BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003340
(828 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVG-LGRVVPEGNWYCDGCRPVALGSSS 491
E +C C Q G+D ML+CD CD HT+C+ + + VP W C CR G SS
Sbjct: 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPSS 110
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV-VPEGNWYCDGCRP 484
C C + G+D ++LCD C+ + H +C+ VP+G W C C+P
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 427 LRSFLDPYENVICSECHQG--GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGC 482
++S +D E+ +CS C G + ++L CD+C+ + H C G+ +PEG W C C
Sbjct: 9 MQSLID--EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRHC 63
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 430 FLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV--VPEGNWYCDGC 482
F+D Y IC C +G +D +L CD CD + H +C+ L + +P G W C C
Sbjct: 13 FIDSY---ICQVCSRGDEDDKLLFCDGCDDNYHIFCL-LPPLPEIPRGIWRCPKC 63
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 328 RKGKEKIEEVKSEVAKQV---------CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378
++ KEK++ K EV + C IC SE + TLNC +H FC CI EW
Sbjct: 40 KEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEAV--TLNC-AHSFCSYCINEWM 95
Query: 379 KVESRCPLCKQRFKTIT 395
K + CP+C++ K+ T
Sbjct: 96 KRKIECPICRKDIKSKT 112
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 328 RKGKEKIEEVKSEVAKQV---------CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378
++ KEK++ K EV + C IC SE + TLNC +H FC CI EW
Sbjct: 29 KEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEAV--TLNC-AHSFCSYCINEWM 84
Query: 379 KVESRCPLCKQRFKTIT 395
K + CP+C++ K+ T
Sbjct: 85 KRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 328 RKGKEKIEEVKSEVAKQV---------CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378
++ KEK++ K EV + C IC SE + TLNC +H FC CI EW
Sbjct: 29 KEEKEKMQAQKEEVLSHMNDVLENELQCIIC-SEYFIEAV--TLNC-AHSFCSYCINEWM 84
Query: 379 KVESRCPLCKQRFKTIT 395
K + CP+C++ K+ T
Sbjct: 85 KRKIECPICRKDIKSKT 101
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 435 ENVICSECHQG--GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGC 482
E+ +CS C G + ++L CD+C+ + H C G+ +PEG W C C
Sbjct: 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEGQWLCRHC 72
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
C C D L+CD CD + H YC+ L V E WYC CR
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388
C ICL ED L C H FC+ CI W + CPLCK
Sbjct: 8 CPICL--EDPSNYSMALPCL-HAFCYVCITRWIRQNPTCPLCK 47
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEG-NWYCDGC 482
IC C++ D M+ CD CD H CVG+ PE W+C C
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKC 65
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
C C D L+CD CD + H YC+ L V E WYC CR
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 438 ICSECHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
+C+ CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 190 VCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGC 482
C C QGG+ ++LCD C + H C+ PEG W C C
Sbjct: 14 CEVCQQGGE---IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 435 ENVICSECH-QGGDDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCRP 484
E CS C QG + ML CD CD H C L R +P+G W C CRP
Sbjct: 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR-MPKGMWICQICRP 111
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 435 ENVICSECH-QGGDDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCRP 484
E CS C QG + ML CD CD H C L R +P+G W C CRP
Sbjct: 58 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR-MPKGMWICQICRP 109
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 432 DPYENVICSECHQGGDDGLMLLCDICDSSAHTYC-VGLGRVVPEGNWYCDGCRPVA 486
DP E+ C+ C GGD +L C+ C H C V P G+W C CR +
Sbjct: 4 DPNED-WCAVCQNGGD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV-VPEGNWYCDGCRPVAL 487
C C GG+ +L CD C SS H +C+ +P G W C C AL
Sbjct: 12 CRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 346 CGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388
C +CL+E ED R L C H F C+ W S CPLC+
Sbjct: 8 CAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 442 CHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 23 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 69
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 442 CHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 442 CHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 26 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 442 CHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 442 CHQGG---DDGLMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
CH G D L+CD CD + H YC+ L V E WYC CR
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 416 RDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEG 475
R+ +Y ED S+ IC H DDG M+ CD C H C+G+ R
Sbjct: 11 RENLYFQGSED-GSYGTDVTRCICGFTH---DDGYMICCDKCSVWQHIDCMGIDRQHIPD 66
Query: 476 NWYCDGCRPVAL 487
+ C+ C+P L
Sbjct: 67 TYLCERCQPRNL 78
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPER 399
C HYFC +C +E + RC +C Q I P +
Sbjct: 33 CRHYFCESCALEHFRATPRCYICDQPTGGIFNPAK 67
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 767 EHSRSEVHIVPPPSICSHVERVSSGQTSLMKSHCSSCFDSFIKDVVKRIMD 817
+ +R E+ + H+ +V+ Q+ ++ + CFDS+ ++V KRI D
Sbjct: 587 DQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRIND 637
>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
pdb|2LBM|A Chain A, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
Length = 142
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 66 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP------ 116
Query: 491 SSQAQDPLPDLRTASTNLY 509
+PL DL TA +++
Sbjct: 117 -----EPLLDLVTACNSVF 130
>pdb|2JM1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
Length = 141
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 65 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP------ 115
Query: 491 SSQAQDPLPDLRTASTNLY 509
+PL DL TA +++
Sbjct: 116 -----EPLLDLVTACNSVF 129
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389
C C +E + C+H F C+ W K +RCPLC+Q
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|3QL9|A Chain A, Monoclinic Complex Structure Of Atrx Add Bound To Histone
H3k9me3 Peptide
pdb|3QLA|A Chain A, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|D Chain D, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLC|A Chain A, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|B Chain B, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLN|A Chain A, Crystal Structure Of Atrx Add Domain In Free State
pdb|3QLN|B Chain B, Crystal Structure Of Atrx Add Domain In Free State
Length = 129
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 60 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP------ 110
Query: 491 SSQAQDPLPDLRTASTNLY 509
+PL DL TA ++Y
Sbjct: 111 -----EPLLDLVTACNSVY 124
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCR 483
CS C + G +L+CD C H C+ + +P+G W C C+
Sbjct: 8 CSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391
C IC SE K + L C HYF C+ W + CP+C+ F
Sbjct: 43 CPICCSEYVKGDVATELPC-HHYFHKPCVSIWLQKSGTCPVCRCMF 87
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPE 398
CGIC + + + CSH +C CI ++ +++CP C T+T+P+
Sbjct: 25 CGICF---EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC---CVTVTEPD 71
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 336 EVKSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387
+VK ++C +CL + R G C H F C+++W +V CPLC
Sbjct: 8 KVKELNLHELCAVCLEDFKPRDELGICPC-KHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388
+ +C +C+ + + R+L L C +H F C+ +W K CP+C+
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPC-NHEFHAKCVDKWLKANRTCPICR 67
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 450 LMLLCDICDSSAHTYCVG--LGRVVPEGNWYCDGCR 483
+ LLCD C+ + H YC+ L +V E WYC C+
Sbjct: 40 MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 447 DDGLMLLCDICDSSAHTYCVGLGRV-VPEGNWYCDGCRPVAL 487
D G +L CD C SS H +C+ VP+G W C C AL
Sbjct: 17 DGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCTCPAL 58
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + + + CP C+ K
Sbjct: 27 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + E + CP C+ K
Sbjct: 335 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLC 387
C H FC TCI+ + + CP+C
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + E + CP C+ K
Sbjct: 335 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLC 387
C H FC TCI+ + + CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + E + CP C+ K
Sbjct: 333 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + E + CP C+ K
Sbjct: 333 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLC 387
C H FC TCI+ + + CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLCK 388
C+H FC CI +WS CP+C+
Sbjct: 32 CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYC-VGLGRVVPEGNWYCDGCRPVA 486
C+ C GG+ +L C+ C H C V P G W C CR ++
Sbjct: 7 CAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC +E DK + C H C +C+ W + + + CP C+ K
Sbjct: 339 QLCKIC-AENDKDV---KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV-VPEGNWYCDGC 482
C C +D +L CD CD H YC+ PEG+W C C
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 431 LDPYENVICSECHQGGDDGLMLLCDICDSSA---HTYCVGLGRVVPEGNWYCDGCR 483
+DP E C C+Q G M+ CD + H CVGL P+G WYC CR
Sbjct: 6 IDPNEPTYCL-CNQV-SYGEMIGCDNDECPIEWFHFSCVGLNHK-PKGKWYCPKCR 58
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 346 CGICLSE----EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388
C ICLS ED RRL C H F C+ +W +CP+C+
Sbjct: 17 CTICLSILEEGEDVRRLP-----CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 441 ECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGC 482
EC D G ++ CD C + H C+ R +P G W C C
Sbjct: 10 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 365 CSHYFCFTCIMEWSKVESRCPL 386
C+H F F CI W K CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 334 IEEVKSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES---RCPLCK 388
+ +++ EV +C ICL D + T++C H FC CI + + +CPLCK
Sbjct: 14 VNKLQEEV---ICPICL---DILQKPVTIDC-GHNFCLKCITQIGETSCGFFKCPLCK 64
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 442 CHQGGDDGLMLLCDI--CDSSAHTYCVGLGRVVPEGNW-----YCDGCRPVAL 487
C Q GD G +++CD C + H C+ L + P G W CD C A+
Sbjct: 18 CFQCGDGGELVMCDKKDCPKAYHLLCLNLTQ-PPYGKWECPWHQCDECSSAAV 69
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389
V++Q C ICL + R+ + C H TC E K RCPLC
Sbjct: 3 VSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLCKQRF 391
C H FC+ C+ S + RC LC+Q
Sbjct: 33 CKHVFCYLCVKGASWLGKRCALCRQEI 59
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESR-CPLCKQRFK 392
Q+C IC + ++ C H C +C+ W + E + CP C+ K
Sbjct: 28 QLCKICAENDKDVKIEP----CGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2M1S|A Chain A, Nmr Assignment Of The Arenaviral Protein Z From Lassa
Fever Virus
Length = 99
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 339 SEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKP 397
+ + Q C C E +G + C +HY C C+ V +RCP+CK T +P
Sbjct: 24 THLGPQFCKSCWFEN-----KGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLCKQRF---KTITKP 397
C+H F +CI+ W + CP+C++ T T P
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,096,505
Number of Sequences: 62578
Number of extensions: 669731
Number of successful extensions: 1504
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 90
length of query: 828
length of database: 14,973,337
effective HSP length: 107
effective length of query: 721
effective length of database: 8,277,491
effective search space: 5968071011
effective search space used: 5968071011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)