Query 003340
Match_columns 828
No_of_seqs 619 out of 2614
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.3 8.3E-13 2.8E-17 122.4 3.8 100 341-490 5-109 (111)
2 2kwj_A Zinc finger protein DPF 99.2 3E-12 1E-16 119.5 3.6 92 344-484 2-107 (114)
3 3v43_A Histone acetyltransfera 99.2 2E-11 6.7E-16 113.6 8.3 94 342-484 4-111 (112)
4 4ap4_A E3 ubiquitin ligase RNF 99.0 3.3E-11 1.1E-15 112.8 0.6 110 342-485 6-122 (133)
5 1f62_A Transcription factor WS 99.0 9.4E-11 3.2E-15 93.9 2.5 47 438-484 2-49 (51)
6 2e6r_A Jumonji/ARID domain-con 99.0 1.2E-10 4.2E-15 104.7 2.8 51 434-484 14-65 (92)
7 1mm2_A MI2-beta; PHD, zinc fin 99.0 4.1E-10 1.4E-14 93.8 5.7 50 435-487 8-58 (61)
8 1fp0_A KAP-1 corepressor; PHD 99.0 5.4E-10 1.9E-14 99.4 6.5 48 435-485 24-72 (88)
9 2ecm_A Ring finger and CHY zin 99.0 3.1E-10 1.1E-14 90.9 4.3 51 342-392 4-54 (55)
10 1iym_A EL5; ring-H2 finger, ub 99.0 3.5E-10 1.2E-14 90.7 4.2 51 342-392 4-54 (55)
11 2yur_A Retinoblastoma-binding 98.9 6.5E-10 2.2E-14 95.1 4.7 48 342-393 14-64 (74)
12 2lri_C Autoimmune regulator; Z 98.9 4.3E-10 1.5E-14 95.1 3.5 48 435-485 11-59 (66)
13 2ysm_A Myeloid/lymphoid or mix 98.9 9E-10 3.1E-14 102.0 5.8 95 435-540 6-102 (111)
14 2ep4_A Ring finger protein 24; 98.9 7.1E-10 2.4E-14 94.4 4.5 53 342-395 14-66 (74)
15 2kiz_A E3 ubiquitin-protein li 98.9 6.5E-10 2.2E-14 93.4 4.2 52 342-394 13-64 (69)
16 2djb_A Polycomb group ring fin 98.9 9.3E-10 3.2E-14 93.5 4.8 49 342-394 14-63 (72)
17 2d8t_A Dactylidin, ring finger 98.9 5.1E-10 1.7E-14 94.9 3.0 48 342-393 14-61 (71)
18 4ayc_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 107.2 3.3 48 343-394 53-100 (138)
19 2ea6_A Ring finger protein 4; 98.9 5.7E-10 2E-14 93.1 3.2 51 342-392 14-67 (69)
20 3ng2_A RNF4, snurf, ring finge 98.9 6.5E-10 2.2E-14 93.5 2.9 52 342-393 9-63 (71)
21 1xwh_A Autoimmune regulator; P 98.9 5.4E-10 1.9E-14 94.4 2.3 48 435-485 7-55 (66)
22 2l5u_A Chromodomain-helicase-D 98.9 5.1E-10 1.8E-14 93.1 2.1 48 435-485 10-58 (61)
23 2e6s_A E3 ubiquitin-protein li 98.9 1E-09 3.5E-14 95.5 4.0 47 438-484 28-76 (77)
24 2csy_A Zinc finger protein 183 98.9 1E-09 3.5E-14 95.2 3.9 47 342-392 14-60 (81)
25 3asl_A E3 ubiquitin-protein li 98.9 1E-09 3.5E-14 93.8 3.7 47 438-484 20-68 (70)
26 2ect_A Ring finger protein 126 98.9 1.5E-09 5.2E-14 93.3 4.8 52 342-394 14-65 (78)
27 1x4j_A Ring finger protein 38; 98.8 8.2E-10 2.8E-14 94.5 2.6 51 342-393 22-72 (75)
28 1chc_A Equine herpes virus-1 r 98.8 2E-09 6.8E-14 90.0 4.9 51 342-395 4-54 (68)
29 2ku3_A Bromodomain-containing 98.8 5E-10 1.7E-14 96.0 0.8 49 435-484 15-65 (71)
30 1v87_A Deltex protein 2; ring- 98.8 1.5E-09 5.3E-14 99.9 4.1 53 342-394 24-95 (114)
31 2ct2_A Tripartite motif protei 98.8 1.8E-09 6E-14 94.5 4.2 52 342-393 14-68 (88)
32 2ecl_A Ring-box protein 2; RNF 98.8 1.6E-09 5.5E-14 94.6 3.9 52 342-393 14-76 (81)
33 2xeu_A Ring finger protein 4; 98.8 1.2E-09 4E-14 89.9 2.8 52 342-393 2-56 (64)
34 2yql_A PHD finger protein 21A; 98.8 1E-09 3.5E-14 89.7 2.4 47 435-484 8-55 (56)
35 2ysl_A Tripartite motif-contai 98.8 1.9E-09 6.6E-14 91.2 3.9 48 342-393 19-69 (73)
36 2l0b_A E3 ubiquitin-protein li 98.8 1.4E-09 4.8E-14 96.9 3.1 51 342-393 39-89 (91)
37 3lrq_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 98.2 3.5 47 343-393 22-70 (100)
38 3shb_A E3 ubiquitin-protein li 98.8 1.8E-09 6E-14 94.0 3.6 47 438-484 28-76 (77)
39 1t1h_A Gspef-atpub14, armadill 98.8 1.7E-09 5.8E-14 93.0 3.4 48 342-393 7-55 (78)
40 2ecy_A TNF receptor-associated 98.8 2E-09 6.8E-14 89.8 3.7 48 342-393 14-62 (66)
41 2puy_A PHD finger protein 21A; 98.8 1E-09 3.5E-14 90.9 1.9 47 435-484 4-51 (60)
42 1g25_A CDK-activating kinase a 98.8 2.6E-09 8.8E-14 88.8 3.8 52 342-393 2-55 (65)
43 2ecn_A Ring finger protein 141 98.8 1.6E-09 5.4E-14 91.3 2.2 48 342-394 14-61 (70)
44 1wev_A Riken cDNA 1110020M19; 98.8 1.6E-09 5.3E-14 96.7 2.0 49 436-484 16-71 (88)
45 2l43_A N-teminal domain from h 98.8 8.2E-10 2.8E-14 98.5 0.1 50 435-485 24-75 (88)
46 2egp_A Tripartite motif-contai 98.8 2.6E-09 8.8E-14 91.7 3.0 48 342-393 11-65 (79)
47 2yt5_A Metal-response element- 98.8 1.2E-09 4E-14 92.0 0.8 51 435-485 5-61 (66)
48 3ztg_A E3 ubiquitin-protein li 98.8 3.5E-09 1.2E-13 93.8 3.9 47 342-392 12-61 (92)
49 2ecw_A Tripartite motif-contai 98.8 4.2E-09 1.4E-13 91.1 4.2 48 342-393 18-71 (85)
50 3fl2_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 99.4 3.6 47 343-393 52-99 (124)
51 3dpl_R Ring-box protein 1; ubi 98.7 4.6E-09 1.6E-13 96.8 4.3 53 341-393 35-101 (106)
52 2ecv_A Tripartite motif-contai 98.7 7.3E-09 2.5E-13 89.6 5.3 48 342-393 18-71 (85)
53 3v43_A Histone acetyltransfera 98.7 4.4E-09 1.5E-13 97.7 4.1 95 436-540 5-110 (112)
54 2ysj_A Tripartite motif-contai 98.7 5.8E-09 2E-13 86.1 4.2 42 342-387 19-63 (63)
55 2ckl_A Polycomb group ring fin 98.7 4.6E-09 1.6E-13 96.1 3.9 48 342-393 14-62 (108)
56 2y43_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 94.3 3.6 47 343-393 22-69 (99)
57 2kr4_A Ubiquitin conjugation f 98.7 8.1E-09 2.8E-13 91.1 3.8 48 342-393 13-60 (85)
58 2ecj_A Tripartite motif-contai 98.7 1E-08 3.5E-13 82.7 3.5 42 342-387 14-58 (58)
59 3u5n_A E3 ubiquitin-protein li 98.6 9.3E-09 3.2E-13 105.2 3.7 47 435-484 6-53 (207)
60 2k16_A Transcription initiatio 98.6 6.8E-09 2.3E-13 89.6 2.2 50 435-484 17-67 (75)
61 3ask_A E3 ubiquitin-protein li 98.6 7.4E-09 2.5E-13 106.8 2.8 48 437-484 175-224 (226)
62 3o36_A Transcription intermedi 98.6 1.1E-08 3.9E-13 102.6 4.0 46 436-484 4-50 (184)
63 1jm7_A BRCA1, breast cancer ty 98.6 1.1E-08 3.9E-13 93.4 3.6 47 343-393 21-70 (112)
64 2kwj_A Zinc finger protein DPF 98.6 9.2E-09 3.2E-13 95.9 2.9 93 437-540 2-106 (114)
65 1z6u_A NP95-like ring finger p 98.6 1.1E-08 3.9E-13 99.5 3.6 48 343-394 78-126 (150)
66 2kre_A Ubiquitin conjugation f 98.6 1.1E-08 3.9E-13 93.1 3.2 48 342-393 28-75 (100)
67 3l11_A E3 ubiquitin-protein li 98.6 6.4E-09 2.2E-13 96.1 1.4 47 343-393 15-62 (115)
68 4gne_A Histone-lysine N-methyl 98.6 1.7E-08 5.8E-13 93.1 4.1 83 435-536 14-98 (107)
69 2ckl_B Ubiquitin ligase protei 98.6 1.5E-08 5E-13 99.6 3.2 47 343-393 54-102 (165)
70 1wgm_A Ubiquitin conjugation f 98.6 2E-08 6.8E-13 91.1 3.7 48 342-393 21-69 (98)
71 4a0k_B E3 ubiquitin-protein li 98.6 6.6E-09 2.2E-13 97.4 0.4 54 340-393 45-112 (117)
72 1bor_A Transcription factor PM 98.6 1.4E-08 4.9E-13 82.4 2.3 46 341-393 4-49 (56)
73 2d8s_A Cellular modulator of i 98.6 3.2E-08 1.1E-12 86.6 4.7 52 342-395 14-72 (80)
74 3hct_A TNF receptor-associated 98.6 1.9E-08 6.5E-13 93.6 2.9 48 342-393 17-65 (118)
75 2ro1_A Transcription intermedi 98.6 2.8E-08 9.5E-13 100.5 4.3 46 437-485 3-49 (189)
76 1rmd_A RAG1; V(D)J recombinati 98.5 2.9E-08 9.8E-13 91.8 3.5 48 343-394 23-71 (116)
77 1e4u_A Transcriptional repress 98.5 5.9E-08 2E-12 84.5 5.2 51 342-394 10-63 (78)
78 1jm7_B BARD1, BRCA1-associated 98.5 2.4E-08 8.2E-13 92.8 2.8 45 342-392 21-66 (117)
79 4ic3_A E3 ubiquitin-protein li 98.5 4.4E-08 1.5E-12 84.0 3.2 44 343-394 24-68 (74)
80 2c2l_A CHIP, carboxy terminus 98.5 6.8E-08 2.3E-12 101.2 3.9 48 342-393 207-255 (281)
81 2lv9_A Histone-lysine N-methyl 98.4 1.3E-07 4.5E-12 85.8 4.5 49 435-485 27-76 (98)
82 3knv_A TNF receptor-associated 98.4 5.5E-08 1.9E-12 93.8 1.7 47 342-392 30-77 (141)
83 4ap4_A E3 ubiquitin ligase RNF 98.4 8.3E-08 2.9E-12 89.6 2.9 52 342-393 71-125 (133)
84 2vje_A E3 ubiquitin-protein li 98.4 1E-07 3.6E-12 79.6 2.5 49 342-394 7-58 (64)
85 2yu4_A E3 SUMO-protein ligase 98.4 1.5E-07 5.1E-12 84.4 3.5 45 342-390 6-59 (94)
86 1wen_A Inhibitor of growth fam 98.4 2.6E-07 9E-12 79.1 4.5 50 433-485 13-65 (71)
87 2y1n_A E3 ubiquitin-protein li 98.3 1.7E-07 5.9E-12 103.9 4.0 48 343-394 332-380 (389)
88 2vje_B MDM4 protein; proto-onc 98.3 1.4E-07 4.9E-12 78.5 2.4 48 343-394 7-57 (63)
89 2ct0_A Non-SMC element 1 homol 98.3 3.9E-07 1.3E-11 78.7 4.6 49 343-394 15-65 (74)
90 1weu_A Inhibitor of growth fam 98.3 4.5E-07 1.5E-11 81.2 5.0 51 432-485 32-85 (91)
91 2f42_A STIP1 homology and U-bo 98.3 2.6E-07 8.7E-12 92.6 3.6 48 342-393 105-153 (179)
92 3hcs_A TNF receptor-associated 98.2 3.3E-07 1.1E-11 90.3 2.9 48 342-393 17-65 (170)
93 2vnf_A ING 4, P29ING4, inhibit 98.2 1.6E-07 5.4E-12 77.9 0.5 48 434-484 8-58 (60)
94 2ecg_A Baculoviral IAP repeat- 98.2 5.3E-07 1.8E-11 77.3 3.6 44 343-394 25-69 (75)
95 2jmi_A Protein YNG1, ING1 homo 98.2 4.7E-07 1.6E-11 81.0 2.6 48 434-484 24-75 (90)
96 3c6w_A P28ING5, inhibitor of g 98.2 2.7E-07 9.2E-12 76.3 0.5 49 433-484 6-57 (59)
97 2ea5_A Cell growth regulator w 98.2 1.3E-06 4.3E-11 74.0 4.5 46 342-395 14-60 (68)
98 2g6q_A Inhibitor of growth pro 98.1 3.5E-07 1.2E-11 76.4 0.5 49 433-484 8-59 (62)
99 2yho_A E3 ubiquitin-protein li 98.1 9.9E-07 3.4E-11 76.8 3.2 45 343-395 18-63 (79)
100 3htk_C E3 SUMO-protein ligase 98.0 1.5E-06 5.3E-11 91.4 2.4 49 341-393 179-232 (267)
101 3t6p_A Baculoviral IAP repeat- 97.9 2.5E-06 8.5E-11 93.7 2.7 46 342-395 294-340 (345)
102 2bay_A PRE-mRNA splicing facto 97.9 4E-06 1.4E-10 69.5 2.5 46 344-393 4-50 (61)
103 1x4i_A Inhibitor of growth pro 97.8 2.7E-06 9.2E-11 72.7 0.6 47 435-484 5-54 (70)
104 2lbm_A Transcriptional regulat 97.8 3.9E-06 1.3E-10 81.0 1.5 48 436-486 63-118 (142)
105 3o70_A PHD finger protein 13; 97.8 5.6E-06 1.9E-10 70.2 2.2 51 432-484 15-66 (68)
106 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1.1E-05 3.7E-10 66.8 3.4 48 342-393 5-59 (60)
107 1wim_A KIAA0161 protein; ring 97.8 6.1E-06 2.1E-10 73.5 1.6 48 342-390 4-61 (94)
108 3k1l_B Fancl; UBC, ring, RWD, 97.8 7.4E-06 2.5E-10 89.0 2.4 53 341-393 306-373 (381)
109 3vk6_A E3 ubiquitin-protein li 97.5 3.6E-05 1.2E-09 69.6 3.1 48 345-395 3-51 (101)
110 3o7a_A PHD finger protein 13 v 97.5 1.9E-05 6.5E-10 63.4 1.0 47 436-484 4-51 (52)
111 1wee_A PHD finger family prote 97.5 2.6E-05 8.9E-10 66.7 1.8 49 435-484 15-65 (72)
112 1we9_A PHD finger family prote 97.5 2.1E-05 7.3E-10 65.5 1.2 51 435-485 5-58 (64)
113 2rsd_A E3 SUMO-protein ligase 97.5 2.5E-05 8.6E-10 66.1 1.2 49 435-484 9-64 (68)
114 1wew_A DNA-binding family prot 97.5 2E-05 7E-10 68.4 0.6 53 432-485 12-72 (78)
115 1wep_A PHF8; structural genomi 97.4 4.3E-05 1.5E-09 66.5 1.4 50 435-485 11-63 (79)
116 2kgg_A Histone demethylase jar 97.3 4.2E-05 1.4E-09 61.4 0.3 47 437-483 3-52 (52)
117 1wem_A Death associated transc 97.3 1.5E-05 5.3E-10 68.7 -2.5 48 436-484 16-69 (76)
118 2vpb_A Hpygo1, pygopus homolog 97.2 2E-05 6.9E-10 66.3 -2.2 48 436-483 8-64 (65)
119 3ql9_A Transcriptional regulat 97.2 5.7E-05 1.9E-09 71.7 0.5 49 435-486 56-112 (129)
120 2ri7_A Nucleosome-remodeling f 97.2 2.7E-05 9.3E-10 77.1 -1.9 49 435-484 7-58 (174)
121 2xb1_A Pygopus homolog 2, B-ce 97.1 5.8E-05 2E-09 69.3 -0.3 49 437-485 4-61 (105)
122 4gne_A Histone-lysine N-methyl 97.1 0.00026 8.9E-09 65.2 3.3 38 438-479 60-98 (107)
123 3kqi_A GRC5, PHD finger protei 96.9 9.4E-05 3.2E-09 63.7 -1.2 48 436-484 10-60 (75)
124 3nw0_A Non-structural maintena 96.5 0.0018 6.1E-08 67.6 4.4 49 343-394 180-230 (238)
125 3pur_A Lysine-specific demethy 96.2 0.0014 4.9E-08 74.9 1.9 37 448-484 55-93 (528)
126 3lqh_A Histone-lysine N-methyl 96.1 0.0011 3.6E-08 66.7 0.2 48 438-485 4-63 (183)
127 3kv5_D JMJC domain-containing 95.6 0.0011 3.8E-08 75.9 -2.4 49 435-484 36-87 (488)
128 1wil_A KIAA1045 protein; ring 95.5 0.0047 1.6E-07 54.0 2.0 50 435-485 14-76 (89)
129 3kv4_A PHD finger protein 8; e 95.1 0.0015 5E-08 74.0 -3.3 47 437-484 6-55 (447)
130 3asl_A E3 ubiquitin-protein li 95.1 0.029 9.9E-07 47.6 5.5 63 461-540 4-67 (70)
131 2e6s_A E3 ubiquitin-protein li 94.6 0.046 1.6E-06 47.3 5.7 55 475-540 20-75 (77)
132 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.032 1.1E-06 49.8 4.2 33 342-376 2-35 (101)
133 3shb_A E3 ubiquitin-protein li 94.2 0.046 1.6E-06 47.3 4.8 56 474-540 19-75 (77)
134 4bbq_A Lysine-specific demethy 94.2 0.019 6.4E-07 53.0 2.4 39 447-485 71-114 (117)
135 2ko5_A Ring finger protein Z; 93.2 0.032 1.1E-06 49.8 1.9 49 341-394 26-74 (99)
136 3ask_A E3 ubiquitin-protein li 93.0 0.07 2.4E-06 55.1 4.3 57 473-540 166-223 (226)
137 2lri_C Autoimmune regulator; Z 92.7 0.059 2E-06 45.2 2.7 46 341-390 10-59 (66)
138 1fp0_A KAP-1 corepressor; PHD 91.1 0.37 1.3E-05 42.7 6.2 51 474-543 23-73 (88)
139 1mm2_A MI2-beta; PHD, zinc fin 90.5 0.46 1.6E-05 39.0 5.8 48 475-541 8-55 (61)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 90.3 0.15 5.2E-06 47.1 3.2 35 451-485 2-44 (140)
141 3o36_A Transcription intermedi 89.9 0.67 2.3E-05 45.9 7.7 51 475-544 3-53 (184)
142 1xwh_A Autoimmune regulator; P 89.6 0.18 6.3E-06 42.0 2.8 50 473-541 5-54 (66)
143 1we9_A PHD finger family prote 87.1 0.14 4.9E-06 42.1 0.5 49 341-389 4-57 (64)
144 1wil_A KIAA1045 protein; ring 86.7 0.8 2.7E-05 40.2 5.0 35 341-377 13-47 (89)
145 2yql_A PHD finger protein 21A; 86.6 0.32 1.1E-05 39.2 2.3 47 474-539 7-53 (56)
146 3u5n_A E3 ubiquitin-protein li 86.0 0.53 1.8E-05 47.6 4.1 50 475-543 6-55 (207)
147 2l5u_A Chromodomain-helicase-D 85.3 0.46 1.6E-05 39.0 2.6 48 474-540 9-56 (61)
148 1weq_A PHD finger protein 7; s 85.1 1.5 5E-05 38.7 5.9 35 449-485 44-79 (85)
149 2puy_A PHD finger protein 21A; 84.7 0.39 1.3E-05 39.1 2.0 47 475-540 4-50 (60)
150 1weo_A Cellulose synthase, cat 84.6 0.97 3.3E-05 40.0 4.5 53 342-394 15-71 (93)
151 2ro1_A Transcription intermedi 83.8 1.2 4.2E-05 44.5 5.6 38 506-544 14-51 (189)
152 2lbm_A Transcriptional regulat 82.9 0.74 2.5E-05 44.3 3.4 46 340-389 60-116 (142)
153 2e6r_A Jumonji/ARID domain-con 82.9 0.76 2.6E-05 40.8 3.2 36 505-541 30-65 (92)
154 2k16_A Transcription initiatio 82.3 0.32 1.1E-05 41.3 0.5 50 342-392 17-70 (75)
155 2cs3_A Protein C14ORF4, MY039 82.0 0.91 3.1E-05 39.4 3.2 38 342-379 14-51 (93)
156 2vpb_A Hpygo1, pygopus homolog 80.3 0.34 1.2E-05 40.5 -0.0 47 342-388 7-64 (65)
157 2xb1_A Pygopus homolog 2, B-ce 79.6 0.43 1.5E-05 43.5 0.4 49 343-391 3-62 (105)
158 3ql9_A Transcriptional regulat 79.1 1.1 3.9E-05 42.3 3.2 46 340-389 54-110 (129)
159 3a1b_A DNA (cytosine-5)-methyl 78.7 0.45 1.5E-05 46.5 0.3 48 436-486 79-135 (159)
160 3rsn_A SET1/ASH2 histone methy 78.0 1 3.4E-05 44.8 2.5 48 438-486 7-60 (177)
161 3lqh_A Histone-lysine N-methyl 77.5 0.87 3E-05 45.5 2.0 50 343-392 2-65 (183)
162 2yt5_A Metal-response element- 76.7 0.6 2E-05 38.5 0.5 50 341-390 4-61 (66)
163 4bbq_A Lysine-specific demethy 75.8 1.6 5.3E-05 40.0 3.1 79 436-528 7-96 (117)
164 2l43_A N-teminal domain from h 75.3 0.8 2.7E-05 40.4 0.9 49 342-390 24-75 (88)
165 2kgg_A Histone demethylase jar 74.6 1.6 5.5E-05 34.5 2.4 44 345-388 4-52 (52)
166 1wep_A PHF8; structural genomi 73.9 2.4 8.2E-05 36.3 3.6 49 342-391 11-64 (79)
167 2pv0_B DNA (cytosine-5)-methyl 73.6 0.9 3.1E-05 50.3 1.0 48 436-486 93-149 (386)
168 2ku3_A Bromodomain-containing 72.9 0.88 3E-05 38.6 0.5 49 341-389 14-65 (71)
169 1f62_A Transcription factor WS 71.7 1.6 5.6E-05 34.0 1.8 34 506-540 15-48 (51)
170 1weu_A Inhibitor of growth fam 68.8 1.9 6.6E-05 38.3 1.8 46 342-390 35-85 (91)
171 2lv9_A Histone-lysine N-methyl 68.5 1.7 5.9E-05 38.9 1.5 45 343-389 28-75 (98)
172 2ri7_A Nucleosome-remodeling f 68.1 1.1 3.9E-05 43.7 0.2 48 342-390 7-59 (174)
173 3dxt_A JMJC domain-containing 63.5 0.85 2.9E-05 50.0 -1.9 38 534-590 121-160 (354)
174 1wee_A PHD finger family prote 60.8 1.2 4.3E-05 37.4 -0.9 48 342-390 15-66 (72)
175 1wen_A Inhibitor of growth fam 60.3 2.8 9.7E-05 35.4 1.2 46 342-390 15-65 (71)
176 1wem_A Death associated transc 58.3 2.2 7.4E-05 36.2 0.1 47 342-390 15-70 (76)
177 3o70_A PHD finger protein 13; 55.9 2.5 8.5E-05 35.5 0.1 46 342-389 18-66 (68)
178 1wev_A Riken cDNA 1110020M19; 54.8 2.5 8.6E-05 37.1 -0.1 35 506-541 33-71 (88)
179 2pv0_B DNA (cytosine-5)-methyl 54.1 7.6 0.00026 43.0 3.6 46 340-389 90-147 (386)
180 4b2u_A S67; toxin, ICK; NMR {S 53.7 2.1 7.1E-05 30.5 -0.6 24 463-486 2-28 (36)
181 1weo_A Cellulose synthase, cat 53.7 2.8 9.7E-05 37.1 0.1 49 435-485 15-67 (93)
182 3a1b_A DNA (cytosine-5)-methyl 53.7 7.5 0.00026 38.0 3.1 46 340-389 76-133 (159)
183 2jmo_A Parkin; IBR, E3 ligase, 51.6 3.6 0.00012 35.4 0.4 41 343-385 25-74 (80)
184 1wew_A DNA-binding family prot 51.1 3.5 0.00012 35.2 0.3 47 342-390 15-72 (78)
185 1v87_A Deltex protein 2; ring- 49.0 6.3 0.00022 35.2 1.7 33 454-486 58-92 (114)
186 1wd2_A Ariadne-1 protein homol 48.9 5.8 0.0002 32.4 1.2 38 343-380 6-47 (60)
187 1y02_A CARP2, FYVE-ring finger 48.1 3.2 0.00011 38.8 -0.5 47 342-388 18-64 (120)
188 2ect_A Ring finger protein 126 46.4 12 0.00041 31.0 2.9 49 436-487 15-63 (78)
189 2jmi_A Protein YNG1, ING1 homo 46.1 4.4 0.00015 36.0 0.1 45 342-389 25-75 (90)
190 1iym_A EL5; ring-H2 finger, ub 45.9 10 0.00035 29.1 2.2 46 437-485 6-52 (55)
191 3c6w_A P28ING5, inhibitor of g 44.9 3.1 0.00011 33.8 -1.0 45 342-389 8-57 (59)
192 3m62_A Ubiquitin conjugation f 43.9 15 0.0005 45.2 4.2 49 341-393 889-938 (968)
193 1x4j_A Ring finger protein 38; 43.6 6.3 0.00022 32.6 0.7 48 435-485 22-69 (75)
194 2g6q_A Inhibitor of growth pro 43.3 3.4 0.00012 34.0 -1.0 45 342-389 10-59 (62)
195 1z60_A TFIIH basal transcripti 43.3 12 0.0004 30.8 2.2 43 344-387 16-58 (59)
196 1joc_A EEA1, early endosomal a 43.1 12 0.0004 35.0 2.5 33 343-375 69-101 (125)
197 1vfy_A Phosphatidylinositol-3- 40.6 16 0.00056 30.6 2.8 32 344-375 12-43 (73)
198 3t7l_A Zinc finger FYVE domain 40.1 15 0.0005 32.3 2.5 35 343-377 20-54 (90)
199 3l11_A E3 ubiquitin-protein li 40.1 12 0.00043 33.4 2.1 46 436-486 15-60 (115)
200 2yw8_A RUN and FYVE domain-con 40.0 15 0.00053 31.5 2.6 34 342-375 18-51 (82)
201 2ysl_A Tripartite motif-contai 40.0 7.6 0.00026 31.6 0.6 47 436-485 20-66 (73)
202 3ihp_A Ubiquitin carboxyl-term 38.6 18 0.00062 44.0 3.8 27 362-390 173-199 (854)
203 1z2q_A LM5-1; membrane protein 38.5 17 0.00058 31.4 2.6 34 342-375 20-53 (84)
204 2ct7_A Ring finger protein 31; 38.5 6.6 0.00023 34.1 0.0 33 345-377 27-61 (86)
205 1x4u_A Zinc finger, FYVE domai 36.7 18 0.00061 31.2 2.5 33 342-374 13-45 (84)
206 1vyx_A ORF K3, K3RING; zinc-bi 36.1 4 0.00014 33.2 -1.7 49 436-485 6-56 (60)
207 1bor_A Transcription factor PM 35.2 40 0.0014 26.2 4.2 42 435-485 5-46 (56)
208 3opt_A DNA damage-responsive t 35.1 7.4 0.00025 42.9 -0.3 37 534-589 168-206 (373)
209 3zyq_A Hepatocyte growth facto 35.0 17 0.00059 37.0 2.5 33 343-375 164-196 (226)
210 3kv5_D JMJC domain-containing 34.8 8.1 0.00028 44.1 -0.0 49 342-391 36-89 (488)
211 3i2d_A E3 SUMO-protein ligase 33.8 24 0.00081 38.9 3.4 48 343-393 249-300 (371)
212 2fiy_A Protein FDHE homolog; F 33.6 5.5 0.00019 42.9 -1.6 45 342-390 181-231 (309)
213 3k1l_B Fancl; UBC, ring, RWD, 33.6 17 0.00059 39.8 2.2 50 436-485 308-370 (381)
214 1dvp_A HRS, hepatocyte growth 33.5 18 0.00062 36.6 2.3 33 343-375 161-193 (220)
215 2ecm_A Ring finger and CHY zin 33.1 11 0.00038 28.8 0.5 48 436-486 5-53 (55)
216 1wfk_A Zinc finger, FYVE domai 32.5 19 0.00066 31.4 2.0 35 342-376 8-42 (88)
217 3kqi_A GRC5, PHD finger protei 31.5 11 0.00036 31.9 0.2 48 342-390 9-61 (75)
218 1e4u_A Transcriptional repress 31.1 15 0.00052 31.2 1.1 48 436-486 11-60 (78)
219 2kiz_A E3 ubiquitin-protein li 31.0 7.6 0.00026 31.4 -0.8 47 436-485 14-60 (69)
220 1jm7_A BRCA1, breast cancer ty 31.0 11 0.00037 33.4 0.1 47 437-486 22-68 (112)
221 2egp_A Tripartite motif-contai 30.5 26 0.0009 28.7 2.5 47 436-485 12-62 (79)
222 1zbd_B Rabphilin-3A; G protein 29.6 20 0.00068 33.9 1.7 34 342-375 54-88 (134)
223 2d8s_A Cellular modulator of i 29.3 32 0.0011 29.4 2.8 49 436-485 15-67 (80)
224 2l0b_A E3 ubiquitin-protein li 29.0 7.3 0.00025 33.7 -1.3 47 436-485 40-86 (91)
225 3mpx_A FYVE, rhogef and PH dom 28.1 12 0.00042 41.1 0.0 36 342-377 374-409 (434)
226 2a20_A Regulating synaptic mem 27.8 8.2 0.00028 31.7 -1.1 48 342-389 8-59 (62)
227 4fo9_A E3 SUMO-protein ligase 27.6 35 0.0012 37.4 3.4 48 343-393 215-266 (360)
228 2jrp_A Putative cytoplasmic pr 26.9 10 0.00034 33.1 -0.8 41 344-393 3-43 (81)
229 1e8j_A Rubredoxin; iron-sulfur 26.7 60 0.002 25.7 3.7 17 471-488 32-48 (52)
230 2g45_A Ubiquitin carboxyl-term 25.8 46 0.0016 31.2 3.5 16 372-389 2-17 (129)
231 2zet_C Melanophilin; complex, 25.7 29 0.001 33.5 2.2 48 342-390 67-117 (153)
232 2ep4_A Ring finger protein 24; 25.7 17 0.00058 29.7 0.4 49 436-487 15-63 (74)
233 2d8t_A Dactylidin, ring finger 25.7 21 0.00072 29.0 1.0 45 435-485 14-58 (71)
234 2d8v_A Zinc finger FYVE domain 25.4 33 0.0011 28.8 2.0 31 342-377 7-38 (67)
235 2ox0_A JMJC domain-containing 25.2 9 0.00031 42.4 -1.8 38 533-589 138-177 (381)
236 3tj1_A RNA polymerase I-specif 25.1 16 0.00054 43.1 0.2 11 457-467 499-509 (649)
237 2ecv_A Tripartite motif-contai 24.9 16 0.00053 30.3 0.0 47 436-485 19-68 (85)
238 2lq6_A Bromodomain-containing 24.7 31 0.0011 30.1 1.9 36 341-376 15-50 (87)
239 2jne_A Hypothetical protein YF 23.8 27 0.00092 31.4 1.3 42 344-394 33-74 (101)
240 3nw0_A Non-structural maintena 23.2 20 0.00068 37.0 0.5 47 436-485 180-226 (238)
241 2lk0_A RNA-binding protein 5; 22.4 23 0.00077 25.3 0.5 11 474-484 3-13 (32)
242 2gmg_A Hypothetical protein PF 22.4 29 0.00098 31.6 1.3 29 359-392 67-95 (105)
243 4ayc_A E3 ubiquitin-protein li 22.3 16 0.00055 34.0 -0.5 43 437-485 54-96 (138)
244 2kn9_A Rubredoxin; metalloprot 22.1 40 0.0014 29.3 2.1 17 471-488 56-72 (81)
245 3fl2_A E3 ubiquitin-protein li 22.0 13 0.00043 33.9 -1.2 46 436-486 52-97 (124)
246 4a0k_B E3 ubiquitin-protein li 21.1 23 0.0008 32.6 0.4 28 455-485 82-109 (117)
247 2k1p_A Zinc finger RAN-binding 20.7 50 0.0017 23.6 2.0 15 473-487 3-17 (33)
248 2ckl_B Ubiquitin ligase protei 20.4 14 0.00049 35.3 -1.3 47 436-486 54-100 (165)
249 1dx8_A Rubredoxin; electron tr 20.1 57 0.0019 27.5 2.5 17 471-488 36-52 (70)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.30 E-value=8.3e-13 Score=122.41 Aligned_cols=100 Identities=31% Similarity=0.691 Sum_probs=74.9
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhh----cCCCCCCccccccccccCCCCcccccccceeeccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPER 416 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~----~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvper 416 (828)
.+...|.||.+..... .......|+..||..||..... ..+.||.|
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C----------------------------- 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC----------------------------- 54 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT-----------------------------
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcC-----------------------------
Confidence 3568999998874311 1235567999999999864321 11223333
Q ss_pred ccccCCchhhhhcccCCCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCCCCCCC
Q 003340 417 DQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPVALGSS 490 (828)
Q Consensus 417 dq~~~~seEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~~~g~~ 490 (828)
..|.+|+..+.+..||+|+.|+.+||++||.|+ ..+|.+.|||+.|.....|.+
T Consensus 55 --------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~s 109 (111)
T 2ysm_A 55 --------------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPS 109 (111)
T ss_dssp --------------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSCC
T ss_pred --------------------CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCCC
Confidence 368899988877889999999999999999998 889999999999988655544
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.23 E-value=3e-12 Score=119.47 Aligned_cols=92 Identities=27% Similarity=0.575 Sum_probs=69.3
Q ss_pred cccccccccccc------ccccceeccCCCccChhhHHHHh-------hcCCCCCCccccccccccCCCCccccccccee
Q 003340 344 QVCGICLSEEDK------RRLRGTLNCCSHYFCFTCIMEWS-------KVESRCPLCKQRFKTITKPERSTAGVDLRSVV 410 (828)
Q Consensus 344 ~~C~ICle~~~~------~~~~~~l~~CgH~FC~~CI~~w~-------~~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~v 410 (828)
..|.||+..-.. .........|+..||..||..+. ...+.||.|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C----------------------- 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC----------------------- 58 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG-----------------------
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc-----------------------
Confidence 469999876410 12234555699999999986432 123445555
Q ss_pred ecccccccccCCchhhhhcccCCCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 411 IQVPERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 411 iqvperdq~~~~seEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
..|.+|+...+...||+|+.|+.+||++||+|| ..+|.|+|||+.|..
T Consensus 59 --------------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 --------------------------KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp --------------------------CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred --------------------------CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 257889887777789999999999999999998 889999999999964
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.21 E-value=2e-11 Score=113.58 Aligned_cols=94 Identities=29% Similarity=0.648 Sum_probs=70.6
Q ss_pred CCccccccccccc-----cccccceeccCCCccChhhHHHH-------hhcCCCCCCccccccccccCCCCcccccccce
Q 003340 342 AKQVCGICLSEED-----KRRLRGTLNCCSHYFCFTCIMEW-------SKVESRCPLCKQRFKTITKPERSTAGVDLRSV 409 (828)
Q Consensus 342 ~~~~C~ICle~~~-----~~~~~~~l~~CgH~FC~~CI~~w-------~~~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~ 409 (828)
....|.||+..-. ..........|+..||..||..+ ....+.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------------------- 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK--------------------- 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC---------------------
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC---------------------
Confidence 3478999987521 11223456679999999999532 12345677664
Q ss_pred eecccccccccCCchhhhhcccCCCCcccccccccC-CCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 410 VIQVPERDQVYQPSEEDLRSFLDPYENVICSECHQG-GDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 410 viqvperdq~~~~seEel~~~ld~~e~~~C~vC~~~-~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
.|.+|+.. .+...||+|+.|+.+||++||+|+ ..+|.|+|||+.|+.
T Consensus 63 ----------------------------~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 ----------------------------TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp ----------------------------CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ----------------------------ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788875 344579999999999999999998 889999999999975
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=3.3e-11 Score=112.85 Aligned_cols=110 Identities=21% Similarity=0.473 Sum_probs=73.9
Q ss_pred CCccccccccccccc---cccceeccCCCccChhhHHHHhhcCCCCCCccccccccccCCCCcccccccceeeccccccc
Q 003340 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQ 418 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvperdq 418 (828)
+...|+||++.|... ...+++++|||.||..||..|+.....||+||+.+...... . +.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~----------~--l~i~---- 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH----------P--IYIG---- 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE----------E--CBCS----
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc----------c--cccC----
Confidence 458999999998632 12238889999999999999999989999999877542210 0 0000
Q ss_pred ccCCchhhhhcccCCCCcccccccccCCCC----cccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 419 VYQPSEEDLRSFLDPYENVICSECHQGGDD----GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 419 ~~~~seEel~~~ld~~e~~~C~vC~~~~~~----~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
.....|.+|...-.. ...+....|+..||..|+..-. .....||.|+..
T Consensus 70 ---------------~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~---~~~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 ---------------SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKK 122 (133)
T ss_dssp ---------------SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH---HHCSBCTTTCCB
T ss_pred ---------------CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH---HcCCCCCCCCCc
Confidence 123468888654211 1123456799999999987530 112589999984
No 5
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.00 E-value=9.4e-11 Score=93.90 Aligned_cols=47 Identities=36% Similarity=1.061 Sum_probs=43.3
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
.|.+|+..+....||+|+.|+.+||++||+|+ ..+|.|+|||+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58999988777789999999999999999988 889999999999975
No 6
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=104.65 Aligned_cols=51 Identities=33% Similarity=0.868 Sum_probs=46.4
Q ss_pred CCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 434 YENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 434 ~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
.+...|.+|+..+....||+|+.|+.+||++||+|| ..+|.++|||+.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 356689999998877889999999999999999998 889999999999976
No 7
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.98 E-value=4.1e-10 Score=93.76 Aligned_cols=50 Identities=38% Similarity=0.903 Sum_probs=43.7
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPVAL 487 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~~~ 487 (828)
...+|.+|+.++. ||+|+.|+.+||++||+|+ ..+|.|+|||+.|.....
T Consensus 8 ~~~~C~vC~~~g~---ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 8 HMEFCRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SCSSCTTTCCCSS---CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCcCCCCCCCCC---EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4568999987654 9999999999999999998 889999999999987543
No 8
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.98 E-value=5.4e-10 Score=99.39 Aligned_cols=48 Identities=29% Similarity=0.776 Sum_probs=43.6
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
+..+|.+|+.++. +|+|+.|+.+||++||.|+ ..+|.|+|+|+.|...
T Consensus 24 n~~~C~vC~~~g~---LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSSC---CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCCC---EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4568999998865 9999999999999999998 8899999999999875
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.97 E-value=3.1e-10 Score=90.92 Aligned_cols=51 Identities=31% Similarity=0.578 Sum_probs=43.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
....|+||++.+......+++++|+|.||..||..|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999998644445788889999999999999998899999998764
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=3.5e-10 Score=90.70 Aligned_cols=51 Identities=29% Similarity=0.639 Sum_probs=41.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
+...|+||++.+.......++..|+|.||..||..|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999998744333334359999999999999999999999998763
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.92 E-value=6.5e-10 Score=95.13 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=41.1
Q ss_pred CCccccccccccccccccceecc-CCCccChhhHHHHhhcC--CCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-CgH~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (828)
....|+||++.|. .++.++ |||.||..||..|+... ..||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT----TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3478999999987 578888 99999999999999865 689999987543
No 12
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.92 E-value=4.3e-10 Score=95.11 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=42.5
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
....|.+|+.++. ||+|+.|+.+||++||+|+ ..+|.|+|||+.|...
T Consensus 11 ~~~~C~vC~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTD---VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTT---CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCe---EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4457999987654 9999999999999999998 8999999999999764
No 13
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.91 E-value=9e-10 Score=101.96 Aligned_cols=95 Identities=16% Similarity=0.297 Sum_probs=76.0
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCcccccccccCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTASTNLYNRP 512 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~-~~g~~~~q~~~~~~~~f~~k~~~f~~p 512 (828)
+...|.+|+..+....||+|+.|+++||.+||+++ ..++.+.|+|+.|..- ..+... +. .+...++.+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~--------~~--~~ll~Cd~C 75 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG--------ED--SKMLVCDTC 75 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS--------CC--TTEEECSSS
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccC--------CC--CCeeECCCC
Confidence 45689999998875668999999999999999998 5567899999999643 333211 01 135678999
Q ss_pred CCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 513 SPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 513 ~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
...+|+. ||+|+|..+|.+.|.+..+.
T Consensus 76 ~~~yH~~-Cl~ppl~~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 76 DKGYHTF-CLQPVMKSVPTNGWKCKNCR 102 (111)
T ss_dssp CCEEEGG-GSSSCCSSCCSSCCCCHHHH
T ss_pred CcHHhHH-hcCCccccCCCCCcCCcCCc
Confidence 9999988 99999999999999988765
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=7.1e-10 Score=94.41 Aligned_cols=53 Identities=26% Similarity=0.708 Sum_probs=43.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
....|+||++.|..... .++++|+|.||..||..|+.....||+||+.+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDE-LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSCBCSSSCCBCCSSSC-EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCcCCCcccCCCCc-EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45789999999864332 344579999999999999998889999999886654
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=6.5e-10 Score=93.36 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=43.3
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|+||++.|... ...+.++|+|.||..||..|+.....||+||..+...
T Consensus 13 ~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 457899999988532 2456778999999999999999888999999887654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.3e-10 Score=93.48 Aligned_cols=49 Identities=29% Similarity=0.560 Sum_probs=41.9
Q ss_pred CCccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|+||++.+. .++.+ +|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLI----DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCS----SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHH----CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3478999999986 35554 8999999999999999889999999887653
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5.1e-10 Score=94.87 Aligned_cols=48 Identities=31% Similarity=0.686 Sum_probs=42.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .++.++|+|.||..||..|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4578999999986 56778899999999999999988999999988764
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.89 E-value=5e-10 Score=107.23 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=42.9
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
...|+||++.|. .+++++|||.||..||..|+.....||+||+.+...
T Consensus 53 ~~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC----CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 368999999986 578889999999999999999999999999987654
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5.7e-10 Score=93.10 Aligned_cols=51 Identities=24% Similarity=0.590 Sum_probs=42.3
Q ss_pred CCccccccccccccc---cccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
....|+||++.+... ....++++|+|.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 458899999998632 122378899999999999999998899999998774
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.87 E-value=6.5e-10 Score=93.54 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=43.2
Q ss_pred CCccccccccccccc---cccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.+... ....++++|||.||..||..|+.....||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 468899999998632 1233788999999999999999988999999988754
No 21
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.87 E-value=5.4e-10 Score=94.38 Aligned_cols=48 Identities=31% Similarity=0.889 Sum_probs=43.0
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
+..+|.+|+.++. ||+|+.|+.+||++||+|+ ..+|.|.|||+.|...
T Consensus 7 ~~~~C~vC~~~g~---ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSS---CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCC---EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 5668999998754 9999999999999999998 7899999999999864
No 22
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=5.1e-10 Score=93.15 Aligned_cols=48 Identities=35% Similarity=0.951 Sum_probs=42.6
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
...+|.+|+.++. ||+|+.|+.+||++||+|+ ..+|.|+|||+.|...
T Consensus 10 ~~~~C~vC~~~g~---ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGGE---IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCSS---EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCCc---EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4568999998654 9999999999999999998 7899999999999764
No 23
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=95.52 Aligned_cols=47 Identities=36% Similarity=0.938 Sum_probs=43.4
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-CCCCCC-CcccCCCCC
Q 003340 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g-~W~Cp~C~~ 484 (828)
.|.+|+..+....||+|+.|+.+||++||+|| ..+|.| +|||+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 79999988777789999999999999999998 889999 999999975
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=95.23 Aligned_cols=47 Identities=30% Similarity=0.661 Sum_probs=42.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
....|+||++.+. .+++++|||+||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc----CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4578999999986 5788899999999999999998889999999875
No 25
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.86 E-value=1e-09 Score=93.84 Aligned_cols=47 Identities=38% Similarity=0.920 Sum_probs=43.3
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-CCCCCC-CcccCCCCC
Q 003340 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g-~W~Cp~C~~ 484 (828)
.|.+|+..+....||+|+.|+.+||++||+|| ..+|.| +|||+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 78899988777889999999999999999998 889999 999999985
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.86 E-value=1.5e-09 Score=93.30 Aligned_cols=52 Identities=21% Similarity=0.580 Sum_probs=43.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|+||++.|.... ..+.++|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4578999999986332 335567999999999999999889999999988654
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=8.2e-10 Score=94.47 Aligned_cols=51 Identities=24% Similarity=0.689 Sum_probs=42.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.|.... ..+.++|+|.||..||..|+.....||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4578999999986432 23556799999999999999999999999987754
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=2e-09 Score=89.99 Aligned_cols=51 Identities=31% Similarity=0.858 Sum_probs=43.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
....|+||++.+.. ..++++|||.||..||..|+.....||+||..+..+.
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred CCCCCeeCCccccC---CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence 35789999999862 2377889999999999999998899999999886553
No 29
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.83 E-value=5e-10 Score=96.02 Aligned_cols=49 Identities=37% Similarity=1.059 Sum_probs=43.5
Q ss_pred CcccccccccCC--CCcccccccccccccccccCCCCCCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
+...|.+|+.++ ..+.||+|+.|+.+||++|++|+ .+|.|+|||+.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-cCCCCCcCCccCcC
Confidence 456899999875 56779999999999999999998 69999999999965
No 30
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.83 E-value=1.5e-09 Score=99.91 Aligned_cols=53 Identities=26% Similarity=0.579 Sum_probs=41.4
Q ss_pred CCcccccccccccccc--------------ccceeccCCCccChhhHHHHhh-----cCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRR--------------LRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~--------------~~~~l~~CgH~FC~~CI~~w~~-----~~~~CP~CR~~~~~i 394 (828)
....|+|||+.|.... ...++++|+|.||..||..|+. ....||+||..|...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999985321 2334788999999999999994 456899999988654
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=94.51 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=43.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcC---CCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (828)
....|+||++.|......+++++|||.||..||..|+... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4578999999997544347888999999999999999875 789999987654
No 32
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=94.58 Aligned_cols=52 Identities=29% Similarity=0.641 Sum_probs=41.0
Q ss_pred CCcccccccccccc-----------ccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDK-----------RRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~-----------~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.|.. .....+++.|+|.||..||..|+....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888753 22234555699999999999999999999999988754
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.82 E-value=1.2e-09 Score=89.86 Aligned_cols=52 Identities=25% Similarity=0.579 Sum_probs=42.4
Q ss_pred CCccccccccccccc---cccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
+...|+||++.+... ...+++++|||.||..||..|+.....||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 357899999998632 1233778899999999999999988899999987754
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=89.67 Aligned_cols=47 Identities=32% Similarity=0.939 Sum_probs=41.6
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
...+|.+|+..+. ||+|+.|+.+||++||+|+ ..+|.+.|+|+.|..
T Consensus 8 ~~~~C~vC~~~g~---ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSC---CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCe---EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4568999998754 9999999999999999998 789999999999964
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=91.22 Aligned_cols=48 Identities=31% Similarity=0.754 Sum_probs=41.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh---cCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~---~~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .+++++|||.||..||..|+. ....||+||+.+..
T Consensus 19 ~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4589999999987 577789999999999999996 35679999987754
No 36
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=96.89 Aligned_cols=51 Identities=33% Similarity=0.693 Sum_probs=42.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.|.... ..+.++|+|.||..||..|+.....||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4578999999986332 35566799999999999999998999999987743
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=98.22 Aligned_cols=47 Identities=30% Similarity=0.803 Sum_probs=41.7
Q ss_pred Ccccccccccccccccccee-ccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l-~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
...|+||++.|. .++. ++|||.||..||..|+... ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcccc----CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 489999999997 5777 8999999999999999877 689999998854
No 38
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=94.03 Aligned_cols=47 Identities=38% Similarity=0.929 Sum_probs=43.3
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-CCCCCCC-cccCCCCC
Q 003340 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGN-WYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~-W~Cp~C~~ 484 (828)
.|.+|+...+...||+|+.|+.+||++||+|| ..+|.|+ |||+.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 78899998888889999999999999999998 8899999 99999975
No 39
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.81 E-value=1.7e-09 Score=92.97 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=42.2
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (828)
....|+||++.|. .+++++|||+||..||..|+.. ...||+||..+..
T Consensus 7 ~~~~C~IC~~~~~----~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK----DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS----SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc----CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4689999999987 5788899999999999999986 6789999988754
No 40
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2e-09 Score=89.79 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=40.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .++.++|||.||..||..|+. ....||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC----SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES----SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc----CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4588999999986 466789999999999999994 56789999987754
No 41
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.80 E-value=1e-09 Score=90.87 Aligned_cols=47 Identities=32% Similarity=0.939 Sum_probs=41.8
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
....|.+|+.++. ||+|+.|+.+||++||+|+ ..+|.|.|||+.|..
T Consensus 4 ~~~~C~vC~~~g~---ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSGQ---LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCSS---CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCCc---EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4568999998754 9999999999999999998 789999999999965
No 42
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=2.6e-09 Score=88.83 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=40.8
Q ss_pred CCcccccccc-ccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccccc
Q 003340 342 AKQVCGICLS-EEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle-~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (828)
+...|+||++ .+.......++++|||.||..||..|+. ....||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 7764433346778999999999999965 45679999987754
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=91.25 Aligned_cols=48 Identities=29% Similarity=0.840 Sum_probs=41.9
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|+||++.+. . ++++|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~----~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRA----D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCC----S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCcc----C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4578999999986 2 7788999999999999999889999999887643
No 44
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.77 E-value=1.6e-09 Score=96.71 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=42.6
Q ss_pred cccccccccCCC--CcccccccccccccccccCCCC-C----CCCCCCcccCCCCC
Q 003340 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLG-R----VVPEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~--~~~~llCd~Cd~~~H~~CL~p~-~----~vP~g~W~Cp~C~~ 484 (828)
..+|.+|+.+.. ...||+|+.|+.+||++||+|+ . .+|.|.|||+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 468999998754 3579999999999999999998 4 38999999999976
No 45
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.77 E-value=8.2e-10 Score=98.51 Aligned_cols=50 Identities=36% Similarity=1.032 Sum_probs=44.1
Q ss_pred CcccccccccCC--CCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+...|.+|+.++ ..+.||+|+.|+.+||++|++|+ .+|.|.|||+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~-~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS-SCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC-ccCCCceECccccCc
Confidence 457899999875 55679999999999999999998 699999999999763
No 46
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=91.71 Aligned_cols=48 Identities=29% Similarity=0.605 Sum_probs=41.2
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc-------CCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-------ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-------~~~CP~CR~~~~~ 393 (828)
....|+||++.|. .+++++|||.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECS----SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccC----CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4588999999986 4677899999999999999876 5679999998764
No 47
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.76 E-value=1.2e-09 Score=92.02 Aligned_cols=51 Identities=22% Similarity=0.629 Sum_probs=42.7
Q ss_pred CcccccccccCC--CCcccccccccccccccccCCCC-CC--C-CCCCcccCCCCCC
Q 003340 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLG-RV--V-PEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~-~~--v-P~g~W~Cp~C~~~ 485 (828)
+...|.+|+.+. ....||+|+.|+.+||++||+|+ .. + |.+.|||+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 556899999873 34679999999999999999997 33 3 8999999999763
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.76 E-value=3.5e-09 Score=93.81 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=40.6
Q ss_pred CCccccccccccccccccceecc-CCCccChhhHHHHhhcC--CCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE--SRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-CgH~FC~~CI~~w~~~~--~~CP~CR~~~~ 392 (828)
....|+||++.|. .+++++ |||+||..||..|+... ..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS----SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc----CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4589999999987 578888 99999999999998643 58999998874
No 49
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.75 E-value=4.2e-09 Score=91.14 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=41.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc------CCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~------~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .+++++|+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS----SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC----cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4578999999986 5678889999999999999987 6679999988754
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=99.36 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=41.2
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
...|+||++.|. .++.++|||.||..||..|+... ..||+||..+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 479999999987 67888999999999999999754 489999998865
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.74 E-value=4.6e-09 Score=96.78 Aligned_cols=53 Identities=26% Similarity=0.623 Sum_probs=42.8
Q ss_pred cCCccccccccccccccc--------------cceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 341 VAKQVCGICLSEEDKRRL--------------RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~--------------~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
.....|+||++.|...-. ..++++|+|.||..||..|+....+||+||+.|..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 356789999999863311 23557899999999999999999999999998754
No 52
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=7.3e-09 Score=89.57 Aligned_cols=48 Identities=31% Similarity=0.717 Sum_probs=41.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc------CCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~------~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .+++++|+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT----QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS----SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC----CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999999986 4677789999999999999876 6789999988764
No 53
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.74 E-value=4.4e-09 Score=97.69 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=72.0
Q ss_pred cccccccccC------CCCcccccccccccccccccCCCC----CCCCCCCcccCCCCC-CCCCCCCCCCCCCCCccccc
Q 003340 436 NVICSECHQG------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRP-VALGSSSSQAQDPLPDLRTA 504 (828)
Q Consensus 436 ~~~C~vC~~~------~~~~~~llCd~Cd~~~H~~CL~p~----~~vP~g~W~Cp~C~~-~~~g~~~~q~~~~~~~~f~~ 504 (828)
..+|.+|... +..+.||.|+.|+.+||.+||++. ..++.+.|+|+.|.. ...+.... + ..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~-------~--~~ 75 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK-------N--AD 75 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC-------T--TC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCC-------C--cc
Confidence 3478888654 334579999999999999999852 357789999999964 33332100 0 11
Q ss_pred ccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 505 STNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 505 k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
....++.++..+|+. ||+|+|...|.+.|.+..++
T Consensus 76 ~ll~Cd~C~~~yH~~-Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHME-CCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CCEECTTTCCEECGG-GCSSCCSSCCSSCCCCTTTS
T ss_pred ceEEcCCCCCeeecc-cCCCCCCCCCCCCeECCCCC
Confidence 346789999999987 99999999999999998775
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=5.8e-09 Score=86.07 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=36.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh---cCCCCCCc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLC 387 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~---~~~~CP~C 387 (828)
....|+||++.+. .+++++|||.||..||..|+. ....||+|
T Consensus 19 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4589999999987 578889999999999999997 35679998
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.73 E-value=4.6e-09 Score=96.10 Aligned_cols=48 Identities=27% Similarity=0.623 Sum_probs=42.2
Q ss_pred CCccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.+. .++.+ +|||.||..||..|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI----DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh----CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3589999999986 46765 999999999999999988999999998765
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.72 E-value=4.9e-09 Score=94.33 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=41.4
Q ss_pred Cccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
...|+||++.|. .++.+ +|||.||..||..|+.....||+||..+..
T Consensus 22 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN----IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC----CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 478999999987 46665 899999999999999988899999998765
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.68 E-value=8.1e-09 Score=91.13 Aligned_cols=48 Identities=6% Similarity=-0.127 Sum_probs=43.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..+.|+||++.|. .|++++|||+||..||..|+....+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhc----CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4689999999997 78999999999999999999888899999988754
No 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=82.71 Aligned_cols=42 Identities=31% Similarity=0.878 Sum_probs=35.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh---cCCCCCCc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLC 387 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~---~~~~CP~C 387 (828)
....|+||++.+. .+++++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK----EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS----SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC----ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999987 467788999999999999954 56779998
No 59
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.65 E-value=9.3e-09 Score=105.18 Aligned_cols=47 Identities=34% Similarity=0.840 Sum_probs=42.7
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
+..+|.+|+.++. +++|++|+.+||++||+|+ ..+|.|+|+|+.|..
T Consensus 6 ~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SCSSBTTTCCCEE---EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCc---eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 4567999998765 9999999999999999998 889999999999987
No 60
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.65 E-value=6.8e-09 Score=89.56 Aligned_cols=50 Identities=34% Similarity=0.724 Sum_probs=43.9
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
+..+|.+|+...+...||+|+.|+.+||++||+++ ..+|.+.|||+.|..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 45689999998777789999999999999999998 566779999999975
No 61
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.65 E-value=7.4e-09 Score=106.77 Aligned_cols=48 Identities=38% Similarity=0.901 Sum_probs=39.9
Q ss_pred ccccccccCCCCcccccccccccccccccCCCC-CCCCCC-CcccCCCCC
Q 003340 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG-NWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g-~W~Cp~C~~ 484 (828)
..|.+|+..++...||+|+.|+.+||++||+|| ..+|.| +|+|+.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 379999988777789999999999999999998 889999 999999975
No 62
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.64 E-value=1.1e-08 Score=102.56 Aligned_cols=46 Identities=33% Similarity=0.834 Sum_probs=42.2
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
..+|.+|+.++. +++|++|+.+||++||.|+ ..+|.|.|+|+.|..
T Consensus 4 ~~~C~~C~~~g~---ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 4 EDWCAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSSCTTTCCCSS---CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccCCCCCe---eeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 457999998766 9999999999999999998 889999999999987
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=1.1e-08 Score=93.44 Aligned_cols=47 Identities=32% Similarity=0.727 Sum_probs=40.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcC---CCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~---~~CP~CR~~~~~ 393 (828)
...|+||++.+. .+++++|||.||..||..|+... ..||+||..+..
T Consensus 21 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK----EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS----SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc----CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 478999999986 56778999999999999999765 479999998764
No 64
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.63 E-value=9.2e-09 Score=95.85 Aligned_cols=93 Identities=17% Similarity=0.320 Sum_probs=71.4
Q ss_pred ccccccccCC-------CCcccccccccccccccccCCCC----CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCccccc
Q 003340 437 VICSECHQGG-------DDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTA 504 (828)
Q Consensus 437 ~~C~vC~~~~-------~~~~~llCd~Cd~~~H~~CL~p~----~~vP~g~W~Cp~C~~~-~~g~~~~q~~~~~~~~f~~ 504 (828)
.+|.+|..++ ..+.||+|+.|+.+||.+||++. ..+|.+.|+|+.|... ..+... + ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~--------~--~~ 71 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE--------N--DD 71 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT--------T--TT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccC--------C--CC
Confidence 3688886643 24579999999999999999986 2478899999999543 333221 0 11
Q ss_pred ccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 505 STNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 505 k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
....++.+...+|++ ||+|+|..+|.+.|.+..+.
T Consensus 72 ~ll~Cd~C~~~yH~~-Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 72 QLLFCDDCDRGYHMY-CLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp TEEECSSSCCEEETT-TSSSCCSSCCSSCCCCHHHH
T ss_pred ceEEcCCCCcccccc-ccCCCccCCCCCCeECcccc
Confidence 456789999999998 99999999999999987553
No 65
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=99.49 Aligned_cols=48 Identities=21% Similarity=0.480 Sum_probs=41.8
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCC-CCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~-~CP~CR~~~~~i 394 (828)
...|+||++.|. .+++++|||+||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc----CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 388999999987 678899999999999999998654 799999988654
No 66
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.63 E-value=1.1e-08 Score=93.06 Aligned_cols=48 Identities=6% Similarity=-0.114 Sum_probs=43.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..+.|+||++.|. .|++++|||+||..||..|+....+||+|+.++..
T Consensus 28 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT----DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS----SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc----CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4689999999997 78999999999999999999888889999988754
No 67
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.62 E-value=6.4e-09 Score=96.10 Aligned_cols=47 Identities=26% Similarity=0.635 Sum_probs=41.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (828)
...|+||++.+. .++.++|||+||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 478999999987 5788899999999999999876 5679999998875
No 68
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.62 E-value=1.7e-08 Score=93.10 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=64.3
Q ss_pred CcccccccccCCCCccccccc--ccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRP 512 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd--~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p 512 (828)
+..+|.+|+.++. ||+|+ .|+.+||++||++. .+|.|+||||.|.....+.... ..+..+
T Consensus 14 ~~~~C~~C~~~G~---ll~CD~~~Cp~~fH~~Cl~L~-~~P~g~W~Cp~c~C~~C~k~~~--------------~~C~~C 75 (107)
T 4gne_A 14 HEDYCFQCGDGGE---LVMCDKKDCPKAYHLLCLNLT-QPPYGKWECPWHQCDECSSAAV--------------SFCEFC 75 (107)
T ss_dssp SCSSCTTTCCCSE---EEECCSTTCCCEECTGGGTCS-SCCSSCCCCGGGBCTTTCSBCC--------------EECSSS
T ss_pred CCCCCCcCCCCCc---EeEECCCCCCcccccccCcCC-cCCCCCEECCCCCCCcCCCCCC--------------cCcCCC
Confidence 5568999996654 99999 89999999999965 7999999999998866653311 237788
Q ss_pred CCCcCCCcccCCCCCCCCCCCCCC
Q 003340 513 SPIVSFGEGFDPYSVSSPRIPLTP 536 (828)
Q Consensus 513 ~~~~~~~~~ldp~l~~~pr~~~~~ 536 (828)
+..++.. +++..|...+..-|.+
T Consensus 76 p~sfC~~-c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 76 PHSFCKD-HEKGALVPSALEGRLC 98 (107)
T ss_dssp SCEECTT-TCTTSCEECTTTTCEE
T ss_pred Ccchhhh-ccCCcceecCCCCcee
Confidence 8878765 7788777776666654
No 69
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.59 E-value=1.5e-08 Score=99.62 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=40.3
Q ss_pred Cccccccccccccccccceec-cCCCccChhhHHHHhhc-CCCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (828)
...|+||++.|. .++.+ +|||.||..||..|+.. ...||+||..+..
T Consensus 54 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK----NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh----CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 478999999987 45655 89999999999999986 6779999998754
No 70
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.59 E-value=2e-08 Score=91.13 Aligned_cols=48 Identities=8% Similarity=-0.100 Sum_probs=43.5
Q ss_pred CCccccccccccccccccceeccCC-CccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCS-HYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg-H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..+.|+||++.|. .|++++|| |+||..||..|+....+||+|+.++..
T Consensus 21 ~~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc----CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4689999999997 78999999 999999999999888889999988764
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.59 E-value=6.6e-09 Score=97.37 Aligned_cols=54 Identities=26% Similarity=0.628 Sum_probs=1.9
Q ss_pred ccCCccccccccccccccc--------------cceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 340 EVAKQVCGICLSEEDKRRL--------------RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~--------------~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
+.....|+||++.|..... ..++++|+|.||..||..|+....+||+||+.|..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3456799999999863211 22335799999999999999999999999998754
No 72
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.4e-08 Score=82.42 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=38.9
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
.....|+||++.|. .+++++|||+||..||..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK----CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB----CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC----CeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 35688999999987 5788899999999999875 5679999987754
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.2e-08 Score=86.62 Aligned_cols=52 Identities=31% Similarity=0.740 Sum_probs=41.4
Q ss_pred CCccccccccccccccccceeccCC-----CccChhhHHHHhhcC--CCCCCccccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--SRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~~--~~CP~CR~~~~~i~ 395 (828)
....|.||++.+... ..++++|. |.||..||..|+... .+||+||..|....
T Consensus 14 ~~~~C~IC~~~~~~~--~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSS--SCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCC--CeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 457899999988633 34567886 999999999999865 48999999886543
No 74
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.57 E-value=1.9e-08 Score=93.61 Aligned_cols=48 Identities=27% Similarity=0.617 Sum_probs=41.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCC-CCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~-~CP~CR~~~~~ 393 (828)
....|+||++.+. .++.++|||.||..||..|+.... .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhc----CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3479999999987 578889999999999999998765 89999987754
No 75
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.56 E-value=2.8e-08 Score=100.46 Aligned_cols=46 Identities=30% Similarity=0.810 Sum_probs=41.9
Q ss_pred ccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
..|.+|+.++. +++|++|+.+||++||.|+ ..+|.|+|+|+.|...
T Consensus 3 ~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS---CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCc---eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 47999998875 9999999999999999988 7899999999999874
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.55 E-value=2.9e-08 Score=91.84 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=41.9
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~i 394 (828)
...|+||++.+. .++.++|||.||..||..|+.. ...||+||..+...
T Consensus 23 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILA----DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhc----CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 478999999987 5788899999999999999986 67899999987653
No 77
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.54 E-value=5.9e-08 Score=84.47 Aligned_cols=51 Identities=16% Similarity=0.436 Sum_probs=38.4
Q ss_pred CCccccccccccccccccceec--cCCCccChhhHHHHhh-cCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK-VESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~i 394 (828)
....|+||++.+... .+... +|||.||..||..|.. ....||+||+.+...
T Consensus 10 ~~~~CpICle~~~~~--d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEID--DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTT--TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccc--cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 458899999988522 12333 4999999999998754 456799999988654
No 78
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=2.4e-08 Score=92.79 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=39.7
Q ss_pred CCccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
....|+||++.|. .++++ +|||+||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR----EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh----CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4589999999987 57777 8999999999999987 78999999874
No 79
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.50 E-value=4.4e-08 Score=84.00 Aligned_cols=44 Identities=23% Similarity=0.622 Sum_probs=38.7
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
...|+||++.+. .+++++|||. ||..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 478999999986 5788899999 999999999 7899999988654
No 80
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=6.8e-08 Score=101.20 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=42.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
....|+||++.|. .|++++|||+||..||..|+... .+||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS----SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhc----CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4689999999997 78999999999999999999764 459999988854
No 81
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.42 E-value=1.3e-07 Score=85.82 Aligned_cols=49 Identities=33% Similarity=0.863 Sum_probs=41.3
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
+.+.| +|+.......||+|+.|..+||+.|++|+ ..+| ..|+|+.|...
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 34567 78887777789999999999999999998 6677 48999999864
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.41 E-value=5.5e-08 Score=93.78 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=40.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCC-CCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES-RCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~-~CP~CR~~~~ 392 (828)
....|+||++.+. .++.++|||.||..||..|+.... .||+||..+.
T Consensus 30 ~~~~C~IC~~~~~----~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLR----RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhc----CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4589999999987 578889999999999999998664 7999998653
No 83
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.41 E-value=8.3e-08 Score=89.56 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=42.8
Q ss_pred CCccccccccccccc---cccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKR---RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|+||++.+... ....++++|||.||..||..|+....+||+||..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 568899999998631 1223778899999999999999999999999987754
No 84
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.38 E-value=1e-07 Score=79.56 Aligned_cols=49 Identities=33% Similarity=0.720 Sum_probs=40.9
Q ss_pred CCccccccccccccccccceec--cCCCc-cChhhHHHHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN--CCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|.||++.+. .++++ +|||. ||..|+..|......||+||+.+..+
T Consensus 7 ~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 3468999999875 34555 89999 89999999998888999999988654
No 85
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=84.43 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=38.9
Q ss_pred CCccccccccccccccccceecc-CCCccChhhHHHHhhcC------CCCCC--cccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC-CSHYFCFTCIMEWSKVE------SRCPL--CKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~-CgH~FC~~CI~~w~~~~------~~CP~--CR~~ 390 (828)
..+.||||++.|. .|++++ |||+||..||..|+... .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~----dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK----KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS----SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc----CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4589999999997 689985 99999999999998753 47999 9865
No 86
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.36 E-value=2.6e-07 Score=79.12 Aligned_cols=50 Identities=42% Similarity=0.905 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCCC
Q 003340 433 PYENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 433 ~~e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+.+..+| +|+.... ..||.|+. |. .+||+.|+++. .+|.+.||||.|...
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECCCCCcc
Confidence 3356688 7998765 45999999 77 69999999986 688899999999863
No 87
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.35 E-value=1.7e-07 Score=103.89 Aligned_cols=48 Identities=27% Similarity=0.829 Sum_probs=42.1
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~i 394 (828)
...|+||++.+. .+++++|||.||..||..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC----CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC----CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 378999999986 578899999999999999998 677899999987654
No 88
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.34 E-value=1.4e-07 Score=78.46 Aligned_cols=48 Identities=25% Similarity=0.710 Sum_probs=39.9
Q ss_pred Cccccccccccccccccceec--cCCCc-cChhhHHHHhhcCCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLN--CCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~--~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
...|+||++... .++++ +|||. ||..|+..|......||+||+.+..+
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 468999999864 34555 89998 99999999988778899999988654
No 89
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=3.9e-07 Score=78.70 Aligned_cols=49 Identities=20% Similarity=0.565 Sum_probs=40.0
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcC--CCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (828)
...|+||++.|... ..+..|+|.||..||.+|++.. .+||+|++.+...
T Consensus 15 i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 46899999998733 2344799999999999999876 7899999877643
No 90
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.31 E-value=4.5e-07 Score=81.24 Aligned_cols=51 Identities=43% Similarity=0.918 Sum_probs=41.8
Q ss_pred CCCCcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCCC
Q 003340 432 DPYENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
++.+..+| +|+.... ..||.|+. |. .+||+.|+++. .+|.+.||||.|...
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECcCccCc
Confidence 44456788 9998765 35999999 66 79999999987 678899999999863
No 91
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.30 E-value=2.6e-07 Score=92.63 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=41.9
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
..+.||||++.|. .|++++|||+||..||..|+... .+||+|+.++..
T Consensus 105 ~~f~CPI~~elm~----DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCC----CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4589999999997 68999999999999999999764 469999988754
No 92
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.24 E-value=3.3e-07 Score=90.27 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=41.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
..+.|+||++.+. .|+.++|||+||..||..|+... ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhc----CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4589999999987 57888999999999999999765 489999988755
No 93
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.24 E-value=1.6e-07 Score=77.86 Aligned_cols=48 Identities=42% Similarity=0.904 Sum_probs=39.2
Q ss_pred CCcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCC
Q 003340 434 YENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 434 ~e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
.+..+| +|+.... ..|+.|+. |. .+||+.|+++. .+|.|.||||.|..
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECcCccC
Confidence 355678 8998765 46999999 55 79999999986 78889999999964
No 94
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.3e-07 Score=77.26 Aligned_cols=44 Identities=23% Similarity=0.622 Sum_probs=36.9
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
...|+||++.+. .+++++|||. ||..|+..+ ..||+||..+...
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 368999999986 5788899999 999999643 6799999988654
No 95
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.20 E-value=4.7e-07 Score=80.95 Aligned_cols=48 Identities=38% Similarity=0.787 Sum_probs=39.8
Q ss_pred CCcccccccccCCCCcccccccccc---cccccccCCCCCCCCCCCcccCC-CCC
Q 003340 434 YENVICSECHQGGDDGLMLLCDICD---SSAHTYCVGLGRVVPEGNWYCDG-CRP 484 (828)
Q Consensus 434 ~e~~~C~vC~~~~~~~~~llCd~Cd---~~~H~~CL~p~~~vP~g~W~Cp~-C~~ 484 (828)
.+..+| +|+..... .||.||.|+ .+||+.|+++. .+|.+.||||. |..
T Consensus 24 ~~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCCCC-cCCCCCccCChhhcc
Confidence 355688 89986654 599999977 89999999987 67889999999 863
No 96
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.17 E-value=2.7e-07 Score=76.27 Aligned_cols=49 Identities=39% Similarity=0.829 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCC
Q 003340 433 PYENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 433 ~~e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
+.+..+| +|+.... ..|+.||. |. .+||+.|+++. .+|.|.||||.|..
T Consensus 6 ~~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECcCccC
Confidence 3356688 8998655 35999999 77 69999999987 67889999999965
No 97
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.3e-06 Score=73.99 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=38.5
Q ss_pred CCccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
....|.||++... .+++++|+|. ||..|+.. ...||+||..+....
T Consensus 14 ~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 14 NSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCcCcCCC----CEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 4578999999875 5788999999 99999973 468999999886654
No 98
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.14 E-value=3.5e-07 Score=76.36 Aligned_cols=49 Identities=41% Similarity=0.851 Sum_probs=39.2
Q ss_pred CCCcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCC
Q 003340 433 PYENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 433 ~~e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
+.+..+| +|+..... .|+.|+. |. .+||+.|+++. .+|.+.||||.|..
T Consensus 8 ~~e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCcC-cCCCCCEECcCccc
Confidence 3456688 89986553 5999999 54 89999999987 67889999999965
No 99
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.13 E-value=9.9e-07 Score=76.75 Aligned_cols=45 Identities=29% Similarity=0.776 Sum_probs=38.3
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
...|+||++.+. .+++++|||. ||..|+..| ..||+||..+....
T Consensus 18 ~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEI----NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBC----CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccC----cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 368999999876 5788899999 999999877 38999999887653
No 100
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.5e-06 Score=91.37 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=40.7
Q ss_pred cCCcccccccccccccccccee-ccCCCccChhhHHHHhhcC--CCCCC--ccccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVE--SRCPL--CKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l-~~CgH~FC~~CI~~w~~~~--~~CP~--CR~~~~~ 393 (828)
.....||||++.|. .|+. ..|||+||..||..|+... ..||+ |++.+..
T Consensus 179 ~~el~CPIcl~~f~----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS----SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 35689999999997 6786 4899999999999998653 46999 9987654
No 101
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.94 E-value=2.5e-06 Score=93.68 Aligned_cols=46 Identities=24% Similarity=0.709 Sum_probs=39.8
Q ss_pred CCccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
....|+||++.+. .+++++|||. ||..|+..| ..||+||..+....
T Consensus 294 ~~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 294 EERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 4589999999986 6788899999 999999988 67999999886543
No 102
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.90 E-value=4e-06 Score=69.54 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.2
Q ss_pred ccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 344 QVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
+.|+||++.+. .+++. .|||+|+..||..|+....+||+++.++..
T Consensus 4 ~~CpIs~~~m~----dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR----RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS----SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCC----CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 68999999987 67888 899999999999999887889999987754
No 103
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=2.7e-06 Score=72.66 Aligned_cols=47 Identities=38% Similarity=0.760 Sum_probs=38.6
Q ss_pred CcccccccccCCCCcccccccccc---cccccccCCCCCCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICD---SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd---~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
+..+| +|+..... .||.||.|+ .+||+.|+++. .+|.+.|||+.|..
T Consensus 5 ~~~yC-~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 5 SSGYC-ICNQVSYG-EMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCCS-TTSCCCCS-SEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCHHHHH
T ss_pred CCeEE-EcCCCCCC-CEeEeCCCCCCccCCcccccccC-cCCCCCEECCCCCc
Confidence 44577 58877554 699999986 79999999987 57889999999975
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.83 E-value=3.9e-06 Score=80.96 Aligned_cols=48 Identities=27% Similarity=0.754 Sum_probs=41.6
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCC--------CCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRV--------VPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~--------vP~g~W~Cp~C~~~~ 486 (828)
..+|.+|+.++. +++|+.|.++||..||.|+.. .|.++|+|+.|...+
T Consensus 63 ~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 63 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp BCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 468999999887 999999999999999998622 489999999998753
No 105
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.82 E-value=5.6e-06 Score=70.25 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 432 DPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
.+.+..+| +|+...+...||.|+.|..+||..|+++. ..+| ..|+|+.|..
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 34456788 99998777789999999999999999987 3444 6899999965
No 106
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.80 E-value=1.1e-05 Score=66.77 Aligned_cols=48 Identities=23% Similarity=0.625 Sum_probs=36.7
Q ss_pred CCccccccccccccccccceeccCC--C---ccChhhHHHHhhc--CCCCCCccccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCS--H---YFCFTCIMEWSKV--ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg--H---~FC~~CI~~w~~~--~~~CP~CR~~~~~ 393 (828)
....|.||++... .+.+.+|. + .||..||..|+.. ..+||+|+..|..
T Consensus 5 ~~~~CrIC~~~~~----~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG----NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC----CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5578999998743 23356654 4 9999999999975 5679999988753
No 107
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=6.1e-06 Score=73.53 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=35.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc--------CCCCCC--cccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPL--CKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--------~~~CP~--CR~~ 390 (828)
....|+||++.+.... ...+.+|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3578999999986321 1223479999999999987653 236999 9987
No 108
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.76 E-value=7.4e-06 Score=88.95 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=39.8
Q ss_pred cCCccccccccccccccccc--e--eccCCCccChhhHHHHhhcC-----------CCCCCccccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRG--T--LNCCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~--~--l~~CgH~FC~~CI~~w~~~~-----------~~CP~CR~~~~~ 393 (828)
.....|+||++.+......| + .+.|+|.||..||.+|++.. ..||.|++++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35678999999987522222 2 34799999999999999742 459999987754
No 109
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.53 E-value=3.6e-05 Score=69.57 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=40.0
Q ss_pred cccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccccccc
Q 003340 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTIT 395 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~i~ 395 (828)
.|++|.-++. ..+.+++|.|.||+.|+..|.+ ....||.|+.++..+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 5888987764 4678889999999999999985 5688999999887765
No 110
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.52 E-value=1.9e-05 Score=63.36 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=38.4
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
..+| +|+...+...|+.|+.|..+||..|+++. ..+| ..|+|+.|..
T Consensus 4 ~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp CBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 3456 78887776789999999999999999987 3344 6899999864
No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.52 E-value=2.6e-05 Score=66.68 Aligned_cols=49 Identities=31% Similarity=0.608 Sum_probs=38.9
Q ss_pred CcccccccccCCC-CcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
...+| +|+...+ ...|+.|+.|..+||..|+++. .......|+|+.|..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34678 7998754 4579999999999999999987 222347899999975
No 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.51 E-value=2.1e-05 Score=65.48 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=40.4
Q ss_pred CcccccccccCCC-CcccccccccccccccccCCCC-CCCC-CCCcccCCCCCC
Q 003340 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~~vP-~g~W~Cp~C~~~ 485 (828)
+..+|.+|+...+ ...|+.|+.|..+||..|+++. .... ...|+|+.|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4467999998753 4679999999999999999987 2222 368999999763
No 113
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.47 E-value=2.5e-05 Score=66.11 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=37.2
Q ss_pred CcccccccccCCCCcccccccc--cccccccccCCCCCC-----CCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDI--CDSSAHTYCVGLGRV-----VPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~--Cd~~~H~~CL~p~~~-----vP~g~W~Cp~C~~ 484 (828)
+.+.| +|+.......|+.|+. |..+||..|+++... .....|||+.|+.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 44678 7988766678999995 999999999997511 1124799999964
No 114
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.47 E-value=2e-05 Score=68.44 Aligned_cols=53 Identities=28% Similarity=0.567 Sum_probs=41.4
Q ss_pred CCCCcccccccccCCCCccccccc--ccccccccccCCCCCC------CCCCCcccCCCCCC
Q 003340 432 DPYENVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLGRV------VPEGNWYCDGCRPV 485 (828)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~~llCd--~Cd~~~H~~CL~p~~~------vP~g~W~Cp~C~~~ 485 (828)
++....+| +|+.......|+.|+ .|..+||..|++++.. .....|||+.|...
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 33456788 899986667899999 9999999999998721 11368999999763
No 115
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.37 E-value=4.3e-05 Score=66.47 Aligned_cols=50 Identities=30% Similarity=0.677 Sum_probs=39.4
Q ss_pred CcccccccccCCC-CcccccccccccccccccCCCC-C-CCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-R-VVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~-~vP~g~W~Cp~C~~~ 485 (828)
...+| +|+...+ ...||.|+.|..+||..|+++. . ......|+|+.|...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34577 8998754 5779999999999999999986 2 122368999999874
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.29 E-value=4.2e-05 Score=61.40 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=36.2
Q ss_pred ccccccccCCC-Cccccccc-ccccccccccCCCC-CCCCCCCcccCCCC
Q 003340 437 VICSECHQGGD-DGLMLLCD-ICDSSAHTYCVGLG-RVVPEGNWYCDGCR 483 (828)
Q Consensus 437 ~~C~vC~~~~~-~~~~llCd-~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~ 483 (828)
..|.+|....+ ...|+.|+ .|..+||..|+++. .......|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35778888754 56799999 89999999999986 22223789999995
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.28 E-value=1.5e-05 Score=68.71 Aligned_cols=48 Identities=27% Similarity=0.717 Sum_probs=39.1
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCC------CCCCcccCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVV------PEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~v------P~g~W~Cp~C~~ 484 (828)
..+| +|+.......|+.|+.|..+||..|+++.... +...|+|+.|..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 4678 89988776789999999999999999986111 347899999975
No 118
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.23 E-value=2e-05 Score=66.28 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=38.9
Q ss_pred cccccccccCC-CCccccccc-ccccccccccCCCCC-------CCCCCCcccCCCC
Q 003340 436 NVICSECHQGG-DDGLMLLCD-ICDSSAHTYCVGLGR-------VVPEGNWYCDGCR 483 (828)
Q Consensus 436 ~~~C~vC~~~~-~~~~~llCd-~Cd~~~H~~CL~p~~-------~vP~g~W~Cp~C~ 483 (828)
...|.+|.... ....|+.|+ .|..+||..|+++.. ..|.+.|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45799999874 456799999 999999999999871 1377899999985
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.22 E-value=5.7e-05 Score=71.74 Aligned_cols=49 Identities=27% Similarity=0.802 Sum_probs=40.8
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC------CCC--CCCCcccCCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG------RVV--PEGNWYCDGCRPVA 486 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~------~~v--P~g~W~Cp~C~~~~ 486 (828)
...+|.+|+.++. +++|+.|.++||..||.|+ ..+ |.+.|+|+.|...+
T Consensus 56 ~~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 3457999998877 9999999999999999974 123 78999999998753
No 120
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.21 E-value=2.7e-05 Score=77.07 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=39.5
Q ss_pred CcccccccccCCC-CcccccccccccccccccCCCC--CCCCCCCcccCCCCC
Q 003340 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~--~~vP~g~W~Cp~C~~ 484 (828)
+..+| +|+...+ ...|+.|+.|..+||..|+++. .....+.|+|+.|..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45689 9998743 5679999999999999999976 223357899999986
No 121
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.14 E-value=5.8e-05 Score=69.29 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=38.8
Q ss_pred ccccccccCC-CCccccccc-ccccccccccCCCCC----C---CCCCCcccCCCCCC
Q 003340 437 VICSECHQGG-DDGLMLLCD-ICDSSAHTYCVGLGR----V---VPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~-~~~~~llCd-~Cd~~~H~~CL~p~~----~---vP~g~W~Cp~C~~~ 485 (828)
..|.+|...- ....|+.|+ .|..+||..|+++.. . .|.+.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 4799999872 234588898 999999999999861 1 36689999999864
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.07 E-value=0.00026 Score=65.20 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=29.9
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-CCCCCCCccc
Q 003340 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYC 479 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~C 479 (828)
.|.+|++... +.|..|+.+||..|+... ...+...|+|
T Consensus 60 ~C~~C~k~~~----~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 60 QCDECSSAAV----SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp BCTTTCSBCC----EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCcCCCCCC----cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 3556766543 789999999999999876 5567788998
No 123
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.90 E-value=9.4e-05 Score=63.73 Aligned_cols=48 Identities=31% Similarity=0.727 Sum_probs=37.6
Q ss_pred cccccccccCCC-CcccccccccccccccccCCCC-CCCCC-CCcccCCCCC
Q 003340 436 NVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVPE-GNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~~vP~-g~W~Cp~C~~ 484 (828)
..+| +|+...+ ...||.|+.|..+||..|+++. ...+. ..|+|+.|..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3466 8887643 5679999999999999999987 32332 5799999976
No 124
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=67.60 Aligned_cols=49 Identities=20% Similarity=0.565 Sum_probs=38.7
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcC--CCCCCcccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (828)
-..|.||.+.+..+ ..+..|+|.||..|+..|++.. ..||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46799999998633 3444599999999999998754 4799999876543
No 125
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.16 E-value=0.0014 Score=74.89 Aligned_cols=37 Identities=30% Similarity=0.599 Sum_probs=30.5
Q ss_pred CcccccccccccccccccCCCC-CC-CCCCCcccCCCCC
Q 003340 448 DGLMLLCDICDSSAHTYCVGLG-RV-VPEGNWYCDGCRP 484 (828)
Q Consensus 448 ~~~~llCd~Cd~~~H~~CL~p~-~~-vP~g~W~Cp~C~~ 484 (828)
...|+.||.|+.+||..|+++. .. .....|+||.|..
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 4569999999999999999987 22 2347899999986
No 126
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.06 E-value=0.0011 Score=66.71 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=36.9
Q ss_pred cccccccCCCCc----ccccccccccccccccCCCCC-------CCCC-CCcccCCCCCC
Q 003340 438 ICSECHQGGDDG----LMLLCDICDSSAHTYCVGLGR-------VVPE-GNWYCDGCRPV 485 (828)
Q Consensus 438 ~C~vC~~~~~~~----~~llCd~Cd~~~H~~CL~p~~-------~vP~-g~W~Cp~C~~~ 485 (828)
+|.+|+..-.+. .|+.|+.|+.+||..|+++.. .+|+ ..|+||.|...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 688898764332 499999999999999999861 1232 37999999884
No 127
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.56 E-value=0.0011 Score=75.89 Aligned_cols=49 Identities=33% Similarity=0.670 Sum_probs=38.4
Q ss_pred CcccccccccCCC-CcccccccccccccccccCCCC-CCCC-CCCcccCCCCC
Q 003340 435 ENVICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~~vP-~g~W~Cp~C~~ 484 (828)
...+| +|+...+ ...|+.|+.|..+||..|++.. .... ...|+|+.|..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 45667 9988643 5679999999999999999987 2222 25799999975
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.53 E-value=0.0047 Score=54.03 Aligned_cols=50 Identities=20% Similarity=0.573 Sum_probs=38.3
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-------------CCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-------------RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-------------~~vP~g~W~Cp~C~~~ 485 (828)
....|.+|..-... .++-|..|.+.||..||..+ ...+..-|.|+.|..-
T Consensus 14 ~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 45689999876543 38889999999999999752 1235667999999763
No 129
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.10 E-value=0.0015 Score=74.01 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=36.7
Q ss_pred ccccccccCCC-CcccccccccccccccccCCCC-CCCC-CCCcccCCCCC
Q 003340 437 VICSECHQGGD-DGLMLLCDICDSSAHTYCVGLG-RVVP-EGNWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~-~~vP-~g~W~Cp~C~~ 484 (828)
.+| +|+...+ ...|+.|+.|..+||..|++.. ...+ ...|+|+.|..
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 355 8888643 5679999999999999999987 2222 36799999975
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=95.09 E-value=0.029 Score=47.61 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=46.6
Q ss_pred cccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCC-CCCCCCC
Q 003340 461 AHTYCVGLGRVVPEGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRI-PLTPGSG 539 (828)
Q Consensus 461 ~H~~CL~p~~~vP~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~-~~~~~~~ 539 (828)
|+.+|.+ ..+|+|+.|.....+... + ......++.+...+|+. ||+|+|..+|.+ .|.+..+
T Consensus 4 ~c~~c~~------~~~w~C~~C~C~~C~~~~--------~--~~~ll~CD~C~~~yH~~-Cl~Ppl~~~P~g~~W~C~~C 66 (70)
T 3asl_A 4 SCKHCKD------DVNRLCRVCACHLCGGRQ--------D--PDKQLMCDECDMAFHIY-CLDPPLSSVPSEDEWYCPEC 66 (70)
T ss_dssp SCTTTTT------CTTSCCTTTSBTTTCCCS--------C--GGGEEECTTTCCEEEGG-GSSSCCSSCCSSSCCCCTTT
T ss_pred ccccccC------CCCeECCCCCCcCCCCcC--------C--CCCEEEcCCCCCceecc-cCCCCcCCCCCCCCcCCcCc
Confidence 4555543 357999999655554321 0 12456789999999998 999999999999 9999887
Q ss_pred C
Q 003340 540 N 540 (828)
Q Consensus 540 ~ 540 (828)
.
T Consensus 67 ~ 67 (70)
T 3asl_A 67 R 67 (70)
T ss_dssp S
T ss_pred c
Confidence 6
No 131
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.62 E-value=0.046 Score=47.26 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=41.6
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCC-CCCCCCCC
Q 003340 475 GNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRI-PLTPGSGN 540 (828)
Q Consensus 475 g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~-~~~~~~~~ 540 (828)
..|+|+.|.....+.... .....+++.++..+|+. ||+|||..+|.+ .|.+..+.
T Consensus 20 ~~w~C~~c~C~vC~~~~~----------~~~ll~CD~C~~~yH~~-Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHE----------PNMQLLCDECNVAYHIY-CLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCCSSSSCSSSCCCCC----------STTEEECSSSCCEEETT-SSSSCCSSCCCSSCCCCTTTC
T ss_pred CCeECCCCCCcCcCCcCC----------CCCEEEcCCCCcccccc-ccCCCccCCCCCCCcCCcCcc
Confidence 358888886655553210 11456789999999998 999999999999 99998775
No 132
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.33 E-value=0.032 Score=49.76 Aligned_cols=33 Identities=21% Similarity=0.547 Sum_probs=24.8
Q ss_pred CCccccccccc-cccccccceeccCCCccChhhHHH
Q 003340 342 AKQVCGICLSE-EDKRRLRGTLNCCSHYFCFTCIME 376 (828)
Q Consensus 342 ~~~~C~ICle~-~~~~~~~~~l~~CgH~FC~~CI~~ 376 (828)
+...|+||++. +..+ ....+.|+|.||..||..
T Consensus 2 ee~~C~~C~~~~~~~a--v~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA--VKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBC--CEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCc--eEECCcCChHHhHHHCHH
Confidence 35789999975 3322 334488999999999997
No 133
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=94.24 E-value=0.046 Score=47.31 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=43.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCC-CCCCCCC
Q 003340 474 EGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIP-LTPGSGN 540 (828)
Q Consensus 474 ~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~-~~~~~~~ 540 (828)
.++|+|+.|.....+... + ......++.+...+|+. ||+|+|..+|.+. |.+..+.
T Consensus 19 ~~~W~C~~C~C~vC~~~~--------d--~~~ll~CD~C~~~yH~~-Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 19 DVNRLCRVCACHLCGGRQ--------D--PDKQLMCDECDMAFHIY-CLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp CTTSCCTTTSBTTTCCCS--------C--GGGEEECTTTCCEEETT-TSSSCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCCCcCCccCCCC--------C--CcceeEeCCCCCccCcc-cCCCcccCCCCCCceECcCcc
Confidence 367999999665554321 1 12457789999999998 9999999999998 9998775
No 134
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=94.22 E-value=0.019 Score=53.02 Aligned_cols=39 Identities=21% Similarity=0.552 Sum_probs=29.3
Q ss_pred CCcccccccccccccccccCCCC-CCCCC----CCcccCCCCCC
Q 003340 447 DDGLMLLCDICDSSAHTYCVGLG-RVVPE----GNWYCDGCRPV 485 (828)
Q Consensus 447 ~~~~~llCd~Cd~~~H~~CL~p~-~~vP~----g~W~Cp~C~~~ 485 (828)
.+..|+.|+.|+.+||..|+++. ..++. ..|+||.|...
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 34568899999999999999986 33333 34999999874
No 135
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.18 E-value=0.032 Score=49.79 Aligned_cols=49 Identities=35% Similarity=0.873 Sum_probs=39.3
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.+-..|-.|+-... ..+.+..|++|+.||...+.++..||+|..++.+-
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 45688999998753 44554469999999999999999999999877553
No 136
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=92.95 E-value=0.07 Score=55.10 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCC-CCCCCCCC
Q 003340 473 PEGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRI-PLTPGSGN 540 (828)
Q Consensus 473 P~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~-~~~~~~~~ 540 (828)
+.++|.|..|.+..++.... ......|+.|...+|+. ||+|||...|.+ .|.|..|.
T Consensus 166 ~~~~w~C~~c~C~vC~~~~~----------~~~lL~CD~C~~~yH~~-CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 166 DDVNRLCRVCACHLCGGRQD----------PDKQLMCDECDMAFHIY-CLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TCTTSCCTTTSCSSSCCCCC------------CCEECSSSCCEECSC-C--CCCCSCCSSSCCCCGGGC
T ss_pred CCcCEecCCCCCcCCCCCCC----------CCCeEEcCCCCcceeCc-cCCCCcccCCCCCCCCCcCCc
Confidence 45679999998776664311 11457799999999998 999999999999 99999886
No 137
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.65 E-value=0.059 Score=45.23 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=33.9
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhh----cCCCCCCcccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQR 390 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~----~~~~CP~CR~~ 390 (828)
.....|.||.+.-. ......|...||..|+...+. ..+.||.|...
T Consensus 10 ~~~~~C~vC~~~~~----ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTD----VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTT----CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCe----EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34578999986522 455667999999999986654 34789999753
No 138
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.11 E-value=0.37 Score=42.73 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=41.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 003340 474 EGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSS 543 (828)
Q Consensus 474 ~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s 543 (828)
..+++|..|...+ ....++.++..+|++ ||+|+|..+|.+.|.|..|...-
T Consensus 23 ~n~~~C~vC~~~g------------------~LL~CD~C~~~fH~~-Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKPG------------------DLVMCNQCEFCFHLD-CHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSSS------------------CCEECTTSSCEECTT-SSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCCC------------------CEEECCCCCCceecc-cCCCCCCCCcCCCcCCccccCCC
Confidence 3468899888631 236789999999998 99999999999999999998543
No 139
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.48 E-value=0.46 Score=38.99 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=39.1
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCC
Q 003340 475 GNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNL 541 (828)
Q Consensus 475 g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~ 541 (828)
.+++|..|.... ....++.++..+|+. ||+|+|..+|.+.|.+..+..
T Consensus 8 ~~~~C~vC~~~g------------------~ll~Cd~C~~~fH~~-Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCKDGG------------------ELLCCDTCPSSYHIH-CLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTCCCS------------------SCBCCSSSCCCBCSS-SSSSCCSSCCSSCCCCTTTTT
T ss_pred CCCcCCCCCCCC------------------CEEEcCCCCHHHccc-ccCCCcCcCCCCccCChhhcC
Confidence 468888887511 236688899999988 999999999999999998863
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=90.34 E-value=0.15 Score=47.07 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=28.7
Q ss_pred cccccccccccccccCCCC-------CCCCC-CCcccCCCCCC
Q 003340 451 MLLCDICDSSAHTYCVGLG-------RVVPE-GNWYCDGCRPV 485 (828)
Q Consensus 451 ~llCd~Cd~~~H~~CL~p~-------~~vP~-g~W~Cp~C~~~ 485 (828)
|+.|+.|..|||..|++.. ..+|. -.|.||.|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 8899999999999999864 23453 46999999875
No 141
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.90 E-value=0.67 Score=45.92 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=41.8
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003340 475 GNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSP 544 (828)
Q Consensus 475 g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~ 544 (828)
.+++|..|..+ +....|+.|+..+|+. ||+|+|...|.+.|.|.+|.....
T Consensus 3 ~~~~C~~C~~~------------------g~ll~Cd~C~~~~H~~-C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG------------------GELLCCEKCPKVFHLS-CHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC------------------SSCEECSSSSCEECTT-TSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC------------------CeeeecCCCCcccCcc-ccCCCCCCCCCCCEECccccCccc
Confidence 46789888752 1246789999999987 999999999999999999996553
No 142
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.57 E-value=0.18 Score=41.97 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=40.8
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCC
Q 003340 473 PEGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNL 541 (828)
Q Consensus 473 P~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~ 541 (828)
+..+|+|..|...+ ....++.++..+|+. ||+|+|..+|.+.|.+..+..
T Consensus 5 ~~~~~~C~vC~~~g------------------~ll~CD~C~~~fH~~-Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGG------------------ELICCDGCPRAFHLA-CLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCS------------------SCEECSSCCCEECTT-TSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCC------------------CEEEcCCCChhhccc-ccCCCcCcCCCCCeECccccC
Confidence 45679999998621 236688999999987 999999999999999988763
No 143
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.09 E-value=0.14 Score=42.13 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=33.7
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhh-----cCCCCCCccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQ 389 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-----~~~~CP~CR~ 389 (828)
.+...|+||...+...........|..+||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 356789999988743333334556899999999863221 3567999975
No 144
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.69 E-value=0.8 Score=40.17 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=23.9
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHH
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w 377 (828)
..+..|.||-- |....+.+.- .|+..||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence 35689999953 3333333333 38999999999874
No 145
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.59 E-value=0.32 Score=39.16 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCC
Q 003340 474 EGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSG 539 (828)
Q Consensus 474 ~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~ 539 (828)
..+++|..|... .....++.++..+|+. ||+|+|...|.+.|.+..+
T Consensus 7 ~~~~~C~vC~~~------------------g~ll~Cd~C~~~~H~~-Cl~ppl~~~p~g~W~C~~C 53 (56)
T 2yql_A 7 GHEDFCSVCRKS------------------GQLLMCDTCSRVYHLD-CLDPPLKTIPKGMWICPRC 53 (56)
T ss_dssp SSCCSCSSSCCS------------------SCCEECSSSSCEECSS-SSSSCCCSCCCSSCCCHHH
T ss_pred CCCCCCccCCCC------------------CeEEEcCCCCcceECc-cCCCCcCCCCCCceEChhh
Confidence 346889999762 1235688899999987 9999999999999988755
No 146
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.96 E-value=0.53 Score=47.64 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=41.5
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 003340 475 GNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSS 543 (828)
Q Consensus 475 g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s 543 (828)
.+++|..|..++ ....|+.|+..+|+. ||+|+|...|.+.|.|..|....
T Consensus 6 ~~~~C~~C~~~g------------------~ll~Cd~C~~~~H~~-Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG------------------DLLCCEKCPKVFHLT-CHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE------------------EEEECSSSSCEECTT-TSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC------------------ceEEcCCCCCccCCc-cCCCCCCCCCCCCEEeCceeCcc
Confidence 467899987521 246789999999987 99999999999999999998654
No 147
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.26 E-value=0.46 Score=39.00 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 474 EGNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 474 ~g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
..+++|..|... .....++.++..+|+. ||+|++..+|.+.|.+..+.
T Consensus 9 ~~~~~C~vC~~~------------------g~ll~CD~C~~~fH~~-Cl~p~l~~~p~g~W~C~~C~ 56 (61)
T 2l5u_A 9 DHQDYCEVCQQG------------------GEIILCDTCPRAYHMV-CLDPDMEKAPEGKWSCPHCE 56 (61)
T ss_dssp CCCSSCTTTSCC------------------SSEEECSSSSCEEEHH-HHCTTCCSCCCSSCCCTTGG
T ss_pred CCCCCCccCCCC------------------CcEEECCCCChhhhhh-ccCCCCCCCCCCceECcccc
Confidence 356899999762 1236688899999988 99999999999999999875
No 148
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.14 E-value=1.5 Score=38.67 Aligned_cols=35 Identities=31% Similarity=0.803 Sum_probs=28.0
Q ss_pred ccccccccccc-ccccccCCCCCCCCCCCcccCCCCCC
Q 003340 449 GLMLLCDICDS-SAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 449 ~~~llCd~Cd~-~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
-.|++|..|.. +.|..|.... .....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~--~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR--PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC--TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc--CCCCCEECCcCccc
Confidence 35999999995 6899998863 34568999999963
No 149
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.73 E-value=0.39 Score=39.13 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=37.7
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 475 GNWYCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 475 g~W~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
.+++|..|...+ ....++.++..+|+. ||+|+|...|.+.|.+..+.
T Consensus 4 ~~~~C~vC~~~g------------------~ll~Cd~C~~~fH~~-Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRKSG------------------QLLMCDTCSRVYHLD-CLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCCCS------------------SCEECSSSSCEECGG-GSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCCcCCCCCC------------------cEEEcCCCCcCEECC-cCCCCcCCCCCCceEChhcc
Confidence 468888887621 235688899999987 99999999999999987664
No 150
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.55 E-value=0.97 Score=40.01 Aligned_cols=53 Identities=30% Similarity=0.556 Sum_probs=37.3
Q ss_pred CCcccccccccccc---ccccceeccCCCccChhhHH-HHhhcCCCCCCcccccccc
Q 003340 342 AKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~-~w~~~~~~CP~CR~~~~~i 394 (828)
....|.||-+.+.- .....-+.-|+--.|..|.. .+......||.|+++|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 55899999998531 11122233488889999997 4455677899999988643
No 151
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=83.78 E-value=1.2 Score=44.46 Aligned_cols=38 Identities=8% Similarity=-0.072 Sum_probs=33.5
Q ss_pred cccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003340 506 TNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSP 544 (828)
Q Consensus 506 ~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~ 544 (828)
...|+.|+..+|+. ||+|++...|++.|.|..|.....
T Consensus 14 ll~Cd~C~~~~H~~-Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 14 LVMCNQCEFCFHLD-CHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCCTTTCCBCCST-TSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred eeECCCCCchhccc-cCCCCcccCCCCCCCCcCccCCCC
Confidence 46789999999988 999999999999999999986543
No 152
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.90 E-value=0.74 Score=44.28 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=34.5
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHHHh-----------hcCCCCCCccc
Q 003340 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----------KVESRCPLCKQ 389 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~-----------~~~~~CP~CR~ 389 (828)
+.....|.||.+... ...+..|...||..||..-+ ...+.||+|..
T Consensus 60 Dg~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456789999998743 44566799999999998433 23578999963
No 153
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.86 E-value=0.76 Score=40.84 Aligned_cols=36 Identities=11% Similarity=-0.175 Sum_probs=31.9
Q ss_pred ccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCC
Q 003340 505 STNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNL 541 (828)
Q Consensus 505 k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~ 541 (828)
...+++.+...+|+. ||+|+|..+|.+.|.|..|..
T Consensus 30 ~ll~CD~C~~~~H~~-Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 30 KLLFCDGCDDNYHIF-CLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp GCEECTTTCCEECSS-SSSSCCSSCCSSCCCCHHHHH
T ss_pred CEEEcCCCCchhccc-cCCCCcccCCCCCcCCccCcC
Confidence 457789999999998 999999999999999998863
No 154
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.32 E-value=0.32 Score=41.32 Aligned_cols=50 Identities=18% Similarity=0.469 Sum_probs=34.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh----cCCCCCCcccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~----~~~~CP~CR~~~~ 392 (828)
+...|.||..... ......+..|...||..|+..-.. ..+.||.|...+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3467999988753 222344556999999999974332 3567999976543
No 155
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.95 E-value=0.91 Score=39.42 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=26.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK 379 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~ 379 (828)
..+.|.+|.+.+....++-....=.|.||+.|-...++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 45889999999875544322222359999999887765
No 156
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=80.34 E-value=0.34 Score=40.48 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=32.0
Q ss_pred CCccccccccccccccccceec-cCCCccChhhHHHHh------h----cCCCCCCcc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWS------K----VESRCPLCK 388 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~------~----~~~~CP~CR 388 (828)
....|++|...+........+. .|...||+.|+.--. . ..+.||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4578999999876554444555 799999999975111 1 256699885
No 157
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=79.58 E-value=0.43 Score=43.48 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=33.0
Q ss_pred Cccccccccccccccccceec-cCCCccChhhHHHH----h------hcCCCCCCccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEW----S------KVESRCPLCKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w----~------~~~~~CP~CR~~~ 391 (828)
...|+||...+........+. .|..+||..|+.-- . .....||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 367999999875433323343 68899999997511 1 1457799998654
No 158
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=79.11 E-value=1.1 Score=42.30 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=33.3
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHHH------h-----hcCCCCCCccc
Q 003340 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW------S-----KVESRCPLCKQ 389 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w------~-----~~~~~CP~CR~ 389 (828)
+.....|.||.+... ......|...||..||..- . ...+.|+.|..
T Consensus 54 Dg~~~~C~vC~dGG~----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSE----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCe----eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 445678999998743 3445678899999999853 1 23478999954
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=78.69 E-value=0.45 Score=46.53 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=38.3
Q ss_pred cccccccccCCCCccccccc--ccccccccccCCCC-------CCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLG-------RVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd--~Cd~~~H~~CL~p~-------~~vP~g~W~Cp~C~~~~ 486 (828)
..+|.+|+.++. +++|+ .|...|+..||... ..+....|.|-.|.+.+
T Consensus 79 ~~yC~wC~~Gg~---l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCGGRE---VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSCCSE---EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecCCCe---EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 458999998875 99999 79999999999732 12446789999999854
No 160
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=77.96 E-value=1 Score=44.84 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=32.5
Q ss_pred cccccccCC-CCcccccccccccccccccCCCC--CCCCC---CCcccCCCCCCC
Q 003340 438 ICSECHQGG-DDGLMLLCDICDSSAHTYCVGLG--RVVPE---GNWYCDGCRPVA 486 (828)
Q Consensus 438 ~C~vC~~~~-~~~~~llCd~Cd~~~H~~CL~p~--~~vP~---g~W~Cp~C~~~~ 486 (828)
+| -|+..+ ....|+.|..|.++||..|+..+ .-+|- ....|..|...+
T Consensus 7 yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 7 SV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -----CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred EE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 45 577654 35679999999999999999854 34551 235699998754
No 161
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=77.53 E-value=0.87 Score=45.52 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=34.1
Q ss_pred Cccccccccccccccc---cceeccCCCccChhhHHHH------hh-----cCCCCCCcccccc
Q 003340 343 KQVCGICLSEEDKRRL---RGTLNCCSHYFCFTCIMEW------SK-----VESRCPLCKQRFK 392 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~---~~~l~~CgH~FC~~CI~~w------~~-----~~~~CP~CR~~~~ 392 (828)
+..|+||...+..... ...+..|..+||..|+.-- +. ....||.|+....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3579999998865432 2345568899999997521 11 2578999987543
No 162
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.74 E-value=0.6 Score=38.53 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=34.6
Q ss_pred cCCccccccccccc-cccccceeccCCCccChhhHHHHh-------hcCCCCCCcccc
Q 003340 341 VAKQVCGICLSEED-KRRLRGTLNCCSHYFCFTCIMEWS-------KVESRCPLCKQR 390 (828)
Q Consensus 341 ~~~~~C~ICle~~~-~~~~~~~l~~CgH~FC~~CI~~w~-------~~~~~CP~CR~~ 390 (828)
.+...|.||..... ..........|...||+.|+..-+ ...+.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 35688999997642 122345566799999999987422 245789999653
No 163
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=75.81 E-value=1.6 Score=39.95 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=44.2
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC---------C--CCccccc
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALGSSSSQAQD---------P--LPDLRTA 504 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g~~~~q~~~---------~--~~~~f~~ 504 (828)
..+|.+|++.+ |+.|...||++|++++ .|.|..|.............. . ....+..
T Consensus 7 C~~C~~C~~~~-------C~~C~~c~~~~~~~~~------~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~ 73 (117)
T 4bbq_A 7 CRKCKACVQGE-------CGVCHYCRDMKKFGGP------GRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEK 73 (117)
T ss_dssp CSCSHHHHSCC-------CSCSHHHHHSGGGTSC------CCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGG
T ss_pred CCcCcCcCCcC-------CCCCCCCcCCcccCCC------CccccchhheeeccccccccccccccCcccccccccccCc
Confidence 45777887642 9999999999999875 255555543211111000000 0 0111222
Q ss_pred ccccCCCCCCCcCCCcccCCCCCC
Q 003340 505 STNLYNRPSPIVSFGEGFDPYSVS 528 (828)
Q Consensus 505 k~~~f~~p~~~~~~~~~ldp~l~~ 528 (828)
+...+..+...+|.. ++.+....
T Consensus 74 ~m~~C~~C~~~~H~~-C~~~~~~~ 96 (117)
T 4bbq_A 74 KLMECCICNEIVHPG-CLQMDGEG 96 (117)
T ss_dssp SCEEETTTCCEECGG-GCCSCCCC
T ss_pred ceEEeeecCCeEECC-CCCCCccc
Confidence 344578888888866 77765433
No 164
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.25 E-value=0.8 Score=40.38 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCccccccccccc-cccccceeccCCCccChhhHHHHh--hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEED-KRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~-~~~~~~~l~~CgH~FC~~CI~~w~--~~~~~CP~CR~~ 390 (828)
+...|.||..... .......+..|...||+.|+..-. ...+.||.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 5688999997631 112244556799999999997432 346789999653
No 165
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.58 E-value=1.6 Score=34.51 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=28.8
Q ss_pred cccccccccccccccceec-cCCCccChhhHHHH----hhcCCCCCCcc
Q 003340 345 VCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEW----SKVESRCPLCK 388 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w----~~~~~~CP~CR 388 (828)
.|.||...+.....-.... .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988875333223344 58889999997621 13567799985
No 166
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.90 E-value=2.4 Score=36.32 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh-----hcCCCCCCccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----KVESRCPLCKQRF 391 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~-----~~~~~CP~CR~~~ 391 (828)
....| ||...+........+..|..+||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 45677 9988764232333445689999999986221 1356799998644
No 167
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=73.60 E-value=0.9 Score=50.32 Aligned_cols=48 Identities=29% Similarity=0.607 Sum_probs=37.9
Q ss_pred cccccccccCCCCccccccc--ccccccccccCCCC------CC-CCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCD--ICDSSAHTYCVGLG------RV-VPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd--~Cd~~~H~~CL~p~------~~-vP~g~W~Cp~C~~~~ 486 (828)
..+|.+|+.++. +++|+ .|.+.||..|+... .. .....|.|-.|.+..
T Consensus 93 ~~yCr~C~~Gg~---l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCCCSS---CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCCCCe---EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 458999998876 99999 89999999999742 11 224679999999854
No 168
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.88 E-value=0.88 Score=38.60 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=33.9
Q ss_pred cCCcccccccccc-ccccccceeccCCCccChhhHHHHh--hcCCCCCCccc
Q 003340 341 VAKQVCGICLSEE-DKRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQ 389 (828)
Q Consensus 341 ~~~~~C~ICle~~-~~~~~~~~l~~CgH~FC~~CI~~w~--~~~~~CP~CR~ 389 (828)
.....|.||.... ...........|...||..|+..-. ...+.||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4568899998763 1122345566799999999997432 34578999964
No 169
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.71 E-value=1.6 Score=34.04 Aligned_cols=34 Identities=9% Similarity=-0.067 Sum_probs=30.0
Q ss_pred cccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003340 506 TNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 506 ~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
...++.+...+|+. ||+|+|...|.+.|.+..+.
T Consensus 15 ll~Cd~C~~~~H~~-Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 15 LILCDECNKAFHLF-CLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CEECTTTCCEECHH-HHCTTCCSCCSSCCSCTTTS
T ss_pred EEECCCCChhhCcc-cCCCCcCCCCCCcEECcCcc
Confidence 46688888899988 99999999999999999876
No 170
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.82 E-value=1.9 Score=38.32 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=28.8
Q ss_pred CCccccccccccccccccceecc--CC-CccChhhHHHHh--hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--Cg-H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (828)
....| ||...... ....+.. |. .+||+.|+.--. ...+.||.|+..
T Consensus 35 e~~yC-iC~~~~~g--~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCS--CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCC--CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 44678 99887532 1223344 55 689999986211 235789999753
No 171
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=68.51 E-value=1.7 Score=38.91 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=29.5
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhh---cCCCCCCccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK---VESRCPLCKQ 389 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~---~~~~CP~CR~ 389 (828)
...| ||....... ....+..|..+||..|+..-.. ..+.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 887765422 2344556899999999864222 2467999964
No 172
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=68.09 E-value=1.1 Score=43.70 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=32.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh-----hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-----KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~-----~~~~~CP~CR~~ 390 (828)
+...| ||............+..|..+||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 55789 9998754333333455689999999985211 235779999764
No 173
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=63.51 E-value=0.85 Score=49.98 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=28.9
Q ss_pred CCCCCCC--CCCCCcccCCcccCCCCCCCCCCCcccchhhHHHHHHhhcccccCCCCCC
Q 003340 534 LTPGSGN--LSSPRFTVGDVQAASPGSGAGAPTLTGRRWIHRHIQNLLSMNRMNFMSGN 590 (828)
Q Consensus 534 ~~~~~~~--~~s~~~ygadih~~s~~s~~gf~t~~~~~~l~~~i~~~~s~~~~~~~~~~ 590 (828)
.++.||+ +..+..||||++ || +|+.. .++|||++++..
T Consensus 121 lE~~fW~~~~~~~p~YgaD~~----gS--~F~~~-------------~~~WNL~~L~~~ 160 (354)
T 3dxt_A 121 LERKYWKNRIYNSPIYGADIS----GS--LFDEN-------------TKQWNLGHLGTI 160 (354)
T ss_dssp HHHHHHHHGGGCCCEEEEEEE----CC--CSCTT-------------CCSSCTTSSCCH
T ss_pred HHHHHhhhcccCCceeeecCC----Cc--ccCCC-------------cchhhhhhccch
Confidence 4788886 456779999998 55 88852 579999999643
No 174
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.81 E-value=1.2 Score=37.44 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=31.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh----hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS----KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~----~~~~~CP~CR~~ 390 (828)
+...| ||............+..|..+||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 45779 7988754332223445689999999986321 234669999753
No 175
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.31 E-value=2.8 Score=35.42 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCccccccccccccccccceecc--CC-CccChhhHHHHh--hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--Cg-H~FC~~CI~~w~--~~~~~CP~CR~~ 390 (828)
....| ||..... . ....+.. |. ..||+.|+.--. ...+.||.|...
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 34678 8988643 1 1222334 55 699999986211 245679999653
No 176
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.32 E-value=2.2 Score=36.24 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=31.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHH---------hhcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW---------SKVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w---------~~~~~~CP~CR~~ 390 (828)
+...| ||....... ....+..|..+||..|+.-- ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 45678 898886522 22334468899999998521 1246779999753
No 177
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.88 E-value=2.5 Score=35.45 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh---hcCCCCCCccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS---KVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~---~~~~~CP~CR~ 389 (828)
....| ||..... ......+..|..+||..|+.--. .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45778 9988764 22223344589999999986322 23466999964
No 178
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.78 E-value=2.5 Score=37.11 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=30.3
Q ss_pred cccCCCCCCCcCCCcccCCCCCC----CCCCCCCCCCCCC
Q 003340 506 TNLYNRPSPIVSFGEGFDPYSVS----SPRIPLTPGSGNL 541 (828)
Q Consensus 506 ~~~f~~p~~~~~~~~~ldp~l~~----~pr~~~~~~~~~~ 541 (828)
..+++.+...||++ ||+|+|.. .|.+.|.|..|..
T Consensus 33 ll~CD~C~~~yH~~-Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 33 LVECQECHNLYHQD-CHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp EEECSSSCCEEETT-TSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred eEECCCCCCeEcCc-cCCCcccccccCCCCCCeeCccccc
Confidence 46788999999988 99999985 8999999998863
No 179
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.10 E-value=7.6 Score=43.01 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=33.7
Q ss_pred ccCCccccccccccccccccceec--cCCCccChhhHHHHhh----------cCCCCCCccc
Q 003340 340 EVAKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK----------VESRCPLCKQ 389 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~--~CgH~FC~~CI~~w~~----------~~~~CP~CR~ 389 (828)
+.....|.||-+... ...+. .|...||..||..++- ..+.|-+|..
T Consensus 90 DG~~~yCr~C~~Gg~----l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGET----LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCSS----CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCCe----EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 445678999988643 34444 6889999999997661 3478999964
No 180
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=53.73 E-value=2.1 Score=30.51 Aligned_cols=24 Identities=46% Similarity=1.131 Sum_probs=15.9
Q ss_pred cccCCCC---CCCCCCCcccCCCCCCC
Q 003340 463 TYCVGLG---RVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 463 ~~CL~p~---~~vP~g~W~Cp~C~~~~ 486 (828)
+||+... ...-+|+|.|..|.+.+
T Consensus 2 tycielgercpnpregdwcchkcvpeg 28 (36)
T 4b2u_A 2 TYCIELGERCPNPREGDWCCHKCVPEG 28 (36)
T ss_dssp CSSCCTTSBCCCGGGCCSSSSEEEEET
T ss_pred ceeeeccccCcCCCccCeeeecccccC
Confidence 4566543 23347999999998743
No 181
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.71 E-value=2.8 Score=37.09 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.4
Q ss_pred CcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...+|.+|+.. .+.++.+.|..|..+.+..|+.. +.-+|+-.||.|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY--ErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY--ERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH--HHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH--HHhccCccccccCCc
Confidence 44689999864 34567889999999999999885 356789999999874
No 182
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=53.69 E-value=7.5 Score=37.96 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=32.4
Q ss_pred ccCCccccccccccccccccceec--cCCCccChhhHHHHhh----------cCCCCCCccc
Q 003340 340 EVAKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWSK----------VESRCPLCKQ 389 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~--~CgH~FC~~CI~~w~~----------~~~~CP~CR~ 389 (828)
+.....|.||-+... ...+. .|...||..||..++- ..+.|-+|.-
T Consensus 76 DG~~~yC~wC~~Gg~----l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGRE----VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCSE----EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCCe----EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 445678999998642 23333 5889999999986652 2467999963
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=51.56 E-value=3.6 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=26.0
Q ss_pred Cccccc--cccccccc--cccceec-----cCCCccChhhHHHHhhcCCCCC
Q 003340 343 KQVCGI--CLSEEDKR--RLRGTLN-----CCSHYFCFTCIMEWSKVESRCP 385 (828)
Q Consensus 343 ~~~C~I--Cle~~~~~--~~~~~l~-----~CgH~FC~~CI~~w~~~~~~CP 385 (828)
...||- |...+... ....++. .|++.||+.|...|.. ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 456776 76654311 1123343 6999999999999966 4554
No 184
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.08 E-value=3.5 Score=35.24 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCccccccccccccccccceec--cCCCccChhhHHHHh---------hcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYFCFTCIMEWS---------KVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~CgH~FC~~CI~~w~---------~~~~~CP~CR~~ 390 (828)
+...| ||....... ....+. .|..+||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45778 898874322 222344 688999999985221 135679999753
No 185
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=49.05 E-value=6.3 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=22.4
Q ss_pred ccccccccccccCCCC--CCCCCCCcccCCCCCCC
Q 003340 454 CDICDSSAHTYCVGLG--RVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 454 Cd~Cd~~~H~~CL~p~--~~vP~g~W~Cp~C~~~~ 486 (828)
...|...||..||..- .......-.||.|+...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3468999999998742 11123456899999853
No 186
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.87 E-value=5.8 Score=32.43 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=23.6
Q ss_pred Cccccccccccccccc--cceecc--CCCccChhhHHHHhhc
Q 003340 343 KQVCGICLSEEDKRRL--RGTLNC--CSHYFCFTCIMEWSKV 380 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~--~~~l~~--CgH~FC~~CI~~w~~~ 380 (828)
...||-|.-.+....- ..+... |++.||+.|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4679999888763321 122223 7777777777777543
No 187
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.14 E-value=3.2 Score=38.79 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=30.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
....|.+|...|.--...--+-.||.+||..|..........|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34689999999863333445567999999999765544444566663
No 188
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.42 E-value=12 Score=30.95 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=29.9
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVAL 487 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~ 487 (828)
...|.+|...-.....+.-..|...||..|+..- -.....||.|+....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~---~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPW---LEQHDSCPVCRKSLT 63 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHH---HTTTCSCTTTCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHH---HHcCCcCcCcCCccC
Confidence 4578999664322112222258888999998743 012358999998543
No 189
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=46.11 E-value=4.4 Score=35.95 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=27.9
Q ss_pred CCccccccccccccccccceeccCC---CccChhhHHHH--hhcCCCCCC-ccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCS---HYFCFTCIMEW--SKVESRCPL-CKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg---H~FC~~CI~~w--~~~~~~CP~-CR~ 389 (828)
....| ||...... . ...+..|. .+||+.||.-- ....+.||. |+.
T Consensus 25 ~~~yC-iC~~~~~g-~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG-P-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSS-S-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCC-C-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 45678 99876432 1 12233444 68999998521 124578999 974
No 190
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=45.92 E-value=10 Score=29.05 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=29.1
Q ss_pred ccccccccCCCC-cccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 437 VICSECHQGGDD-GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~~~-~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..|.+|...-.. ........|+..||..|+..- -.....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w---~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMW---LGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT---TTTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHH---HHcCCcCcCCCCE
Confidence 468888764222 222333368889999998753 1224679999874
No 191
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.86 E-value=3.1 Score=33.84 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=27.5
Q ss_pred CCccccccccccccccccceecc--CC-CccChhhHHHHh--hcCCCCCCccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--Cg-H~FC~~CI~~w~--~~~~~CP~CR~ 389 (828)
+...| ||..... + ....... |. ..||+.|+.--. ...+.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34667 9988643 1 1223334 65 699999996211 23567999964
No 192
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=43.92 E-value=15 Score=45.23 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=42.3
Q ss_pred cCCccccccccccccccccceeccCC-CccChhhHHHHhhcCCCCCCccccccc
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCS-HYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~Cg-H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
.....|||-++.+. .||+++.| ++|-+.+|..|+....+||.=|.++..
T Consensus 889 P~~F~cPIs~~lM~----DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMK----DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHh----CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34688999999987 78999887 699999999999888899998887754
No 193
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.60 E-value=6.3 Score=32.56 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=30.3
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+...|.+|...-.....+....|...||..|+..-. .....||.|+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~---~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL---KANRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH---HHCSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH---HcCCcCcCcCCc
Confidence 345789997543222233344588899999987520 112479999875
No 194
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.33 E-value=3.4 Score=33.99 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=27.4
Q ss_pred CCccccccccccccccccceecc--CC-CccChhhHHHHh--hcCCCCCCccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNC--CS-HYFCFTCIMEWS--KVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~--Cg-H~FC~~CI~~w~--~~~~~CP~CR~ 389 (828)
+...| ||..... + ....... |. ..||+.|+.--. ...+.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34667 9988643 1 1122334 44 799999986211 23567999964
No 195
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.27 E-value=12 Score=30.75 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=30.8
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCc
Q 003340 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~C 387 (828)
..|-.|+..|.... .-....|.+.||..|=.--...-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 56999999884221 23467799999999965444555679988
No 196
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.12 E-value=12 Score=34.96 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=24.0
Q ss_pred CccccccccccccccccceeccCCCccChhhHH
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
...|.+|...|.-..-.--+-.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 457999999986332233455699999999963
No 197
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.61 E-value=16 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHH
Q 003340 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
..|.+|...|.--.-.--.-.||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 57999999986332233445699999999953
No 198
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.12 E-value=15 Score=32.29 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHH
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w 377 (828)
...|.+|...|.-....--+-.||++||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 46799999988633233455679999999997543
No 199
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=40.08 E-value=12 Score=33.40 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=31.5
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
...|.+|...-....++ .|+..||..|+... +-.+...||.|+...
T Consensus 15 ~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL---PCNHTLCKPCFQST--VEKASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSCEEC---TTSCEECHHHHCCC--CCTTTSBCTTTCCBC
T ss_pred CCCCccCCcccCceeEc---CCCCHHhHHHHHHH--HhHCcCCCCCCCccc
Confidence 34799998654433233 68888999998754 223467899999853
No 200
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.01 E-value=15 Score=31.48 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=24.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
....|.+|...|.-..-.--+-.||++||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 4568999999986332233455699999999964
No 201
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.97 E-value=7.6 Score=31.61 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=30.8
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|...-... +++ .|+..||..|+........+...||.|+..
T Consensus 20 ~~~C~IC~~~~~~~-~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKP-VTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSE-EEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCe-EEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 45799998754432 222 788889999987531112345689999885
No 202
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=38.59 E-value=18 Score=44.04 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=6.5
Q ss_pred eccCCCccChhhHHHHhhcCCCCCCcccc
Q 003340 362 LNCCSHYFCFTCIMEWSKVESRCPLCKQR 390 (828)
Q Consensus 362 l~~CgH~FC~~CI~~w~~~~~~CP~CR~~ 390 (828)
++.+.+.+...|+..|-.. .||.|+..
T Consensus 173 i~~~~~~~~~~~~~~w~~~--~~~~c~h~ 199 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDGE--VRQVSKHA 199 (854)
T ss_dssp HTC------------------CCCBCTTT
T ss_pred HHhcCCHHHHHHHHhhcCc--cCCCCcCc
Confidence 3447899999999999633 48888643
No 203
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.48 E-value=17 Score=31.38 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
....|.+|...|.-..-.--+-.||++||..|..
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4568999999986332234455699999999964
No 204
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.48 E-value=6.6 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.613 Sum_probs=22.0
Q ss_pred cccccccccccc--cccceeccCCCccChhhHHHH
Q 003340 345 VCGICLSEEDKR--RLRGTLNCCSHYFCFTCIMEW 377 (828)
Q Consensus 345 ~C~ICle~~~~~--~~~~~l~~CgH~FC~~CI~~w 377 (828)
-||-|...+... ....+++.|++.||+.|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 388776654321 112344459999999999888
No 205
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.67 E-value=18 Score=31.20 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=23.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCI 374 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI 374 (828)
....|.+|...|.--.-.--+-.||.+||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 456899999998632223344569999999984
No 206
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=36.12 E-value=4 Score=33.19 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=31.5
Q ss_pred cccccccccCCCCcccccc--cccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLC--DICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llC--d~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|.....+.+++-| .+.-..+|..||..= ..-.+++.|+.|...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W-~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTW-LTISRNTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHH-HHHHTCSBCTTTCCB
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHH-HHhCCCCccCCCCCe
Confidence 4578899765554555664 234458999999842 001246899999874
No 207
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.21 E-value=40 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=27.2
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+...|.+|...-....++ .|+..||..|+.. ....||.|+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEA------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCSCS---TTSCCSBTTTCSS------SSSSCSSCCSS
T ss_pred cCCCceEeCCccCCeEEc---CCCCcccHHHHcc------CCCCCCcCCcE
Confidence 345788997654433333 4777778788653 23579999875
No 208
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=35.13 E-value=7.4 Score=42.90 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=26.9
Q ss_pred CCCCCCCCCC--CCcccCCcccCCCCCCCCCCCcccchhhHHHHHHhhcccccCCCCC
Q 003340 534 LTPGSGNLSS--PRFTVGDVQAASPGSGAGAPTLTGRRWIHRHIQNLLSMNRMNFMSG 589 (828)
Q Consensus 534 ~~~~~~~~~s--~~~ygadih~~s~~s~~gf~t~~~~~~l~~~i~~~~s~~~~~~~~~ 589 (828)
.+..||+.+. +..||||++ || +||.. +++|||++++.
T Consensus 168 lE~~yW~~~~~~~p~YgaD~~----GS--~F~~~-------------~~~WNL~~Lp~ 206 (373)
T 3opt_A 168 LEEYYWKTLNFTTPMYGADTP----GS--IFPEG-------------LNVWNVAKLPN 206 (373)
T ss_dssp HHHHHHHTTTTSCCEEEEEEE----CC--CSCTT-------------CCSSCTTSCC-
T ss_pred HHHHHHHhccCCCceEecCCC----CC--CcCCC-------------CCccChhhhhh
Confidence 3567777653 568999974 56 89862 57999999984
No 209
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.95 E-value=17 Score=37.04 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=24.1
Q ss_pred CccccccccccccccccceeccCCCccChhhHH
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
...|.+|...|.--.-.--+-.||+.||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 358999999886332334556799999999954
No 210
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.82 E-value=8.1 Score=44.12 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=31.9
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh---h--cCCCCCCccccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS---K--VESRCPLCKQRF 391 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~---~--~~~~CP~CR~~~ 391 (828)
....| ||...+........+..|.-.||..|+.--. . ....||.|+...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34567 9988764233333455699999999986221 1 346799997643
No 211
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.84 E-value=24 Score=38.92 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=32.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHH--HHh--hcCCCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM--EWS--KVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~--~w~--~~~~~CP~CR~~~~~ 393 (828)
.+.|||-+..+. .......|.|.-|++-.. ... ...+.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 478998888765 234556699998877632 222 235779999886644
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.65 E-value=5.5 Score=42.91 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=32.9
Q ss_pred CCccccccccccccccccceec----cCC--CccChhhHHHHhhcCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLN----CCS--HYFCFTCIMEWSKVESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~----~Cg--H~FC~~CI~~w~~~~~~CP~CR~~ 390 (828)
....||||...-. ..++. .=| +.+|..|-..|.-....||.|...
T Consensus 181 ~~~~CPvCGs~P~----~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPM----AGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEE----EEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCc----eeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3578999998743 12222 123 678999999998888999999864
No 213
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=33.56 E-value=17 Score=39.84 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=30.5
Q ss_pred cccccccccCCC---Cccccccc--ccccccccccCCC-----C-CCCC--CCCcccCCCCCC
Q 003340 436 NVICSECHQGGD---DGLMLLCD--ICDSSAHTYCVGL-----G-RVVP--EGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~---~~~~llCd--~Cd~~~H~~CL~p-----~-~~vP--~g~W~Cp~C~~~ 485 (828)
...|.+|-..-. .-....|. .|...||..||.. + ...- .---.||.|+.+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 446888865322 22345698 7999999999963 1 0000 011359999874
No 214
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.46 E-value=18 Score=36.55 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=23.8
Q ss_pred CccccccccccccccccceeccCCCccChhhHH
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
...|.+|...|.--.-.--+-.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 368999999986332234455699999998854
No 215
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=33.12 E-value=11 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=29.7
Q ss_pred cccccccccCC-CCcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGG-DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~-~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
...|.+|...- .....+....|+..||..|+..- + .....||.|+...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~--~-~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEM--L-KEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHH--H-HHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHH--H-HcCCcCCCCCCcC
Confidence 45688887642 21223344568889999998742 0 0115799998753
No 216
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=32.46 E-value=19 Score=31.45 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~ 376 (828)
....|.+|...|.--.-.--+-.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34689999999863322334456999999999653
No 217
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.52 E-value=11 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-----cCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-----~~~~CP~CR~~ 390 (828)
....| ||...+........+..|.-.||..|+.--.. ....||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34556 89876542223333456899999999963221 34679999754
No 218
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=31.12 E-value=15 Score=31.17 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=30.2
Q ss_pred cccccccccCCC--CcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~--~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
...|.+|...-. +..++-| .|+..||..|+.-. ...+...||.|+...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~--~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRI--RTDENGLCPACRKPY 60 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHH--TTSSCSBCTTTCCBC
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCHHHHHHH--HhcCCCCCCCCCCcc
Confidence 456888976421 1122223 58888888888643 112568999999853
No 219
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=31.00 E-value=7.6 Score=31.36 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=28.5
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|...-.....+....|+..||..|+..-. .....||.|+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~---~~~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL---ITNKKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHH---HHCSBCTTTCSB
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHH---HcCCCCcCcCcc
Confidence 45788896542211123334588889999987420 012369999875
No 220
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.99 E-value=11 Score=33.36 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=29.9
Q ss_pred ccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
..|.+|...-....+ -.|+..||..|+........+...||.|+...
T Consensus 22 ~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEPVS---TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSCCB---CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCcccChhhcCeEE---CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 478999765433222 26888888888864311112457899998853
No 221
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=30.51 E-value=26 Score=28.70 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=30.3
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC-CC---CCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RV---VPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~---vP~g~W~Cp~C~~~ 485 (828)
...|.+|...-....++ .|+..||..|+.-. .. ...+...||.|+..
T Consensus 12 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred CCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 45799997654332222 58888999998753 11 11235789999985
No 222
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.55 E-value=20 Score=33.92 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCcccccccccccc-ccccceeccCCCccChhhHH
Q 003340 342 AKQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 342 ~~~~C~ICle~~~~-~~~~~~l~~CgH~FC~~CI~ 375 (828)
....|.+|+..|.. .....++..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45789999999842 12234566788999888843
No 223
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.31 E-value=32 Score=29.39 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=28.5
Q ss_pred cccccccccCCC--Ccccccc--cccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGD--DGLMLLC--DICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~--~~~~llC--d~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|..... ..+++-| .++...||..||..=. .-.+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl-~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI-KSSDTRCCELCKYE 67 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHH-HHHCCSBCSSSCCB
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHH-hhCCCCCCCCCCCe
Confidence 457889975422 2223323 2234789999997420 00124689999985
No 224
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=29.02 E-value=7.3 Score=33.71 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=28.9
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|...-.....+..-.|+..||..|+..-. ...-.||.|+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl---~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL---QKSGTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH---TTTCBCTTTCCB
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH---HcCCcCcCcCcc
Confidence 45799997542211122223489999999987530 123489999874
No 225
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.10 E-value=12 Score=41.10 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w 377 (828)
....|.+|...|.-....--+-.||+.||..|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp ------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 346899999988633223455579999999998654
No 226
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=27.77 E-value=8.2 Score=31.66 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=27.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc----CCCCCCccc
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV----ESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~----~~~CP~CR~ 389 (828)
...+|.||+-.=-....--.+.-|.-.||.+|=..|... .+.|-+|++
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 457999999862222223344457777777776555322 233666654
No 227
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=27.57 E-value=35 Score=37.45 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=32.1
Q ss_pred CccccccccccccccccceeccCCCccChhhHH--HHh--hcCCCCCCccccccc
Q 003340 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM--EWS--KVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~--~w~--~~~~~CP~CR~~~~~ 393 (828)
.+.|||-+..+. .......|.|.-|++-.. ... ...+.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 478999888775 234556699998877532 222 235779999886643
No 228
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.87 E-value=10 Score=33.11 Aligned_cols=41 Identities=24% Similarity=0.618 Sum_probs=26.3
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003340 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..||+|...+... =++.+|..|-....... .||.|.+++..
T Consensus 3 ~~CP~C~~~l~~~--------~~~~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN--------GDTAHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC--------SSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCccccC--------CCceECccccccCCCcc-cCcchhhHHHH
Confidence 6799999886421 12555777765443334 79999876643
No 229
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.65 E-value=60 Score=25.74 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=12.0
Q ss_pred CCCCCCcccCCCCCCCCC
Q 003340 471 VVPEGNWYCDGCRPVALG 488 (828)
Q Consensus 471 ~vP~g~W~Cp~C~~~~~g 488 (828)
.+| .+|.||.|......
T Consensus 32 ~lP-~dw~CP~Cg~~K~~ 48 (52)
T 1e8j_A 32 DLP-DDWACPVCGASKDA 48 (52)
T ss_dssp SSC-TTCCCSSSCCCTTS
T ss_pred HCC-CCCcCCCCCCcHHH
Confidence 344 57999999885443
No 230
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=25.78 E-value=46 Score=31.23 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=4.3
Q ss_pred hhHHHHhhcCCCCCCccc
Q 003340 372 TCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 372 ~CI~~w~~~~~~CP~CR~ 389 (828)
.||..|-. ..||.|+.
T Consensus 2 ~~~~~W~~--e~~~~C~h 17 (129)
T 2g45_A 2 QEVQAWDG--EVRQVSKH 17 (129)
T ss_dssp -----------CCEECTT
T ss_pred hHHHhhcC--CCCCCCCC
Confidence 57888853 44777753
No 231
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.70 E-value=29 Score=33.51 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCccccccccccccc-cccceeccCCCccChhhHHHHhh--cCCCCCCcccc
Q 003340 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSK--VESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~CgH~FC~~CI~~w~~--~~~~CP~CR~~ 390 (828)
....|.+|+..|... ....++..|.|.+|..|-. |.. ..+.|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 458899999987422 2245666799999999962 332 23557777653
No 232
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=17 Score=29.68 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=29.5
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVAL 487 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~ 487 (828)
...|.+|...-.....+.-..|...||..|+..-. .....||.|+....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~---~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL---EVRKVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHH---HHCSBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHH---HcCCcCCCcCcccc
Confidence 45788997653222222222588889999987420 01237999998543
No 233
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=21 Score=29.02 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=29.5
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+...|.+|...-....++ .|+..||..|+... + .....||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~--~-~~~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL---PCKHVFCYLCVKGA--S-WLGKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE---TTTEEEEHHHHHHC--T-TCSSBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEc---cCCCHHHHHHHHHH--H-HCCCcCcCcCch
Confidence 345799997654333222 58888999998743 1 123689999884
No 234
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.39 E-value=33 Score=28.77 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=23.7
Q ss_pred CCccccccccccccccccceeccC-CCccChhhHHHH
Q 003340 342 AKQVCGICLSEEDKRRLRGTLNCC-SHYFCFTCIMEW 377 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C-gH~FC~~CI~~w 377 (828)
+..-|.||.+.- ...++.| +-.||..|....
T Consensus 7 e~pWC~ICneDA-----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA-----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC-----CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC-----eEEecCCCCceehHHHHHHH
Confidence 456799999873 2567789 789999997653
No 235
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=25.19 E-value=9 Score=42.39 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=27.3
Q ss_pred CCCCCCCCCCC--CCcccCCcccCCCCCCCCCCCcccchhhHHHHHHhhcccccCCCCC
Q 003340 533 PLTPGSGNLSS--PRFTVGDVQAASPGSGAGAPTLTGRRWIHRHIQNLLSMNRMNFMSG 589 (828)
Q Consensus 533 ~~~~~~~~~~s--~~~ygadih~~s~~s~~gf~t~~~~~~l~~~i~~~~s~~~~~~~~~ 589 (828)
.+++.||+++. .+.||||++++..++ ..++|||++++.
T Consensus 138 ~lE~~fWr~v~~~~~~YgaD~~gS~f~~-------------------~~~~WNL~~Lp~ 177 (381)
T 2ox0_A 138 ELERKYWKNLTFNPPIYGADVNGTLYEK-------------------HVDEWNIGRLRT 177 (381)
T ss_dssp HHHHHHHHHTTSSCCEEEEEEECCCSCT-------------------TCCSSCTTCCCC
T ss_pred HHHHHHHhhCCcCCceeecCCCcccCCC-------------------CCCCCchhhhhh
Confidence 35788898876 457999998544432 147999999874
No 236
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.08 E-value=16 Score=43.15 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=4.7
Q ss_pred cccccccccCC
Q 003340 457 CDSSAHTYCVG 467 (828)
Q Consensus 457 Cd~~~H~~CL~ 467 (828)
|...+..+|..
T Consensus 499 cQA~fYIfCFR 509 (649)
T 3tj1_A 499 FQALCYIFCFR 509 (649)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 237
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.92 E-value=16 Score=30.32 Aligned_cols=47 Identities=26% Similarity=0.467 Sum_probs=30.3
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC-C--CCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-R--VVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~--~vP~g~W~Cp~C~~~ 485 (828)
...|.+|...-....++ .|+..||..|+... . ....+...||.|+..
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 45799998764433222 68888888888642 1 112345789999985
No 238
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=24.72 E-value=31 Score=30.11 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=24.3
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHH
Q 003340 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~ 376 (828)
-+.+.|.||...-.++.+.+....|...||..|...
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 467899999764222333444455889999999754
No 239
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.76 E-value=27 Score=31.42 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=27.7
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003340 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
..||+|...+. +. =++.+|..|-..+ .....||.|.+++..+
T Consensus 33 ~~CP~Cq~eL~------~~--g~~~hC~~C~~~f-~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLD------QD--NGHARCRSCGEFI-EMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEE------EE--TTEEEETTTCCEE-EEEEECTTTCSBCEEE
T ss_pred ccCccCCCcce------ec--CCEEECccccchh-hccccCcchhhHHHHH
Confidence 78999998864 11 1355587785432 3456799998766544
No 240
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.15 E-value=20 Score=36.99 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=32.3
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|.+|..---. -..|..|...||..|+.-- ....+.-.||.|...
T Consensus 180 i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~-~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKY-FQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSS--CEECSSSCCEECHHHHHHH-TTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHhC--CcccCccChHHHHHHHHHH-HHhCCCCCCCCCCCC
Confidence 4579999765332 3569889999999998742 011234579999773
No 241
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.40 E-value=23 Score=25.30 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=9.3
Q ss_pred CCCcccCCCCC
Q 003340 474 EGNWYCDGCRP 484 (828)
Q Consensus 474 ~g~W~Cp~C~~ 484 (828)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999865
No 242
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.37 E-value=29 Score=31.64 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=19.1
Q ss_pred cceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003340 359 RGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 359 ~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
.+.+..||+.|+ .-......||.|+....
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 356777999992 22234567999987553
No 243
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=22.27 E-value=16 Score=34.00 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=28.1
Q ss_pred ccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..|.+|...-....++ .|+..||..|+..- -...-.||.|+..
T Consensus 54 ~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~---~~~~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL---NCAHSFCSYCINEW---MKRKIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSEEEE---TTSCEEEHHHHHHH---TTTCSBCTTTCCB
T ss_pred CCCcccCcccCCceEC---CCCCCccHHHHHHH---HHcCCcCCCCCCc
Confidence 4699997764433332 48888999997632 1123569999875
No 244
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.10 E-value=40 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.819 Sum_probs=12.2
Q ss_pred CCCCCCcccCCCCCCCCC
Q 003340 471 VVPEGNWYCDGCRPVALG 488 (828)
Q Consensus 471 ~vP~g~W~Cp~C~~~~~g 488 (828)
.+| .+|.||.|-.....
T Consensus 56 dlP-ddW~CPvCga~K~~ 72 (81)
T 2kn9_A 56 DIP-DDWSCPDCGAAKSD 72 (81)
T ss_dssp TSC-TTCCCTTTCCCGGG
T ss_pred HCC-CCCcCCCCCCCHHH
Confidence 344 57999999886433
No 245
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=22.03 E-value=13 Score=33.91 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=30.2
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
...|.+|...-....++ .|+..||..|+... +..+...||.|+...
T Consensus 52 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFRPITT---VCQHNVCKDCLDRS--FRAQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSSEEEC---TTSCEEEHHHHHHH--HHTTCCBCTTTCCBC
T ss_pred CCCCCcCChHHcCcEEe---eCCCcccHHHHHHH--HhHCcCCCCCCCccC
Confidence 34799997654433232 68888999998643 112345899999854
No 246
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.13 E-value=23 Score=32.61 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCCCCCcccCCCCCC
Q 003340 455 DICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 455 d~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..|...||..|+..= -...-.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~W---l~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRW---LKTRQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CCcCceEcHHHHHHH---HHcCCcCCCCCCe
Confidence 468999999998752 0113469999874
No 247
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.68 E-value=50 Score=23.64 Aligned_cols=15 Identities=27% Similarity=0.871 Sum_probs=11.2
Q ss_pred CCCCcccCCCCCCCC
Q 003340 473 PEGNWYCDGCRPVAL 487 (828)
Q Consensus 473 P~g~W~Cp~C~~~~~ 487 (828)
..|+|.|+.|-...+
T Consensus 3 ~~gDW~C~~C~~~Nf 17 (33)
T 2k1p_A 3 SANDWQCKTCSNVNW 17 (33)
T ss_dssp SSSSCBCSSSCCBCC
T ss_pred CCCCcccCCCCCccc
Confidence 468999999976433
No 248
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.40 E-value=14 Score=35.27 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=31.3
Q ss_pred cccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCCC
Q 003340 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVA 486 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~ 486 (828)
...|.+|...-.. .+.+..|+..||..|+..- +-.+...||.|+...
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~--~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITA--LRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHH--HHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHH--HHhCcCCCCCCCCcC
Confidence 3579999765432 2334579889999998743 112357899999853
No 249
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.07 E-value=57 Score=27.48 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=12.0
Q ss_pred CCCCCCcccCCCCCCCCC
Q 003340 471 VVPEGNWYCDGCRPVALG 488 (828)
Q Consensus 471 ~vP~g~W~Cp~C~~~~~g 488 (828)
.+| .+|.||.|-.....
T Consensus 36 ~lP-ddw~CP~Cga~K~~ 52 (70)
T 1dx8_A 36 DLS-DSFMCPACRSPKNQ 52 (70)
T ss_dssp GSC-TTCBCTTTCCBGGG
T ss_pred hCC-CCCcCCCCCCCHHH
Confidence 344 57999999885433
Done!