BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003340
(828 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVD 405
C ICL+ + + GT C+HYFC CI+EWSK + CP+ + FK I R+ G
Sbjct: 108 CPICLNAFRDQAV-GTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICI--RAQFG-- 162
Query: 406 LRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYC 465
++ ++P + EED C C + + +LLCD CD+ H C
Sbjct: 163 -GKILRKIPVENTKASEEEED---------PTFCEVCGRSDREDRLLLCDGCDAGYHMEC 212
Query: 466 VGLG-RVVPEGNWYCDGC 482
+ + VP W+C C
Sbjct: 213 LDPPLQEVPVDEWFCPEC 230
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVD 405
C ICL+ + + GT C+HYFC CI+EWS+ + CP+ + FK I G
Sbjct: 109 CPICLNAFRDQAV-GTPETCAHYFCLDCIIEWSRNANSCPVDRTVFKCICI-RAQFNGKI 166
Query: 406 LRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYC 465
L+ + + E + + EED C C + + +LLCD CD+ H C
Sbjct: 167 LKKIPV---ENTKACEAEEED---------PTFCEVCGRSDREDRLLLCDGCDAGYHMEC 214
Query: 466 VGLG-RVVPEGNWYCDGC 482
+ + VP W+C C
Sbjct: 215 LDPPLQEVPVDEWFCPEC 232
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVD 405
C ICL+ + + GT C+HYFC CI+EWS+ + CP+ + FK I G
Sbjct: 109 CPICLNAFRDQAV-GTPETCAHYFCLDCIIEWSRNANSCPVDRTIFKCICI-RAQFNGKI 166
Query: 406 LRSVVIQVPERDQVYQPSEEDLRS----FLDPYENVICSECHQGGDDGLMLLCDICDSSA 461
L+ + + E+ R+ + + C C + + +LLCD CD+
Sbjct: 167 LKKIPV-------------ENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGY 213
Query: 462 HTYCVGLG-RVVPEGNWYCDGC 482
H C+ + VP W+C C
Sbjct: 214 HMECLDPPLQEVPVDEWFCPEC 235
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVD 405
C ICLS + R + + C H FCF C+ EWSK++ CPLCKQ F+TI R+ D
Sbjct: 102 CAICLS---RCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNVRTLDDYD 158
Query: 406 LRSVVIQVP 414
V P
Sbjct: 159 RYPVQTTSP 167
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens
GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484
N C C + GD M+LCD CD HTYCV + VPEG+W+C CRP
Sbjct: 1148 NARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPEGDWFCPECRP 1197
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.07c PE=4 SV=1
Length = 571
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 365 CSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQVYQPSE 424
C HYF C+ W +V + CPLC+ F VD+ V R +
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEF----------LKVDVLEFVKGPWYRAYPVEEKT 105
Query: 425 EDLRSFLDPYEN-----VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYC 479
+ + + +P+E+ C C + ++LLCD CD + HTYC+ + VP +YC
Sbjct: 106 QSVANAGEPFEDEGSETCRCVICGRSDHAEVLLLCDGCDDAYHTYCLNMD-AVPIEEFYC 164
Query: 480 DGC 482
C
Sbjct: 165 PNC 167
>sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus
GN=Baz1a PE=1 SV=3
Length = 1555
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484
N C C + GD M+LCD CD HTYCV + VP+G+W+C CRP
Sbjct: 1149 NARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKAVPDGDWFCPECRP 1198
>sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis
thaliana GN=MBD9 PE=2 SV=1
Length = 2176
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 433 PYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV-VPEGNWYCDGC 482
P++ +C C DD +LLCD CD+ HTYC+ + +P+GNWYC C
Sbjct: 1284 PWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSC 1334
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 432 DPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCR 483
+P + C C + L+++CD C+ H CV G P +W C CR
Sbjct: 79 EPDRDASCGACGRPESIELVVVCDACERGFHMSCVNDGVEAAPSADWMCSDCR 131
>sp|Q61T02|KDM5_CAEBR Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae
GN=rbr-2 PE=3 SV=2
Length = 1482
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 435 ENVICSECHQGGDDGLMLLCDI--CDSSAHTYCVG-LGRVVPEGNWYCDGC 482
E V C C++G D+ L+LLCDI C+S HTYC + VPEG W C C
Sbjct: 321 EQVYCVSCNEGKDEDLLLLCDIEGCNSGRHTYCCDPVLDEVPEGEWRCPKC 371
>sp|Q06834|ASR1_YEAST Alcohol-sensitive RING finger protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ASR1 PE=4 SV=2
Length = 288
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 44/219 (20%)
Query: 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK--VESRCPLCKQRFKTITKPERSTA- 402
C ICL+++ + G LN C H F CI EW K + +CP+C+ + E A
Sbjct: 4 CPICLADDQEGEQFGCLNVCGHKFHLNCIREWHKYSINLKCPICRVESTHLEVGEGQHAL 63
Query: 403 ------GVDLRSVVIQV-------------PERDQVYQPSEEDLRSFL--DPYENVICSE 441
G +++ + V E+DQ + E LR L D + + CS
Sbjct: 64 SINLKMGFMIKNAIDYVGAETTNERNEDDTGEQDQEIEFLSERLRGTLVMDTIKIIQCSI 123
Query: 442 CHQGGDDGLMLLCDICDSSAHTYCV-GLGRVVPEGNWY--CDGCRPVAL-----GSSSSQ 493
C L L C C++ H C+ GL V + N + C CR AL G+ SSQ
Sbjct: 124 CGDTDVSRLSLYCQDCEAIYHETCLRGLACEVGDRNTWQECTDCRSNALLELRMGAISSQ 183
Query: 494 AQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRI 532
Y+ + ++ GE D +SV + ++
Sbjct: 184 LAS------------YDSRNSMIFAGELRDKHSVKTQQM 210
>sp|Q23541|KDM5_CAEEL Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans
GN=rbr-2 PE=1 SV=2
Length = 1477
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 437 VICSECHQGGDDGLMLLCDI--CDSSAHTYCVG-LGRVVPEGNWYCDGC 482
V C C++G D+ L+LLCDI C++ HTYC + VPEG W C C
Sbjct: 320 VFCVACNEGKDEDLLLLCDIDGCNNGRHTYCCDPVLDEVPEGEWRCPKC 368
>sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1
Length = 2492
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 22/80 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 220 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP------ 270
Query: 491 SSQAQDPLPDLRTASTNLYN 510
+PL DL TA ++++
Sbjct: 271 -----EPLLDLVTACNSVFD 285
>sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5
Length = 2492
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 220 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP------ 270
Query: 491 SSQAQDPLPDLRTASTNLY 509
+PL DL TA +++
Sbjct: 271 -----EPLLDLVTACNSVF 284
>sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1
Length = 2492
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 439 CSECHQGGDDGLMLLCDICDSSAHTYCV--GLGR-----VVPEGN-WYCDGCRPVALGSS 490
C C +GG+ ++ CD C ++ C+ LGR ++ E N WYC C P
Sbjct: 220 CRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP------ 270
Query: 491 SSQAQDPLPDLRTASTNLY 509
+PL DL TA +++
Sbjct: 271 -----EPLLDLVTACNSVF 284
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 33.9 bits (76), Expect = 5.3, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 69 EEEEEVDVRKVVRSKVRKREEVFDSFEGEDEDEEEEVDVRKVVRSKARKSNLGDGKNGVK 128
E+E+ +++ V K E D E E+E+ + KA + N D K K
Sbjct: 4106 EDEKAIEINTEDEKAVEKNTE--DEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEK 4163
Query: 129 TARKRKRVRYGEDEDEDYEEEEEDEDE-EFTPDDDDCLDEEEELVVTKKKNSSNRK--RK 185
K + ++++ E+ EDE E +D+ ++E E +KN+ + K K
Sbjct: 4164 NTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEK 4223
Query: 186 NNNSRRKCLRKKSSVRG--QKRRKSKVSKKPLEK 217
N + K +G QK + V + +EK
Sbjct: 4224 NTEDEKVVEEKIEDEKGEEQKAEEENVGIEEVEK 4257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,513,993
Number of Sequences: 539616
Number of extensions: 15739616
Number of successful extensions: 168950
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 3147
Number of HSP's that attempted gapping in prelim test: 88600
Number of HSP's gapped (non-prelim): 33959
length of query: 828
length of database: 191,569,459
effective HSP length: 126
effective length of query: 702
effective length of database: 123,577,843
effective search space: 86751645786
effective search space used: 86751645786
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)