-RSGAIGPLVDLLGNGTP--- 681 (828)
Q Consensus 610 ~nLs~~--~~~k~~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~-~~g~I~~Lv~LL~s~~~--- 681 (828)
.||+.. +.+|..|.+.|+|++|+++ +++++.++++.|+.+|+||+. .+++|..|+ ..|+++.|+.+|.++++
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999975 4689999999999999997 467789999999999999998 668899998 57999999999998754
Q ss_pred -HHHHHHHHHHHHchh----cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHH
Q 003339 682 -RGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLV 754 (828)
Q Consensus 682 -~~~~~Al~aL~nLs~----~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv 754 (828)
.+++.|+++|.||+. +++++..+++.|+++.|+.+| +.+..+++.|+++|+||+. +++++..+.+.|+|+.|+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 589999999999996 788999999999999999999 5678899999999999995 789999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003339 755 EVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
++++++++.+++.|+++|.+|+.+.+.
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=248.91 Aligned_cols=279 Identities=23% Similarity=0.252 Sum_probs=254.2
Q ss_pred hhHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~-~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|+++|++++ +.+|..|++.|.+++..+++++..+.+.|+|+.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999886 99999999999999998899999999999999999999999999999999999999876 4568
Q ss_pred HHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 620 SAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
..+.+.|++++|+.+| .+.+..++.+++++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999 567899999999999999987555445556899999999999999999999999999999866
Q ss_pred hhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHH
Q 003339 699 ENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQ 774 (828)
Q Consensus 699 ~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L~~ 774 (828)
+.+ ..+++.|+++.|+.+| +++..++..|+++|.+|+. .+..+..+.+.|+++.|+.+|.++ ++.++..|+++|.+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 554 5778899999999999 5678899999999999998 566778889999999999999998 99999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|+.+++.....+++.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888899999999999999999999999999999998764
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=222.52 Aligned_cols=238 Identities=29% Similarity=0.382 Sum_probs=221.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~ 621 (828)
+.++.|++.|+++++++|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3589999999999999999999999999998888999999999999999999999999999999999999987 778999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-ch
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~-~~ 699 (828)
+.+.|+++.|+.+|++++.+++..|+++|.+|+ ..++++..+.+.|+++.|+++|+++++.++..|+++|.||+.. ++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5678888999999999999999999999999999999999984 55
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
++..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 667889999999999999 5678899999999999998 66678888999999999999999999999999999999998
Q ss_pred CCH
Q 003339 778 NSS 780 (828)
Q Consensus 778 ~~~ 780 (828)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 754
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=220.78 Aligned_cols=240 Identities=25% Similarity=0.340 Sum_probs=223.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~-~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~ 662 (828)
|+|+.|+.+|.+++++++..|+++|.+++... .++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 78999999999999999999999999998765 4889999999999999999999999999999999999987 788999
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cch
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPD 739 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e 739 (828)
+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++..+++.|+++.|+++| +++..++..|+++|.+|+. .++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 778899999999999999999 5678899999999999998 445
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56888899999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred ccccc
Q 003339 820 QRHGN 824 (828)
Q Consensus 820 ~~~~~ 824 (828)
...+.
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 76544
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=245.86 Aligned_cols=278 Identities=19% Similarity=0.228 Sum_probs=248.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~ 616 (828)
.+.|+.|+.+|.+++.+++..|++.|.+|+.+++++|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999997653 457889999999999875
Q ss_pred cc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 617 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. .......++++.|+.+|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43 33344568999999999999999999999999999986654 45566779999999999999999999999999999
Q ss_pred hh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003339 695 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 695 s~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
+. ++..+..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 87 456778889999999999999 6778899999999999998 56667888999999999999999999999999999
Q ss_pred HHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 772 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 772 L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
|.|++.+ +.+.+..+++.|++++|+.++.+.+++++..+...|.++..
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999875 56777889999999999999999999999999998887754
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=244.76 Aligned_cols=278 Identities=19% Similarity=0.236 Sum_probs=247.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~ 616 (828)
.+.|+.|+++|++++.+++..|++.|.+|+.+++.+|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999999999999999999998754 457889999999999875
Q ss_pred cc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 617 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. .......++++.|+.+|.+++.+++..|+++|.+|+.....+ ..+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 44 333445689999999999999999999999999999876554 5566779999999999999999999999999999
Q ss_pred hh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003339 695 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 695 s~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
+. ++.++..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 87 456777889999999999999 5778899999999999998 56678888999999999999999999999999999
Q ss_pred HHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 772 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 772 L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
|.|++.+ +.+.+..+++.|++++|+.++.+.+++++..+.+.|.++-.
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999985 46677889999999999999999999999999998887654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=243.25 Aligned_cols=277 Identities=19% Similarity=0.180 Sum_probs=250.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhcC-CccH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~GaI~~Lv~lL~s~d-~~v~e~A~~aL~nLs~~-~~~k 619 (828)
..++.|++.|.++++++|..|+..|+.++.... .+...+.+.|+||.|+.+|.+++ +.++..|+++|.+++.+ +.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999966544 67888899999999999999876 99999999999999876 6788
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~~ 697 (828)
..+++.|+++.|+.+|.+++..+++.|+++|.+|+.. +.++..+...|+++.|+.+| .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999975 55688888889999999999 566899999999999999997
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
..........|+++.|+.+| +.+..++..|+++|.+|+.....+ ..+.+.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 65555566799999999999 677889999999999999966554 6778899999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003339 776 CTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
+.+.+.....+++.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988888999999999999999999 89999999999999975
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=242.42 Aligned_cols=279 Identities=20% Similarity=0.211 Sum_probs=253.9
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ ++.+|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999987 899999999999999998888999999999999999999999999999999999999876 4678
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~- 697 (828)
..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999999999999999999999765 4444555679999999999999999999999999999985
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
++....+++.|+++.|+.+| +.+..++..|+.+|.+|+. .+.....+.+.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45677788899999999999 6778899999999999998 456677788899999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+.+++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 998888888888999999999999999999999999999988653
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=224.06 Aligned_cols=234 Identities=22% Similarity=0.323 Sum_probs=215.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I 622 (828)
..+.+++.|+++++++|..|++.|+.+...+..++..+.+.|+|+.|+.+|.++++.++..|+++|.|++. ++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47899999999999999999999977655577889999999999999999999999999999999999997 57789999
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchh
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 700 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n 700 (828)
.+.|+++.|+.+|++++..++..|+++|.+|+..++.+ ..+.+.|+++.|+.+|++++..++..|+++|.||+. .+++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999998888 888888999999999999999999999999999998 4567
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 701 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77888999999999999 6678899999999999996 66778889999999999999999999999999999999985
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=230.27 Aligned_cols=276 Identities=21% Similarity=0.215 Sum_probs=248.9
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHH
Q 003339 543 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~-~~k~ 620 (828)
+.++.|++.|+++ ++.+|..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.+++.|+++|.+++.+. ..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 8999999999999999988888888889999999999999999999999999999998764 5788
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
.+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... ..+..+. .++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999999753 2333332 68999999999999999999999999999985
Q ss_pred -chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 698 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 -~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
++++..++..|+++.|+.+| +++..++..|+++|.+|+... +.+..+.+.|+++.|+.++.+.++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777788999999999999 677889999999999999854 456677888999999999999999999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
++.+++...+.+++.|+++.|+.++.++++++|+.|.++|.+|..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888888899999999999999999999999999998865
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=217.22 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=218.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~ 662 (828)
..++.++.+|.+++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++.+++..|+++|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5689999999999999999999999775 4556678889999999999999999999999999999999998 6788999
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cch
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPD 739 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e 739 (828)
+.+.|+++.|+.+|+++++.++..|+++|.||+.+.+++ ..+++.|+++.|+.+| +++..++..|+++|.+|+. .++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 8899999999999999 6678899999999999998 556
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999999999999998888999999999999999999999999999999998864
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=236.08 Aligned_cols=278 Identities=21% Similarity=0.227 Sum_probs=250.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC-Ccc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSIN-DNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~-~~~ 618 (828)
...++.|++.|+++++++|..|+..|+.+... ...++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.+ +..
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34689999999999999999999999998654 345677888999999999999987 899999999999999875 456
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
+..+++.|+++.|+.+|++++..+++.|+++|.+|+.. ++++..+...|+++.|+.+|.+.+..++..|+++|.||+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999986 56788888889999999999999999999999999999986
Q ss_pred c-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 698 H-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
. .........|+++.|+.+| +.+..++..|+++|.+|+.. ++....+.+.|+++.|+.++.+.++.+++.|+++|.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 5 5555667799999999999 56788999999999999985 5667888889999999999999999999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
++.+++.....+++.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999988888888999999999999999999999999999999875
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=226.75 Aligned_cols=278 Identities=20% Similarity=0.207 Sum_probs=248.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCC--cc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIND--NN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~--~~ 618 (828)
.+.++.|++.|+++++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999999888899999999999999999996 68999999999999998653 33
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
+..++ .++++.|+.+|.+++..++..++++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 32333 789999999999999999999999999999854 5666777789999999999999999999999999999986
Q ss_pred ch-hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003339 698 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~~-n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.+ ....+++.|+++.|+.+| +++..++..|+++|.+|+. +++....+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 455678899999999999 5678899999999999997 66777888889999999999999999999999999999
Q ss_pred HhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 775 LCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 775 L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
++.+ +++....+++.|+++.|+.++..+++++++.|.++|..|...
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9986 566777788899999999999999999999999999887653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-22 Score=228.11 Aligned_cols=278 Identities=21% Similarity=0.219 Sum_probs=240.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|+++++.+|..|+..|.+|+..+ .++..+... |+++.|+.+|.+ ++++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 467999999999999999999999999999854 577666654 999999999975 48999999999999999988899
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 5667788888999999999999999999999999999988 5
Q ss_pred chhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHH---------------------
Q 003339 698 HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV--------------------- 754 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv--------------------- 754 (828)
++++..+++.|+++.|+.+| .........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 78888888999999999988 3445566778888999998888888887777665554
Q ss_pred ------------------HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 003339 755 ------------------EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 814 (828)
Q Consensus 755 ------------------~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL 814 (828)
+++.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. .+.+++.|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556778888899999999888888889999999999999999863 378999999999
Q ss_pred HHhhcc
Q 003339 815 SYFRNQ 820 (828)
Q Consensus 815 ~~L~~~ 820 (828)
.+|...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=225.70 Aligned_cols=279 Identities=24% Similarity=0.253 Sum_probs=243.4
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ +++++..|+..|++|+.. ++++..+.+.|+||.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46899999999754 899999999999999985 56999999999999999999999999999999999999876 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+.+.|+++.|+.+|++++ ...+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999997 5788999999999999999998774 55666788899999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-C---------------------------------------CChHHHHHHHHHHHHHhCC
Q 003339 698 HENKARIVQAGAVKHLVDLM-D---------------------------------------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~---------------------------------------~~~~v~~~Al~~LanLa~~ 737 (828)
++++..+++.|+++.|+.++ + .+..++..|+++|.+|+.+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999888877666 2 2455667788888888874
Q ss_pred -chhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHH---hHHHHHhCCCHHHHHHhhcCCC-HHHHHHH
Q 003339 738 -PDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGT-PRAKEKA 810 (828)
Q Consensus 738 -~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~---~~~~v~~~g~v~~L~~LL~~g~-~r~r~kA 810 (828)
++.+..+.+.|+++.|++++.+ .++.+++.|+.+|.+|+.+++. .+..+.+.|+++.|+.++.++. +.+++.|
T Consensus 297 ~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 4688899999999999999975 3489999999999999987543 4678889999999999999987 5899999
Q ss_pred HHHHHHhhccc
Q 003339 811 QALLSYFRNQR 821 (828)
Q Consensus 811 ~~lL~~L~~~~ 821 (828)
.++|+++....
T Consensus 377 ~~~l~nl~~~~ 387 (529)
T 1jdh_A 377 VGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHTTSG
T ss_pred HHHHHHHhcCh
Confidence 99999987643
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=233.23 Aligned_cols=277 Identities=21% Similarity=0.212 Sum_probs=245.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|++.++.+|..|+..|.+|+... .++..+... |+++.|+.+|.+. +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467999999999999999999999999999966 477766654 9999999999875 8999999999999999988899
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|++++..++..|+.+|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999986 4667778888999999999999999999999999999997 7
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH-------------------
Q 003339 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------------- 756 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l------------------- 756 (828)
.+++..+++.|+++.|+.+|. ....++..++.+|.+|+.+++.+..+++.|+++.|+.+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999993 33567788999999999999999999888877766554
Q ss_pred --------------------HccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-C-HHHHHHHHHHH
Q 003339 757 --------------------VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-T-PRAKEKAQALL 814 (828)
Q Consensus 757 --------------------L~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~-~r~r~kA~~lL 814 (828)
+.+.++.+++.|+++|.+|+.+++..+..+.+.|+++.|+.++.+. + +.++..|..+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 4456778888888888888888877888899999999999999874 3 78999999999
Q ss_pred HHhhc
Q 003339 815 SYFRN 819 (828)
Q Consensus 815 ~~L~~ 819 (828)
.+|..
T Consensus 332 ~nL~~ 336 (644)
T 2z6h_A 332 RHLTS 336 (644)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 99965
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=206.64 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=175.3
Q ss_pred hHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 543 TQVRKLVEDLKSTSL--DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~--~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
..++.|+++|+++++ ++|..|+..|++|++.++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+.+ +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458999999999988 8899999999999999999999999999999999999999999999999999999974 7899
Q ss_pred HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc----------------CCCHH
Q 003339 620 SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------------NGTPR 682 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----------------s~~~~ 682 (828)
..|++.|+|++|+++|+ +++.+++++|+++||+||..+++|..|++. ++++|++++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 578999999999999999999999999875 6999999763 12569
Q ss_pred HHHHHHHHHHHchh-cchhHHHHHH-hCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCC
Q 003339 683 GKKDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 683 ~~~~Al~aL~nLs~-~~~n~~~iv~-~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~ 737 (828)
++.+|..+|+||+. +.++|..|.+ .|+|+.|+.+++ .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998 5589999987 478999999982 2457899999999999974
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-21 Score=227.53 Aligned_cols=279 Identities=24% Similarity=0.251 Sum_probs=243.6
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ ++++|..|+..|+.|+.. .+++..+.+.|+|+.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47799999999865 899999999999999995 56999999999999999999999999999999999999876 5667
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++...+..++.+|.+|+. +++++..+.+.|+++.|+.+|++.+ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999888899999999996 7888999999999999999999874 67788999999999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-C---------------------------------------CChHHHHHHHHHHHHHhCC
Q 003339 698 HENKARIVQAGAVKHLVDLM-D---------------------------------------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~---------------------------------------~~~~v~~~Al~~LanLa~~ 737 (828)
.+++..+++.|+++.|+.++ + .+..+++.|+++|.+|+..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999888887765 2 3455667788888888874
Q ss_pred -chhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH---HhHHHHHhCCCHHHHHHhhcCCC-HHHHHHH
Q 003339 738 -PDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS---RFCSMVLQEGAVPPLVALSQSGT-PRAKEKA 810 (828)
Q Consensus 738 -~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~---~~~~~v~~~g~v~~L~~LL~~g~-~r~r~kA 810 (828)
++.+..+.+.|+++.|+.++.+. .+.+++.|+.+|.+|+...+ ..+..+...|+++.|+.++.+.+ +.+++.|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 46788889999999999999863 37999999999999998644 23455788999999999999885 6899999
Q ss_pred HHHHHHhhccc
Q 003339 811 QALLSYFRNQR 821 (828)
Q Consensus 811 ~~lL~~L~~~~ 821 (828)
.++|.+|....
T Consensus 374 ~~~L~nLa~~~ 384 (644)
T 2z6h_A 374 VGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHTTSG
T ss_pred HHHHHHHccCH
Confidence 99999987643
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-21 Score=224.34 Aligned_cols=279 Identities=16% Similarity=0.161 Sum_probs=237.3
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh-------------------------------------h-hHHHHH
Q 003339 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNM-------------------------------------D-NRMVIA 582 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~-------------------------------------~-nr~~i~ 582 (828)
.++++.|++.++. .+..+...++..|.+|+...+ + ++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 5678889999984 666778888888888887332 1 567788
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHH---HHHHHHHHHHHhccCcch
Q 003339 583 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE---ARENAAATLFSLSVIEDN 659 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e---~~~~Aa~aL~nLS~~~e~ 659 (828)
++|+||.|+.++.+.++.+++.|+++|.||+.++.+|..+++.|++++|+.+|.+++.. .+.+|+.+|.+|+...+.
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 89999999999999999999999999999999999999999999999999999998655 899999999999977666
Q ss_pred HHHHHh---hCChHHHHHhhcCC--CH------------HHHHHHHHHHHHchhcc-----hhHHHHHHh-CcHHHHHHh
Q 003339 660 KIKIGR---SGAIGPLVDLLGNG--TP------------RGKKDAATALFNLSIYH-----ENKARIVQA-GAVKHLVDL 716 (828)
Q Consensus 660 k~~I~~---~g~I~~Lv~LL~s~--~~------------~~~~~Al~aL~nLs~~~-----~n~~~iv~~-G~V~~Ll~L 716 (828)
...+.. .|+|++|+.||..+ .. .-+..|+.||.||+..+ +.+.++++. |+++.|..+
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 665532 39999999999832 11 23779999999999976 347888985 999999999
Q ss_pred c-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCC------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003339 717 M-DPAAGMVDKAVAVLANLATIPDGR-VAIGQEN------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 717 L-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g------~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
| +++..++..|+++++||+.+++++ +.+.+.+ .++.|+.++.+++..+|..|+++|.+++..++..+..+++
T Consensus 615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8 667788999999999999999986 4554322 3889999999999999999999999999888878888888
Q ss_pred C-CCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcc
Q 003339 789 E-GAVPPLVALSQS--GTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 789 ~-g~v~~L~~LL~~--g~~r~r~kA~~lL~~L~~~ 820 (828)
. ++++.|+.+++. +++.++..+..++.+|...
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 6 899999999999 8899999999999999874
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=200.59 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=173.0
Q ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHH
Q 003339 586 AINILVDMLHSSET--KIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKI 661 (828)
Q Consensus 586 aI~~Lv~lL~s~d~--~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~ 661 (828)
.+|.|+.+|.++++ +++..|+++|.+|+. ++.++..|.+.|+|++|+.+|++++.++++.|+++|.||+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 899999999999985 56789999999999999999999999999999999999998 578999
Q ss_pred HHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC-----------------CChHH
Q 003339 662 KIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-----------------PAAGM 723 (828)
Q Consensus 662 ~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-----------------~~~~v 723 (828)
.|++.|+|+.|+++|+ +++..+++.|+.+|+||+..+++|..+++. +++.|+.++. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 578999999999999999999999999875 6999998651 14578
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHhC-CcHHHHHHHHcc------CCHHHHHHHHHHHHHHhhC
Q 003339 724 VDKAVAVLANLAT-IPDGRVAIGQE-NGIPVLVEVVEL------GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 724 ~~~Al~~LanLa~-~~e~r~~i~~~-g~I~~Lv~lL~s------~s~~~ke~Av~~L~~L~~~ 778 (828)
.+.|.++|+||+. ++++|..|.+. |+|+.|+.+++. .+.+.+|+|+.+|+|||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999998 67999999986 558999999975 2678999999999999975
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=228.49 Aligned_cols=275 Identities=25% Similarity=0.294 Sum_probs=244.7
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ +++++..|+..|++|+.. ..++..+.+.|+|+.|+.+|.+.++.++..|+++|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 46899999999854 899999999999999985 57899999999999999999999999999999999999876 5667
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..++..|+++.|+.+|++++ ...+..|+.+|.+|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 778889999999999999999999999999999987 5788999999999999999999875 45666889999999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
..++..+++.|+++.|+.++ +.+..++..|+++|.+|+...... ....++++.|+++|.+.++.+++.|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 567789999999999999855321 122457999999999999999999999999999
Q ss_pred hCCHHhHHHHHhCCCHHHHHHhhcC-CC-HHHHHHHHHHHHHhhc
Q 003339 777 TNSSRFCSMVLQEGAVPPLVALSQS-GT-PRAKEKAQALLSYFRN 819 (828)
Q Consensus 777 ~~~~~~~~~v~~~g~v~~L~~LL~~-g~-~r~r~kA~~lL~~L~~ 819 (828)
.+++..+..+.+.|+++.|+.++.. ++ ..+++.|..+|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9998888999999999999999987 33 4899999999999865
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=188.98 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=178.6
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchH
Q 003339 583 NCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNK 660 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k 660 (828)
..|+.+.|+.+|.++++.++..|+++|.+|+. ++.++..+.+.|+++.|+.+|++++..++..|+++|.+|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35899999999999999999999999999995 46778899999999999999999999999999999999995 66788
Q ss_pred HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-
Q 003339 661 IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI- 737 (828)
Q Consensus 661 ~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~- 737 (828)
..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++.+..+++.|+++.|+.+| +++..++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999997 456667889999999999999 56788999999999999996
Q ss_pred chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 738 PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7888889999999999999999999999999999999985
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=227.51 Aligned_cols=275 Identities=21% Similarity=0.214 Sum_probs=245.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|.+.++.+|..|+..|.+|+... .++..+... |+|+.|+.+|.+. ++.++..|+.+|.+|+.++.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 678999999999999999999999999999954 567777754 8999999999765 8999999999999999988889
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|++++..++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|++++..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999986 5667777788999999999999999999999999999997 6
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.+++..+++.|+++.|+.+|. ......+.++.+|.+|+.+++.+..+++.|+++.|+.++.+.+..+++.|+++|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 789999999999999999993 334566788999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+...... ....++++.|+.++.+.++.+++.|.++|..|...
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9876431 11246899999999999999999999999999764
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-20 Score=185.62 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=180.3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhH
Q 003339 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENK 701 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~ 701 (828)
..|+.+.|+.+|++++.+++..|+++|.+|+. .++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34788999999999999999999999999995 66778889999999999999999999999999999999996 67888
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 5778899999999999997 5566778899999999999999999999999999999999998
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+..+..+.+.|+++.|+.++.++++.+++.|.++|+.|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998864
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=192.93 Aligned_cols=96 Identities=29% Similarity=0.467 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 206 EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+.++++..++....+. .....+|++|.||||+++|+|||+++|||||||.||++||..++.+||+||++++
T Consensus 82 ~~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 82 KYLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3456666665554331 1245789999999999999999999999999999999999876558999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCC
Q 003339 286 HTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 286 ~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
..+|+||+.|+++|+.|+..||+.+
T Consensus 153 ~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 153 QDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred hhhCcchHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999864
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-21 Score=171.73 Aligned_cols=74 Identities=31% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003339 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999996 4789999999999999999999999999999875
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-21 Score=173.80 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCCCCCcccccCccccccCCeecCCC-cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 003339 233 PVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
...+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+||++++..+|+||+.|+++|+.|+.++++.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 45689999999999999999999999 99999999999986 478999999999999999999999999999999865
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=176.48 Aligned_cols=75 Identities=32% Similarity=0.406 Sum_probs=70.4
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003339 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
....+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 5789999999999999999999999999999886
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=205.35 Aligned_cols=277 Identities=14% Similarity=0.158 Sum_probs=229.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc-
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~- 617 (828)
+...++.+.+.|..++.+.+..|+..|..|+. +++.|..+++. |+++.|+.++.. .+..+..-++.+|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 45678889999998887779999999999998 45788888775 889999999985 788899999999999976321
Q ss_pred --------------------------------------cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch
Q 003339 618 --------------------------------------NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 659 (828)
Q Consensus 618 --------------------------------------~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~ 659 (828)
++..+.+.|++++|+.++++++..+++.|+++|.+|+.+.++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 344566789999999999999999999999999999999999
Q ss_pred HHHHHhhCChHHHHHhhcCCCHH---HHHHHHHHHHHchhcchhHHHHHH---hCcHHHHHHhcC--CChH---------
Q 003339 660 KIKIGRSGAIGPLVDLLGNGTPR---GKKDAATALFNLSIYHENKARIVQ---AGAVKHLVDLMD--PAAG--------- 722 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s~~~~---~~~~Al~aL~nLs~~~~n~~~iv~---~G~V~~Ll~LL~--~~~~--------- 722 (828)
|..+++.|+++.|+.+|.+++.. ++..|+.||.+|+...+....+-. .|+|++|+.||. +...
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999988644 899999999999875544433311 499999999995 2211
Q ss_pred ---H-HHHHHHHHHHHhCCc-----hhHHHHHhC-CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC---
Q 003339 723 ---M-VDKAVAVLANLATIP-----DGRVAIGQE-NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE--- 789 (828)
Q Consensus 723 ---v-~~~Al~~LanLa~~~-----e~r~~i~~~-g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~--- 789 (828)
+ ...|+.+|.|||..+ +.|..|+.. |+++.|.++|.+.+..+|..|+++|.||+.+.....+.+...
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 2 568999999999976 347888885 899999999999999999999999999998543211233322
Q ss_pred ---CCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 790 ---GAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 790 ---g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.++.|+.|+..++.++|+.|.++|.++.
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 23789999999999999999999999995
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=215.40 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Q 003339 142 YEQTSSLIKEAIRDQVDGVAPSSEILVKVAES----LSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTR 217 (828)
Q Consensus 142 ~e~~~~~~~~~l~~~~~~~~~~~~~l~~i~~~----l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (828)
.+.|...|. .|||+|+++.|.+.+.. .|+.+...+. ++..|.+.++++....+..+.
T Consensus 823 ~~~F~~aVa------~DgRSy~~elF~~a~~il~~~~~l~~~~~i~-~~~~l~~~~~~~~~~~~~~e~------------ 883 (968)
T 3m62_A 823 QSEFISAVA------KDERSFNRNLFVRAVDILGRKTGLASPEFIE-KLLNFANKAEEQRKADEEEDL------------ 883 (968)
T ss_dssp CHHHHHHHH------HCTTTCCHHHHHHHHHHHTTSTTSSCHHHHH-HHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChHHHHHHH------hcCCCCCHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHhhhc------------
Confidence 456666554 69999999999965543 3677776653 344444444332221111111
Q ss_pred HHHHHHHhhhhccCCCCCCCCcccccCccccccCCeecCCC-cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHH
Q 003339 218 MHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296 (828)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~ 296 (828)
...++|++|+|||++++|+|||++|+| +||||.+|++|+.. +.+||+||++|+..+++||++||
T Consensus 884 --------------~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk 948 (968)
T 3m62_A 884 --------------EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELR 948 (968)
T ss_dssp --------------HHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHH
T ss_pred --------------cccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHH
Confidence 113699999999999999999999998 79999999999987 47899999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 003339 297 ALIANWCELNNV 308 (828)
Q Consensus 297 ~~i~~~~~~~~~ 308 (828)
+.|++||.+++.
T Consensus 949 ~~I~~w~~~~~~ 960 (968)
T 3m62_A 949 QKILCFKKQKKE 960 (968)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-19 Score=155.07 Aligned_cols=76 Identities=57% Similarity=1.055 Sum_probs=72.1
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 003339 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
..+|++|.||||+++|+|||+++|||+||+.||.+|+..++.+||.||+++...+++||..|+++|+.|+++|++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999987788999999999999999999999999999999873
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=179.25 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhh
Q 003339 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL 676 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~-lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL 676 (828)
.+-+..|+..|.+++.+.++...+...|++++|+. +|++++..++..|+++|.+++.+ +..+..+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45677889999999888788888999999999999 99999999999999999999875 56788899999999999999
Q ss_pred cCC-CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHH
Q 003339 677 GNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPV 752 (828)
Q Consensus 677 ~s~-~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~ 752 (828)
+++ +..+++.|+++|.||+.+ +.....+++.|+++.|+.+| +.+..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 789999999999999985 55677888999999999999 6788999999999999988 6788999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC-CCH-H---HHHHhhc-CC-CHHHHHHHHHHHHHhhccc
Q 003339 753 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE-GAV-P---PLVALSQ-SG-TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 753 Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~-g~v-~---~L~~LL~-~g-~~r~r~kA~~lL~~L~~~~ 821 (828)
|+.+|.+.++.+++.|+.+|.+|+...+......... ..+ . .-.+-++ .. +....++|..++..+....
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999866444433221 112 1 1223344 23 4678899999999877543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=182.61 Aligned_cols=80 Identities=33% Similarity=0.466 Sum_probs=74.9
Q ss_pred CCCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 003339 231 CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 231 ~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
.....+|++|.||||+++|+|||+++|||||||.||++||..++.+||+|+++++..+++||..|+++|+.|+.+||+.+
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999999876779999999999999999999999999999999864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=177.45 Aligned_cols=182 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHH-hhcCCCHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHh
Q 003339 639 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDL 716 (828)
Q Consensus 639 ~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~L 716 (828)
+.+.+..|+..|.+++...+++..+...|+++.|+. +|.++++.++..|+++|.|++.+ +.++..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999998889999999999999999 99999999999999999999985 5678889999999999999
Q ss_pred cC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHH
Q 003339 717 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 793 (828)
Q Consensus 717 L~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~ 793 (828)
|. ++..++..|+++|.||+. ++.+.+.+.+.|+++.|+.+|.+++..++..|+++|.+|+.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 93 467899999999999997 567788899999999999999999999999999999999999888999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 794 PLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+|+.++.++++.+++.|..+|.+|...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999888654
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=155.18 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=65.8
Q ss_pred CCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-----CCCCCCCCCc---CCCCCCCCcHHHHHHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-----LFVCPKTRQT---LAHTTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-----~~~cP~t~~~---l~~~~l~pN~~l~~~i~~~~~~ 305 (828)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+||.+ +...+|+||..|+++|+.|++.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999863 3589995554 8899999999999999999988
Q ss_pred cCC
Q 003339 306 NNV 308 (828)
Q Consensus 306 ~~~ 308 (828)
++-
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 763
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=133.91 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=69.1
Q ss_pred CCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcC-CCCCCCCcHHHHHHHHHHHHHcCCC
Q 003339 233 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTL-AHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l-~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
...++++|.||||+++|.|||+++ |||+||+.||.+|+... ..+||.|++++ ....+.||..|+++|+.|...+++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 346889999999999999999999 99999999999999754 46899999997 5678999999999999999988653
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-16 Score=128.52 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=50.1
Q ss_pred cccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003339 239 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
.|.||||+++|+|||++ +|||+|||.+|++|+..+ .+||+||++|+.++|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 999999999999999875 5699999999999999985
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-15 Score=151.47 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCCcHHHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l~~~i~~~~~~ 305 (828)
...+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 56789999999999999985 999999999999999864 457999 99999999999999999999999764
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=134.57 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~~~~ 305 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 457899999999999999999999999999999999766689999999988 7899999999999988643
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-12 Score=145.41 Aligned_cols=272 Identities=20% Similarity=0.222 Sum_probs=216.1
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcC-Cc
Q 003339 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
.+.|+.|+..+++ .-.+.++.|+..|+.+++. .|..++ .++++.|+..|+. +|.++...++.+|.++... +.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5789999999984 4688899999999999884 444444 5789999999976 4889999999999887432 21
Q ss_pred c-----------------HHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-c-hHHHHHhh-CChHHHHHhh
Q 003339 618 N-----------------KSAI-ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D-NKIKIGRS-GAIGPLVDLL 676 (828)
Q Consensus 618 ~-----------------k~~I-~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e-~k~~I~~~-g~I~~Lv~LL 676 (828)
. ...+ .+.+.|+.|+.+|++.+-.+|.+++.+|..|+... + ++..|... ++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 1122 34589999999999999999999999999998743 3 67888865 9999999999
Q ss_pred cCCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHhC-CchhHHHHHhCCc
Q 003339 677 GNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENG 749 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~-----~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~ 749 (828)
.+....++..|+.+|.+|+..+.+.++++. +|+++.|+.++. ....+++.|+.+|.||.. ++.++..|.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999998877777776 699999999992 234688999999999999 5568888999999
Q ss_pred HHHHHHHHccCCH---------HHHHHHHHHHHHHhhCC------HHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHH
Q 003339 750 IPVLVEVVELGSA---------RGKENAAAALLQLCTNS------SRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQA 812 (828)
Q Consensus 750 I~~Lv~lL~s~s~---------~~ke~Av~~L~~L~~~~------~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~ 812 (828)
++.|..++..+.+ .....+..++.-|+..+ ..++..+.+.|+++.|++++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999975422 12223666677777652 34677888999999999998876 3567777776
Q ss_pred HHHHh
Q 003339 813 LLSYF 817 (828)
Q Consensus 813 lL~~L 817 (828)
++.-+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-14 Score=136.09 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC-CCCCcHHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVKALIANWCE 304 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pN~~l~~~i~~~~~ 304 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999998766899999999988 89999999999998863
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=123.00 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.|++++...++.||..++++|+.|.+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45678999999999999998 899999999999999864 68999999999999999999999999998765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-10 Score=133.90 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=214.7
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChh-----------------hH-HHHHhcCcHHHHHHHHcCCCHHH
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMD-----------------NR-MVIANCGAINILVDMLHSSETKI 601 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~-----------------nr-~~i~~~GaI~~Lv~lL~s~d~~v 601 (828)
...++.|+.-|+.+ +.+.-..++..|..+...+++ +. ..+.+.+.|+.|+.+|++.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 45678889988854 677777888888776554332 11 23345689999999999999999
Q ss_pred HHHHHHHHHHhhcCC-c-cHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhc
Q 003339 602 QENAVTALLNLSIND-N-NKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 602 ~e~A~~aL~nLs~~~-~-~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~ 677 (828)
+.+++..|..|+.+. . .+..|... ++++.|+.+|++....+|-.++..|.+|+.... .++.+...|+++.|+++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 999999999997653 3 68888855 999999999999999999999999999998655 4666666799999999998
Q ss_pred CCC----HHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhcCCCh--------HH--HHHHHHHHHHHhCCc----
Q 003339 678 NGT----PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMDPAA--------GM--VDKAVAVLANLATIP---- 738 (828)
Q Consensus 678 s~~----~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL~~~~--------~v--~~~Al~~LanLa~~~---- 738 (828)
... ..+..+|+.+|.||..+ ..|+..+.+.|+++.|..+|+.+. .+ +..++.++..|+...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 653 37889999999999994 569999999999999999984211 11 223777888887731
Q ss_pred ---hhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHHhHHHHHhCC---------CHHHHHHhhcCC-C
Q 003339 739 ---DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQEG---------AVPPLVALSQSG-T 803 (828)
Q Consensus 739 ---e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g---------~v~~L~~LL~~g-~ 803 (828)
.++.++.+.|+++.|++++.+. ...++..|..++..++++++..+..+.+.. ++..|+.++.+. .
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 3467889999999999998764 788999999999999999998888877643 233344445444 3
Q ss_pred HHHHHHHHHHHHHhh
Q 003339 804 PRAKEKAQALLSYFR 818 (828)
Q Consensus 804 ~r~r~kA~~lL~~L~ 818 (828)
..+|-.|..+++.+-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677877777877654
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-13 Score=119.77 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCCcccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003339 236 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.+++.||||+++|.+||+ ++|||+||+.||.+|+.....+||.||.++...++++|+.+..+++...+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 3478899999999999999 9999999999999999987678999999999999999999999888876654
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-13 Score=120.85 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC----CCCCcHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANWC 303 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~i~~~~ 303 (828)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|+.++... .+.+|..|+++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56889999999999999997 999999999999999875 7799999999876 7889999999999873
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-14 Score=119.98 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=57.2
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC------CCCCCCCCCcCCCCCCCCcHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG------LFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
.+.+++.||||++.|.+||+++|||+||+.||.+|+... ..+||.||+++...++.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 467899999999999999999999999999999999863 5679999999999899999776544
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-13 Score=116.86 Aligned_cols=65 Identities=28% Similarity=0.457 Sum_probs=57.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC-----CCCCCCCCCcCCCCCCCCcHHHHHH
Q 003339 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
..+.+++.||||++.|.+||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 3467899999999999999999999999999999999872 5679999999999999999776544
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-12 Score=122.12 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=62.7
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
.++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.||.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57789999999999999999999999999999999998766899999999999999999999888754
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-13 Score=123.17 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.++|.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.||+.|+++++.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 34689999999999999999 9999999999999997 57999999999899999999999999997654
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-12 Score=118.93 Aligned_cols=64 Identities=14% Similarity=0.375 Sum_probs=52.8
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHH
Q 003339 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 303 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~ 303 (828)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||.||+++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 3578899999999999999999999999999999864 6799999998654 24555666666554
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=128.45 Aligned_cols=69 Identities=22% Similarity=0.430 Sum_probs=61.9
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCE 304 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~~~ 304 (828)
+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.|+.++.. ..+.||..|+++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999997 9999999999999999877889999999854 579999999999999854
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=112.40 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 299 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i 299 (828)
...+++.||||++.|.+||+++|||+||+.||.+|+... .+||.|++++. ..+.||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc-ccCCcHHHHHHHH
Confidence 356789999999999999999999999999999999864 67999999997 6788996655444
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-13 Score=122.07 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=62.2
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-------CCCCCcHHHHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-------TTLIPNYTVKALIANWC 303 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pN~~l~~~i~~~~ 303 (828)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|..+|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998777789999999864 67888999999999985
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-13 Score=115.84 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=57.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003339 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL-----GLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|++++...++.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 346789999999999999999999999999999999986 35679999999999999999776543
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=108.43 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=51.2
Q ss_pred CCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcCC-CCCCCCc
Q 003339 233 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLA-HTTLIPN 292 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~-~~~l~pN 292 (828)
.-.+++++.||||+++|.|||+++ |||+||+.||.+|+... ..+||.||+++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 99999999999999864 367999999854 4566666
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=104.96 Aligned_cols=55 Identities=7% Similarity=0.276 Sum_probs=49.8
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.||+++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4678999999999999999999999999999999997666789999999887654
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-12 Score=117.44 Aligned_cols=68 Identities=18% Similarity=0.376 Sum_probs=59.9
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003339 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
.+++.||||++.|.+||+++|||+||+.||.+|+..+ ..+||.|++++....+.+|..+.++++.+.+
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999864 3579999999999999999887777777654
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=104.53 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=52.5
Q ss_pred CCCCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 234 VPIPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
-.+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.||+++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccccc
Confidence 3467899999999999999997 999999999999999874 679999999999888876
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-10 Score=111.85 Aligned_cols=188 Identities=22% Similarity=0.254 Sum_probs=158.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4568999999999999999999999987643 368999999999999999999999998874
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..++++.|+.+|.+++..++..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 2467899999999999999999999999874 24678999999999999999999999998742
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
...++.|+.++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35788999999 6778889999999998853 3467889999999999999999999999887654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-10 Score=116.71 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=160.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++........
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 458899999999999999999999998752 2478999999999999999999999998864332111
Q ss_pred HHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 623 ANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv-~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..++.|. .++++++..++..++.+|..+...... ....+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1233333 245678899999999999988532110 012457888889999899999999999988743
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.++++.|+.++ +++..++..|+.+|..+.... ...++.|+.++.+.++.++..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 35788888888 667778888888888875321 1356788888888888899999888887752
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
..+++.|+.++.+++ ++..|...|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 234555555555433 444444444433
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.9e-10 Score=111.22 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=158.7
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003339 584 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 584 ~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+.+|.+++..++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4689999999999999999999999987742 368999999999999999999999998874
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003339 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
..++++.|+.+|.+.++.++..|+.+|..+.. .+.++.|+.+| +++..++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24678999999999999999999999998743 46789999998 6778899999999998853
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccc
Q 003339 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~ 822 (828)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3478999999999999999999999999853 2467889999999999999999999998877543
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=102.80 Aligned_cols=55 Identities=20% Similarity=0.606 Sum_probs=49.1
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCCCCcCCCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l 289 (828)
.+++++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.||+++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999999973 45679999999887654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-09 Score=107.95 Aligned_cols=184 Identities=22% Similarity=0.250 Sum_probs=158.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+..+.+++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999987643 3579999999999999999999999988742
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..+++.|+..|.++++.++..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 367899999999999999999999999874 23688999999999999999999999998742
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
.+.++.|+.++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56888999999 6778889999999998832 236888999999999999999999987754
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=100.41 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=50.2
Q ss_pred CcccccCccc-cccCC----eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 238 SDFCCPLSLE-LMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+..+||.||.++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998776789999999999888876
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-11 Score=114.27 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC-CcHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIAN 301 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~i~~ 301 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++...++. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999998667899999999988776 45666666543
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-11 Score=120.73 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=62.0
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN 301 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 301 (828)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++....+.||..+++.|..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 5788999999999999999999999999999999998766689999999999999999999888864
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.6e-12 Score=119.87 Aligned_cols=66 Identities=11% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC---------CCCCCCcHHHHHHHH
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA---------HTTLIPNYTVKALIA 300 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pN~~l~~~i~ 300 (828)
.++++|.||||+++|++||+++|||+||+.||.+|+..+..+||.||+++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999877668999998753 235668888887775
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-09 Score=107.83 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=158.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+..|.+++..++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 578899999999999999999999987742 367999999999999999999999998774
Q ss_pred hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH
Q 003339 665 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 665 ~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
...+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+| +++..++..|+.+|..+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23679999999999999999999999998643 35788899998 6778899999999998753
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..++.++++.+|..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999832 2 367888899999999999999999988754
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-11 Score=96.43 Aligned_cols=46 Identities=24% Similarity=0.653 Sum_probs=41.8
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 280 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 280 (828)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 45679987
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-11 Score=99.74 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=52.3
Q ss_pred CCCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003339 235 PIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 456789999999999999 889999999999999999876 6899999999998888763
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-08 Score=107.27 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=156.8
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHH
Q 003339 582 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661 (828)
Q Consensus 582 ~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~ 661 (828)
...+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|.+++..++..|+.+|..+...+....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 44578999999999999999999999999885 13578899999999999999999999998864332211
Q ss_pred HHHhhCChHHHHH-hhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch
Q 003339 662 KIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 739 (828)
Q Consensus 662 ~I~~~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e 739 (828)
..++.|.+ ++.+.++.++..|+.+|.++...... ....+++.|+.+| +++..++..|+.+|..+..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 12334442 45678999999999999998742211 1235678888888 6778888999999987653
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
...++.|+.++.+.++.++..|+++|..+....+ .+++.|..++.++++.+|..|...|..+.
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999865443 35688899999999999999999998775
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-10 Score=98.61 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=48.1
Q ss_pred CCCCCcccccCccccccC----CeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCC
Q 003339 234 VPIPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHT 287 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~ 287 (828)
-.+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356788999999999999 9999999999999999999874 46799999988764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=131.15 Aligned_cols=272 Identities=15% Similarity=0.077 Sum_probs=194.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...++.|++.+++.+++++..|+..|..+....+. .+.. .+.++.|+.++.++++.++..|+.+|.+++......
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 56788999999999999999999999988765432 1211 257888999999999999999999999997532111
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhh-----------cC--------
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLL-----------GN-------- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL-----------~s-------- 678 (828)
-.-.-.+.++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 0000124677888888888899999999999999876544443322 14566666666 22
Q ss_pred ---CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHH
Q 003339 679 ---GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 754 (828)
Q Consensus 679 ---~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv 754 (828)
.+..+++.|+.+|..|+..... . +-..+++.+..++ +++..+++.|+.+|..++........-.-.+.++.|+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--E-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--G-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1224688899999998764321 1 2234667777777 5678899999999999998544221112245689999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 755 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+.+.++.++..|+++|.+++...+.......-.++++.|+..+.++++++|+.|.+.|..+..
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887432111011113567888888988899999999999988764
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-10 Score=90.76 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=41.5
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 280 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 280 (828)
.+.+++.||||++.|++||+++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999875 55679987
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-10 Score=95.88 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
...+++.||||++.|.+||+++|||+||+.||.+|+..+ .+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 345789999999999999999999999999999999875 6799999988754
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-10 Score=94.62 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=48.8
Q ss_pred CcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 238 SDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+++.||||++.|.+| ++++|||+|++.||.+|+... .+||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCccceeee
Confidence 568899999999998 789999999999999999874 689999999998887765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=8e-09 Score=126.74 Aligned_cols=273 Identities=16% Similarity=0.113 Sum_probs=195.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH--HH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV--IA--NCGAINILVDMLHSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~--i~--~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
+.+.++.|++.+.++++..+..++..|..++...+..... +. -...++.|+.++.++++.++..|+.+|.++....
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999998754322110 00 1246778888888899999999999998776432
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.....-.-...++.|+.++.+++..++..|+.+|..|+..... .+.. .++++.++.++++.++.++..|+.++.++
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 2111101125778888899999999999999999998763221 1211 25788888889988999999999999999
Q ss_pred hhcchhHHHHHH---hCcHHHHHHhc-----------CC------------ChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003339 695 SIYHENKARIVQ---AGAVKHLVDLM-----------DP------------AAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 695 s~~~~n~~~iv~---~G~V~~Ll~LL-----------~~------------~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
+.....+. .+. ..+++.|+..+ .. +..++..|..+|..|+.... ..+. ..
T Consensus 284 ~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PH 359 (852)
T ss_dssp TTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred hcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HH
Confidence 87543332 222 35667777665 11 11345667777777775321 1122 13
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.++.+.+++.+.++..|+.|+.+|.+++.+.++.... .-.++++.|+.++.+.++++|..|.++|..+...
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5778888888899999999999999999887643222 2246789999999999999999999999887664
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-10 Score=91.83 Aligned_cols=52 Identities=15% Similarity=0.438 Sum_probs=46.6
Q ss_pred CCCCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 234 VPIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
..+++++.||||++.|.+| |+++|||+||+.||.+|+... .+||.||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccCc
Confidence 3467889999999999999 889999999999999999874 689999998864
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=93.53 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCCcccccCccccc--cCCeecC--CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003339 235 PIPSDFCCPLSLELM--TDPVIVA--SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm--~dPV~~~--~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
...+++.||||++.| .||++.+ |||+||+.||.+||..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999998 5677776 999999999999998777789999999887654
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-09 Score=92.73 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=49.5
Q ss_pred CCCCcccccCccccccCCe---ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 235 PIPSDFCCPLSLELMTDPV---IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV---~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
...+++.||||++.|.+|. +++|||+||+.||.+|+... .+||.||+++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 4567899999999999874 46999999999999999865 689999999998887776
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=110.50 Aligned_cols=227 Identities=12% Similarity=0.100 Sum_probs=159.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.+.+.+++.++.++..|+..|..++...... ......+|.|..++.++++.++..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 456788888888999999999999999998754321 223578999999999999999999999999886432111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc--h
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--E 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~--~ 699 (828)
......++.+..++.+.+..+|..++.+|..++..-.. ......+++.++.++++.++.++..|+.+|..++..- +
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 12235788888899888999999999999988752111 1123467899999999999999999999999987732 2
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
.+....-..+++.+..++ +++..++..++.+|..++..-.. ... ....++.+..++.+.++.+|..|+.+|..++.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 222223455677777777 56677777777777666542111 111 12345666666666666777766666665554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=113.70 Aligned_cols=264 Identities=12% Similarity=0.032 Sum_probs=195.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.+.+.+++.++.++..++..|..++..-.. .. .....+|.|..++.+++++++..++.+|..+...-.. ..
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~ 398 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ 398 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH
Confidence 45778888899999999999999999888753211 11 1235789999999998999999999998887532111 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.....++.|..++++.+..++..++.+|..++..-... ......++.+..+|.+.+..++..|+.+|..++..-+..
T Consensus 399 -~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 399 -LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp -HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 22356788889999889999999999998886411100 111245788899999999999999999999997743322
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.....+++.|..++ +++..++..++.++..++..-. .. ......++.|+.++.+.++.+|..++.+|..++..-+
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QD-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HH-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HH-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 23456788888877 5667788889999988876321 12 2223578999999999999999999999999997543
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
. ......+++.|..++.+.+..+|..|..+|..+..
T Consensus 552 ~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 552 N---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 12234567778888888899999999999987753
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-08 Score=116.96 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=152.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHH-HHhhcCCCHHHHHHHHHHHHHchhc--chhHH
Q 003339 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL-VDLLGNGTPRGKKDAATALFNLSIY--HENKA 702 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L-v~LL~s~~~~~~~~Al~aL~nLs~~--~~n~~ 702 (828)
..|.++++.|+++++..|..|+.+|.+|+.++..+..+...+++..+ ..+|.+.+..++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45677888899999999999999999999988889999888888775 5678888999999999999999984 57889
Q ss_pred HHHHhCcHHHHHHhcCC---------------C-------hHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc
Q 003339 703 RIVQAGAVKHLVDLMDP---------------A-------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL~~---------------~-------~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+++.|+++.|..+|.. . ..+.+.++.+|++||. ..+....+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 99999999999988710 0 1244578899999997 55667788888899999998843
Q ss_pred ---CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 760 ---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV---PPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 760 ---~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v---~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
....++..|+.+|+.|+..+....+.+...+.. ..|..+..+.. ..+..+..+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 357899999999999999999888888877643 33333333433 34556667777653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-07 Score=109.32 Aligned_cols=263 Identities=16% Similarity=0.112 Sum_probs=180.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH-H
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-S 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k-~ 620 (828)
+..++.+.+.+.+.++.+|..|+.++..+...+++. +.+.++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 456788999999999999999999999998876553 333578999999999999999999999999997653211 0
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh----
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI---- 696 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~---- 696 (828)
.....+.+..|+..|...++-.+...+.+|..+...++.. ...+++.+..+|++.+..++..|++++.++..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0111234677777777778878888888887776433211 12567888888998899999999999999864
Q ss_pred cchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-Cch------------------h-HHHH------HhCC--
Q 003339 697 YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPD------------------G-RVAI------GQEN-- 748 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e------------------~-r~~i------~~~g-- 748 (828)
+++... .+-..+.+.|+.+++++..++..|+..|..++. +++ - +.++ .+..
T Consensus 273 ~~~~~~-~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYN-MLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHH-HHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 222222 233455566776666667777777777776653 111 0 1111 1222
Q ss_pred --cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 749 --GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 749 --~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.++.|.+++.+.+...+..++.+|..+|...+.... ..++.|+.++....+.++..+...++.+
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 345566666778999999999999999987653222 2456666666666665555554444433
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-08 Score=108.71 Aligned_cols=274 Identities=12% Similarity=0.060 Sum_probs=189.1
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~ 616 (828)
.+.++.|++.+.++ ++.++..|+..|..++... +..-.... ...++.++.+|.++ ++.++..|+.++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999988 8999999999999998743 11100001 14778888999887 7999999999999874321
Q ss_pred c-cH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 617 N-NK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 617 ~-~k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
. +. ......-.++.+...+.+++..++..++.+|..+...... +..+ ..++++.++..+++.++.++..|+.++.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 10 0001111355666777778899999999999988753211 1111 1156777778888889999999999999
Q ss_pred HchhcchhHH------------------HHHH---hCcHHHHHHhcC-C-------ChHHHHHHHHHHHHHhCCchhHHH
Q 003339 693 NLSIYHENKA------------------RIVQ---AGAVKHLVDLMD-P-------AAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 693 nLs~~~~n~~------------------~iv~---~G~V~~Ll~LL~-~-------~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+++....... .+++ ..+++.|+..+. . +..++..|+.+|..|+..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 8876431110 1111 346677777662 1 23567788888888876322 12
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+. ...++.+...+.+.+...|+.|+.+|..++.+.. +..... -..+++.|+.++.+.++++|..|.++|..+....
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2356777788888999999999999999997543 111111 1568999999999999999999999999887654
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-09 Score=100.38 Aligned_cols=55 Identities=16% Similarity=0.439 Sum_probs=50.0
Q ss_pred CCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 237 PSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
++++.||||++.|++| |+++|||+||+.||.+|+... .+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5789999999999999 899999999999999999875 589999999988777665
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-09 Score=86.59 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=42.8
Q ss_pred CcccccCccccccCC-eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999998 678999999999999999865 689999998764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8.2e-08 Score=115.10 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=148.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhccCc--chHHH
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIE--DNKIK 662 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv-~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~ 662 (828)
.|.+++..|++.++..+..|+.+|.||+.++..+..+...|+|.+++ .+|.+.+.+++..|+++|.||+... +....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45567788999999999999999999998888889999999998865 5688889999999999999999754 55677
Q ss_pred HHhhCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-C-
Q 003339 663 IGRSGAIGPLVDLLGNGT---------------------PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D- 718 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~---------------------~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~- 718 (828)
+...|++++|..+|+... ..+...++.+|.+||.. .+....+...|+++.|+.+| +
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 888999999999986311 12345678899999884 45556788899999999987 2
Q ss_pred --CChHHHHHHHHHHHHHhC-CchhHHHHHhCCc---HHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 719 --PAAGMVDKAVAVLANLAT-IPDGRVAIGQENG---IPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 719 --~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~---I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
....+...|+.+|..|+. +++....+.+.+. ...+..+.. .+...+..++++|+|+..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 346788999999999999 5566677777654 233333333 444456788999999853
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-09 Score=89.23 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=46.4
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+.+++.||||++.+.+ |+++|||+||+.||.+|+.. ..+||.||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 46678999999999999 99999999999999999984 578999999987654
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-09 Score=85.21 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.+++.||||++.|.+||+++|||+||+.||.+| ...||.||+++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 367899999999999999999999999999883 46799999987653
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-09 Score=82.03 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=42.3
Q ss_pred CcccccCccccccC----CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 238 SDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 7889999999999999999987 78999998875
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-08 Score=85.28 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=45.6
Q ss_pred CCCCcccccCccccccCCeec---CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
+..++..||||++.|.+|+.+ +|||+|++.||.+|+... .+||.||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 467789999999999988765 999999999999999875 5899999987653
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=82.69 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=44.0
Q ss_pred CCCCcccccCcccccc---CCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 235 PIPSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
...++..||||++.|. +|++++|||+|++.||.+|+..+ .+||.||.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 3457789999999884 56779999999999999999875 5799999988653
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-08 Score=91.54 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCcccccCccccccCCe------------------ecCCCcchhHHHHHHHHhc----CCCCCCCCCCcCCC
Q 003339 236 IPSDFCCPLSLELMTDPV------------------IVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV------------------~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~ 286 (828)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456679999999999987 6899999999999999963 34679999988765
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=79.99 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=42.8
Q ss_pred CCCcccccCccccccC---CeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 236 IPSDFCCPLSLELMTD---PVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---PV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+.++..||||++.|.+ |++++ |||.|++.||.+|+... .+||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999998 88887 99999999999999864 68999998764
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-08 Score=88.25 Aligned_cols=50 Identities=14% Similarity=0.487 Sum_probs=44.3
Q ss_pred CCCcccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 236 IPSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4577899999999988 8889999999999999999864 689999998764
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-08 Score=85.07 Aligned_cols=50 Identities=12% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCcccccCccccccCC---eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 237 PSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.++..||||++.|.+| ++++|||.|++.||.+|+... .+||.||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCCC
Confidence 4678899999999998 778999999999999999875 6899999987653
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-08 Score=109.43 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=45.2
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
...||||.+.+.+||+++|||+||+.||..|+..+..+||.||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37899999999999999999999999999999865678999999987643
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-08 Score=85.36 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=40.4
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
+++.||||++.+.|||+++|||+ ||+.|+.+| .+||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999999 679999998764
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-08 Score=93.29 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=51.0
Q ss_pred CCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003339 236 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
-++.+.||||++.+.+| |+++|||+|+..||.+|+... .+||.||.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999875 6899999999988887763
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.1e-08 Score=81.13 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=39.5
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
+++.||||++.+.+||+++|||+ ||+.|+.++ ..||.||+++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 45679999999999999999999 999999643 6799999988763
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-06 Score=97.82 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=182.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
++.+..+-+.|++++.+.+..++..+..+.....+. ..+.+.++.++.+++..++..+..++.+++.... ..
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--e~ 83 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--DM 83 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH--HH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc--hH
Confidence 456788889999999888888777665443322111 2456778889999999999888888877754211 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
+ .-++..|.+-|.++++.++..|+.+|.++.. ++... ..++.+..+|.+.++.+++.|+.+|.++......
T Consensus 84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~- 154 (591)
T 2vgl_B 84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ- 154 (591)
T ss_dssp H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-
T ss_pred H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-
Confidence 1 2346778888899999999999999998852 22222 3367899999999999999999999999873221
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+.+.+.++.|..+| +++..++..|+.+|..++....... .-...+.+..|+..+...++..+-..+.+|..++..+
T Consensus 155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 223468899999999 6778899999999999998543210 0011234667777777788888888888888777655
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+.... .+++.|..++++.++.++..|..++..+..
T Consensus 234 ~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 234 DREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred hHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 43322 346777778888888888888888777653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.6e-06 Score=100.24 Aligned_cols=273 Identities=12% Similarity=0.060 Sum_probs=187.3
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 615 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~ 615 (828)
...++.|++.+.++ ++.++..++..|..++..-. ...+.. ...++.|...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999988 89999999999999887421 111222 25677788888776 688999999999987632
Q ss_pred -Ccc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 616 -DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 616 -~~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..+ .........++.+...+...+.+++..++.+|..+..... .-.......+++.++..+.+.++.++..|+.++.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 0001111256677777878889999999999998875322 1111122367888888888888999999999998
Q ss_pred Hchhcchh---------------------HHHHHHhCcHHHHHHhcC--------CChHHHHHHHHHHHHHhCCchhHHH
Q 003339 693 NLSIYHEN---------------------KARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 693 nLs~~~~n---------------------~~~iv~~G~V~~Ll~LL~--------~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+++..... ..+-.-..+++.++..+. .+..++..|+.+|..++..-. ..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hh
Confidence 88764210 000011345677777762 134567777788877765321 11
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+. ...++.+...+.+.++.+|+.|+.+|..++.+.. +.....+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 12 1346667777788899999999999999997653 3222222 34789999999999999999999999988765
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.9e-08 Score=86.03 Aligned_cols=67 Identities=13% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCcccccCccccccCCeec---CCCcchhHHHHHHHHhc----C---CCCCCC--CCCc--CCCCCCCCcHHHHHHHHHH
Q 003339 237 PSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDL----G---LFVCPK--TRQT--LAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pN~~l~~~i~~~ 302 (828)
.+.|.||||++.+.+|+++ +|||+||+.||.+||.. | ...||. |+.. +....+ .+....++++.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 3578999999999999875 79999999999999973 3 236999 9987 554332 233335667777
Q ss_pred HH
Q 003339 303 CE 304 (828)
Q Consensus 303 ~~ 304 (828)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=97.96 Aligned_cols=273 Identities=13% Similarity=0.109 Sum_probs=184.8
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~-~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
...++.+++.+..+ +..++..|+..|..++..-..+-. .......++.+...+.+.+.+++..++.+|..+... ..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 45678888888876 688999999999988753221100 011113577777888888899999999999988643 22
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-------------------hHHHHH--hhCChHHHHHhh
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-------------------NKIKIG--RSGAIGPLVDLL 676 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-------------------~k~~I~--~~g~I~~Lv~LL 676 (828)
.-...+....++.++..+.+.+..++..|+..+.+++.... ....+. -...++.++.+|
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 11122233677888888888888999999988887764310 000000 124567777777
Q ss_pred cC-------CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch--hHHHHHh
Q 003339 677 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD--GRVAIGQ 746 (828)
Q Consensus 677 ~s-------~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e--~r~~i~~ 746 (828)
.. .+...++.|+.+|..|+..-.. .+ -..+++.+...+ +++..+++.|+.+|..++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888999999988763321 11 224556666666 6678889999999999998432 222222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhH--HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 747 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC--SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~--~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...++.|+..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+...
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999998644210 000 124577788888775 88999999988877653
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.9e-06 Score=96.70 Aligned_cols=250 Identities=13% Similarity=0.081 Sum_probs=167.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~ 621 (828)
-.+..|.+.|++.++.++..|++.|..+.. ++ +. ...++.+..+|.+.++.++..|+.+|.++.. +++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 467889999999999999999999999874 22 22 2568889999999999999999999999964 23211
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC---------------CCHHHHHH
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN---------------GTPRGKKD 686 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s---------------~~~~~~~~ 686 (828)
.+.++.+..+|.+.++.++..|+.+|..++..+... .-.-...++.|+.+|.+ .++-.+..
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 267788888999999999999999999998653211 11113678888887753 36778888
Q ss_pred HHHHHHHchhcchhHHHHHHhCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003339 687 AATALFNLSIYHENKARIVQAGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+.+|..++...... ....++.|..++. .+..++-.|+.++..+...+..+. .++..|..++.+
T Consensus 254 il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~ 324 (618)
T 1w63_A 254 ILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN 324 (618)
T ss_dssp HHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC
Confidence 888998887754321 1233344444431 123456666666666644322111 245666677777
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++.+|..|+.+|..++...+. .+ + .....++..+.+.+..+|++|..+|..+..
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~p~---~~-~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTDHN---AV-Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHHHH---HH-G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHHHHHhhCHH---HH-H-HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 7777777777777777764432 11 1 234456666666666666666666655543
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=103.73 Aligned_cols=270 Identities=12% Similarity=0.125 Sum_probs=179.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc--
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-- 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-- 618 (828)
...++.+.+.+.+.++..+..|+..|..++.... +.-.... ...++.|+..+.++++.++..++++|..++..-..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 4567788888888899999999999999987532 2111111 25788999999999999999999999988642100
Q ss_pred --HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--hHHHHHh--hCChHHHHHhhcCC--CHHHHHHHHHH
Q 003339 619 --KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNG--TPRGKKDAATA 690 (828)
Q Consensus 619 --k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~--~g~I~~Lv~LL~s~--~~~~~~~Al~a 690 (828)
... -...++.|+..|.+. ..++..|+.+|.+++..-. ....+.. ...++.|+.++.+. +..++..++.+
T Consensus 447 ~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 447 DPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp CTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 001 124577788888775 8899999999988864211 0011111 24578888888854 37889999999
Q ss_pred HHHchhcchh-HHHHHHhCcHHHHHHhcCC----------------ChHHHHHHHHHHHHHhCCchhHHHHH--hCCcHH
Q 003339 691 LFNLSIYHEN-KARIVQAGAVKHLVDLMDP----------------AAGMVDKAVAVLANLATIPDGRVAIG--QENGIP 751 (828)
Q Consensus 691 L~nLs~~~~n-~~~iv~~G~V~~Ll~LL~~----------------~~~v~~~Al~~LanLa~~~e~r~~i~--~~g~I~ 751 (828)
|..+...... ....+ ..+++.+++.+.. ...++..++.+|.+++..-.. .+. -...++
T Consensus 524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~ 600 (861)
T 2bpt_A 524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMG 600 (861)
T ss_dssp HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHH
T ss_pred HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHH
Confidence 9999774322 12222 2456666665521 123556788888888762221 111 123577
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 752 VLVEVVELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 752 ~Lv~lL~s~s~-~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++.++...+. .+++.++.++..++...+......+ ..+++.|...+...++.++..|..++..+..
T Consensus 601 ~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77888877766 8899999999888865432222111 2368888888877788889888888776644
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=92.71 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=149.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..++.+.+.|.+.++.++..|+.++..+...+++.. .++++.|..+|.+.|+.++..|+.+|..++........
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 4568889999999999999999999999998776532 26888889999999999999999999998754221100
Q ss_pred HHHcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHhccCcch-HH------------------------
Q 003339 622 IANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSVIEDN-KI------------------------ 661 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s---------------~~~e~~~~Aa~aL~nLS~~~e~-k~------------------------ 661 (828)
.-...++.++.+|.+ .++-.+...+.+|..+...+.. ..
T Consensus 216 -~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 -HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp -HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 112456666665542 2455555555555555432210 00
Q ss_pred -----HHH--------hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHH
Q 003339 662 -----KIG--------RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKA 727 (828)
Q Consensus 662 -----~I~--------~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~A 727 (828)
.+. ...++..|..+|.+.++.++..|+.+|..++.... .++ ......++..+ +++..++..|
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHHH
Confidence 000 01245667777777777777777777777765322 122 22445566666 6678888889
Q ss_pred HHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 728 VAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 728 l~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+.+|..++...... . .+..|.+.+.+.+...+..++.+|..+|..
T Consensus 371 lelL~~l~~~~nv~-~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 371 MELSFALVNGNNIR-G-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHCCSSSTH-H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99988888743321 1 356777778788899999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-05 Score=77.78 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=158.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~ 620 (828)
+..+..|+.+|...++.++.+|+..|-.+-+.-+..-....-...++.++.++.+.|..+...|+.+|..|-.+ +-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788999999999999999999999999887433333333346899999999999999999999999888655 33333
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
.+.. .+..|..++++++.-.+++|+..|..|......+ +.+..+..++.+.+.+++..|+.+|.|++...+.
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 3332 4677888899999999999999999995443333 4467888899888999999999999999885543
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHH-HH-ccCCHHHHHHHHHH
Q 003339 701 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE-VV-ELGSARGKENAAAA 771 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~-lL-~s~s~~~ke~Av~~ 771 (828)
.. +-.+++.-+-.+| +.++.+++.|+.+|..+.+.+--...+-+.-.+-..++ +. ..|.|..+..|-.+
T Consensus 184 ~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 184 SG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 32 2234455566677 56889999999999999986433111111112222232 22 35777777666443
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-07 Score=74.65 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCcccccCccccccCCeec--CCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 236 IPSDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
-+++..|+||++-++|+|++ ||||. ||..|+.+|+..+ ..||.||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence 34677899999999999988 99999 8999999999864 679999998753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-06 Score=95.66 Aligned_cols=268 Identities=10% Similarity=0.081 Sum_probs=182.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC--ccH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND--NNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~--~~k 619 (828)
....|+..|.+.++.+ ..++..|..++....... .-.+.++.|+..+.++ ++.+++.|+.+|..++..- ..-
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 3456888888877777 888888888887531110 1147899999999988 9999999999999987431 110
Q ss_pred HHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc-h-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003339 620 SAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED-N-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e-~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
... -...++.++..|.+. +..++..|+.++.++...-. + .......-.++.|..++.+.+..++..++.+|..++
T Consensus 167 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 001 124677888899887 78999999999998754211 1 000011124666777788889999999999999998
Q ss_pred hcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH------------------HHh---CCcHHH
Q 003339 696 IYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA------------------IGQ---ENGIPV 752 (828)
Q Consensus 696 ~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~------------------i~~---~g~I~~ 752 (828)
...... ...+..++++.++..+ +.+..++..|+..|..++........ +.+ ...+|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 743221 1111126777777766 67788889999999888864311111 111 224666
Q ss_pred HHHHHcc-------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 753 LVEVVEL-------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 753 Lv~lL~s-------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+++.+.. .+...+..|+.+|..++...++ .++ ..+++.+...+.+.+.+.|+.|..+|..+...
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 6666643 2457899999999999876542 121 24677788888888999999999999988753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=96.40 Aligned_cols=274 Identities=13% Similarity=0.085 Sum_probs=185.8
Q ss_pred hhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCh-hhHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhc
Q 003339 541 IETQVRKLVEDLKST-SLDTQREATAELRLLAKHNM-DNRMVIA--NCGAINILVDMLHSS--ETKIQENAVTALLNLSI 614 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~-~nr~~i~--~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~ 614 (828)
+.+.++.|++.+.++ ++..+..++..+..+++.-. +.+ .+. -...++.++..+.++ ++.++..|+.+|.++..
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999988 89999999999998887422 111 000 113567777788776 89999999999988642
Q ss_pred C-CccH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 003339 615 N-DNNK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 615 ~-~~~k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
. ..+- ........++.|...+.+++..++..++.+|..+..... ....+ ....++.+...+.+.+..++..|+.+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 1110 000112256667778888899999999999988875321 12222 11566777778888899999999999
Q ss_pred HHHchhcchhH-----------------HHHHHhCcHHHHHHhcCC--------ChHHHHHHHHHHHHHhCCchhHHHHH
Q 003339 691 LFNLSIYHENK-----------------ARIVQAGAVKHLVDLMDP--------AAGMVDKAVAVLANLATIPDGRVAIG 745 (828)
Q Consensus 691 L~nLs~~~~n~-----------------~~iv~~G~V~~Ll~LL~~--------~~~v~~~Al~~LanLa~~~e~r~~i~ 745 (828)
+..++...... ..-.-..+++.|+..+.. +..++..+..+|..++..-. ..+.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 99987753211 011115577788877721 23567778888888876321 1111
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...++.+.+.+.+.+...|+.|+.+|..++.+.. ......+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1245666677778899999999999999997642 3222222 24788999999999999999999988877654
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=5e-07 Score=77.76 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=40.7
Q ss_pred CcccccCccccccC--------------Ceec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTD--------------PVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~d--------------PV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4455 599999999999999875 689999998754
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-07 Score=72.87 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CcccccCccccccCCeec--CCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.+..|+||++-++|||++ ||||. ||+.|+.+|+..+ .+||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 456799999999999998 99998 9999999999865 679999998753
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=106.67 Aligned_cols=272 Identities=11% Similarity=0.091 Sum_probs=185.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...+..|++.+.+.+++++..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 35688999999999999999999999876553211000001124677888999889999999999999999754222 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH------HHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHc
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK------IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNL 694 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k------~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nL 694 (828)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+..++..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677888888888888998998888876421111 11112367899999998 47889999999999998
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHH
Q 003339 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L 772 (828)
+........-.-...++.|+..| +++..++..|+.+|..++...... +. ...++.|+..+... +...+..++.++
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 75211100001144666677777 567788999999999999754322 22 24588888888653 345677788888
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..++...+...... -..+++.++..+.+.++.+|+.|..++..+...
T Consensus 239 ~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 239 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 88877544211100 146789999999888888999998888776553
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.4e-07 Score=76.73 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=40.0
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
++..|+||++.+.|||++||||. ||+.|+.+|+ .||.||+++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 45679999999999999999999 9999999873 799999988763
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-06 Score=76.53 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcccccCccccccCC------------------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 238 SDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
++-.|+||++-|.+| ++++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999987 33799999999999999987 478999999864
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.02 E-value=7.7e-07 Score=97.22 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 237 PSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.+++.||||++.+.+||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 569999998764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=101.08 Aligned_cols=228 Identities=13% Similarity=0.110 Sum_probs=161.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH--
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-- 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k-- 619 (828)
...++.|++.|.+.++.+|..|+..|..++..-.. ..+ ...++.|+..|.++++.++..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 56788999999999999999999999999875433 111 236778888888888899999999998886431111
Q ss_pred ----HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 620 ----SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 620 ----~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..-.....++.|+..+. +++...+..|+.+|..++.. ..... .....++.|+..|.+.+..++..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11123467888999998 57899999999999988631 11110 01245778888888888999999999999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHccCCHHHHHHH
Q 003339 693 NLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
.++...... + -...++.|+..| ..+..++..++.+|..++..... .+.. ...++.++..+...++.+|+.|
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a 275 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYC 275 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 998754332 1 345678888877 22233455667777766652111 2221 3568999999988889999999
Q ss_pred HHHHHHHhhCCH
Q 003339 769 AAALLQLCTNSS 780 (828)
Q Consensus 769 v~~L~~L~~~~~ 780 (828)
+.++..++...+
T Consensus 276 ~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 276 IQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHCh
Confidence 999999887644
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.7e-05 Score=78.60 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=134.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDN-RMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIAN 624 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n-r~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~~I~~ 624 (828)
.+.+.+.+.++..+..|+..|..+....+.. ...+ ...++.|...|. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4777888999999999999999988752221 0001 145778888895 88999999999999999743111001112
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc--chh-H
Q 003339 625 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HEN-K 701 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~--~~n-~ 701 (828)
...++.|+..+.+.+..++..|..+|..+...... ...++.|...|++.++.++..++.+|..+... ++. -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34789999999999999999999999998764332 23578888999999999999999999996543 221 1
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
...+ ..+++.|+.+| +....++..|..+|..++.
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 36888899988 6778899999999988876
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.9e-05 Score=77.31 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=133.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccC-cchH-HHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHH
Q 003339 630 PLIHVLQTGSPEARENAAATLFSLSVI-EDNK-IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 630 ~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k-~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
.+...+.+.++..|..|+..|..+... +... ..+ ..+++.|..+|. +.+..++..|+.+|..|+..-.....-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 477788888999999999999888653 2210 000 145777888884 88999999999999999863222111233
Q ss_pred hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC-CHH-hH
Q 003339 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-SSR-FC 783 (828)
Q Consensus 707 ~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~-~~~-~~ 783 (828)
..+++.|++.+ +.+..+++.|..+|..++..... ...++.|...+.+.++.+|+.++..|..+... ++. ..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55788888888 67788999999999998875321 12577888888889999999999999996544 332 11
Q ss_pred HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 784 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 784 ~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...+ ..+++.|..++.+..+++|..|..+|..+..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222 2579999999999999999999998887654
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=81.06 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=157.8
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHhhcC---------------C--CHHHHHHHHH
Q 003339 589 ILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT---------------G--SPEARENAAA 648 (828)
Q Consensus 589 ~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g--~l~~Lv~lL~s---------------~--~~e~~~~Aa~ 648 (828)
.++..|.. .+...+..++.+|..|...+..|..+.+.+ .+++++.+++. + ....+.+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34555554 345667788888988888888888887653 46667654431 1 2567899999
Q ss_pred HHHHhccCcchHHHHHhhCCh--HHHHHhhcCC-CHHHHHHHHHHHHHchhcc-----hhHH-HHHHhCcHHHHHHhc-C
Q 003339 649 TLFSLSVIEDNKIKIGRSGAI--GPLVDLLGNG-TPRGKKDAATALFNLSIYH-----ENKA-RIVQAGAVKHLVDLM-D 718 (828)
Q Consensus 649 aL~nLS~~~e~k~~I~~~g~I--~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~-----~n~~-~iv~~G~V~~Ll~LL-~ 718 (828)
++|-|+..++....+...+.. ..|+++++.. ...+.+.++.+|.||.... .... .++..++ ..+++.| .
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998877777665543 6777778765 6899999999999998754 1122 2333445 4455655 2
Q ss_pred ---CChHHHHHHHHHHHH-------HhC---------------CchhHH-HH--------HhCC--cHHHHHHHHcc---
Q 003339 719 ---PAAGMVDKAVAVLAN-------LAT---------------IPDGRV-AI--------GQEN--GIPVLVEVVEL--- 759 (828)
Q Consensus 719 ---~~~~v~~~Al~~Lan-------La~---------------~~e~r~-~i--------~~~g--~I~~Lv~lL~s--- 759 (828)
.++++.+..-.+... +++ +|-.+. .+ -+.+ .+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 455555432222221 221 222221 22 2222 47899999973
Q ss_pred -------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 760 -------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 760 -------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.++.+..-||.=|..++++.|..+..+-+.|+-..++.|+.+.++.+|..|..++..+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35778888899999999999988888888999999999999999999999998887553
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=7e-06 Score=68.10 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003339 236 IPSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
-.++..|+||++-..|||++||||. ||..|+.+ ...||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 3457899999999999999999999 99999984 36799999988763
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00072 Score=79.93 Aligned_cols=253 Identities=11% Similarity=0.118 Sum_probs=167.7
Q ss_pred hhHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L--~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+..++.+.+.| .+.++.++..|+.++..+.+.+++. +...+.++.|..+|.+.|+.++..|+.+|..++....
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence 45677888888 8889999999999999998876543 2224899999999999999999999999998865322
Q ss_pred HHHHHcCCHHHHHHhhc----CC-------------CHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhh----
Q 003339 620 SAIANANAIEPLIHVLQ----TG-------------SPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLL---- 676 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~----s~-------------~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL---- 676 (828)
..+ ...++.++..|. .+ ++-.+...+.+|..+...+ +.+..+. ..+..++..+
T Consensus 220 ~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 220 EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP 295 (621)
T ss_dssp HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence 111 133444444332 22 4667778888887776532 2233222 2333333322
Q ss_pred -----cCCCH--HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003339 677 -----GNGTP--RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 677 -----~s~~~--~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
++.+. .+...|+.++..+...++. ...++..|..+| +++..++-.|+..|..++........+. .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~-----~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNL-----LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 11222 6777888888888643332 224667788888 5778888899999999987543223332 3
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 749 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 749 ~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
....++..+. +.+..++..|..+|..++.. .....+ +..|...+...+...++.+...+..+
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677788888 88899999999999999854 233333 44555566556666666655555444
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0012 Score=77.97 Aligned_cols=254 Identities=12% Similarity=0.129 Sum_probs=174.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL--~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
-.+..+.+.|+++++.++..|++.|..+.. ++ +++ ..++.+..+| .+.++.++..|+.++.++..... .
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence 357788899999999999999999999854 22 222 4678888899 88899999999999999864211 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc----CC-------------CHHH
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG-------------TPRG 683 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----s~-------------~~~~ 683 (828)
.+-..+.++.|..+|.+.++.++.+|+.+|..++..... . -...++.+++.|. .+ ++=+
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 111247899999999998999999999999998753321 1 1133444444332 21 4668
Q ss_pred HHHHHHHHHHchhc--chhHHHHHHhCcHHHHHHhc-C-C----------ChHHHHHHHHHHHHHhCCchhHHHHHhCCc
Q 003339 684 KKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-P----------AAGMVDKAVAVLANLATIPDGRVAIGQENG 749 (828)
Q Consensus 684 ~~~Al~aL~nLs~~--~~n~~~iv~~G~V~~Ll~LL-~-~----------~~~v~~~Al~~LanLa~~~e~r~~i~~~g~ 749 (828)
+...+.+|..++.. ++.+..+.+ .++.++..+ + + ...++-+|+.++..+...++.+. .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 88888888888763 233333332 333333322 1 1 22667778888877764433222 34
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 003339 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~lL~~L~~ 819 (828)
+..|..++.+.++.+|..|+..|..++...+. ...+ + .....++..+. +.+..+|.+|..+|..+..
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 66788888888999999999999999987642 1222 2 34667777777 7788899999998876654
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.7e-05 Score=66.70 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCCcccccCccccc--cCCeecCCC-----cchhHHHHHHHHhcCC-CCCCCCCCcCCCC
Q 003339 236 IPSDFCCPLSLELM--TDPVIVASG-----QTYERAFIKKWIDLGL-FVCPKTRQTLAHT 287 (828)
Q Consensus 236 ~p~~f~CpI~~~lm--~dPV~~~~G-----~ty~r~~I~~~~~~~~-~~cP~t~~~l~~~ 287 (828)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ .+||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999766 579999996 9999999999998743 6899999998653
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.71 E-value=4.4e-06 Score=78.08 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=92.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|+..|++.++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 457889999999888888888887765532 137999999999999999999999988742
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
..+++.|+..|++++..++..|+.+|..+. ...+++.|+.+|++.+..++..|+.+|.+|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 245899999999999999999999999874 235689999999988999999999998654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.3e-06 Score=77.52 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003339 583 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
....++.|+.+|.++++.++..|+.+|.++.. ..++.|+.+|++.+..++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 34678899999999999999999988876531 137899999999999999999999988752
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 733 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~Lan 733 (828)
..+++.|+.+|++.++.++..|+++|.++. ...+++.|+.++ +++..++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999875 235688899988 5677788888887754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00035 Score=72.89 Aligned_cols=186 Identities=11% Similarity=0.143 Sum_probs=131.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccChhhHHHHHh-cCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCC---ccH-H
Q 003339 548 LVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIAN-CGAINILVDML-HSSETKIQENAVTALLNLSIND---NNK-S 620 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~-La~~s~~nr~~i~~-~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~---~~k-~ 620 (828)
+-+.+.+.++..+..|+..|.. +....+.......+ ...+..|...+ .+.+..++..|+.+|..|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567789999999999999999 87543221100011 14577888888 6789999999999999997421 111 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH--hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~--~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
. ..-.++.|+..+++....++..+..+|-.+...-+. .... -...++.|+..|++.++.++..++.+|..+....
T Consensus 101 y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 123688999999988888988888888877642110 0000 1145788888999999999999999999987743
Q ss_pred hh---HH-HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 699 EN---KA-RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 699 ~n---~~-~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
.. .. ..+...+++.|.+++ +++..++..|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 32 11 222368999999999 6788899999888888764
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=9.5e-06 Score=74.56 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=0.0
Q ss_pred ccccCccccccCCe-----------------e-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 240 FCCPLSLELMTDPV-----------------I-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~lm~dPV-----------------~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
-.|+||++-|.+|. + ++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999998853 2 489999999999999987 478999998754
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0015 Score=73.50 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=152.5
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcC--cHHHHHHHHcC---------------C--CHHHHHHHH
Q 003339 547 KLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCG--AINILVDMLHS---------------S--ETKIQENAV 606 (828)
Q Consensus 547 ~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~G--aI~~Lv~lL~s---------------~--d~~v~e~A~ 606 (828)
.++..|+.. +.+.+.-++.+|..|.. .++.|..+.+.+ .++.++.++.. . ..+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 455556552 45567778899998888 457888887653 46777654431 1 356789999
Q ss_pred HHHHHhhcCCccHHHHHHcCCH--HHHHHhhcCC-CHHHHHHHHHHHHHhccCc--chHH----HHHhhCChHHHHHhhc
Q 003339 607 TALLNLSINDNNKSAIANANAI--EPLIHVLQTG-SPEARENAAATLFSLSVIE--DNKI----KIGRSGAIGPLVDLLG 677 (828)
Q Consensus 607 ~aL~nLs~~~~~k~~I~~~g~l--~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~--e~k~----~I~~~g~I~~Lv~LL~ 677 (828)
-++.-|+.++.....+...+.. +.|+.+++.. ...+..-++++|.||.... +.+. .+...++ ..++..|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999987766666655533 5677777754 5788899999999998754 2222 2333444 44556555
Q ss_pred CC---CHHHHHHHHH-------HHHHchhcchhH------------------------HHHHH--hCcHHHHHHhcCC--
Q 003339 678 NG---TPRGKKDAAT-------ALFNLSIYHENK------------------------ARIVQ--AGAVKHLVDLMDP-- 719 (828)
Q Consensus 678 s~---~~~~~~~Al~-------aL~nLs~~~~n~------------------------~~iv~--~G~V~~Ll~LL~~-- 719 (828)
.. ++++..+--. .+..|++.++.+ .++-+ ..++..|+++|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 4444332111 222333222222 22222 2377888888842
Q ss_pred ---------ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 720 ---------AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 720 ---------~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
++.+..-||.=++.++. +|+||..+-+.|+=..++++|.+.+++++.+|..++..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24455666777888888 999999888899999999999999999999999999877643
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0031 Score=67.71 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=134.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..+++.|.+++...++.++..|..+-..+...-..++..+|+..|+......+..++..++++|.+|-.+..+...+
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 45788889999888899999999999844446667777788899999999999999999999999999998887777666
Q ss_pred HH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhh----------CChHHHHHhhc---CCCHHHHHHH
Q 003339 623 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRS----------GAIGPLVDLLG---NGTPRGKKDA 687 (828)
Q Consensus 623 ~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~----------g~I~~Lv~LL~---s~~~~~~~~A 687 (828)
+. ...|..|..++.+....+...|+.+|..+....+ +...+.+. -.++.|+.+|+ .++.+++.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 64 4688899999998888999999999999987554 33332221 24889999997 6689999999
Q ss_pred HHHHHHchhc---chhHHHHH----HhCcHHHHHHhc
Q 003339 688 ATALFNLSIY---HENKARIV----QAGAVKHLVDLM 717 (828)
Q Consensus 688 l~aL~nLs~~---~~n~~~iv----~~G~V~~Ll~LL 717 (828)
...|-.+... .+.+..++ +.|.-..+...+
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 9887766552 22233333 345445555555
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0014 Score=66.54 Aligned_cols=216 Identities=14% Similarity=0.091 Sum_probs=157.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~ 662 (828)
+.+..|..+|+..|+.++.+|+.+|..+-.. +.......-...++.++.++++.+..+...|+.+|..|-... -....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4677899999999999999999999998654 222222333467999999999999999999999999886532 22222
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
+. ..+..|.+++.++++-....|+..|..|...... .+++..+..++ +.+..+...++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 22 3467899999999999999999999998332222 34566777788 567888999999999999854433
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHH-------Hhh-cCCCHHHHHHHHHH
Q 003339 742 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV-------ALS-QSGTPRAKEKAQAL 813 (828)
Q Consensus 742 ~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~-------~LL-~~g~~r~r~kA~~l 813 (828)
..+ .+.+..+-+++.+.++..++.|..+|..+....- .++.++.+. .+. ..|.|..+.+|..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPL-------LENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC-------CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc-------cHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 222 1345667778999999999999999999887631 123333332 333 46788888888776
Q ss_pred HHHh
Q 003339 814 LSYF 817 (828)
Q Consensus 814 L~~L 817 (828)
-..+
T Consensus 256 ~~~l 259 (265)
T 3b2a_A 256 SDLI 259 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00029 Score=73.51 Aligned_cols=189 Identities=10% Similarity=0.076 Sum_probs=132.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hcc-CcchHHHHHh-hCChHHHHHhh-cCCCHHHHHHHHHHHHHchhcch-hHHH-H
Q 003339 631 LIHVLQTGSPEARENAAATLFS-LSV-IEDNKIKIGR-SGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE-NKAR-I 704 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~n-LS~-~~e~k~~I~~-~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~~~~-n~~~-i 704 (828)
+...+.+.++.-|..|+..|.. +.. .........+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999998 763 2111100111 14477788888 68899999999999999985222 1111 1
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHH--hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003339 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
...-+++.+++.+ +....+++.+..+|..++.+-+- .... -...++.|...|.+.++.+|+.++.+|..++...+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2234788888888 56677888888888888763211 0010 012577888888989999999999999998876542
Q ss_pred ---hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 782 ---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 782 ---~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.....+...+++.|..++.+.++.+|..|..+|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 222233357899999999999999999999988877543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0081 Score=73.08 Aligned_cols=235 Identities=18% Similarity=0.123 Sum_probs=161.3
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 003339 544 QVRKLVEDLKSTS--------LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 615 (828)
Q Consensus 544 ~V~~Lv~~L~s~~--------~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~ 615 (828)
.+..|...|.+.+ +.++..|+-.|....-.+. ...+++.|..+|..++..+.+.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4666777776544 5567777777777644331 113577889999888877777888888766444
Q ss_pred CccHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003339 616 DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 693 (828)
Q Consensus 616 ~~~k~~I~~~g~l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL~n 693 (828)
..|.. ++..|+..+ .+.+..++..++..|.-+.. ++...++.+++.|.. .++-++..|+.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33332 345566554 34567788888888776543 234678888888874 577777777777654
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHH
Q 003339 694 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~ 770 (828)
-.....|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.+++++ ++.++.+|..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333332 3466677766 5667888889999998876432 3467777754 5689999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+|..+|.+++. ..++..|..++.+.++.+|..|...|..+-..
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 99999987752 23466778888888899999998888877554
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0065 Score=65.26 Aligned_cols=178 Identities=11% Similarity=0.061 Sum_probs=128.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH-HhC
Q 003339 631 LIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-QAG 708 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv-~~G 708 (828)
++..|.+++...+..++.-|.. ++.+.+....++..+++..|+.+...++...+.++++||.+|..+.+.-.-++ ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3344555666666666666666 55567778888889999999999999999999999999999999877765555 567
Q ss_pred cHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHh--------CC--cHHHHHHHHc---cCCHHHHHHHHHHHH
Q 003339 709 AVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQ--------EN--GIPVLVEVVE---LGSARGKENAAAALL 773 (828)
Q Consensus 709 ~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~--------~g--~I~~Lv~lL~---s~s~~~ke~Av~~L~ 773 (828)
.|..|..++ .....++..|+.+|..++...+ +...+.+ .| .+..|+.+|. +++...+.+|...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 888899888 5567788999999999998554 3333222 11 2789999997 688999999999887
Q ss_pred HHhhCCH--H----hHHHHHhCCCHHHHHHhhcCC--CHHHHH
Q 003339 774 QLCTNSS--R----FCSMVLQEGAVPPLVALSQSG--TPRAKE 808 (828)
Q Consensus 774 ~L~~~~~--~----~~~~v~~~g~v~~L~~LL~~g--~~r~r~ 808 (828)
.+..+.+ + ....+-+.|.-..+...+... ++..++
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 7655432 2 222333456556677766664 334443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.14 Score=50.24 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=149.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+.++..++..|..+-+.+|.+|+..|..+++.-++...- .+..|+.+++. +.-.+......+++.++.-. -
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---P 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---H
Confidence 578999999999999999999999999999977665333 35566667654 44555455667777776321 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.++ .+.+|.|..-+.-|++.++.+...+|..++. +++.-. +++..+..+|.+.+..-+..|+..|..|..++-
T Consensus 103 e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 111 2456777777788999999999999998865 333222 456778888998887777777777777755432
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+ .-...+|.|..|| +.+.-++..|+.+|.+|+. ++.-|..+ ...++-++..|..++......|..+..
T Consensus 177 ---~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 177 ---K-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ---H-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ---c-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2 2356788899999 4555566789999999999 55544433 334455667788888777777766654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0068 Score=66.35 Aligned_cols=244 Identities=13% Similarity=0.036 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.....++.+.+.+.+.++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+.+|.++...+-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 3445677888999888887777777887763321 1 25777788888899999999999999996443211
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHH
Q 003339 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
...+.+-+.|.+.++.++..|+-+...|.... ...+ .+++..+-+++.+.++.++.+|+.+|+.+...+..
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 24556777888999999999999988886432 2222 37899999999999999999999999999764321
Q ss_pred HHHhCcHHHHHHhc-CC---ChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 704 IVQAGAVKHLVDLM-DP---AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 704 iv~~G~V~~Ll~LL-~~---~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+..|+.-+ .. ++-..-..+.++..++...+. -.....++.|...|++.++.+...|+.++..+....
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 233344433 11 121222223333333322100 012345667777788899999999999999986533
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.. + ...++..|..++.+.++.+|-.|...|..+..
T Consensus 282 ~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 282 AK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 21 1 13456777778888888888888776655544
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.017 Score=71.06 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=181.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh---hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh--cCCc
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD---NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS--INDN 617 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~---nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs--~~~~ 617 (828)
+.+..|.+.+...... ..|+..+..|+..... .-..+. +.+|.++..+.+....|+..|-.++..+. .++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777654333 7888888888864421 112222 57888888887778889888887776663 2332
Q ss_pred cHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 618 NKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. ...+|.|+..|++. .+..+..|+.+|..|+... ...++.. ..||.+.+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 22 34688899888765 5999999999999998643 3444443 7899999999999999999999999999
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003339 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
|..-+|+. =...+|.|++.+ +++. +.+++..|..-....+--..... =.+|.|..-|...+...+..++.++-
T Consensus 203 ~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 88544432 156788899987 5643 66677666665553332221110 12677777777778889999999999
Q ss_pred HHhhC--CHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcc
Q 003339 774 QLCTN--SSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~--~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~ 820 (828)
|||.- ++.....+ -...+|.|......- +|++|+.|..++..|.+.
T Consensus 277 n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99984 44333332 356788888876654 699999999999888664
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0088 Score=65.43 Aligned_cols=237 Identities=10% Similarity=0.037 Sum_probs=129.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..|.+.++++++-++..|++.|..+.... - .+ ...+.+-+.|.+.++.|+..|+-+...|.... ...+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m----~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--M----LQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--T----HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--H----HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH
Confidence 35788899999999999999999999986643 1 11 34667788888999999999999998885432 2332
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC---CHHHHHHHHHHHHHchhcch
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al~aL~nLs~~~~ 699 (828)
+ ++++.+-.++.+.++-++.+|+++|..+...+. .++..|+.-+..+ ++-.+..-+..+..++..++
T Consensus 175 -~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 -K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp -H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred -H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2 689999999999999999999999999976542 1344445444443 34444444444444433220
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
. -.....++.|..+| +.+..++-+|+.++..+...+.. +. ..++..|..++.+.++.+|..|+..|..+...
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0 02244555666666 56677888888888777552221 11 23456677778888999999999999999887
Q ss_pred CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHH
Q 003339 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810 (828)
Q Consensus 779 ~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA 810 (828)
.+...+. .-.-+..++.+++..+.-.|
T Consensus 318 ~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 318 HPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp --------------------------------
T ss_pred CcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 7643322 23345555556554444333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.30 E-value=0.33 Score=59.18 Aligned_cols=239 Identities=15% Similarity=0.060 Sum_probs=152.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+..+..|...|...+......|+..|..+-.++ .|. .++..|+..+ ...+..++..++.+|..+....
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---- 539 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR---- 539 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC----
Confidence 456788888888777655666777777653332 122 2455666654 4457888888999998775443
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcc
Q 003339 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~ 698 (828)
...++.+++.|.. .++.+|..++.++.--.....+ ..+|+.|+..+. +.+..++..|+.+|..+....
T Consensus 540 ----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 540 ----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 2457778877764 5677777766665422111111 234666666654 447789999999998876543
Q ss_pred hhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 699 ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
+ ..++.++.+| +.+..++..|..+|+.++...... .++..|..++...+..++.+|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 2 3566777766 467788888999999998743321 24567777888899999999999999998
Q ss_pred hCCHHhH-HHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 003339 777 TNSSRFC-SMVLQEGAVPPLVALSQS--GTPRAKEKAQALLSYF 817 (828)
Q Consensus 777 ~~~~~~~-~~v~~~g~v~~L~~LL~~--g~~r~r~kA~~lL~~L 817 (828)
.+..+.. ..+ .+....|.....+ .++.++-.|.-.+.++
T Consensus 676 ~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 8654320 011 0123345555543 3455555555544444
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0038 Score=50.16 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred CcccccCccccccCCeecCCCc-----chhHHHHHHHHhc-CCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 286 (828)
+.-.|.||++-..+|.+.||.. -|=+.||.+|+.. ++.+||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456999998888999889643 6999999999985 56789999988753
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0036 Score=52.46 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCC
Q 003339 240 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 286 (828)
-.|+||.+++..=+. ..|||.|=..||.+||+.. ..+||.|+++...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 569999998874333 3699999999999999864 3689999988654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.24 E-value=1 Score=44.24 Aligned_cols=213 Identities=12% Similarity=0.168 Sum_probs=141.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
.++..++.+|+.+-..+|.+|+.++.+++.. ++-.. ..+..|+-+++ +.........+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 5678899999998899999999999998754 32222 22444555554 45566666677777776531 111
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003339 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
++ .+.+|.+..=.+-++++.+.+-..+|..++..... .-.+++.-+..++ +++..-.-.|+..+..+.. .+-
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe--n~~ 176 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE--NSF 176 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT--TTH
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc--cCc
Confidence 11 24456666666778999999999999998774332 3345667777788 4443333344444443333 222
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 742 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 742 ~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+ ...+|.|..+|..++.-++..|+.+|.+++.-++..+..+. ..+.=+.+.++-++++..+.|..+.--
T Consensus 177 ~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 177 KYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 222 25799999999999999999999999999999987555442 233334555667777777766665443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.12 Score=54.19 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=120.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhH--HHHH-hc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--C-c-cH
Q 003339 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNR--MVIA-NC-GAINILVDMLHSSETKIQENAVTALLNLSIN--D-N-NK 619 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr--~~i~-~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~-~-~k 619 (828)
|-+.|.+.++..|..|+..|..+....+... .... .. ..++.+-..+.+.+..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5588999999999999999988765432211 1111 12 3455666778888999999999999887542 1 1 12
Q ss_pred H--HHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003339 620 S--AIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~--~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
. ...-...++.|+.- |.++...++..+..+|..+........ .+++.++..+++.++.++..++.+|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2 22234567777764 778888899888888877654322211 124667777888899999999999988755
Q ss_pred cchhH---HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 697 YHENK---ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 697 ~~~n~---~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
....+ ....-..+++.+..+| +.+..+++.|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 32111 1111123444556666 6788999999998887766
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=54.45 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.3
Q ss_pred cccCccccccCCe-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 241 CCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 241 ~CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.||+|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888877555443 589999999999999998888899999988765
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0088 Score=67.75 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=154.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHH--cC--------CCHHHHHHHHHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDML--HS--------SETKIQENAVTALLN 611 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL--~s--------~d~~v~e~A~~aL~n 611 (828)
+...|+..|-++.+++|--|+-.||.+.+.....-...... ...-.|+-.| +. .-..|+|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56888899999999999999999998876542110000111 2222232222 11 135699999999998
Q ss_pred hhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHH
Q 003339 612 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 612 Ls~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
+ .+-... ..++..|+..+..+..+++..++-.|.++. ..+. -.++++.++.-|++.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 652222 345666666667788999999999999981 1111 23678888888999999999999999
Q ss_pred HHHchhcchhHHHHHHhCcHHHHHHh----c---CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHH
Q 003339 691 LFNLSIYHENKARIVQAGAVKHLVDL----M---DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~~G~V~~Ll~L----L---~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 763 (828)
|.-++ ....++.|+.+ | +.-..-+...+.+|+.|+.++.. +-.....||.|..++++.-..
T Consensus 323 LiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 323 LCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHH
T ss_pred hhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHH
Confidence 99988 22233333333 3 21122344566778888876631 111235689999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
+|..++.+|..+. .+.....+ ...++-..++.+++.+..+.+
T Consensus 391 VR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 9999999998877 22211111 223445567777777776654
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0016 Score=69.67 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=38.8
Q ss_pred cccccCccccccC----Cee----cCCCcchhHHHHHHHHhcCC----------CCCCCCCCcCCC
Q 003339 239 DFCCPLSLELMTD----PVI----VASGQTYERAFIKKWIDLGL----------FVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~d----PV~----~~~G~ty~r~~I~~~~~~~~----------~~cP~t~~~l~~ 286 (828)
..-|+||...+.+ |-. ..|||.|-..||.+||+..+ .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999999988 543 36999999999999998521 369999998764
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.44 Score=49.12 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHH-hcCcHHHHHHHHcC-------C--C---HHHHHHHHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDMLHS-------S--E---TKIQENAVTALL 610 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~~GaI~~Lv~lL~s-------~--d---~~v~e~A~~aL~ 610 (828)
.+..++..|..+ +.+..|+.+|..=-..-++--..+= ..|.|..|++=+-+ + . ..-..+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 456667667544 4567777666542221122222222 23888887663311 1 1 222355666666
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHH
Q 003339 611 NLSINDNNKSAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 611 nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
-++.+++.+..+.++...--|..+|+..+ +..|..+++++..|...++. -..+...+++|..++.+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 67889999999999986666777776554 56899999999999875443 333456799999999999999999
Q ss_pred HHHHHHHHHHchhcchhHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh-------
Q 003339 684 KKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ------- 746 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~n~~~iv~--------~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~------- 746 (828)
|..|.-.+..+..++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++..|+++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999998877665544432 22333344433 57788999999999999999999998865
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 747 ENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.|... .++ .+++..+..-.-.+.|+
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 12222 222 35666666555554443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.52 Score=57.97 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
.++.++..+.+....++..|...+..+.+.-+.+-. ..++|.|+..|.+. ..+...-|+.+|..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 467778887777788888888788777664332222 34688999988765 5888899999999997643 2333
Q ss_pred H--HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003339 623 A--NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 623 ~--~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
. -...||.+...+-....+++..|..++..++..-+|+.. ...||.|++.+.++.. .-.++..|..-+...+
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~- 243 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE- 243 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-
Confidence 3 236778888888788899999999999888764343321 3678999999987643 3334444444333222
Q ss_pred HHHHHHhCc----HHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH--HhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 003339 701 KARIVQAGA----VKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI--GQENGIPVLVEVVEL-GSARGKENAAAAL 772 (828)
Q Consensus 701 ~~~iv~~G~----V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i--~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L 772 (828)
+++-. +|.|.+-| +....+..+++-+..|+|.--+....+ .-...+|.|-+.... ..|++|+.|..++
T Consensus 244 ----v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 244 ----VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred ----ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 22333 34444444 456777889999999999822222222 224567777666655 6899999888887
Q ss_pred HHHh
Q 003339 773 LQLC 776 (828)
Q Consensus 773 ~~L~ 776 (828)
-.|-
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.41 Score=51.11 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=110.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC----HHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchH
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA----IEPLIHVLQT-GSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~----l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
.+..|..++ +...+.+.-++-.|.-+..++..-..+.+.+. +..++..+.. +.+..+.-++.+++|+-.++..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 456666666 33334444555555544444444444433222 2233344432 34667889999999998888887
Q ss_pred HHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHH-HHhCcHHHHHHhc--CCChHHHHHHHHHHHHHh
Q 003339 661 IKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKHLVDLM--DPAAGMVDKAVAVLANLA 735 (828)
Q Consensus 661 ~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i-v~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa 735 (828)
..+... .+++.+...+.+.+..++..++++++|++...-..... ....++..+..++ ..+.+..-.++.+|.+|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 776653 55666666666678899999999999998832110000 0112444455555 357788899999999999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHH
Q 003339 736 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAAL 772 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L 772 (828)
..+.....+.+.-++...++-+.+ ..+++.+.|-.+|
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 865555555554344444444433 3566666554443
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.53 Score=50.20 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHchhcchhHHHHHH--hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch---hHHHHHhCCcHHH
Q 003339 679 GTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD---GRVAIGQENGIPV 752 (828)
Q Consensus 679 ~~~~~~~~Al~aL~nLs~~~~n~~~iv~--~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e---~r~~i~~~g~I~~ 752 (828)
..+..+..++++++|+-.+...+..+.. ..++..+...+ +.+..++..+..++.|++...- ..+.. ...+..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 3567789999999999998888877665 33555555554 4567777788888899886211 11110 113444
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 003339 753 LVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYF 817 (828)
Q Consensus 753 Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~-g~~r~r~kA~~lL~~L 817 (828)
+..+++. .+.+....+..+|.+|...+++..+.....|+-..+-.+... ..+++.+.|..+|.+|
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 4455543 688999999999999998877666655556666656666655 3578999998888653
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.02 Score=62.13 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=52.9
Q ss_pred CcccccCccccccCCee-cCCCcc--hhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003339 238 SDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
-.+.|||++..|+.||- ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+...++
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 45899999999999998 679997 9999888876553 346999999999999999887776653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.48 Score=49.38 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=120.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCc---chHHHHHh-h-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcc------h
Q 003339 631 LIHVLQTGSPEARENAAATLFSLSVIE---DNKIKIGR-S-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH------E 699 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~---e~k~~I~~-~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~------~ 699 (828)
|-.-|.+.++..|..|...|..+.... ........ . ...+.+-..+.+.+..+...|+.+|..++..- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 557788889999999998887654321 11111111 2 34556677888889999999999998876521 1
Q ss_pred hHHHHHHhCcHHHHHH-hc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003339 700 NKARIVQAGAVKHLVD-LM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~-LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
......-..+++.|++ .| +....++..++.+|..++........ .+..++..+.+.+++++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2222334667788886 35 66778888888887766542211111 24555666788999999999999988765
Q ss_pred CCH-Hh--HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 778 NSS-RF--CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 778 ~~~-~~--~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+ .. ....+ ..+++.|..++.+.++.+|..|..++.-+-.+
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 321 11 11111 12456778888999999999999988766554
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.24 E-value=1 Score=46.91 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=116.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-cHHHHHHHHcCCCHHHHHHHHHHHHHhhc---CCccHHHH
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG-AINILVDMLHSSETKIQENAVTALLNLSI---NDNNKSAI 622 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~G-aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~---~~~~k~~I 622 (828)
.+...|-+.+...+..|+..|......++ ..++...+ .++.+.--+.+.+..+...++.+|..+.. ....+-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 45566666677778888888887655433 23332222 23333323346788888888888776521 11111111
Q ss_pred HH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003339 623 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.+ .-.+|.|+.-+......+|..+-.+|..+... ......++.+++-+++.+.+.+..++..|..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 24689999999888888998888887766421 112356778888888999999999999998885533221
Q ss_pred HHHHHhCcH---HHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003339 702 ARIVQAGAV---KHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 702 ~~iv~~G~V---~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
....+ +.+..++ +.+..+++.|+.++..+-.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 24467 8889998 7888999999888875543
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.97 Score=48.48 Aligned_cols=200 Identities=15% Similarity=0.142 Sum_probs=147.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCcc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLH-SSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
.+.+..|+..|..=+.+.+..++.....+.+.....|...++. .--..|..++. .+++++--.+...|.....++..
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4678889999988888999999999888887665443222221 11222222222 24566667777888888788777
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHh---hCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR---SGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~---~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
...+...+.+..+.+....++-++...|..++..|-. +......... ..++...-.||.+++--+++.++..|..|
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 7778888888999999999999999999999887643 2222222222 15677888899999999999999999999
Q ss_pred hhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003339 695 SIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 695 s~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
-.+..|...|.. ..-+..++.+| +....++-+|..+......+|..-
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~ 288 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT 288 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence 999888877665 55778888888 677889999999999888766543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.17 Score=62.57 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCccHHHHHHc-----C
Q 003339 558 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNLSINDNNKSAIANA-----N 626 (828)
Q Consensus 558 ~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~------s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-----g 626 (828)
..+..|...|..|+..-. ..+.. -.++.+...+. +.+...++.|+.++..++..-.....-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456778888888887543 12211 13344444454 456778899999999987431100000000 1
Q ss_pred CH----HHHHHhhcCC---CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 627 AI----EPLIHVLQTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 627 ~l----~~Lv~lL~s~---~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.. ..++..|.++ .+.+|..|+++|..++..- .+.. -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 11 1233345555 7889999999999987642 1111 23567888888888889999999999999987421
Q ss_pred ---------hHHHHH--HhCcHHHHHHhcCCC----hH--HHHHHHHHHHHHhCC--chhHHHHHhCCcHHHHHHHHc--
Q 003339 700 ---------NKARIV--QAGAVKHLVDLMDPA----AG--MVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVVE-- 758 (828)
Q Consensus 700 ---------n~~~iv--~~G~V~~Ll~LL~~~----~~--v~~~Al~~LanLa~~--~e~r~~i~~~g~I~~Lv~lL~-- 758 (828)
.+..+. -..+++.|+.+++.. .. ..+.++.+|..++.. ++... ... ..++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHH
Confidence 122221 144566666666321 11 123444444444331 11111 111 13344444442
Q ss_pred --c-CCHHHHHHHHHHHHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 759 --L-GSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 759 --s-~s~~~ke~Av~~L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
+ .++..+..+..+|..++.. +++.... ....+++.+..+++.........+..++..+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2 3556777788888888876 3333332 2345678888888776554555555555444
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.024 Score=50.21 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.7
Q ss_pred CcccccCccc-cccCCee--cCCCcchhHHHHHHHHh
Q 003339 238 SDFCCPLSLE-LMTDPVI--VASGQTYERAFIKKWID 271 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dPV~--~~~G~ty~r~~I~~~~~ 271 (828)
+++.|+||.+ .+.+||. +.|||+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5688999996 5899999 99999999999999544
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=93.37 E-value=0.051 Score=58.84 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=53.8
Q ss_pred CCcccccCccccccCCee-cCCCcc--hhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003339 237 PSDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
.-.+.|||+...|+.||- ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 446899999999999998 679988 9999988877654 346999999999999999887777664
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.16 Score=52.50 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003339 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL 814 (828)
.+.|..++.+.+..++..++..+. .+.|..| ++.+..+|+.|..-|
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 345666667777777777666531 3556666 777888888876543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.12 E-value=1.3 Score=54.75 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHH----hcCcHHH----HHHHHcCC---CHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 554 STSLDTQREATAELRLLAKHNMDNRMVIA----NCGAINI----LVDMLHSS---ETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 554 s~~~~~q~~Al~~L~~La~~s~~nr~~i~----~~GaI~~----Lv~lL~s~---d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
+.++..+..|+..+..++.........+. .....+. ++..|.+. ++.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 45666777889999988753210000000 0022233 33445555 8899999999999997542 2221
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------hHHHHHhh--CChHHHHHhhcCCC---HH--HHHH
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED---------NKIKIGRS--GAIGPLVDLLGNGT---PR--GKKD 686 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e---------~k~~I~~~--g~I~~Lv~LL~s~~---~~--~~~~ 686 (828)
-...++.++..|.+.+..++.+|+.+|.+++...+ .+..+... ..++.|+.++.... +. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467788888888889999999999999886422 23333322 56777777777641 11 2345
Q ss_pred HHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-----C-CChHHHHHHHHHHHHHhCC--chhHHHHHhCCcHHHHHHHH
Q 003339 687 AATALFNLSIY-HENKARIVQAGAVKHLVDLM-----D-PAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVV 757 (828)
Q Consensus 687 Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-----~-~~~~v~~~Al~~LanLa~~--~e~r~~i~~~g~I~~Lv~lL 757 (828)
+..+|..++.. .+.... .-..+++.|+..+ + .+..+...++.+|..++.. ++....+ ....+|.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence 55566555431 111111 1122444555444 1 2445556677777777653 2222222 334578888888
Q ss_pred ccCCHHHHHHHHHHHHHHh
Q 003339 758 ELGSARGKENAAAALLQLC 776 (828)
Q Consensus 758 ~s~s~~~ke~Av~~L~~L~ 776 (828)
........+.+..++..+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 7655555666666655554
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.41 E-value=2 Score=44.28 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHHH
Q 003339 561 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSINDN--NKSAIANANAIEPLIH 633 (828)
Q Consensus 561 ~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~~--~k~~I~~~g~l~~Lv~ 633 (828)
..|+..|.-+|. +++.|..+.++...-.|-.+|+..+ +.++-.++.+++.|...++ .-..+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 457777777887 5689999999998888889997643 5577888888888875433 3455667899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--------hCChHHHHHh-hcCCCHHHHHHHHHHHHHchhcchhHHHH
Q 003339 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARI 704 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--------~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~~~~n~~~i 704 (828)
.++.|+.-.+.-|+-++..+-.++..-..+.. ..++..+|.- .+..+++..+..+++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999988887666554333321 1344444443 35668999999999999999999888766
Q ss_pred HH
Q 003339 705 VQ 706 (828)
Q Consensus 705 v~ 706 (828)
..
T Consensus 233 ~~ 234 (268)
T 2fv2_A 233 RQ 234 (268)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.48 E-value=7.9 Score=47.46 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh---c--CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH
Q 003339 638 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---G--NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 712 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~--s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~ 712 (828)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..|+++|..++..-..... .-..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIPPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 456788889988888875322111 12333333332 3 34789999999999998873221111 11235555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhC
Q 003339 713 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 713 Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~ 778 (828)
|+..|+ ..+...|+.++.++|. +.+..+.. ...+..|.+++.. .+...++.+..++..++..
T Consensus 551 l~~~l~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 551 LVRGLN--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhC--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 665553 6678999999999994 33444432 2356666777776 4678999999999888764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.84 E-value=11 Score=46.03 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChH
Q 003339 597 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---Q--TGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 670 (828)
Q Consensus 597 ~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL---~--s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 670 (828)
.+...++.|+.+|..++....... ...++.++.++ . .+.+.++..++.+|..++.. ..+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788899999998875422111 13344444433 3 24788999999999988752 1111111 14566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCC--chhHHHHH
Q 003339 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATI--PDGRVAIG 745 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~--~e~r~~i~ 745 (828)
.|+..|. +.++..|+.+|.+|+..-...-.-.-.+++..|..++ . .+......++.++..++.. ++......
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666662 6789999999999986432221112245666666666 3 2455666666666666542 23333322
Q ss_pred h---CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH----------------HhHHHHHhCCCHHHHHHhhcC--C
Q 003339 746 Q---ENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS----------------RFCSMVLQEGAVPPLVALSQS--G 802 (828)
Q Consensus 746 ~---~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~----------------~~~~~v~~~g~v~~L~~LL~~--g 802 (828)
+ ...+..+..++... ++..+...+..|..|+..-. +.... ....+++.+..++.. .
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~ 705 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVE 705 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccc
Confidence 2 11233333333332 44445555555555543100 00011 123477777777754 3
Q ss_pred CHHHHHHHHHHHHHhh
Q 003339 803 TPRAKEKAQALLSYFR 818 (828)
Q Consensus 803 ~~r~r~kA~~lL~~L~ 818 (828)
++.+.+.|..+++.+.
T Consensus 706 ~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAI 721 (971)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6688888888887654
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=89.37 E-value=11 Score=45.89 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=87.2
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh---cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH
Q 003339 636 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 712 (828)
Q Consensus 636 ~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~ 712 (828)
.+.+...++.++.++..++..-... ....++.++..+ .++++.++..++++|..++..-..... .-..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 4557888999999999887632110 012233444333 335788999999999998874221112 22478888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC
Q 003339 713 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 713 Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~ 779 (828)
|+..|+. ..+...|+.+|..+|. +.+..+.. ...+..|..++.. .+...++.+..++..++...
T Consensus 534 l~~~l~~-~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHALGN-PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCC-chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 8888844 7888999999999995 22222221 1234445555554 36788999999998887644
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=88.74 E-value=13 Score=40.60 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=108.2
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhh
Q 003339 547 KLVEDLKSTS-LDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLS 613 (828)
Q Consensus 547 ~Lv~~L~s~~-~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs 613 (828)
..++.|+++. .+.....+..|+.--+.+ ..--..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3445555442 222234555665333333 22323444 6788999988842 24578888999998887
Q ss_pred cCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--h-HHH----------HHhhCChHHHHHhhcCC
Q 003339 614 INDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED--N-KIK----------IGRSGAIGPLVDLLGNG 679 (828)
Q Consensus 614 ~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~-k~~----------I~~~g~I~~Lv~LL~s~ 679 (828)
.+..+...+... .++..|+..|.+....++..|+..|..++..++ + -.. .++..-+..+++.|+++
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 228 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence 776676666654 789999999999999999999999988877543 2 111 22335688899999874
Q ss_pred -CHHHHHHHHHHHHHchhcch---hH----HHHHHhCcHHHHHHh
Q 003339 680 -TPRGKKDAATALFNLSIYHE---NK----ARIVQAGAVKHLVDL 716 (828)
Q Consensus 680 -~~~~~~~Al~aL~nLs~~~~---n~----~~iv~~G~V~~Ll~L 716 (828)
+.+.+..++..+-.|....+ .| ..+...|..+.+-.+
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 66777666666555544322 22 334567777766654
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=88.65 E-value=10 Score=42.57 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=88.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 003339 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 625 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~ 625 (828)
..++... .++...++-|+..|..+.+.-++-... +|..++.++..+|..++.+|+..|-.++.+ ++...
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k---- 100 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR---- 100 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH----
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh----
Confidence 3344433 456888999999999999988776544 788999999999999999999999999988 44333
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..+.|+++|.+.+..-....-.+|..|-..+ ..+.+..|..-+..+++.++..++..|.
T Consensus 101 -iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 -VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3567899999877544333333333332111 1245555555555567777777777664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=87.98 E-value=27 Score=42.51 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=83.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChH
Q 003339 595 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---QTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 670 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL---~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 670 (828)
...+...++.++.+|..++..-... ....++.++..| ..+++.++..++.+|..++.. ..+.. . -..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHH
Confidence 4567888899999999987542110 012344444443 335678999999999888752 11221 1 237888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH--HhCcHHHHHHhcC---CChHHHHHHHHHHHHHhC
Q 003339 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV--QAGAVKHLVDLMD---PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv--~~G~V~~Ll~LL~---~~~~v~~~Al~~LanLa~ 736 (828)
.|+..|.+ +.++..|+.+|.+++..-. ..+. -..++..|..++. -+......++.+++.++.
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 99988865 7899999999999986321 1121 1334445555552 245667777777877776
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.88 E-value=3 Score=43.43 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=90.1
Q ss_pred cCCCHHHHHHHHHHHHHchhc-chhHHHHH--H-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHh-CCcH
Q 003339 677 GNGTPRGKKDAATALFNLSIY-HENKARIV--Q-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGI 750 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv--~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I 750 (828)
.+.+..+...++.+|..+... .+.-.++. + .-.+|.|++-+ ++...+++.+-.+|..++. +.- ...+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~ 169 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMT 169 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHH
Confidence 366777877777777776331 11101122 1 34778888877 6777888888887777653 111 1246
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 751 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV---PPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v---~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.+++-+++.+.+.++.++..|..+-...+-. ...++ +.+..++.+.+..+|..|..++--+-
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67777788999999999999998886543322 23468 99999999999999999998776443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=12 Score=40.20 Aligned_cols=201 Identities=10% Similarity=0.056 Sum_probs=140.6
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhh--CChHHHHHhhcCC--CHHHHHHHHHHHHHc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRS--GAIGPLVDLLGNG--TPRGKKDAATALFNL 694 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~--g~I~~Lv~LL~s~--~~~~~~~Al~aL~nL 694 (828)
..+...+.+..|+..|..=+-+.|..++.+..++-... ..+...++. .- +.++..|-.| ++++-..+-..|...
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34566789999999998889999999998888876532 222111111 11 3333333222 445555555566666
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCC---cHHHHHHHHccCCHHHHHHHH
Q 003339 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN---GIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g---~I~~Lv~lL~s~s~~~ke~Av 769 (828)
..+......++..+.+-.+.+.+ .++-++...|..++.-|-. |..-...+...+ ....+-.+|.+++.-+|..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 66777777788888888888887 4677888899998877655 666666666544 477788899999999999999
Q ss_pred HHHHHHhhCCHH--hHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003339 770 AALLQLCTNSSR--FCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 770 ~~L~~L~~~~~~--~~~~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..|..|-.+... .....+ ...-+..++.||.+....++-.|-.+.+.+...+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999998876442 222222 2334777788888888889999988888887654
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.5 Score=48.55 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=38.4
Q ss_pred cccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 003339 239 DFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 287 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 287 (828)
--.|.||.++..-=+.-+ ||+.|-+.|+.+|++.. ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 345999998877444433 89999999999999864 45799999887654
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.34 E-value=17 Score=36.74 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=88.4
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003339 583 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 650 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL 650 (828)
..+|+..|+.+|.. .+...+..++.+|..+..+..+...+.. .+++..|+..|.+....++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46788888888753 1356778889999888776666666665 47899999999999999999999888
Q ss_pred HHhccCcc--h-HHHH----------HhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcch---hH----HHHHHhCc
Q 003339 651 FSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE---NK----ARIVQAGA 709 (828)
Q Consensus 651 ~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~---n~----~~iv~~G~ 709 (828)
..++..++ . -..+ .+..-+..+++.|+.. +.+.+..++..+-.|....+ .| ..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88876543 2 2222 2234677788888754 55666555555554544322 22 23445666
Q ss_pred HHHHHHh
Q 003339 710 VKHLVDL 716 (828)
Q Consensus 710 V~~Ll~L 716 (828)
.+.+-.+
T Consensus 201 ~~il~~l 207 (233)
T 2f31_A 201 HQVLQEL 207 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.00 E-value=11 Score=38.20 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcch--h-HHHHHH---------
Q 003339 640 PEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE--N-KARIVQ--------- 706 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~--n-~~~iv~--------- 706 (828)
......++.+|..+..+...-..+... .++..|+..|.+.++.++..|+..|..+|..++ + ...+++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 456677888888887766655555554 889999999999999999999999999988654 4 444433
Q ss_pred -hCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchh---H----HHHHhCCcHHHHHHHHcc-CCHHHH
Q 003339 707 -AGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDG---R----VAIGQENGIPVLVEVVEL-GSARGK 765 (828)
Q Consensus 707 -~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~---r----~~i~~~g~I~~Lv~lL~s-~s~~~k 765 (828)
......+++.|. ...+....++..+-.+...++. | ..+...| +..+++.++. .++...
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMK 216 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHH
Confidence 235566777773 3345555556555555554432 3 3344444 4455555543 454433
|
| >3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A | Back alignment and structure |
|---|
Probab=83.69 E-value=6.9 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+..+..+.||+|+.+..+ .-+..||+|+.+-.
T Consensus 133 ~~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 133 IEIKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CCCSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 345677889988776641 23457999997643
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=83.49 E-value=2.5 Score=48.29 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+..|++.+....++++..++-.|+.+ ++- -.. -.++++.++.-|.+.|.+|+..|+.+|.-++ .+....
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL--L~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~--- 333 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYL-KEF--VED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD--- 333 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG--CCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH---
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHH-HHH--HHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH---
Confidence 455666666788999999999999888 211 111 1367888888999999999999999998777 221111
Q ss_pred HcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 624 NANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
..+..+...|.+. +......-++.|++...... .....+|.|...|++..+.++..++.+|..+.
T Consensus 334 --~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~-----~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--- 403 (800)
T 3oc3_A 334 --LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS-----IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--- 403 (800)
T ss_dssp --HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC-----CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---
T ss_pred --HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc-----cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---
Confidence 1233344444432 22333333444444332100 01277888999999999999999999998887
Q ss_pred hhHHHHHHhCcHHHHHH-h-cCCChHHHHHHHHHHH
Q 003339 699 ENKARIVQAGAVKHLVD-L-MDPAAGMVDKAVAVLA 732 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~-L-L~~~~~v~~~Al~~La 732 (828)
...+++.+.+ + ++++.++.+.+..++.
T Consensus 404 -------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 -------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2234445555 2 3888899998888885
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=82.43 E-value=36 Score=42.13 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=127.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc------CC
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI------ND 616 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~------~~ 616 (828)
.+..+++.+.+++.+.|.+|-..|..+.+.. ++...+..+|. +.+..++..|+..|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 4555666666666777888888887775532 45555666664 4588899999999988742 12
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003339 617 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
+.+..| ....+..+...-..+ ...++...+.++..++..+-.. ...+.++.|+.+++ .++..+..++.+|
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 223332 223333333322111 2456666666666665421110 12367888999886 5556677777787
Q ss_pred HHchhcc---------hhH-----HHHHH--hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003339 692 FNLSIYH---------ENK-----ARIVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 692 ~nLs~~~---------~n~-----~~iv~--~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
..|+..- ..+ ..+.. ..++..+..++ ..+..++..++.++......-.. ..+.+...++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 7776411 111 11222 11233333444 24567788888888877663332 224556667776
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 754 VEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 754 v~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 64332 3788899999999888865
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=81.97 E-value=22 Score=38.79 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=89.3
Q ss_pred cCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 625 ANAIEPLIHVLQT-----------GSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 625 ~g~l~~Lv~lL~s-----------~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.+|+..|+.+|.. .+......++.+|..+..+......+... .+|..|+..|.+..+.+++.|+..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5778888888741 12456778889999887766665555554 88999999999999999999999999
Q ss_pred Hchhcch--h-HHHHHH----------hCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCch---hH----HHHHhCCcH
Q 003339 693 NLSIYHE--N-KARIVQ----------AGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPD---GR----VAIGQENGI 750 (828)
Q Consensus 693 nLs~~~~--n-~~~iv~----------~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e---~r----~~i~~~g~I 750 (828)
.+|..++ + ...+++ ......++..|. ...+....++..+-.+...++ .| ..+...|.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl- 266 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL- 266 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH-
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh-
Confidence 9998653 3 444433 235677888884 344555555655555555433 23 33344444
Q ss_pred HHHHHHHcc
Q 003339 751 PVLVEVVEL 759 (828)
Q Consensus 751 ~~Lv~lL~s 759 (828)
..+++.++.
T Consensus 267 ~~il~~lr~ 275 (383)
T 3eg5_B 267 HQVLQELRE 275 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 444445654
|
| >2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A | Back alignment and structure |
|---|
Probab=81.40 E-value=0.93 Score=39.48 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=44.9
Q ss_pred CCCCCCC-cccccCccccccCCeecC-CCc-----chhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003339 232 SPVPIPS-DFCCPLSLELMTDPVIVA-SGQ-----TYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 232 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G~-----ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
..+.-|+ .+.|||++++.+.=|.+. ++. -||..++.+-...| ..=|.+|+|++...++
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASIIV 83 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTTEE
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhhEe
Confidence 3455554 689999999999999863 222 39999999999887 4579999999887654
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=80.56 E-value=40 Score=36.83 Aligned_cols=134 Identities=18% Similarity=0.253 Sum_probs=90.4
Q ss_pred cCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 584 CGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLF 651 (828)
Q Consensus 584 ~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~ 651 (828)
.+|+..|+.+|.. .+...+..++.+|..+..+..+...+... +++..|+..|.+....++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5788888887742 14567788899998887776666666654 78999999999888999988988888
Q ss_pred HhccCcc--h-HHHH----------HhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcch---h----HHHHHHhCcH
Q 003339 652 SLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE---N----KARIVQAGAV 710 (828)
Q Consensus 652 nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~---n----~~~iv~~G~V 710 (828)
.++..++ . -..+ .+..-+..+|+.|..+ +.+.+..++..+-.|....+ . +..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8777543 2 1111 2235677899988754 56666666655555544332 2 2345567777
Q ss_pred HHHHHhc
Q 003339 711 KHLVDLM 717 (828)
Q Consensus 711 ~~Ll~LL 717 (828)
+.|-.+-
T Consensus 206 ~il~~Lr 212 (386)
T 2bnx_A 206 QVLQELR 212 (386)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7765553
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.37 E-value=8.9 Score=43.01 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH
Q 003339 678 NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV 756 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l 756 (828)
.++...++.|+..|.....+-.. ....++..+++|+ +.+..++..|+.-|..+|.. +.... ++..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHH
Confidence 34688888888888876553332 3455677888988 57778888999999999987 44332 45688899
Q ss_pred HccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 757 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 757 L~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
|.+.++......-.+|..|...++. +.+..|+.-+..+++.+|+++...|+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 9988888888888888888877763 44556666666677888887776553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 828 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 3e-22 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-22 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-21 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-16 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-16 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-07 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-06 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-17 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-17 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 7e-08 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-16 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-08 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-04 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 3e-11 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 5e-11 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 6e-11 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 1e-09 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 8e-08 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 5e-07 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 5e-06 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 89.0 bits (220), Expect = 3e-22
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
P F CP+SLELM DPVIV++GQTYER+ I+KW+D G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 296 KALIANWCELNNVK 309
K+LIA WCE N ++
Sbjct: 65 KSLIALWCESNGIE 78
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.4 bits (243), Expect = 5e-22
Identities = 39/185 (21%), Positives = 56/185 (30%), Gaps = 20/185 (10%)
Query: 552 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 611
L S +AT L N + GAI LV +L + Q
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 612 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGP 671
+ + E E L L+ N+I I I
Sbjct: 424 QQFVEGVRM-------------------EEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464
Query: 672 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAV 730
V LL + ++ AA L L+ E I GA L +L+ G+ A AV
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524
Query: 731 LANLA 735
L ++
Sbjct: 525 LFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (219), Expect = 5e-19
Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 8/278 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 603
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 604 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663
L NLS + AI + I L+ +L + A TL +L + ++
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 664 GR-SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD--P 719
R +G + +V LL + L L E+K I+ +G + LV++M
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 720 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779
++ VL L+ + AI + G+ L + S R +N L L S
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---S 255
Query: 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
EG + LV L S A +LS
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.4 bits (217), Expect = 9e-19
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 21/205 (10%)
Query: 573 HNMDNRMVIANCGAINILVDMLHSSETK-IQENAVTALLNLSINDNNKSAIANANAIEPL 631
+ + + ++V +LH + + V + NL++ N + + AI L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 632 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691
+ +L + + + +E +++ G G AL
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG-------------------AL 443
Query: 692 FNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGI 750
L+ N+ I + V L+ P + A VL LA + AI E
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503
Query: 751 PVLVEVVELGSARGKENAAAALLQL 775
L E++ + AAA L ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (215), Expect = 1e-18
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQT-GSPEA 642
AI L +L+ + + A + LS + ++ AI + + ++ +Q E
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76
Query: 643 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENK 701
A TL +LS + + I +SG I LV +LG+ A T L NL ++ K
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 702 ARIVQAGAVKHLVDLMDPAAGMV 724
+ AG ++ +V L++
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKF 159
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (201), Expect = 8e-17
Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 26/282 (9%)
Query: 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETK 600
+E + LV+ L S ++ A L L +N N+M++ G I LV + + +
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323
Query: 601 IQENAVTALLNLSI------NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL- 653
+ + ++A+ + ++ +L S A L
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 654 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 713
++ N + GAI LV LL ++ + + +
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------- 435
Query: 714 VDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
V+ L LA R+ I N IP+ V+++ + AA L
Sbjct: 436 ----------VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
+L + + EGA PL L S A A+L
Sbjct: 486 ELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (191), Expect = 1e-15
Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 7/220 (3%)
Query: 608 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 666
A++NL IN + + +A AI L +L AA + LS E ++ I RS
Sbjct: 1 AVVNL-INYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 667 GAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMV 724
+ +V + N + A L NLS + E I ++G + LV L P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 725 DKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 783
A+ L NL +G + G + +V ++ + + L L +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 784 SMVLQEGAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRH 822
++L G LV + + +L
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 9e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ V+ L S + QR A L LA + + I GA L ++LHS +
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 605 AVTALLNLS 613
A L +S
Sbjct: 521 AAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 0.001
Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 49/322 (15%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ LV+ L S A L L H +M + G + +V +L+ + K
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162
Query: 605 AVTALLNLSINDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVIEDNKIK 662
L L+ + I A+ + + + + L LSV NK
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN---------------------- 700
I +G + L L + + R ++ L NLS
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 282
Query: 701 ------------------KARIVQAGAVKHLVDLMDPAAGMVDKAVAVL-------ANLA 735
K + Q G ++ LV + A D + +
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342
Query: 736 TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795
+ A+ G+PV+V+++ S A L++ + + ++GA+P L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 796 VALSQSGTPRAKEKAQALLSYF 817
V L + + +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQ 424
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (236), Expect = 3e-21
Identities = 45/299 (15%), Positives = 86/299 (28%), Gaps = 34/299 (11%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
+ K V+ L S Q ++ + + + G I LVD+L S +Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 605 AVTALLNLSI-NDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIK 662
A AL NL + NK N I + + +TG+ E ++ L++LS ++ K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 663 IGRSGAI---------------GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q 706
+ G P +A L NLS + +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG------ 760
+G + L+ + + N + ++
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 761 ----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 809
S + N L + + + A+ + L A +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 1e-16
Identities = 41/305 (13%), Positives = 91/305 (29%), Gaps = 32/305 (10%)
Query: 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKI 601
+ + AT LR L+ + + + G I+ L+ + +
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201
Query: 602 Q------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----------TGSPEAREN 645
+ EN + L NLS + + + N
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261
Query: 646 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE------ 699
L + S AI ++L+G +A +
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 700 -NKARIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ ++ + + L+ V + ++L+N++ P +G + P + ++
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLL 380
Query: 758 ELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKA 810
S +A + L + + + ++ L +S +P+A E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 811 QALLS 815
+ LLS
Sbjct: 441 RLLLS 445
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 3e-16
Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 15/169 (8%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHN------MDNRMVIANCGAINILVDMLHSSE 598
+R + + + D EA A + ++++ + + +L S
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG------SPEARENAAATLFS 652
+ + + + L N+S + + N + +L + S + +A T+ +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403
Query: 653 LSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE 699
L + S + +++L + +P+ + A L ++ E
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 8e-07
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 540 GIETQVRKLVED--LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS 597
R L S S D A +R L + +N ++++ SS
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431
Query: 598 ET-KIQENAVTALLNLSINDNNKSAI 622
+ K E A L ++ + + +
Sbjct: 432 ASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 809
IP V+ + + + A + C V Q G + LV L +S ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 810 AQALL 814
A L
Sbjct: 64 AAGAL 68
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.7 bits (185), Expect = 1e-17
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
IP C +S ELM +P I SG TY+R I++ + P TR L LIPN +
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 296 KALIANWCELN 306
K +I + N
Sbjct: 64 KEVIDAFISEN 74
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.6 bits (205), Expect = 3e-17
Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 7/287 (2%)
Query: 538 LSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHS 596
S ++ ++ ++ + L S + Q AT + R +L++ + V+ G + LV+ +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 597 SET-KIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 654
++ +Q A AL N+ S + +A+A+ I +L TGS E +E A L +++
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 190
Query: 655 VI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKH 712
D + + + A+ P++ L + P + A L NL + + V + A+
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 713 LVDLMDPAAGMVDKAVA--VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770
L L+ + + A+ LVE++ S + A
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
A+ + T + +V+ G +P L L S K++A +S
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.6 bits (127), Expect = 7e-08
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 17/183 (9%)
Query: 553 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612
S Q A + + N V+ N G + L +L S + I++ A + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 613 SI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR----SG 667
+ N A+ +AN I PL+ +L+ + ++ A + + S + I R G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417
Query: 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR------------IVQAGAVKHLVD 715
I PL DLL R + AL N+ E I +AG ++ + +
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477
Query: 716 LMD 718
Sbjct: 478 CQQ 480
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.7 bits (192), Expect = 6e-16
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 6/200 (3%)
Query: 532 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINIL 590
A+ ++ + V +V+ + S +L++Q +AT R LL++ I G I
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 591 VDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 648
V L ++ + IQ + AL N+ S A+ + AI I +L + E A
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121
Query: 649 TLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAA--TALFNLSIYHENKARIV 705
L +++ + + GAI PL+ LL + LS NK
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181
Query: 706 QAGAVKHLVDLMDPAAGMVD 725
AV+ ++ + D
Sbjct: 182 PLDAVEQILPTLVRLLHHND 201
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 54/282 (19%), Positives = 99/282 (35%), Gaps = 11/282 (3%)
Query: 545 VRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
+ K V L T Q E+ L +A + + + GAI + +L S I E
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
Query: 604 NAVTALLNL-SINDNNKSAIANANAIEPLIHVL-----QTGSPEARENAAATLFSLSVI- 656
AV AL N+ + + AI+PL+ +L T + N TL +L
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177
Query: 657 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKHLVD 715
+ LV LL + P D+ A+ L+ + + V+ G V LV
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237
Query: 716 LMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773
L+ + A+ + + + + V ++ ++ A +
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297
Query: 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
+ V+ G VP LV + + +++A ++
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 339
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.7 bits (127), Expect = 6e-08
Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 10/180 (5%)
Query: 549 VEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTA 608
V+ L +T L A + + + + + GA+ + +L + +T IQ+ A
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295
Query: 609 LLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR 665
+ N++ + + N + L+ VL + ++ AA + + + + + +
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNL-----SIYHENKAR--IVQAGAVKHLVDLMD 718
G I PL++LL + + A+ N+ + K I + G + + L
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 544 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQ 602
V LV L TQ+EA + ++ + + +CG I L+++L + +TKI
Sbjct: 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374
Query: 603 ENAVTALLNL-------SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 650
+ + A+ N+ + I ++ + + + + + + +
Sbjct: 375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 13/280 (4%)
Query: 551 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 610
DL + + R T L L ++ + A + LV +LH ++ ++ ++ A+
Sbjct: 154 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 213
Query: 611 NLSINDNNK--SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA 668
L+ N + + + + + T P A ++ ++ K+ +GA
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273
Query: 669 IGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDK 726
+ LL N +K+A + N++ + ++V G V LV ++ +
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333
Query: 727 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 778
A + N + + V + I L+ ++ + + A+ +
Sbjct: 334 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393
Query: 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 817
+ + M+ + G + + AL + + + L+ YF
Sbjct: 394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 41/154 (26%)
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IVQAGAVKHLVDLMDPAAGM 723
+ ++ +V + + + A A L + I++AG + V +
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL------ 65
Query: 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 783
G+ + P+ + +A AL + + +S
Sbjct: 66 ---------------------GKTDCSPI------------QFESAWALTNIASGTSEQT 92
Query: 784 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817
V+ GA+P ++L S E+A L
Sbjct: 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 3e-11
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNY 293
+ CP+ LEL+ +PV + + + K ++ G CP + + +L +
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 294 TVKALIANWCEL 305
L+ ++
Sbjct: 78 RFSQLVEELLKI 89
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 5e-11
Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 7/243 (2%)
Query: 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENA 605
E ++ + A L L NMDN +++LV L + ++ A
Sbjct: 21 TAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79
Query: 606 VTALLNLS-INDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKI 663
+ S + + A+ L+ +L R A + L ++ +
Sbjct: 80 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139
Query: 664 GRSGAIGPLV-DLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPA 720
++ + + K +A L NL + H E+K + G V+ LV L+
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199
Query: 721 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780
+ + + L +L T V +E + + + + L+ C
Sbjct: 200 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
Query: 781 RFC 783
+ C
Sbjct: 260 QTC 262
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 6e-11
Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 6/251 (2%)
Query: 575 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH- 633
M + + + + + +++ + +E A+ L +L N +N + + + L+
Sbjct: 7 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 66
Query: 634 VLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATAL 691
L+ G+ R AA + + S + + ++ GA+ L+ LL + A A+
Sbjct: 67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 126
Query: 692 FNLSIYHENKA---RIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748
L E + +V V A + L P+ + +
Sbjct: 127 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186
Query: 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 808
+ LV +V + E+ AL L T+ + + + + + E
Sbjct: 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 246
Query: 809 KAQALLSYFRN 819
+ Q L +
Sbjct: 247 EYQEELEFCEK 257
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 1e-09
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 294
+F P+ LM DPV++ S + T +R+ I + + P R L + PN
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNTE 77
Query: 295 VKALIANWCE 304
+K I W
Sbjct: 78 LKEKIQRWLA 87
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 8e-08
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 223 VMIKQSQICSPVPIPSDF-CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281
+ + Q Q + S F C + E D I G + + W + CP R
Sbjct: 6 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 65
Query: 282 QTLAHTTLIP 291
+ T I
Sbjct: 66 CEIKGTEPIV 75
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.1 bits (109), Expect = 5e-07
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 233 PVPIPSDF----CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288
V P+ F C + ++ DPV + + R I + + + CP R T
Sbjct: 13 AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
Query: 289 LIPNYTVKALI 299
L VK+ +
Sbjct: 73 LESP--VKSFL 81
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.4 bits (99), Expect = 5e-06
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 241 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 294
C +S ++ PV+ S +E++ +++++ P T + L+ ++
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIVP 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 828 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.89 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.88 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.87 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.86 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.86 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.81 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.72 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.71 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.48 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.45 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.44 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.38 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.99 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.93 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.79 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.65 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.58 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.55 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.53 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.49 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.39 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.34 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.24 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.1 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.07 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.07 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 97.99 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.88 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.73 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.72 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.51 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.38 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.38 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.38 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.29 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.26 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.13 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.09 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.05 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.84 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.48 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.28 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 87.91 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 87.73 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2e-21 Score=220.63 Aligned_cols=279 Identities=20% Similarity=0.215 Sum_probs=249.8
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.++. .+.++|..|++.|.+++..+......+.+.|+++.|+.+|.+++.++++.|+++|.||+.+ +..+
T Consensus 118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r 197 (503)
T d1wa5b_ 118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197 (503)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence 4678999999984 5788999999999999998888888899999999999999999999999999999999875 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
..+.+.|++++|+.++.+....++.+++++|.+|+..... .......++++.|+.++.+.+.+++..++++|.+|+...
T Consensus 198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~ 277 (503)
T d1wa5b_ 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 277 (503)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence 8999999999999999999999999999999999975443 333445689999999999999999999999999999855
Q ss_pred -hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 699 -ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 699 -~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
+....+++.|+++.|+.++ +++..+...|+.+|.+++...+ ....+.+.|+++.|..++.+.++.++..++++|.++
T Consensus 278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4557788999999999999 6778889999999999998554 455677889999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+.+++.....+.+.|+++.|+.++.+++..++..|.++|.++...
T Consensus 358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence 999998889999999999999999999999999999999888653
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.1e-22 Score=228.78 Aligned_cols=275 Identities=20% Similarity=0.207 Sum_probs=243.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...||.|++.|++.+..++..|+..|..|++.+ ..|..+.. .|+|+.|+.+|.. .++++++.|+.+|.+|+.+++++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 356999999999999999999999999999854 55655555 4889999999976 57899999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+++.|+++.|+.+|++++..++.+|+.+|.+|+.+.+ .+..+.+.|+|+.|+.+|+++++.++..++.+|.+|+. +
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988554 56777788999999999999999999999999999997 4
Q ss_pred chhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003339 698 HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.+++..+...|+++.|+.++ .....+...++++|.+++.+++.+..+.+.|+++.|+.++.+++..++.+|+++|.++
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 56777888999999999999 4556788999999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+..... .....|+++.|+.++.+++..++..|..+|..|...
T Consensus 255 s~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 255 SDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 865432 122347899999999999999999999999988643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=4.2e-21 Score=212.19 Aligned_cols=279 Identities=20% Similarity=0.220 Sum_probs=245.5
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|++ +++++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+++.++++.|+++|.|++.+ +..+
T Consensus 55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~ 134 (434)
T d1q1sc_ 55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134 (434)
T ss_dssp TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence 3679999999974 4688999999999999998888999999999999999999999999999999999999876 4567
Q ss_pred HHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 620 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..+.+.|+++.|+.++.... ......+++++.+++..... .......++++.|+.++.+++++++..|+++|.+
T Consensus 135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~ 214 (434)
T d1q1sc_ 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214 (434)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence 88889999999999998764 35667788889999876543 3333455889999999999999999999999999
Q ss_pred chhcch-hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003339 694 LSIYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~-n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
|+.... ....+...|+++.|++++ +++..++..++.+|.+++. .++.+..+.+.|+++.|+.++.+.++.+++.|++
T Consensus 215 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~ 294 (434)
T d1q1sc_ 215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 294 (434)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred cchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence 998654 555667899999999999 5778899999999999998 4456788889999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+|.+++.........+.+.|+++.|+.++.+++..++..|.++|.++...
T Consensus 295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence 99999999988888999999999999999999999999999999988654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2e-21 Score=221.99 Aligned_cols=276 Identities=24% Similarity=0.266 Sum_probs=244.3
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003339 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.|++.|+ ..+++.+..|+..|..|+. +++++..+.+.|+||.|+.+|.+++++++..|+++|.||+.+ +..+
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence 567999999997 5678999999999999987 678999999999999999999999999999999999999876 4467
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhc
Q 003339 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|++++|+.+|++++.+++..++.+|.+|+.. ++++..+...|+++.|+.+++.+ ...++..++.++.|++.+
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 7788999999999999999999999999999999875 45567777789999999999765 578899999999999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
.+++..+++.|+++.|+.++ +.+..+...++++|.+++...... ....|+++.|++++.++++.+++.|+.+|++|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence 99999999999999999999 677888999999999998644332 223467999999999999999999999999999
Q ss_pred hCCHHhHHHHHhCCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcc
Q 003339 777 TNSSRFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 777 ~~~~~~~~~v~~~g~v~~L~~LL~--~g~~r~r~kA~~lL~~L~~~ 820 (828)
.+++..+..+.+.|+++.|+.++. ++.+.+++.|..+|+.+...
T Consensus 295 ~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence 999988899999999999999885 45678899999999988643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1e-20 Score=209.01 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=241.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC-Ccc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-DNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~-~~~ 618 (828)
...|+.+++.+++++++.|..|+..|+++...+.. ....+.+.|++|.|+.+|.+ ++++++..|+++|.+++.. +..
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~ 91 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence 56799999999999999999999999988653332 35678899999999999965 5688999999999999865 457
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCC-----HHHHHHHHHHHH
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGT-----PRGKKDAATALF 692 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~-----~~~~~~Al~aL~ 692 (828)
+..+.+.|+++.|+.+|.+++.++++.|+++|.+|+.+ ++.+..+...|+++.|+.++...+ ......+++++.
T Consensus 92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 171 (434)
T d1q1sc_ 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 171 (434)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999875 456777888899999999998763 355677888999
Q ss_pred HchhcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhCCcHHHHHHHHccCCHHHHHHHH
Q 003339 693 NLSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 693 nLs~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av 769 (828)
+++...... ......++++.|+.++ +.+..++..++++|.+|+.+.. ....+.+.|+++.|++++.++++.++..|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al 251 (434)
T d1q1sc_ 172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251 (434)
T ss_dssp HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence 998865433 3345678899999998 5678899999999999998654 456667789999999999999999999999
Q ss_pred HHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 770 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 770 ~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.+|.+++.+++.....+++.|+++.|..++.+.++.+++.|.++|..+...
T Consensus 252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 999999999988888999999999999999999999999999999988654
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=4.1e-23 Score=176.09 Aligned_cols=75 Identities=57% Similarity=1.077 Sum_probs=72.1
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 003339 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
++|++|.||||+++|+|||+++|||+|||+||++|+..++.+||.|+.+++..+++||+.||++|++|+++||+.
T Consensus 4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 699999999999999999999999999999999999987788999999999999999999999999999999973
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=5.9e-20 Score=208.44 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=244.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-cHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-NKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~-~k~ 620 (828)
.+.++.|+..|.+++.+++..|++.|.+++..++.+|..+.+.|+++.|+.++.+.+..++..++++|.|++.+.. ...
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999987643 344
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003339 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.....++++.|+.++.+++.+++..++++|.+|+.... ....+.+.|+++.|+.++.+++..++..|+.+|.|++...+
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~ 320 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999987554 45667788999999999999999999999999999998655
Q ss_pred -hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003339 700 -NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 700 -n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
....+++.|+++.|..++ +++..++..++++|.|++. +++....+.+.|+++.++.++.+++..++..|+++|.+++
T Consensus 321 ~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~ 400 (503)
T d1wa5b_ 321 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400 (503)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHH
Confidence 445677899999999999 5678889999999999988 5566788889999999999999999999999999999998
Q ss_pred hCC---HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 777 TNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 777 ~~~---~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
... .+....+++.|+++.|+.++...++.+...+..+|..+-
T Consensus 401 ~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll 445 (503)
T d1wa5b_ 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 445 (503)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 754 345677889999999999999999998888888766653
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=5e-23 Score=176.39 Aligned_cols=77 Identities=34% Similarity=0.495 Sum_probs=73.1
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 003339 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
.++|++|.||||+++|+|||+++|||||||.||.+|+..++.+||.||++++..++.||..|+++|++|+++||+..
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~ 78 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 78 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCcC
Confidence 36899999999999999999999999999999999999887889999999999999999999999999999999853
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.5e-20 Score=203.00 Aligned_cols=280 Identities=20% Similarity=0.276 Sum_probs=228.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I 622 (828)
.||.||++|+++++++|..|++.|.+|+..++++|..+.+.|+||.|+.+|.+++++++..|+++|.||+. ++.++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999985 46789999
Q ss_pred HHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcch------------------------------------------
Q 003339 623 ANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDN------------------------------------------ 659 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~------------------------------------------ 659 (828)
.+.|+++.|+.++.+ .+.+++..|+++|.+|+..+..
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 999999999998865 4677888888888887654321
Q ss_pred --------------HHHHHh-hCChHHHHHhhcC----------------------------------------------
Q 003339 660 --------------KIKIGR-SGAIGPLVDLLGN---------------------------------------------- 678 (828)
Q Consensus 660 --------------k~~I~~-~g~I~~Lv~LL~s---------------------------------------------- 678 (828)
+..+.. .|+++.|+.++++
T Consensus 163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T d1xm9a1 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence 111111 2556666555421
Q ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHchhcch------
Q 003339 679 -----------------------------------------------------GTPRGKKDAATALFNLSIYHE------ 699 (828)
Q Consensus 679 -----------------------------------------------------~~~~~~~~Al~aL~nLs~~~~------ 699 (828)
.++..+..++.++.+++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (457)
T d1xm9a1 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence 122334456667777765322
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc------CCHHHHHHHHHHH
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL------GSARGKENAAAAL 772 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s------~s~~~ke~Av~~L 772 (828)
.+..+.+.|+++.|+.++ +++..++..++.+|.+|+.+++.+..+.+ ++++.++.++.. .++.++..|+.+|
T Consensus 323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L 401 (457)
T d1xm9a1 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence 234445689999999999 67788999999999999999999888875 678999998853 3467999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcccccc
Q 003339 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQRHGN 824 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~~~~~ 824 (828)
.+|+..+++.++.+++.|+++.|+.++.+. ++.+++.|..+|..|..+++-|
T Consensus 402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~ 454 (457)
T d1xm9a1 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence 999999988999999999999999999875 6889999999999998776544
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.4e-21 Score=169.13 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.5
Q ss_pred CCCCCCCcccccCccccccCCeecCCC-cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Q 003339 232 SPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 308 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~ 308 (828)
...++|++|.||||++||+|||+++|| |||||.||.+||..+ .+||.|+++++..+|+||..||+.|++|++++.-
T Consensus 15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~ 91 (98)
T d1wgma_ 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-CCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999876 599999999999865 6799999999999999999999999999999853
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-16 Score=166.40 Aligned_cols=221 Identities=20% Similarity=0.260 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHH
Q 003339 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIH 633 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~-lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~ 633 (828)
+.+.+..|+..|..|+. +.+++..+...|+++.|+. +|.+++++++..|+.+|.+++.+ +..+..+.+.|+++.|+.
T Consensus 30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 45677889999999996 6788899999999999886 78889999999999999999976 567888999999999999
Q ss_pred hhcC-CCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcH
Q 003339 634 VLQT-GSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAV 710 (828)
Q Consensus 634 lL~s-~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V 710 (828)
+|.+ .+..++..++++|.+|+.+ +.++..+...|+++.|+.+|++++..++..++++|.||+. +++++..+++.|++
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v 188 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence 9964 5788999999999999874 5567778888999999999999999999999999999987 67899999999999
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCC-cHHHH----HHHHcc-CCHHHHHHHHHHHHHHhh
Q 003339 711 KHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN-GIPVL----VEVVEL-GSARGKENAAAALLQLCT 777 (828)
Q Consensus 711 ~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g-~I~~L----v~lL~s-~s~~~ke~Av~~L~~L~~ 777 (828)
+.|+.+| +++..+++.|+++|.+|+. ++..+..+...+ +...+ .+.+.. .........+.-|++.|.
T Consensus 189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~~ 263 (264)
T d1xqra1 189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 263 (264)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 9999999 5778899999999999998 555555555433 23222 233332 233444456666666664
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.3e-16 Score=166.39 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHH
Q 003339 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLV 673 (828)
Q Consensus 596 s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~-lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv 673 (828)
..+.+.+..|+.+|.+|+.+.+++..+...|++++++. +|++++.+++..|+.+|.+++.+ +..+..+...|+++.|+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 34677889999999999988889999999999999885 78889999999999999999985 56788888899999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCc
Q 003339 674 DLLGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENG 749 (828)
Q Consensus 674 ~LL~s-~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~ 749 (828)
.+|.+ .++.++..|+++|.+|+. ++.++..++..|+++.|+.+| +.+..++..++.+|.+|+. +++.+..+.+.|+
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 99974 578999999999999998 456777889999999999999 6778899999999999987 7888999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCC-CH----HHHHHhhcCCC--HHHHHHHHHHHHHh
Q 003339 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG-AV----PPLVALSQSGT--PRAKEKAQALLSYF 817 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g-~v----~~L~~LL~~g~--~r~r~kA~~lL~~L 817 (828)
++.|+.++.++++.+++.|+++|.+|+..++.....+...+ +. ..+..++.... ....+.+..+++.+
T Consensus 188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~ 262 (264)
T d1xqra1 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 262 (264)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887766665432 22 22333333332 23445556666543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.4e-15 Score=161.81 Aligned_cols=238 Identities=22% Similarity=0.240 Sum_probs=191.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~ 662 (828)
+.||.|+.+|++++++++..|+++|.||+.+ +.+|..+.+.|+|++|+++|++++++++..|+++|.+|+. +++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999999999999874 7789999999999999999999999999999999999995 5678899
Q ss_pred HHhhCChHHHHHhhcC-CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc----------------CCChHHHH
Q 003339 663 IGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----------------DPAAGMVD 725 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL----------------~~~~~v~~ 725 (828)
+.+.|+++.|+.++.+ .+..++..|+++|.+|+.....+......|+.+.+..++ ..+..+..
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 9999999999999875 478899999999999999888877777766655544432 12456777
Q ss_pred HHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHc----------------------------------------------
Q 003339 726 KAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVE---------------------------------------------- 758 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~---------------------------------------------- 758 (828)
.++.+|.+++.+.+.+..+.. .|+++.++.++.
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 888888888887777665544 334555554432
Q ss_pred -----------------------------------------------------cCCHHHHHHHHHHHHHHhhCCHH----
Q 003339 759 -----------------------------------------------------LGSARGKENAAAALLQLCTNSSR---- 781 (828)
Q Consensus 759 -----------------------------------------------------s~s~~~ke~Av~~L~~L~~~~~~---- 781 (828)
..++..++.+++++.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence 12345566777778887765421
Q ss_pred -hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccc
Q 003339 782 -FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 782 -~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~ 822 (828)
....+.+.|+++.|+.++.++++.+++.|..+|..|.....
T Consensus 322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~ 363 (457)
T d1xm9a1 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence 23445578999999999999999999999999999987654
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2.8e-15 Score=118.42 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=47.7
Q ss_pred ccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 240 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+.||||+++|+|||++ .|||+|||.||.+|+.++ .+||+||++++.++|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence 5799999999999987 599999999999999975 579999999999999875
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=2e-14 Score=123.10 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=53.5
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC-CcHHHHHHH
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALI 299 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~i 299 (828)
+|.||||.++|+|||+++|||+||+.||++|++.++.+||.||.++...++. |...+.+.+
T Consensus 23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred CcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 3589999999999999999999999999999987777899999999988776 666665544
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-14 Score=129.55 Aligned_cols=67 Identities=18% Similarity=0.383 Sum_probs=59.3
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
+.|.||||+++|+|||+++|||+||+.||.+|+... ...||.||+++...++.||..++++++.+.+
T Consensus 20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999764 3479999999999999999888888887743
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.5e-14 Score=125.25 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=59.9
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHH
Q 003339 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~ 305 (828)
+++.|.||||+++|.|||++ +|||+||+.||.+|+. ..||.||.++...++.||..|+.+|+.+...
T Consensus 19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 86 (97)
T d1jm7b_ 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (97)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence 34678999999999999985 8999999999999984 3599999999999999999999999988543
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.7e-12 Score=106.29 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=45.7
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003339 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
...||||++.+.|||+++|||+||+.||.+|+..+..+||.||+++....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 34699999999999999999999999999999877778999999998754
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3e-11 Score=94.61 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=44.0
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003339 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+.+.||||++.|+|||+++|||+||+.||++| ..+||.||++++...-.|.
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~a 55 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPA 55 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCCC
Confidence 44799999999999999999999999999865 4679999999987665553
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.9e-10 Score=92.97 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=44.0
Q ss_pred CcccccCccccccCC-----eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003339 238 SDFCCPLSLELMTDP-----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP-----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
++..||||++.+..| ++++|||+||+.||.+|+..+..+||.||+++....+.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~ 59 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence 577899999876432 56799999999999999988777899999999776543
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.79 E-value=1e-09 Score=89.50 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=39.1
Q ss_pred ccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003339 242 CPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 242 CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
||||++.|.+|++ ++|||+|+..||.+|++.+ .+||.||.++.
T Consensus 8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~i~ 51 (68)
T d1chca_ 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-CcCCCCCcchH
Confidence 9999999999876 7999999999999999975 67999998765
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=6.2e-09 Score=79.97 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=39.2
Q ss_pred cccCccccccCC----eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 241 CCPLSLELMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 241 ~CpI~~~lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
-||||++-|.++ ++++|||+|++.||.+|+..++.+||.||+++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 599999988543 3468999999999999998776789999999875
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.1e-06 Score=95.52 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=146.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003339 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 665 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~ 665 (828)
.++.|..++.+++..+++.|+.+|..+....... . ...-.++.+..+.++.....+..|+..+..+...-..+ + .
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~-~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~--~-~ 162 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS-D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--V-K 162 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--H-H
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH-H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH--H-H
Confidence 3455555666667777777777777765432211 1 12223333344555555556666666665554321111 0 1
Q ss_pred hCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003339 666 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
...++.+..++++.++.+++.|+.++..++..-... .....+++.+..++ +++..++..|+.+|..++..-... .
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~ 238 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--H
Confidence 224677888899999999999999999988743322 23456777788877 677888888988888887521111 1
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.....++.+..++.+.+..+|..++.+|..++..-+ .......+++.+..++.+.++.+|..|...|..+..
T Consensus 239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 310 (588)
T d1b3ua_ 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 112357888899999999999999999999886432 122334578999999999999999999887776544
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=2.9e-06 Score=85.47 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003339 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
....|++.|+++++.++..|+..|..+.. ..+++.|+.+|.++++.++..|+.+|..+.........+
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~- 87 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV- 87 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-
Confidence 35789999999999999999999987642 246899999999999999999999999886543332222
Q ss_pred HcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHH
Q 003339 624 NANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 702 (828)
Q Consensus 624 ~~g~l~~Lv-~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~ 702 (828)
++.+. .++++.+..++..++.+|..+....... ....++.+...+.+.++.++..|+.++..+..
T Consensus 88 ----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~------ 153 (276)
T d1oyza_ 88 ----FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 153 (276)
T ss_dssp ----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch------
Confidence 23333 4567888999999999998876432211 11346677777777788888888777766432
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch----------------hHH----H---HHhCCcHHHHHHHHc
Q 003339 703 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD----------------GRV----A---IGQENGIPVLVEVVE 758 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e----------------~r~----~---i~~~g~I~~Lv~lL~ 758 (828)
...++.+..++ +.+..+...+..++..+..... .+. + +....+++.|++.+.
T Consensus 154 ----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~ 229 (276)
T d1oyza_ 154 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK 229 (276)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred ----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhC
Confidence 23334444444 2222222222222222211100 000 0 112346788888876
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 003339 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS 815 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~ 815 (828)
+ +.++..|+.+|..+.. .++++.|..++... +..++..|...|+
T Consensus 230 d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 230 K--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp S--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred C--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 4 3477788888877642 35788898888764 6789988887663
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.5e-06 Score=98.24 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=131.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
....+.+.+.+++.++.+|..|+..+..+++.-.. .......++.|..++.++++.++..|+.+|..++..-...
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-- 237 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--
Confidence 34567788888899999999999999999885322 1223467888999999999999999999998886432111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc--ch
Q 003339 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HE 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~--~~ 699 (828)
......++.+..++.+.+..+|..++.+|..+...-. ..+.....++.+..++.+.+..++..|+.+|..++.. ..
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 1223467888889988999999999999998864211 1233346789999999999999999999999988762 23
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 003339 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 733 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~Lan 733 (828)
......-..+++.+..++ +.+..++..+..++..
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~ 350 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhh
Confidence 333333455666666666 4445555544444433
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.49 E-value=2.4e-08 Score=77.46 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=39.8
Q ss_pred CCCcccccCccccccCC--e-ec-CCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003339 236 IPSDFCCPLSLELMTDP--V-IV-ASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP--V-~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
+-++..||||++-|.+. | .+ +|||+|+..||.+|+.. +.+||.||+++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 34677899999999763 3 34 69999999999999987 46899999875
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=1.5e-07 Score=84.27 Aligned_cols=52 Identities=10% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCCcccccCccccccCC------------------eecCCCcchhHHHHHHHHhcC----CCCCCCCCCcCCC
Q 003339 235 PIPSDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAH 286 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~ 286 (828)
..+.+..||||++-|.+| ++++|||.|+..||.+|+... +.+||.||..+..
T Consensus 21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 455677899999988764 347899999999999999853 4579999987644
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=1.5e-05 Score=86.85 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=187.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-
Q 003339 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN- 624 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~- 624 (828)
.+...+..++.-....+...+..++..+..+....-.. .....+-.+....+.+.+.-|+.+|..|...+..|..+..
T Consensus 126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~ 205 (477)
T d1ho8a_ 126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLH 205 (477)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHc
Confidence 34445556666666777777788877554443322111 2333444455678888999999999888888888888753
Q ss_pred -cCCHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCC-CHHH
Q 003339 625 -ANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNG-TPRG 683 (828)
Q Consensus 625 -~g~l~~Lv~lL~s-----------------~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~-~~~~ 683 (828)
...+++|+.+|+. .....+.+++-++|-||..++....+... +.|+.|+++++.. ...+
T Consensus 206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKv 285 (477)
T d1ho8a_ 206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKV 285 (477)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 4567777777743 12467899999999999988877777665 4589999999754 6899
Q ss_pred HHHHHHHHHHchhcch------hHHHHHHhCcHHHHHHhcC---CChHHHHHHHHH---H----HHHhC-----------
Q 003339 684 KKDAATALFNLSIYHE------NKARIVQAGAVKHLVDLMD---PAAGMVDKAVAV---L----ANLAT----------- 736 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~------n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al~~---L----anLa~----------- 736 (828)
.+.++.+|.||+.... ....|+..++++.+-.|.. .++++.+..-.+ | ..+++
T Consensus 286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg 365 (477)
T d1ho8a_ 286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK 365 (477)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 9999999999987421 2334566677765544442 455554432211 1 11222
Q ss_pred ----CchhH-HHHH--------hCC--cHHHHHHHHc----------cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCC
Q 003339 737 ----IPDGR-VAIG--------QEN--GIPVLVEVVE----------LGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791 (828)
Q Consensus 737 ----~~e~r-~~i~--------~~g--~I~~Lv~lL~----------s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~ 791 (828)
.|-.+ +.|. +.+ .+..|+++|. +.++.+..-||.=|..+|++.|..+..+-+.|+
T Consensus 366 ~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~ 445 (477)
T d1ho8a_ 366 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG 445 (477)
T ss_dssp CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred CCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCc
Confidence 22222 2222 122 4889999996 235677778888899999999988888888999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 792 VPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 792 v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
=..++.|+.+.++.+|..|..++.-+-
T Consensus 446 K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 446 KADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887553
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.10 E-value=1e-06 Score=69.28 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=42.0
Q ss_pred CcccccCccccccCCeecCC-----CcchhHHHHHHHHhc-CCCCCCCCCCcCCC
Q 003339 238 SDFCCPLSLELMTDPVIVAS-----GQTYERAFIKKWIDL-GLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~-----G~ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 286 (828)
+...|+||++-+.+|.+.+| +|.|.+.||.+|+.. ++.+||.||+++..
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 56779999999999988776 499999999999974 56789999998764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=0.00013 Score=72.83 Aligned_cols=205 Identities=10% Similarity=0.026 Sum_probs=134.9
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003339 583 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
+....+.|+.+|+++++.++..|+.+|..+.. ..+++.|+.+|++.+..++..|+.+|..+.........
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 34667889999999999999999999987631 24689999999999999999999999988654433222
Q ss_pred HHhhCChHHHHH-hhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 003339 663 IGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 663 I~~~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
+ ++.|.. ++++.++.++..|+.+|.+++..... .....++.+...+ +....+...++.++..+.
T Consensus 87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~----- 152 (276)
T d1oyza_ 87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN----- 152 (276)
T ss_dssp H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-----
Confidence 2 333433 46778999999999999998764332 1123556666666 556666666666555432
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHH----------------------HhCCCHHHHHHh
Q 003339 741 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV----------------------LQEGAVPPLVAL 798 (828)
Q Consensus 741 r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v----------------------~~~g~v~~L~~L 798 (828)
+...++.+..++...+..++..+..++..+..........+ ....+++.|+..
T Consensus 153 -----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~ 227 (276)
T d1oyza_ 153 -----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDE 227 (276)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred -----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHH
Confidence 23345666666666666666666655555544333211111 113467778877
Q ss_pred hcCCCHHHHHHHHHHHHHhh
Q 003339 799 SQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 799 L~~g~~r~r~kA~~lL~~L~ 818 (828)
+.+. .+|..|..+|..+.
T Consensus 228 l~d~--~vr~~a~~aL~~ig 245 (276)
T d1oyza_ 228 LKKN--TVYDDIIEAAGELG 245 (276)
T ss_dssp HTSS--SCCHHHHHHHHHHC
T ss_pred hCCh--HHHHHHHHHHHHcC
Confidence 7654 36677777777664
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.5e-06 Score=73.90 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=36.7
Q ss_pred ccCccccccCC------------------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003339 242 CPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 242 CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|+||++-|.+| ++++|||.|...||.+|++.+ .+||.||+++..
T Consensus 24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 85 (88)
T d3dplr1 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF 85 (88)
T ss_dssp CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCCE
T ss_pred CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCCCCCCcccc
Confidence 88888877762 346899999999999999975 689999998653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00012 Score=86.72 Aligned_cols=270 Identities=13% Similarity=0.057 Sum_probs=166.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Cc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSIN--DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~ 617 (828)
...++.+.+.+.+.++..+..|+..+..++....+. +.. ...++.|+..+.++++.++..|+++|..++.. +.
T Consensus 394 ~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~---~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 470 (888)
T d1qbkb_ 394 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG---MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 470 (888)
T ss_dssp HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHH---HTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHH---hcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 345677778888999999999999999888754322 222 25788899999999999999999999988642 22
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
.... .-...++.++..+.+.++.++..|+.+|.++.... .....+ ...++.|+..+..........+..++..++
T Consensus 471 ~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~ 547 (888)
T d1qbkb_ 471 PPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLA 547 (888)
T ss_dssp CHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2222 22357888999999999999999999999886421 111111 234667777777766665555555555554
Q ss_pred hc---chhHHHHHHhCcHHHHHHh------------------------cC------------------------------
Q 003339 696 IY---HENKARIVQAGAVKHLVDL------------------------MD------------------------------ 718 (828)
Q Consensus 696 ~~---~~n~~~iv~~G~V~~Ll~L------------------------L~------------------------------ 718 (828)
.. .-++..++ ..+++.++.. +.
T Consensus 548 ~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 626 (888)
T d1qbkb_ 548 DSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNA 626 (888)
T ss_dssp HHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31 00000000 0011111111 00
Q ss_pred -------CChHHHHHHHHHHHHHhC--CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC
Q 003339 719 -------PAAGMVDKAVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 789 (828)
Q Consensus 719 -------~~~~v~~~Al~~LanLa~--~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~ 789 (828)
.+......++.++..++. .......+.....++.+...+.+.++.+++.|..++..++...+......+.
T Consensus 627 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~- 705 (888)
T d1qbkb_ 627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA- 705 (888)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-
Confidence 112223333333333332 1111222333445777788888899999999999999888765433222211
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003339 790 GAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 790 g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..++.|..-+.++...++..|.+++.-+..
T Consensus 706 ~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~ 735 (888)
T d1qbkb_ 706 DFMPILGTNLNPEFISVCNNATWAIGEISI 735 (888)
T ss_dssp HHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 256777777777788888888888876643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00015 Score=77.15 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=169.5
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCc
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~ 617 (828)
...++.|++.+.+. +...+..++..+..+..........-.-...++.++..+.+. +.+++..|+.++.++.....
T Consensus 126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 205 (458)
T d1ibrb_ 126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205 (458)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence 46788899988754 455666677777766543222111111124567778777653 57899999999988864322
Q ss_pred c--HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 618 N--KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 618 ~--k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
. .........++.+...+.+++.+++..++.+|..+...... ...+ .......+...+.+.+..++..|+..+..
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN 284 (458)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 11112223456677788888999999999999888642111 1111 11223445566677788899999988888
Q ss_pred chhcchhHH---------------------HHHHhCcHHHHHHhcC--------CChHHHHHHHHHHHHHhCCchhHHHH
Q 003339 694 LSIYHENKA---------------------RIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 694 Ls~~~~n~~---------------------~iv~~G~V~~Ll~LL~--------~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
++....... ...-...++.+.+.+. .+..+...|..++..++..... .+
T Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~ 362 (458)
T d1ibrb_ 285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 362 (458)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence 765321111 1112234445555441 1123556666666666652111 11
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~-~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
. ...++.+.+.+.+.++..|+.|+.+|..++.+. +...... -..+++.|+..+++.++++|..|.++|..+...
T Consensus 363 ~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 363 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1 124567777788899999999999999988653 2111111 135789999999999999999999999877654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=4.3e-05 Score=93.17 Aligned_cols=271 Identities=11% Similarity=0.103 Sum_probs=174.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
.+|..|++.+.+.+++.|.-|+..|...-..+...-..-....+++.|+.+|.+.+++||..|+.+|..|...-... .
T Consensus 3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~ 80 (1207)
T d1u6gc_ 3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q 80 (1207)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--h
Confidence 36888999999999999999998777543321110000011236889999999999999999999999987543221 1
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc----CcchH--HHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHch
Q 003339 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSV----IEDNK--IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLS 695 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~----~~e~k--~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs 695 (828)
+ ...++.|+..+.+++...+..+..+|..+.. ..... ........++.+...+... +..++..|+.+|..+.
T Consensus 81 ~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~ 159 (1207)
T d1u6gc_ 81 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159 (1207)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 1 2356777877777777778777777765532 11110 1111123445555555443 6788889999988876
Q ss_pred hcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003339 696 IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 773 (828)
Q Consensus 696 ~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~ 773 (828)
...+.-..-....+++.|+..+ +++..++..|+.+|..|+..-... . -...++.+++.+. +.+...+..++.++.
T Consensus 160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~--~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~ 236 (1207)
T d1u6gc_ 160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 236 (1207)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5322110001234566677666 677888899999999998743221 1 1235677776664 455666777888888
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.++...+...... -..+++.+...+...++.+|+.|..++..+...
T Consensus 237 ~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 237 AISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 8887654311100 145788999999999999999999888877543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00013 Score=86.38 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=153.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Ccc
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~~ 618 (828)
...++.|+..+++.++.+|..|++.|..++..... .... .-...++.|+..+.+.++.+++.|+.+|.++... +..
T Consensus 435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l 513 (888)
T d1qbkb_ 435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 513 (888)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999988752211 1111 1236888999999999999999999999998632 111
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CcchHHHHHh-----------------------hCChHHH
Q 003339 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV---IEDNKIKIGR-----------------------SGAIGPL 672 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~---~~e~k~~I~~-----------------------~g~I~~L 672 (828)
...+ ...++.|+..+.......+..+..++..++. ..-.+..+.. ...+..+
T Consensus 514 ~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i 591 (888)
T d1qbkb_ 514 VPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 591 (888)
T ss_dssp GGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred hhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1110 1234555666665554444444433333321 0000000000 0001111
Q ss_pred HHhhcCC------------------------------------CHHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHH
Q 003339 673 VDLLGNG------------------------------------TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLV 714 (828)
Q Consensus 673 v~LL~s~------------------------------------~~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll 714 (828)
+..+... +......++.++..+.. .......+.....++.+.
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~ 671 (888)
T d1qbkb_ 592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 671 (888)
T ss_dssp HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence 1111111 12233333334444332 111111122234566666
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCH
Q 003339 715 DLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 792 (828)
Q Consensus 715 ~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v 792 (828)
..+ +.+..+++.|+.++..|+.. ...-...+ ...++.|.+-+.+....++.+|++++..++...++...-.+ ..++
T Consensus 672 ~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il 749 (888)
T d1qbkb_ 672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVL 749 (888)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH
Confidence 666 56678888898888888762 22211111 12466666767777889999999999999876543211111 2468
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 003339 793 PPLVALSQSGT--PRAKEKAQALLSYFR 818 (828)
Q Consensus 793 ~~L~~LL~~g~--~r~r~kA~~lL~~L~ 818 (828)
+.|+.++++.+ ..+++.+..+|..|.
T Consensus 750 ~~L~~il~~~~~~~~v~~n~~~~lgrl~ 777 (888)
T d1qbkb_ 750 HQLVEIINRPNTPKTLLENTAITIGRLG 777 (888)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 88999998763 457788888776553
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.51 E-value=0.0022 Score=69.43 Aligned_cols=224 Identities=14% Similarity=0.164 Sum_probs=153.7
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcC-----------------CCHHHHHHHHHHHHHhh
Q 003339 553 KSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHS-----------------SETKIQENAVTALLNLS 613 (828)
Q Consensus 553 ~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s-----------------~d~~v~e~A~~aL~nLs 613 (828)
.+++.+.+.-|+.++..+.+ .+..|..+.. ...++.|+.+|.. .+.+++.+++-++.-|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 56777888888899998888 4578887754 3567777777643 13478899999999999
Q ss_pred cCCccHHHHHHc--CCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcc--h----HHHHHhhCChHHHHHhhcCC---CH
Q 003339 614 INDNNKSAIANA--NAIEPLIHVLQTG-SPEARENAAATLFSLSVIED--N----KIKIGRSGAIGPLVDLLGNG---TP 681 (828)
Q Consensus 614 ~~~~~k~~I~~~--g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e--~----k~~I~~~g~I~~Lv~LL~s~---~~ 681 (828)
.++.....+.+. +.|+.|+.+++.. ...+..-++++|.|+..... + ...++..++++. +..|... ++
T Consensus 254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~De 332 (477)
T d1ho8a_ 254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDE 332 (477)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSH
T ss_pred cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCH
Confidence 987777766665 4588899988654 57788899999999976422 2 223444565554 4555433 44
Q ss_pred HHHHHHHH-------HHHHchhcchhHHHH------------------------HH--hCcHHHHHHhcC----------
Q 003339 682 RGKKDAAT-------ALFNLSIYHENKARI------------------------VQ--AGAVKHLVDLMD---------- 718 (828)
Q Consensus 682 ~~~~~Al~-------aL~nLs~~~~n~~~i------------------------v~--~G~V~~Ll~LL~---------- 718 (828)
++..+--. -+..|++.++.+..+ -+ ..++..|+++|+
T Consensus 333 dl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~ 412 (477)
T d1ho8a_ 333 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 412 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccccc
Confidence 43332111 122344333222221 11 236788888883
Q ss_pred -CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003339 719 -PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 719 -~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
.++.+..-||.=++.++. +|.||..+-+.|+=..++++|.+.++.+|.+|..++..+..+
T Consensus 413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 123345556667888888 999999998899999999999999999999999999877653
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00059 Score=82.75 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=150.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-c-
Q 003339 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-D-N- 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~-~- 617 (828)
.+..++.|++.|.+.++++|..|+.+|..|+..-++... ...++.|+..+.+++..++..+..+|..+... + .
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~ 118 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 118 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence 456899999999999999999999999999876543321 24577888878777888888888887665321 1 1
Q ss_pred ---cHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003339 618 ---NKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 618 ---~k~~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..........++.+...+.. .+..++..++.+|..+......-..-....+++.|+..|.+....+++.|+.+|..
T Consensus 119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~ 198 (1207)
T d1u6gc_ 119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198 (1207)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 11111122344455555544 45778888888888775321100000012457778888889999999999999999
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHccCCHHHHHHHH
Q 003339 694 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s~s~~~ke~Av 769 (828)
|+..-... .-...++.++..+ +.....+..++.+|..++..... .+.. ...++.+++.+...++.+++.|.
T Consensus 199 l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~al 273 (1207)
T d1u6gc_ 199 LVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCI 273 (1207)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred HHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 97743221 1234566677655 33333444566666666542111 1222 34689999999999999999999
Q ss_pred HHHHHHhhCCH
Q 003339 770 AALLQLCTNSS 780 (828)
Q Consensus 770 ~~L~~L~~~~~ 780 (828)
.++..++...+
T Consensus 274 ~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 274 QAFESFVRRCP 284 (1207)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHhCh
Confidence 99998877543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.38 E-value=0.0015 Score=74.82 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=163.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCcc--
Q 003339 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNN-- 618 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~-- 618 (828)
+.++.|...+.+++++++.+|-..|..+...+. .+++..|+..+.+. +..++..|+..|.|.......
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 445555565778899999999999988876432 24677888888653 567888888888776432211
Q ss_pred HHH----HH-------HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHH
Q 003339 619 KSA----IA-------NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKD 686 (828)
Q Consensus 619 k~~----I~-------~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~ 686 (828)
... .. ....-..++..|.+++..++..++.++..++..+-... .....++.|+..+.+. +...+..
T Consensus 77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~ 154 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRA 154 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHH
Confidence 000 00 01123456777888888899988888888764221100 0013567777777765 4567778
Q ss_pred HHHHHHHchhcchhHHHHHHhC---cHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHH--HHhCCcHHHHHHHHc
Q 003339 687 AATALFNLSIYHENKARIVQAG---AVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVA--IGQENGIPVLVEVVE 758 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G---~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e~r~~--i~~~g~I~~Lv~lL~ 758 (828)
|+.+|..++..-+......... .+..++..+ +.+..++..|+.+|.++...-..... ......++.|...+.
T Consensus 155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (861)
T d2bpta1 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ 234 (861)
T ss_dssp HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence 8889988876432221111122 233333333 34567888899999888763322111 111234677788888
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003339 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
..++.++..|+.+|..++...++.....+..-+...+.....+.++.++..|..++..+.
T Consensus 235 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~ 294 (861)
T d2bpta1 235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 899999999999999998765433222222222233344555667888888887776553
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0011 Score=70.04 Aligned_cols=254 Identities=14% Similarity=0.134 Sum_probs=155.6
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~-~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
...++.++..+.+. +.+++..|+..+..+.......-. ........+.|..++.+++++++..++.+|..+... ..
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 45678888888743 577889999999888764332211 111224566777788888999999999999888532 11
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH---------------------HHHHhhCChHHHHHhh
Q 003339 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK---------------------IKIGRSGAIGPLVDLL 676 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k---------------------~~I~~~g~I~~Lv~LL 676 (828)
.-...+.......+...+.+.+.+++..|+..+..++...... ........++.+...+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 1000111122233455667778888888888877765321100 0011112344555554
Q ss_pred cC-------CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH--HHHHh
Q 003339 677 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR--VAIGQ 746 (828)
Q Consensus 677 ~s-------~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r--~~i~~ 746 (828)
.. .....+..|..++..++...... + -..+++.+...+ +++..+++.|+.+|..++...... ... -
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~-~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l 405 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V 405 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--H-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHh--h-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-H
Confidence 32 12357778888888876633211 1 123555666666 567788889999999988643221 111 1
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003339 747 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
...++.|+..+.+.++.+|..|+++|..++..-++ .....-.+++|+..+-.|
T Consensus 406 ~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~---~~~~~~~l~~ll~~ll~g 458 (458)
T d1ibrb_ 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE---AAINDVYLAPLLQCLIEG 458 (458)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG---GCCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc---ccchhhHHHHHHHHHhCc
Confidence 35689999999999999999999999998864321 111123467766655443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.29 E-value=1.8e-05 Score=69.33 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=82.3
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHH
Q 003339 595 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD 674 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~ 674 (828)
.++++.++..|+.+|..+. ..+++.|+..|++++..++..|+.+|.++. ..++++.|+.
T Consensus 2 ~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~ 60 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIK 60 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHh
Confidence 3455556666666665442 246889999999999999999999988663 2356899999
Q ss_pred hhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHH
Q 003339 675 LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLA 732 (828)
Q Consensus 675 LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~La 732 (828)
+|++.++.++..|+.+|..+. ..++++.|..++ +++..++..|+.+|.
T Consensus 61 ~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 61 LLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999998763 245678888888 677888888887763
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.13 E-value=0.00028 Score=61.37 Aligned_cols=88 Identities=26% Similarity=0.296 Sum_probs=75.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
.+++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|++.++.++..|+.+|..+.
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------- 81 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 81 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence 46888999999999999999999997663 1246889999999999999999999998763
Q ss_pred hhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 665 RSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 665 ~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..++++.|..++++.++.++..|+.+|.
T Consensus 82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3467889999999999999999998874
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=9.4e-05 Score=63.09 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=33.6
Q ss_pred ccccCcccccc--C-CeecCCCcchhHHHHHHHHhc----CC---CCCCCCCCc
Q 003339 240 FCCPLSLELMT--D-PVIVASGQTYERAFIKKWIDL----GL---FVCPKTRQT 283 (828)
Q Consensus 240 f~CpI~~~lm~--d-PV~~~~G~ty~r~~I~~~~~~----~~---~~cP~t~~~ 283 (828)
..||||++-+. + |++.+|||.||+.||.+|+.. +. -+||.|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 59 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence 45999998874 3 455689999999999999963 22 259987643
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.016 Score=66.23 Aligned_cols=274 Identities=12% Similarity=0.057 Sum_probs=166.6
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 003339 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 615 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~ 615 (828)
.+.++.|++.+.++ +...+..++..|..+++.-. ...+.. ...++.++..+.+. +.+++..|+.++.++...
T Consensus 127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~--~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~ 204 (876)
T d1qgra_ 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence 46789999998754 35667778888888876321 112222 25677888888654 577888999988776432
Q ss_pred CccH--HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 616 DNNK--SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 616 ~~~k--~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.... ......-.++.+...+..++.+++..+..+|..+... .+.-...........+...+.+....+...++..+.
T Consensus 205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1110 0011112456677778888999999999999888652 222112222344555666777888888888888777
Q ss_pred HchhcchhH---------------------HHHHHhCcHHHHHHhc-C-------CChHHHHHHHHHHHHHhCCchhHHH
Q 003339 693 NLSIYHENK---------------------ARIVQAGAVKHLVDLM-D-------PAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 693 nLs~~~~n~---------------------~~iv~~G~V~~Ll~LL-~-------~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
.++...... ........++.+...+ . ....+...|..+|..++..... .
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~ 362 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--h
Confidence 776522111 0111123344444444 1 1123555566666555542111 0
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+. ...++.+.+.+.+.+...++.++.++..+..........-.-...++.+...+.+.++++|..|.+++..+...
T Consensus 363 ~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 11 11245556666778999999999998887765422211111234688899999999999999999988877553
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.84 E-value=0.023 Score=64.65 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=162.1
Q ss_pred hhhHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhcC
Q 003339 541 IETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLH--SSETKIQENAVTALLNLSIN 615 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~-~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~--s~d~~v~e~A~~aL~nLs~~ 615 (828)
+.+.++.|++.+.+.+ ...+..|+..|..++.........+.. ...+..++..+. ..+..++..|+.+|.++...
T Consensus 132 wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3568899999998654 456667888888887543221111111 022333333333 34688999999999887543
Q ss_pred C-cc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-c-hHHHHHhhCChHH-HHHhhcCCCHHHHHHHHHH
Q 003339 616 D-NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D-NKIKIGRSGAIGP-LVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 616 ~-~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e-~k~~I~~~g~I~~-Lv~LL~s~~~~~~~~Al~a 690 (828)
- .+ .........++.+...+++++.+++..+..+|..+.... + ....+ . ..+.. +....++.++.++..++..
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~l~~l~~~~~~~~~~~v~~~~~~~ 289 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-E-QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-H-HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHhcCccHHHHHHHHHH
Confidence 1 11 111112235677888889999999999999998886421 1 11111 1 12333 3445566788999999998
Q ss_pred HHHchhcchhHHH-HH----------------HhCcHHHHHHhc-C-------CChHHHHHHHHHHHHHhCCchhHHHHH
Q 003339 691 LFNLSIYHENKAR-IV----------------QAGAVKHLVDLM-D-------PAAGMVDKAVAVLANLATIPDGRVAIG 745 (828)
Q Consensus 691 L~nLs~~~~n~~~-iv----------------~~G~V~~Ll~LL-~-------~~~~v~~~Al~~LanLa~~~e~r~~i~ 745 (828)
+..++........ .. -...++.+...+ . .+......+..+|..++...... +.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 367 (861)
T d2bpta1 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--IL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--hh
Confidence 8888664322111 11 122455555554 1 11234445555555554321110 00
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003339 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.-..+.+...+.+.+...++.|+.++..++.........-.-...++.+...+.+.++.+|..|.+++..+...
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 01133444555678899999999999998876532221111234688899999999999999999988876543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.021 Score=65.37 Aligned_cols=261 Identities=14% Similarity=0.074 Sum_probs=163.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC-Ccc-HHH
Q 003339 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIN-DNN-KSA 621 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~-~~~-k~~ 621 (828)
-.+++..-+++.+.+.+|-..|..+.+.+. .|++..|+..+.+. +..++..|+-.|.|.-.. ... +..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~ 75 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhh
Confidence 345555668898999999999988876431 25677888888553 577888888888886432 111 111
Q ss_pred H----------HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC--CHHHHHHHHH
Q 003339 622 I----------ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAAT 689 (828)
Q Consensus 622 I----------~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~ 689 (828)
. ........++..|.+.+. .+..++.++..++..+-... ...+.++.|+..+.++ +...+..++.
T Consensus 76 ~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~ 152 (876)
T d1qgra_ 76 YQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 0 011233456777766553 34455666666643211000 0136788888888654 4678888899
Q ss_pred HHHHchhcc-hhHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHH--HHhCCcHHHHHHHHccCCHH
Q 003339 690 ALFNLSIYH-ENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVA--IGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 690 aL~nLs~~~-~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e~r~~--i~~~g~I~~Lv~lL~s~s~~ 763 (828)
+|..++..- .....-.-..+++.++..+ +.+..+...|+.++.++......... ....-.++.+...+...++.
T Consensus 153 ~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 232 (876)
T d1qgra_ 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (876)
T ss_dssp HHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 998887532 2111111244667777766 24467788888888777653222111 11112456677777888999
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003339 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
++..|+.+|..++...++.....+...+.+.+.....+..+.++..|...+..+
T Consensus 233 v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (876)
T d1qgra_ 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999987765554444555566667777777788777777665544
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.25 Score=50.09 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=152.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH----HHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 003339 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV----IANC-GAINILVDMLHSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~----i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
.+.+..|+..|..-+.+.+..++.....+-+.....|.. +... ..+..|+.-- +++++--.+...|.....++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 145 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhH
Confidence 467888999998888999999999999888876655533 3322 3334444333 46667777888888888888
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHh-h--CChHHHHHhhcCCCHHHHHHHHHHHH
Q 003339 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR-S--GAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~-~--g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.-...|.....+..+.+....++-++...|..++..|-. +......... . .++...-.||.+++--+++.++..|.
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 888888888899999999999999999999999987654 3332222222 2 56777888999999999999999999
Q ss_pred HchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 003339 693 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 693 nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
.|..+..|...|.. ..-+..++.+| +....++-+|..+......+|..
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK 278 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 278 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence 99999988877654 45778888888 67788999999999998887654
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.28 E-value=0.014 Score=57.67 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.4
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHH
Q 003339 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 648 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~ 648 (828)
-.+..|..+++++++.|+..|+..|. .+.|..++..++..++..++.
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~ 112 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVAD 112 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHh
Confidence 34667788888888988888875431 133555556666666655554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=8.9 Score=38.26 Aligned_cols=196 Identities=14% Similarity=0.073 Sum_probs=146.6
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccH----HHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 003339 582 ANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNK----SAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSV 655 (828)
Q Consensus 582 ~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~-~~k----~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~ 655 (828)
...+.+..|+..|..=+-+.+..++.+..++-... .++ ..+... ..+..|+.-.. ++++...+-..|.....
T Consensus 66 ~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik 143 (330)
T d1upka_ 66 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR 143 (330)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT
T ss_pred HHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHh
Confidence 34578889999998889999999999999986542 222 334432 34444544443 35556667777788888
Q ss_pred CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhC---cHHHHHHhcC-CChHHHHHHHHH
Q 003339 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAG---AVKHLVDLMD-PAAGMVDKAVAV 730 (828)
Q Consensus 656 ~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G---~V~~Ll~LL~-~~~~v~~~Al~~ 730 (828)
++.....|.....+..+.++++.++=++..+|..++..|.. ++.....++... .+...-.+|. ++--++..++.+
T Consensus 144 ~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL 223 (330)
T d1upka_ 144 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 223 (330)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 88888888888888889999999999999999999998876 445555565533 5556666774 455567889999
Q ss_pred HHHHhCCchhHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003339 731 LANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 731 LanLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
|+.|.....+...|.. ..-+..++.+|++.+..++-.|.-+.--...+.
T Consensus 224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence 9999998888777654 224899999999999999999999987777654
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.91 E-value=8.7 Score=38.81 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=93.2
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003339 583 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 650 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL 650 (828)
..+|+..|+.+|.. .+...+..++.+|..+..+..+...+.. ..++..|+..|.++...++..|+.+|
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL 122 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence 45678888887731 1356778899999888777666666655 48899999999999999999999999
Q ss_pred HHhccCc---c-hH---------HHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcch---h----HHHHHHhCc
Q 003339 651 FSLSVIE---D-NK---------IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE---N----KARIVQAGA 709 (828)
Q Consensus 651 ~nLS~~~---e-~k---------~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~---n----~~~iv~~G~ 709 (828)
..++... + .. ....+.+-+..+++.|+.+ +.+.+..++..+-.|....+ . +..+...|.
T Consensus 123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl 202 (343)
T d2bnxa1 123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 202 (343)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCCh
Confidence 8887542 1 11 2233447789999999876 56666666666655555322 2 234556777
Q ss_pred HHHHHHhc
Q 003339 710 VKHLVDLM 717 (828)
Q Consensus 710 V~~Ll~LL 717 (828)
.+.+-.+=
T Consensus 203 ~~il~~l~ 210 (343)
T d2bnxa1 203 HQVLQELR 210 (343)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 76655543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=87.73 E-value=0.096 Score=51.34 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-----HHhhc-cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHH-----HHHhh
Q 003339 545 VRKLVEDLKSTSLDTQREATAEL-----RLLAK-HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTA-----LLNLS 613 (828)
Q Consensus 545 V~~Lv~~L~s~~~~~q~~Al~~L-----~~La~-~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~a-----L~nLs 613 (828)
+..|+.+++..+++++..|+..| ..|.. .+...|...+..=..+.|..++.+++..|+..++.. |..+.
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~ 147 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 147 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence 34566677778888887777543 22222 233334444444344566666666677666665543 11112
Q ss_pred cCCc--cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 003339 614 INDN--NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 688 (828)
Q Consensus 614 ~~~~--~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al 688 (828)
.+++ .+..++..-+.+.|..+++..+..++..++..| ..+.|..++++.+..++..++
T Consensus 148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L-----------------~~~~L~~l~~D~d~~VR~aaa 207 (233)
T d1lrva_ 148 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAV 207 (233)
T ss_dssp TCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc-----------------CcHHHHHHHhCCCHHHHHHHH
Confidence 2211 233333333344455555555555555555432 234566666666666666655
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