Query 003343
Match_columns 828
No_of_seqs 619 out of 2614
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 3.3E-18 7.2E-23 195.5 2.0 136 343-484 123-265 (1134)
2 KOG4430 Topoisomerase I-bindin 98.9 3.3E-09 7.1E-14 121.4 10.6 356 238-663 166-521 (553)
3 PF13639 zf-RING_2: Ring finge 98.8 1.1E-09 2.5E-14 85.9 1.9 44 344-388 1-44 (44)
4 PHA02929 N1R/p28-like protein; 98.7 7.7E-09 1.7E-13 109.0 4.2 55 342-396 173-231 (238)
5 KOG0317 Predicted E3 ubiquitin 98.7 4.9E-09 1.1E-13 111.2 2.5 49 342-394 238-286 (293)
6 KOG1244 Predicted transcriptio 98.7 3.1E-09 6.8E-14 111.1 -0.7 53 432-484 277-330 (336)
7 PHA02926 zinc finger-like prot 98.6 1.8E-08 4E-13 103.6 3.7 56 342-397 169-235 (242)
8 PF15227 zf-C3HC4_4: zinc fing 98.6 3.1E-08 6.7E-13 77.5 2.7 38 346-387 1-42 (42)
9 PLN03208 E3 ubiquitin-protein 98.5 5.5E-08 1.2E-12 99.0 3.7 48 342-393 17-80 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 98.5 4.8E-08 1E-12 74.9 2.3 38 346-387 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 98.5 5E-08 1.1E-12 78.8 2.4 47 343-393 2-49 (50)
12 PF12678 zf-rbx1: RING-H2 zinc 98.5 6.6E-08 1.4E-12 84.5 3.3 47 342-388 18-73 (73)
13 KOG4443 Putative transcription 98.5 5.7E-08 1.2E-12 112.2 2.9 94 343-485 18-118 (694)
14 KOG0823 Predicted E3 ubiquitin 98.5 6.5E-08 1.4E-12 100.2 2.9 51 340-394 44-97 (230)
15 KOG0320 Predicted E3 ubiquitin 98.4 7.8E-08 1.7E-12 95.9 2.3 49 342-392 130-178 (187)
16 KOG1246 DNA-binding protein ju 98.4 1.7E-07 3.7E-12 116.4 3.2 147 434-597 153-320 (904)
17 smart00504 Ubox Modified RING 98.3 4.2E-07 9E-12 76.1 3.8 45 344-392 2-46 (63)
18 KOG1512 PHD Zn-finger protein 98.3 2.6E-07 5.6E-12 97.5 2.7 52 434-486 312-364 (381)
19 PF00097 zf-C3HC4: Zinc finger 98.3 4.5E-07 9.7E-12 69.9 2.5 38 346-387 1-41 (41)
20 KOG4628 Predicted E3 ubiquitin 98.3 3.9E-07 8.4E-12 100.4 2.5 49 344-393 230-279 (348)
21 cd00162 RING RING-finger (Real 98.2 7.3E-07 1.6E-11 68.3 3.2 43 345-390 1-44 (45)
22 TIGR00599 rad18 DNA repair pro 98.2 6.5E-07 1.4E-11 100.8 3.0 48 342-393 25-72 (397)
23 PF14634 zf-RING_5: zinc-RING 98.2 8.6E-07 1.9E-11 69.8 2.7 44 345-389 1-44 (44)
24 COG5540 RING-finger-containing 98.2 7.6E-07 1.6E-11 94.9 3.2 50 342-392 322-372 (374)
25 KOG0287 Postreplication repair 98.2 4.5E-07 9.8E-12 97.7 1.2 49 342-394 22-70 (442)
26 PF00628 PHD: PHD-finger; Int 98.2 3.9E-07 8.5E-12 73.5 0.2 47 438-484 1-50 (51)
27 KOG0955 PHD finger protein BR1 98.1 1.4E-06 3E-11 107.3 4.1 131 435-572 218-366 (1051)
28 COG5243 HRD1 HRD ubiquitin lig 98.1 2.4E-06 5.3E-11 93.2 4.8 54 340-393 284-346 (491)
29 PF12861 zf-Apc11: Anaphase-pr 98.1 1.9E-06 4.2E-11 77.0 2.8 51 343-393 21-83 (85)
30 smart00184 RING Ring finger. E 98.1 2.4E-06 5.2E-11 63.1 2.8 38 346-387 1-39 (39)
31 KOG2164 Predicted E3 ubiquitin 98.1 1.6E-06 3.5E-11 98.5 2.4 47 343-393 186-237 (513)
32 COG5432 RAD18 RING-finger-cont 98.1 1.5E-06 3.3E-11 92.1 1.9 49 343-395 25-73 (391)
33 COG5574 PEX10 RING-finger-cont 98.1 1.7E-06 3.6E-11 91.3 2.2 48 342-393 214-263 (271)
34 KOG2177 Predicted E3 ubiquitin 98.0 2E-06 4.4E-11 90.1 1.6 45 341-389 11-55 (386)
35 PF13445 zf-RING_UBOX: RING-ty 98.0 3.1E-06 6.8E-11 66.6 2.1 34 346-380 1-34 (43)
36 KOG4299 PHD Zn-finger protein 98.0 2.2E-06 4.7E-11 99.3 1.4 50 436-485 253-305 (613)
37 smart00249 PHD PHD zinc finger 97.9 8.2E-06 1.8E-10 63.4 2.9 45 438-482 1-47 (47)
38 KOG0804 Cytoplasmic Zn-finger 97.9 4.4E-06 9.5E-11 93.4 1.7 46 342-389 174-219 (493)
39 COG5141 PHD zinc finger-contai 97.8 4.3E-06 9.4E-11 93.8 0.9 115 436-558 193-324 (669)
40 KOG1973 Chromatin remodeling p 97.7 1.2E-05 2.6E-10 87.2 1.9 48 435-485 218-268 (274)
41 TIGR00570 cdk7 CDK-activating 97.7 2.1E-05 4.5E-10 85.8 3.5 52 342-394 2-56 (309)
42 PF04564 U-box: U-box domain; 97.7 2E-05 4.4E-10 68.8 2.3 47 343-393 4-51 (73)
43 KOG0802 E3 ubiquitin ligase [P 97.6 1.7E-05 3.7E-10 93.7 1.6 49 341-389 289-338 (543)
44 COG5194 APC11 Component of SCF 97.6 3.4E-05 7.5E-10 67.6 2.9 50 344-393 21-82 (88)
45 cd04718 BAH_plant_2 BAH, or Br 97.6 4E-05 8.6E-10 75.4 3.6 31 460-490 1-32 (148)
46 KOG0954 PHD finger protein [Ge 97.6 1.3E-05 2.9E-10 93.7 0.3 50 435-485 270-321 (893)
47 KOG1493 Anaphase-promoting com 97.6 2.3E-05 4.9E-10 68.2 0.9 52 342-393 19-82 (84)
48 KOG2930 SCF ubiquitin ligase, 97.5 2.4E-05 5.3E-10 71.7 -0.1 51 342-392 45-108 (114)
49 KOG0383 Predicted helicase [Ge 97.4 4.8E-05 1E-09 90.9 1.5 88 365-485 2-94 (696)
50 KOG1039 Predicted E3 ubiquitin 97.4 7.2E-05 1.6E-09 83.1 2.4 54 342-395 160-224 (344)
51 COG5034 TNG2 Chromatin remodel 97.4 6.2E-05 1.3E-09 79.2 1.7 47 435-484 220-269 (271)
52 KOG0978 E3 ubiquitin ligase in 97.3 5.8E-05 1.3E-09 89.7 0.9 48 342-393 642-690 (698)
53 KOG1245 Chromatin remodeling c 97.3 6.3E-05 1.4E-09 96.3 0.2 53 433-485 1105-1158(1404)
54 KOG0311 Predicted E3 ubiquitin 97.2 4.1E-05 9E-10 83.7 -1.9 49 342-393 42-91 (381)
55 KOG4172 Predicted E3 ubiquitin 97.2 7.2E-05 1.6E-09 61.2 -0.3 52 342-397 6-59 (62)
56 KOG4323 Polycomb-like PHD Zn-f 97.2 0.00025 5.5E-09 81.0 3.3 133 342-485 82-224 (464)
57 PF14835 zf-RING_6: zf-RING of 97.2 0.00019 4.1E-09 61.0 1.7 43 343-391 7-50 (65)
58 PF11793 FANCL_C: FANCL C-term 97.1 0.00015 3.3E-09 63.0 0.8 51 343-393 2-67 (70)
59 KOG0956 PHD finger protein AF1 97.1 0.0002 4.4E-09 83.5 1.6 159 437-602 6-208 (900)
60 KOG0824 Predicted E3 ubiquitin 97.1 0.00025 5.4E-09 76.4 1.9 49 343-395 7-56 (324)
61 KOG0957 PHD finger protein [Ge 97.0 0.00089 1.9E-08 75.9 6.2 50 435-484 543-597 (707)
62 KOG2660 Locus-specific chromos 97.0 0.0001 2.2E-09 80.3 -1.2 53 343-398 15-67 (331)
63 KOG0828 Predicted E3 ubiquitin 97.0 0.00024 5.3E-09 80.3 1.3 50 343-392 571-634 (636)
64 COG5219 Uncharacterized conser 97.0 0.00028 6.1E-09 84.6 1.5 52 342-393 1468-1524(1525)
65 smart00744 RINGv The RING-vari 96.9 0.00071 1.5E-08 54.9 2.5 42 345-388 1-49 (49)
66 KOG0827 Predicted E3 ubiquitin 96.6 0.00095 2.1E-08 73.9 2.0 46 343-388 4-52 (465)
67 KOG1244 Predicted transcriptio 96.5 0.00094 2E-08 70.9 0.8 94 436-540 224-329 (336)
68 KOG4159 Predicted E3 ubiquitin 96.5 0.0013 2.7E-08 74.8 1.8 50 341-394 82-131 (398)
69 KOG4265 Predicted E3 ubiquitin 96.4 0.0017 3.7E-08 71.7 2.8 50 341-394 288-338 (349)
70 KOG4367 Predicted Zn-finger pr 96.4 0.00084 1.8E-08 74.9 -0.1 33 342-378 3-35 (699)
71 KOG0825 PHD Zn-finger protein 96.4 0.0027 5.8E-08 75.4 3.9 55 344-398 97-160 (1134)
72 PF14632 SPT6_acidic: Acidic N 96.3 0.00087 1.9E-08 61.2 -0.2 21 88-108 53-73 (92)
73 KOG2879 Predicted E3 ubiquitin 96.2 0.0031 6.8E-08 67.3 2.8 50 342-395 238-290 (298)
74 COG5152 Uncharacterized conser 96.2 0.0017 3.7E-08 66.1 0.8 50 342-395 195-244 (259)
75 KOG4443 Putative transcription 96.2 0.0027 5.8E-08 74.6 2.4 91 436-537 18-113 (694)
76 KOG1813 Predicted E3 ubiquitin 96.1 0.0019 4E-08 69.7 1.0 50 342-395 240-289 (313)
77 KOG1645 RING-finger-containing 96.1 0.0029 6.4E-08 70.6 2.5 51 343-393 4-57 (463)
78 KOG1734 Predicted RING-contain 96.0 0.002 4.4E-08 68.4 0.6 52 342-393 223-282 (328)
79 KOG1814 Predicted E3 ubiquitin 95.9 0.0008 1.7E-08 75.2 -3.0 46 343-389 184-237 (445)
80 KOG0297 TNF receptor-associate 95.6 0.0059 1.3E-07 69.7 1.9 50 342-395 20-70 (391)
81 PF13831 PHD_2: PHD-finger; PD 95.0 0.0027 6E-08 48.3 -2.1 33 450-483 3-36 (36)
82 KOG1952 Transcription factor N 94.8 0.017 3.7E-07 69.7 2.6 56 339-394 187-249 (950)
83 KOG1785 Tyrosine kinase negati 94.8 0.011 2.5E-07 65.7 1.1 47 344-394 370-418 (563)
84 PF11789 zf-Nse: Zinc-finger o 94.7 0.017 3.7E-07 48.4 1.6 42 341-386 9-53 (57)
85 KOG4692 Predicted E3 ubiquitin 94.5 0.019 4.2E-07 63.1 1.9 49 341-393 420-468 (489)
86 KOG3039 Uncharacterized conser 94.4 0.026 5.7E-07 59.5 2.7 52 342-393 220-271 (303)
87 PF04641 Rtf2: Rtf2 RING-finge 94.3 0.029 6.4E-07 60.6 2.9 53 341-394 111-163 (260)
88 KOG1002 Nucleotide excision re 94.2 0.017 3.8E-07 66.2 0.9 49 340-392 533-586 (791)
89 KOG1941 Acetylcholine receptor 94.0 0.018 3.9E-07 64.2 0.5 51 342-392 364-416 (518)
90 PHA02862 5L protein; Provision 93.8 0.04 8.6E-07 54.1 2.5 45 344-393 3-54 (156)
91 PF14570 zf-RING_4: RING/Ubox 93.8 0.045 9.7E-07 44.3 2.3 46 346-391 1-47 (48)
92 PHA03096 p28-like protein; Pro 93.6 0.031 6.7E-07 61.2 1.6 46 344-389 179-231 (284)
93 KOG0383 Predicted helicase [Ge 93.5 0.04 8.7E-07 66.6 2.3 86 456-542 1-94 (696)
94 KOG4445 Uncharacterized conser 93.3 0.023 5E-07 61.5 -0.0 52 342-394 114-188 (368)
95 KOG1512 PHD Zn-finger protein 92.8 0.067 1.5E-06 57.5 2.5 89 436-537 258-357 (381)
96 PF14447 Prok-RING_4: Prokaryo 92.2 0.068 1.5E-06 44.4 1.3 44 344-393 8-51 (55)
97 KOG1428 Inhibitor of type V ad 91.6 0.11 2.4E-06 65.4 2.6 52 342-394 3485-3546(3738)
98 COG5222 Uncharacterized conser 91.4 0.093 2E-06 56.8 1.6 44 343-389 274-318 (427)
99 PF12906 RINGv: RING-variant d 91.3 0.12 2.7E-06 41.5 1.9 40 346-387 1-47 (47)
100 KOG1571 Predicted E3 ubiquitin 91.1 0.096 2.1E-06 58.3 1.4 48 341-395 303-350 (355)
101 KOG4275 Predicted E3 ubiquitin 91.0 0.054 1.2E-06 58.5 -0.7 43 343-393 300-343 (350)
102 PHA02825 LAP/PHD finger-like p 90.5 0.21 4.5E-06 50.1 2.9 48 342-394 7-61 (162)
103 COG5236 Uncharacterized conser 89.6 0.23 5E-06 54.8 2.7 53 340-396 58-112 (493)
104 KOG0826 Predicted E3 ubiquitin 89.5 0.21 4.5E-06 55.1 2.2 45 341-388 298-342 (357)
105 KOG4739 Uncharacterized protei 89.2 0.16 3.5E-06 53.9 1.1 48 344-395 4-51 (233)
106 PF05883 Baculo_RING: Baculovi 89.0 0.15 3.2E-06 49.8 0.6 35 343-378 26-66 (134)
107 PF14812 PBP1_TM: Transmembran 88.4 0.14 3E-06 45.9 0.0 8 1-8 9-16 (81)
108 KOG4185 Predicted E3 ubiquitin 88.2 0.34 7.3E-06 53.0 2.8 49 343-391 3-54 (296)
109 KOG2932 E3 ubiquitin ligase in 87.9 0.19 4.1E-06 54.9 0.6 47 344-395 91-137 (389)
110 PF03854 zf-P11: P-11 zinc fin 87.9 0.19 4E-06 40.6 0.4 44 344-393 3-47 (50)
111 PF15446 zf-PHD-like: PHD/FYVE 87.5 0.24 5.2E-06 50.0 1.0 48 438-485 1-60 (175)
112 KOG3970 Predicted E3 ubiquitin 87.2 0.5 1.1E-05 49.6 3.2 54 338-393 45-106 (299)
113 COG5574 PEX10 RING-finger-cont 87.1 0.28 6E-06 52.7 1.3 138 343-485 95-260 (271)
114 KOG0957 PHD finger protein [Ge 86.9 0.3 6.5E-06 56.2 1.5 50 437-486 120-180 (707)
115 KOG1940 Zn-finger protein [Gen 86.9 0.34 7.4E-06 52.8 1.8 48 342-389 157-204 (276)
116 KOG3268 Predicted E3 ubiquitin 86.8 0.39 8.5E-06 48.7 2.1 50 343-392 165-228 (234)
117 KOG3053 Uncharacterized conser 86.6 0.3 6.6E-06 52.2 1.2 55 341-395 18-85 (293)
118 PF10367 Vps39_2: Vacuolar sor 86.5 0.31 6.6E-06 44.8 1.1 32 342-375 77-108 (109)
119 KOG1999 RNA polymerase II tran 86.4 0.42 9.2E-06 59.0 2.5 9 233-241 145-153 (1024)
120 PF04147 Nop14: Nop14-like fam 86.2 0.56 1.2E-05 58.8 3.5 8 575-582 686-693 (840)
121 COG5175 MOT2 Transcriptional r 86.1 0.41 8.9E-06 52.8 2.0 53 342-394 13-66 (480)
122 PF07800 DUF1644: Protein of u 84.6 0.74 1.6E-05 46.2 2.8 33 343-379 2-47 (162)
123 KOG1001 Helicase-like transcri 84.4 0.43 9.3E-06 58.2 1.3 45 344-393 455-501 (674)
124 KOG1473 Nucleosome remodeling 83.8 0.53 1.1E-05 58.9 1.7 45 437-484 345-390 (1414)
125 PF05290 Baculo_IE-1: Baculovi 83.6 0.72 1.6E-05 45.0 2.2 56 340-395 77-135 (140)
126 KOG1473 Nucleosome remodeling 83.3 0.31 6.7E-06 60.8 -0.5 131 340-487 341-481 (1414)
127 KOG0956 PHD finger protein AF1 83.2 1.1 2.4E-05 53.7 3.8 119 362-484 43-179 (900)
128 KOG0298 DEAD box-containing he 82.2 0.41 8.9E-06 60.7 -0.0 45 342-389 1152-1196(1394)
129 KOG2114 Vacuolar assembly/sort 81.7 0.67 1.4E-05 56.7 1.4 43 343-391 840-882 (933)
130 KOG3002 Zn finger protein [Gen 81.2 0.87 1.9E-05 50.4 2.0 45 342-394 47-93 (299)
131 PF08746 zf-RING-like: RING-li 80.9 1.3 2.8E-05 35.1 2.3 41 346-387 1-43 (43)
132 KOG2034 Vacuolar sorting prote 79.5 1 2.2E-05 55.5 1.9 34 342-377 816-849 (911)
133 KOG2807 RNA polymerase II tran 79.3 0.52 1.1E-05 52.0 -0.5 45 437-484 331-375 (378)
134 KOG3161 Predicted E3 ubiquitin 77.9 0.78 1.7E-05 54.5 0.3 42 344-388 12-53 (861)
135 cd04718 BAH_plant_2 BAH, or Br 77.4 1.9 4.2E-05 43.0 2.9 27 516-543 2-28 (148)
136 PF14632 SPT6_acidic: Acidic N 76.9 1.1 2.5E-05 41.2 1.0 14 95-108 55-68 (92)
137 KOG1999 RNA polymerase II tran 76.5 1.9 4.2E-05 53.6 3.1 9 477-485 623-631 (1024)
138 PF14569 zf-UDP: Zinc-binding 76.4 2.3 5E-05 37.9 2.7 54 341-394 7-64 (80)
139 KOG1701 Focal adhesion adaptor 74.5 0.81 1.8E-05 52.2 -0.7 34 342-378 301-334 (468)
140 PF15446 zf-PHD-like: PHD/FYVE 73.6 3.5 7.7E-05 41.9 3.6 22 448-469 121-142 (175)
141 KOG3800 Predicted E3 ubiquitin 73.4 2.4 5.2E-05 46.4 2.5 47 345-391 2-50 (300)
142 KOG1812 Predicted E3 ubiquitin 72.6 1.7 3.7E-05 49.8 1.3 52 341-393 144-204 (384)
143 PF00628 PHD: PHD-finger; Int 72.5 1.1 2.4E-05 35.9 -0.2 44 345-389 1-50 (51)
144 KOG4362 Transcriptional regula 71.7 1.1 2.4E-05 54.1 -0.4 45 343-391 21-68 (684)
145 PF14446 Prok-RING_1: Prokaryo 69.9 2.3 5E-05 35.4 1.2 34 435-468 4-38 (54)
146 KOG2393 Transcription initiati 69.3 13 0.00028 44.0 7.3 8 234-241 340-347 (555)
147 PLN03237 DNA topoisomerase 2; 69.2 5.8 0.00013 52.1 5.0 14 266-279 1448-1461(1465)
148 PF02724 CDC45: CDC45-like pro 68.8 2.3 5.1E-05 51.7 1.4 10 531-540 445-454 (622)
149 KOG3579 Predicted E3 ubiquitin 68.3 2.3 5E-05 46.3 1.0 38 343-380 268-305 (352)
150 KOG4718 Non-SMC (structural ma 68.0 2.8 6E-05 44.0 1.5 49 343-394 181-229 (235)
151 KOG0943 Predicted ubiquitin-pr 65.4 3.6 7.8E-05 52.0 2.0 32 796-828 2751-2786(3015)
152 COG5183 SSM4 Protein involved 64.0 3.8 8.2E-05 50.1 1.8 50 342-393 11-67 (1175)
153 COG5220 TFB3 Cdk activating ki 62.6 2.1 4.6E-05 45.5 -0.5 53 340-392 7-64 (314)
154 PLN02189 cellulose synthase 60.0 6.3 0.00014 50.0 2.8 54 341-394 32-89 (1040)
155 PF02724 CDC45: CDC45-like pro 59.9 5.2 0.00011 48.7 2.1 6 387-392 353-358 (622)
156 KOG1100 Predicted E3 ubiquitin 59.7 4.5 9.7E-05 42.6 1.3 39 346-392 161-200 (207)
157 PLN02638 cellulose synthase A 58.2 7.4 0.00016 49.6 3.0 54 341-394 15-72 (1079)
158 PLN02436 cellulose synthase A 57.0 7.7 0.00017 49.4 2.9 53 342-394 35-91 (1094)
159 KOG4299 PHD Zn-finger protein 57.0 6.3 0.00014 47.2 2.0 46 436-484 47-94 (613)
160 PF14446 Prok-RING_1: Prokaryo 55.6 7.8 0.00017 32.4 1.8 45 343-391 5-51 (54)
161 PF08236 SRI: SRI (Set2 Rpb1 i 55.2 13 0.00027 34.0 3.2 37 725-763 11-47 (88)
162 PRK14559 putative protein seri 55.1 10 0.00022 46.5 3.4 47 437-484 2-49 (645)
163 KOG0827 Predicted E3 ubiquitin 54.2 1.5 3.3E-05 49.4 -3.3 51 344-394 197-247 (465)
164 PF07649 C1_3: C1-like domain; 54.0 3.9 8.5E-05 29.6 -0.2 28 438-465 2-29 (30)
165 KOG1812 Predicted E3 ubiquitin 53.9 6.4 0.00014 45.2 1.4 46 341-387 304-351 (384)
166 KOG0943 Predicted ubiquitin-pr 53.8 7.2 0.00016 49.6 1.8 6 560-565 2417-2422(3015)
167 KOG1609 Protein involved in mR 53.7 6.1 0.00013 43.1 1.1 52 343-394 78-136 (323)
168 PLN02400 cellulose synthase 53.5 8.3 0.00018 49.2 2.4 54 341-394 34-91 (1085)
169 KOG0955 PHD finger protein BR1 53.2 6.7 0.00015 50.1 1.5 49 341-389 217-268 (1051)
170 PF12861 zf-Apc11: Anaphase-pr 52.9 4.7 0.0001 36.7 0.1 47 438-485 34-80 (85)
171 PF10272 Tmpp129: Putative tra 52.5 7.6 0.00016 44.1 1.7 28 367-394 313-353 (358)
172 KOG2068 MOT2 transcription fac 52.3 9.3 0.0002 42.7 2.3 49 344-392 250-298 (327)
173 KOG2231 Predicted E3 ubiquitin 51.9 11 0.00024 46.0 2.9 48 342-394 77-127 (669)
174 PF10497 zf-4CXXC_R1: Zinc-fin 51.8 6.1 0.00013 37.3 0.7 48 436-484 7-69 (105)
175 smart00249 PHD PHD zinc finger 51.7 8.1 0.00017 29.3 1.2 31 345-376 1-31 (47)
176 PF04216 FdhE: Protein involve 51.0 4.6 0.0001 44.4 -0.3 44 343-390 172-220 (290)
177 PF07975 C1_4: TFIIH C1-like d 49.1 11 0.00024 31.2 1.7 43 346-388 2-50 (51)
178 PF02891 zf-MIZ: MIZ/SP-RING z 47.4 14 0.0003 30.2 2.0 43 344-390 3-50 (50)
179 KOG4323 Polycomb-like PHD Zn-f 47.1 18 0.0004 42.3 3.7 104 435-541 82-223 (464)
180 KOG3113 Uncharacterized conser 47.0 13 0.00028 40.2 2.2 50 343-394 111-160 (293)
181 PLN02195 cellulose synthase A 46.2 16 0.00035 46.3 3.3 51 342-392 5-59 (977)
182 KOG0066 eIF2-interacting prote 46.1 4.6 9.9E-05 46.8 -1.3 19 761-779 713-731 (807)
183 PLN02915 cellulose synthase A 45.5 15 0.00032 46.9 2.8 53 341-393 13-69 (1044)
184 KOG0309 Conserved WD40 repeat- 45.2 12 0.00026 45.7 1.9 41 344-386 1029-1069(1081)
185 KOG0269 WD40 repeat-containing 45.1 16 0.00035 44.8 2.9 49 343-393 779-829 (839)
186 PF14569 zf-UDP: Zinc-binding 44.1 4.6 9.9E-05 36.1 -1.3 49 435-485 8-60 (80)
187 PF07191 zinc-ribbons_6: zinc- 44.1 5.8 0.00013 34.8 -0.7 42 344-394 2-43 (70)
188 PF11793 FANCL_C: FANCL C-term 43.3 14 0.0003 32.2 1.5 48 438-485 4-64 (70)
189 KOG2231 Predicted E3 ubiquitin 43.1 12 0.00026 45.6 1.5 47 345-395 2-55 (669)
190 KOG2817 Predicted E3 ubiquitin 41.6 19 0.00041 41.2 2.6 44 344-388 335-381 (394)
191 KOG0393 Ras-related small GTPa 41.6 16 0.00036 38.2 2.0 61 670-737 49-109 (198)
192 KOG1815 Predicted E3 ubiquitin 40.4 14 0.0003 43.2 1.5 37 341-380 68-104 (444)
193 TIGR01562 FdhE formate dehydro 39.9 11 0.00023 42.1 0.4 47 343-389 184-232 (305)
194 PF13922 PHD_3: PHD domain of 39.7 7.3 0.00016 33.7 -0.7 27 450-483 42-68 (69)
195 KOG3899 Uncharacterized conser 38.5 15 0.00033 40.3 1.2 30 365-394 325-367 (381)
196 KOG3612 PHD Zn-finger protein 38.0 28 0.0006 41.4 3.3 48 435-485 59-108 (588)
197 KOG0801 Predicted E3 ubiquitin 37.7 10 0.00022 38.3 -0.2 29 342-371 176-204 (205)
198 PLN03237 DNA topoisomerase 2; 37.3 22 0.00048 47.1 2.6 14 232-245 1312-1325(1465)
199 TIGR00622 ssl1 transcription f 37.3 27 0.00059 33.5 2.5 46 343-388 55-110 (112)
200 PF07800 DUF1644: Protein of u 36.9 13 0.00028 37.6 0.4 32 436-467 2-43 (162)
201 PF10497 zf-4CXXC_R1: Zinc-fin 36.9 27 0.00059 32.9 2.5 24 366-389 37-69 (105)
202 PRK03564 formate dehydrogenase 36.8 14 0.00031 41.2 0.8 48 342-389 186-234 (309)
203 KOG1829 Uncharacterized conser 36.2 12 0.00026 45.0 0.1 42 343-388 511-557 (580)
204 COG5151 SSL1 RNA polymerase II 36.0 5.7 0.00012 43.8 -2.4 32 451-485 388-419 (421)
205 KOG1632 Uncharacterized PHD Zn 34.5 23 0.00051 40.1 2.0 38 450-487 74-115 (345)
206 KOG1493 Anaphase-promoting com 34.5 8.5 0.00018 34.3 -1.1 47 438-485 33-79 (84)
207 KOG3039 Uncharacterized conser 34.1 24 0.00051 38.1 1.8 34 341-378 41-74 (303)
208 PF01363 FYVE: FYVE zinc finge 34.0 17 0.00037 31.0 0.6 34 342-375 8-41 (69)
209 KOG3726 Uncharacterized conser 34.0 20 0.00044 43.6 1.4 44 343-389 654-697 (717)
210 cd00065 FYVE FYVE domain; Zinc 33.3 28 0.0006 28.4 1.7 33 344-376 3-35 (57)
211 COG1773 Rubredoxin [Energy pro 33.2 30 0.00065 29.1 1.9 19 470-489 31-49 (55)
212 PF13901 DUF4206: Domain of un 32.2 30 0.00066 36.2 2.2 40 437-484 153-197 (202)
213 smart00647 IBR In Between Ring 32.1 17 0.00036 30.0 0.2 36 343-378 18-59 (64)
214 KOG0824 Predicted E3 ubiquitin 32.1 21 0.00045 39.6 1.0 48 342-393 104-152 (324)
215 KOG0299 U3 snoRNP-associated p 31.7 57 0.0012 38.1 4.4 24 535-558 378-401 (479)
216 KOG1815 Predicted E3 ubiquitin 31.5 30 0.00065 40.5 2.3 29 359-388 178-206 (444)
217 KOG3896 Dynactin, subunit p62 30.6 2.3E+02 0.0049 32.2 8.5 27 653-679 232-258 (449)
218 PLN02400 cellulose synthase 29.9 33 0.00072 44.1 2.4 50 434-485 34-87 (1085)
219 PF10083 DUF2321: Uncharacteri 29.4 31 0.00068 34.8 1.7 26 366-394 27-52 (158)
220 PLN02638 cellulose synthase A 29.3 30 0.00064 44.5 1.8 49 435-485 16-68 (1079)
221 PF07255 Benyvirus_14KDa: Beny 29.2 25 0.00054 33.0 0.8 26 783-808 83-113 (123)
222 smart00064 FYVE Protein presen 29.1 37 0.0008 28.8 1.9 35 343-377 10-44 (68)
223 KOG3118 Disrupter of silencing 28.8 54 0.0012 38.5 3.6 9 1-9 1-9 (517)
224 PLN02436 cellulose synthase A 28.8 33 0.00072 44.0 2.1 51 433-485 33-87 (1094)
225 KOG2773 Apoptosis antagonizing 28.8 41 0.00089 39.2 2.7 8 372-379 302-309 (483)
226 KOG1973 Chromatin remodeling p 28.3 17 0.00038 39.8 -0.3 29 363-391 238-269 (274)
227 KOG2807 RNA polymerase II tran 28.3 38 0.00082 38.0 2.2 45 343-388 330-374 (378)
228 PRK04023 DNA polymerase II lar 28.2 34 0.00073 43.6 2.0 49 340-394 623-676 (1121)
229 KOG1844 PHD Zn-finger proteins 27.9 34 0.00073 40.4 1.9 51 437-488 87-138 (508)
230 PF10571 UPF0547: Uncharacteri 27.4 24 0.00051 25.2 0.3 15 377-391 10-24 (26)
231 PLN02189 cellulose synthase 26.8 37 0.0008 43.5 2.0 50 434-485 32-85 (1040)
232 KOG3799 Rab3 effector RIM1 and 26.7 15 0.00032 36.1 -1.1 11 342-352 64-74 (169)
233 KOG1080 Histone H3 (Lys4) meth 26.4 1.2E+02 0.0026 39.3 6.3 50 435-484 572-623 (1005)
234 KOG3506 40S ribosomal protein 26.1 23 0.0005 29.7 0.1 29 783-811 18-50 (56)
235 PF03153 TFIIA: Transcription 26.0 23 0.00049 40.3 0.1 6 108-113 339-344 (375)
236 KOG4185 Predicted E3 ubiquitin 25.5 16 0.00034 40.0 -1.3 49 342-390 206-265 (296)
237 KOG2066 Vacuolar assembly/sort 25.1 30 0.00065 42.8 0.8 43 344-387 785-830 (846)
238 PF08729 HUN: HPC2 and ubinucl 24.8 34 0.00074 28.5 0.9 18 228-245 12-29 (55)
239 KOG0954 PHD finger protein [Ge 24.8 39 0.00085 41.5 1.7 29 437-467 381-411 (893)
240 KOG3005 GIY-YIG type nuclease 24.6 35 0.00075 37.3 1.1 49 344-392 183-243 (276)
241 COG5141 PHD zinc finger-contai 24.4 26 0.00057 41.0 0.1 30 436-467 303-334 (669)
242 TIGR00228 ruvC crossover junct 24.4 67 0.0014 32.6 3.0 43 722-774 114-156 (156)
243 PF08362 TetR_C_3: YcdC-like p 24.2 54 0.0012 32.6 2.3 33 735-767 111-143 (143)
244 PF13901 DUF4206: Domain of un 23.8 53 0.0012 34.4 2.3 42 342-389 151-197 (202)
245 KOG2113 Predicted RNA binding 23.8 54 0.0012 36.6 2.3 45 343-393 343-388 (394)
246 KOG2076 RNA polymerase III tra 23.5 52 0.0011 41.3 2.4 9 746-754 820-828 (895)
247 PF05502 Dynactin_p62: Dynacti 23.3 38 0.00082 40.2 1.2 30 451-484 5-34 (483)
248 PF06844 DUF1244: Protein of u 23.1 42 0.0009 29.3 1.1 12 368-379 11-22 (68)
249 PF01485 IBR: IBR domain; Int 22.9 23 0.0005 29.1 -0.5 35 344-378 19-59 (64)
250 smart00132 LIM Zinc-binding do 22.8 52 0.0011 23.9 1.5 37 345-391 1-37 (39)
251 KOG2141 Protein involved in hi 22.6 46 0.001 40.9 1.7 18 745-762 705-722 (822)
252 PLN02915 cellulose synthase A 22.5 50 0.0011 42.4 2.0 49 435-485 14-66 (1044)
253 KOG2141 Protein involved in hi 21.7 29 0.00062 42.6 -0.2 15 675-689 691-705 (822)
254 TIGR00570 cdk7 CDK-activating 21.6 42 0.0009 37.6 1.0 47 437-485 4-52 (309)
255 PF13240 zinc_ribbon_2: zinc-r 21.5 24 0.00052 24.3 -0.5 9 381-389 13-21 (23)
256 KOG4218 Nuclear hormone recept 21.4 32 0.00069 38.7 0.1 47 342-389 14-75 (475)
257 PF09986 DUF2225: Uncharacteri 21.2 42 0.00091 35.5 0.9 16 380-395 4-19 (214)
258 KOG3849 GDP-fucose protein O-f 21.1 99 0.0021 34.1 3.6 79 723-809 282-361 (386)
259 PF13771 zf-HC5HC2H: PHD-like 20.6 72 0.0016 28.4 2.2 37 339-376 32-68 (90)
260 KOG2897 DNA-binding protein YL 20.6 59 0.0013 37.2 1.9 6 462-467 276-281 (390)
261 PF02318 FYVE_2: FYVE-type zin 20.5 58 0.0012 31.1 1.6 48 342-389 53-102 (118)
262 TIGR00595 priA primosomal prot 20.0 66 0.0014 38.3 2.3 39 437-485 214-262 (505)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.70 E-value=3.3e-18 Score=195.55 Aligned_cols=136 Identities=26% Similarity=0.625 Sum_probs=97.3
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccccCCCCcccccccceeecccc--ccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPE--RDQVY 420 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvpe--rdq~~ 420 (828)
...|+||+..|. .+++..-..|+|+||..||..|.+...+||+||..|..+.+..-... ..+|.-+|. ..+..
T Consensus 123 ~~~CP~Ci~s~~-DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~----~~~vR~lP~EEs~~~~ 197 (1134)
T KOG0825|consen 123 ENQCPNCLKSCN-DQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTGI----EANVRCLPSEESENIL 197 (1134)
T ss_pred hhhhhHHHHHHH-HHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeeccccc----cceeEecchhhhhhhh
Confidence 367999999985 34555566799999999999999999999999999988765432221 112222221 11100
Q ss_pred CC--c-hhhhhcccCCCCcccccccccCCCCcccccccccccc-cccccCCCC-CCCCCCCcccCCCCC
Q 003343 421 QP--S-EEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSS-AHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 421 ~~--s-eEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~-~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
.. . ..+. ...-.-+...|.+|..++.+++||+|+.|+.+ ||+|||+|+ .++|.+.|||++|.-
T Consensus 198 e~~~d~~~d~-~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 198 EKGGDEKQDQ-ISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred hhcccccccc-ccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 00 0 0000 00112256789999999999999999999999 999999998 789999999999964
No 2
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=98.93 E-value=3.3e-09 Score=121.35 Aligned_cols=356 Identities=32% Similarity=0.418 Sum_probs=224.1
Q ss_pred cccccccccccCCCcccccccCcccccCCCCCcCCCCCCCccccccHHHHHHHHhhhhhcccccccccCCCCCCcccccc
Q 003343 238 INFIDEGVVVKGKSKTTLSRKRRRYVVPSDSDFVSSGSSDYEYTISEEEREQVREASQLCGKVKTSLRNSSSSKTIQEDG 317 (828)
Q Consensus 238 dDfi~dd~~~~~kkkkkk~~krrr~~v~sdsd~~~s~ssdyEe~~seEEee~~~e~~~~~g~~kr~l~sss~~~~~~e~~ 317 (828)
..+........-+.+.+......++.|..++... .+..++|+.... +..+.+... + . ......+.........
T Consensus 166 ~le~~~~~~~~~~a~~~~d~pgp~v~V~~~~ll~-t~~sdeef~~~~-~i~Q~r~vg-t---~-s~~~~~s~~~~a~v~~ 238 (553)
T KOG4430|consen 166 FLENDLCLAARLKAETSSDRPGPRVHVPSDSLLQ-TGESDEEFTISI-EIKQIRNVG-T---K-SSRNNLSSIVQATVVK 238 (553)
T ss_pred cccccchhhhhhccccCcCCCCCcceecchhhhc-ccccchhhcchh-hhhhhhhcc-c---h-hHHhhhhhhhcccccc
Confidence 3444444455555555555545466776666666 666676766553 333322221 1 0 0011111111111111
Q ss_pred cCCCCcccccccchhhhHhhhcccCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccccC
Q 003343 318 NLGQPRKTLGRKGKEKIEEVKSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKP 397 (828)
Q Consensus 318 dl~~~~~~~~~~~~e~~~~~~~e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~ 397 (828)
.+.....+. ........+......|.+|+.........+..-.|.+.+|+.|++.|......|+.|.+.+..+...
T Consensus 239 ~~~~sp~~~----~~s~~~~deq~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 239 KAPVSPVKK----PHSKRELDEQENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKE 314 (553)
T ss_pred ccccCccCc----ccchhhhhhhhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccccc
Confidence 111111111 1111122234567899999998765555666777889999999999999999999999999888766
Q ss_pred CCCcccccccceeecccccccccCCchhhhhcccCCCCcccccccccCCCCcccccccccccccccccCCCCCCCCCCCc
Q 003343 398 ERSTAGVDLRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNW 477 (828)
Q Consensus 398 ~~~~~gv~l~~~viqvperdq~~~~seEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W 477 (828)
.+. | +.++.+++..+.+.++.+.+ .++++....|..|........+ +-|.+|+.....++.+
T Consensus 315 ~r~--G----~~~~~~~~~~~~~~~t~~r~--~~r~~r~~~~s~~r~~s~~~~s--------~s~s~~~~lg~~~~rs-- 376 (553)
T KOG4430|consen 315 ARQ--G----EHVIPVPKNDQLVKPTTERL--RLRPQRSIRSSECRQSSWDARS--------SSPSYCSELGFEVSRS-- 376 (553)
T ss_pred ccc--C----Cccccccccchhhhccchhh--hcchhhhccccccccccccccc--------cCcccchhhccccccc--
Confidence 554 3 55688888888888877665 7888889999999998875544 6799999987667777
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCC
Q 003343 478 YCDGCRPVALGSSSSQAQDPLPDLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAASPG 557 (828)
Q Consensus 478 ~Cp~C~~~~~g~~~~q~~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~~~ygadih~~s~~ 557 (828)
+|..|.....|....+.+.... . .++..-+.+|.+-+-.+..++.+++.+|+..+. -.+.+++-.+.+..+-++
T Consensus 377 ~~~~~~~~~~~~~~~~k~~~~~-~-~~n~~r~~rpS~~~~s~~~~~~~~~~~~~p~~~---~~~~s~rq~~r~~~~~s~- 450 (553)
T KOG4430|consen 377 SCEGCSPVANGSAEPQKHKISE-R-QANSGRYGRPSSGVVSGQKRDVSSIASPRPEFF---SQSFSPRQPNRRANSPSP- 450 (553)
T ss_pred cccccchhhcCCCCCccchhhh-c-cccCCcccCCCcccccceeecccCcCCCCCcch---hhcccccCCCcccCCCCc-
Confidence 9999988755544444333211 1 124566788887777777788778888776554 355666766766666665
Q ss_pred CCCCCCCcccchhhHHHHHHhhcccccCCCCCCCCCCCCcCCCCCCcccccccCccccCCCCCcccCCCCcccccccccC
Q 003343 558 SGAGAPTLTGRRWIHRHIQNLLSMNRMNFMSGNNDGMPTANLNSENFNSQLDQGRETVVQPARGQETEPLHQAIFEERSH 637 (828)
Q Consensus 558 s~~gf~t~~~~~~l~~~i~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (828)
|+-|+.+.++|++||++-+++.| +.+.+.-. ....++. +..+++..+++|-
T Consensus 451 ---~~~~~~r~~s~~~~~~~~~~~~r-------~~~~t~~~----~~t~~~~---------------~~h~~~~~s~~~~ 501 (553)
T KOG4430|consen 451 ---GATTLSRSRSLQRNIQNTISGDR-------RGRATRHG----EVTTEIG---------------DIHLYAISSERLG 501 (553)
T ss_pred ---cccccccccccccchhccccccc-------ccceeecc----eeeeeec---------------ceeeeeccchhcC
Confidence 67789999999999999999965 22211111 1112222 6677888889993
Q ss_pred CCCccccccCCCcchhhhhhhhcccc
Q 003343 638 DHPTSLVENGDFLAPRLNYLRRQAVQ 663 (828)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (828)
+.+ ...+|++++....|...
T Consensus 502 N~~------~~r~s~~~s~~~~~~~~ 521 (553)
T KOG4430|consen 502 NNN------DERLSPKLSEHGSEEAK 521 (553)
T ss_pred CCc------hhhcCcccccccchhhh
Confidence 333 24566777776666443
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.84 E-value=1.1e-09 Score=85.90 Aligned_cols=44 Identities=36% Similarity=0.837 Sum_probs=36.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
..|+||++.|.... ..+.++|+|.||..||..|++...+||+||
T Consensus 1 d~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGE-KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTS-CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCC-eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999996433 455666999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.72 E-value=7.7e-09 Score=109.02 Aligned_cols=55 Identities=33% Similarity=0.887 Sum_probs=45.4
Q ss_pred CCcccccccccccccc----ccceeccCCCccChhhHHHHhhcCCCCCCcccccccccc
Q 003343 342 AKQVCGICLSEEDKRR----LRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITK 396 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~----~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~ 396 (828)
....|+||++.+.... ..+++++|+|.||..||..|+....+||+||..+..+.+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 4578999999875332 135778899999999999999999999999999877653
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.9e-09 Score=111.21 Aligned_cols=49 Identities=35% Similarity=1.069 Sum_probs=44.2
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
....|.|||+... .|.+++|||.||+.||..|......||+||..++..
T Consensus 238 a~~kC~LCLe~~~----~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRS----NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCC----CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 4588999999976 689999999999999999999999999999988654
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.67 E-value=3.1e-09 Score=111.12 Aligned_cols=53 Identities=36% Similarity=0.771 Sum_probs=48.4
Q ss_pred CCCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003343 432 DPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 432 d~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
+.+++..|.+|+..+++..+||||.|+++||+|||.|| .+.|+|.|.|.-|..
T Consensus 277 qcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 277 QCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 34577899999999999999999999999999999999 889999999999965
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=98.63 E-value=1.8e-08 Score=103.58 Aligned_cols=56 Identities=39% Similarity=0.982 Sum_probs=44.3
Q ss_pred CCcccccccccccc-----ccccceeccCCCccChhhHHHHhhcC------CCCCCccccccccccC
Q 003343 342 AKQVCGICLSEEDK-----RRLRGTLNCCSHYFCFTCIMEWSKVE------SRCPLCKQRFKTITKP 397 (828)
Q Consensus 342 ~~~~C~ICle~~~~-----~~~~~~l~~CgH~FC~~CI~~w~~~~------~~CP~CR~~~~~i~~~ 397 (828)
.+..|+|||+.... ....+++.+|+|.||..||..|.... ..||+||..|..+.+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 45899999998532 12357899999999999999999742 4599999999877643
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.57 E-value=3.1e-08 Score=77.49 Aligned_cols=38 Identities=34% Similarity=0.708 Sum_probs=29.5
Q ss_pred ccccccccccccccceeccCCCccChhhHHHHhhcC----CCCCCc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE----SRCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~----~~CP~C 387 (828)
|+||++.|. .|+.+.|||.||..||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999998 78999999999999999887543 469998
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.52 E-value=5.5e-08 Score=99.04 Aligned_cols=48 Identities=31% Similarity=0.924 Sum_probs=40.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc----------------CCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV----------------ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~----------------~~~CP~CR~~~~~ 393 (828)
+...|+||++.+. .++++.|||.||+.||..|+.. ...||+||..+..
T Consensus 17 ~~~~CpICld~~~----dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR----DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC----CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4589999999986 6788999999999999999742 2469999988754
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.51 E-value=4.8e-08 Score=74.89 Aligned_cols=38 Identities=37% Similarity=0.976 Sum_probs=32.6
Q ss_pred ccccccccccccccc-eeccCCCccChhhHHHHhhcCCCCCCc
Q 003343 346 CGICLSEEDKRRLRG-TLNCCSHYFCFTCIMEWSKVESRCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~-~l~~CgH~FC~~CI~~w~~~~~~CP~C 387 (828)
|+||++.+. .+ ++++|||.||..||..|++....||+|
T Consensus 1 C~iC~~~~~----~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR----DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S----SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc----CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999986 46 688999999999999999888889998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.51 E-value=5e-08 Score=78.77 Aligned_cols=47 Identities=30% Similarity=0.764 Sum_probs=39.7
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
+..|.||++... ..++.+|||. ||..|+..|......||+||+++..
T Consensus 2 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR----DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC----ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 368999999865 5788899999 9999999999988999999988754
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.51 E-value=6.6e-08 Score=84.46 Aligned_cols=47 Identities=34% Similarity=0.810 Sum_probs=36.3
Q ss_pred CCccccccccccccc---------cccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 342 AKQVCGICLSEEDKR---------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 342 ~~~~C~ICle~~~~~---------~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
....|+||++.|... ....++..|+|.||..||..|++...+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345699999998321 12335567999999999999999999999997
No 13
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.48 E-value=5.7e-08 Score=112.20 Aligned_cols=94 Identities=32% Similarity=0.761 Sum_probs=74.4
Q ss_pred Cccccccccccccc-cccceeccCCCccChhhHHHHhhcC-----CCCCCccccccccccCCCCcccccccceeeccccc
Q 003343 343 KQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSKVE-----SRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPER 416 (828)
Q Consensus 343 ~~~C~ICle~~~~~-~~~~~l~~CgH~FC~~CI~~w~~~~-----~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvper 416 (828)
...|+||-...... .....+-.|+-.||..|+..|+... +.||-|+
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr---------------------------- 69 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR---------------------------- 69 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce----------------------------
Confidence 46788886654321 1133455689999999999997632 5577774
Q ss_pred ccccCCchhhhhcccCCCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003343 417 DQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 417 dq~~~~seEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
+|..|+..++....++|+.|+.+||.||+.|+ ..||.|.|+|+.|...
T Consensus 70 ---------------------vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 70 ---------------------VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred ---------------------eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhh
Confidence 67889988888899999999999999999999 8999999999998653
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.5e-08 Score=100.19 Aligned_cols=51 Identities=27% Similarity=0.795 Sum_probs=42.7
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHHHhhcC---CCCCCcccccccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQRFKTI 394 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~---~~CP~CR~~~~~i 394 (828)
+.....|.|||+.-. .|+++.|||.||+.||-+|+... ..||+|+..+..-
T Consensus 44 ~~~~FdCNICLd~ak----dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK----DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccC----CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 346689999999965 68999999999999999999864 3499999877543
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.8e-08 Score=95.86 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=42.4
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
....|||||+.+... .++.+.|||+||..||...++....||+|++.++
T Consensus 130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 458999999998743 5677899999999999999999999999997543
No 16
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.36 E-value=1.7e-07 Score=116.38 Aligned_cols=147 Identities=21% Similarity=0.381 Sum_probs=114.6
Q ss_pred CCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC-------CCCCC------CCCCCCCCC
Q 003343 434 YENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV-------ALGSS------SSQAQDPLP 499 (828)
Q Consensus 434 ~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~-------~~g~~------~~q~~~~~~ 499 (828)
.....|..|..+.....+ +|+.|...||.+|+.++ ..++.+.|.|+.|... .+||. ....|..++
T Consensus 153 ~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~ 231 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYA 231 (904)
T ss_pred ccchhhhccccCCCccce-ecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHh
Confidence 345678999988776545 99999999999999998 8899999999999875 23333 234577777
Q ss_pred cccccccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCC------CcccCCcccCCCCCCCCCCCcccchhh-H
Q 003343 500 DLRTASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSP------RFTVGDVQAASPGSGAGAPTLTGRRWI-H 572 (828)
Q Consensus 500 ~~f~~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~------~~ygadih~~s~~s~~gf~t~~~~~~l-~ 572 (828)
+.| +..||.++....+. ...++..||+++.. +.||+|+++...|+ |||.....+.+ .
T Consensus 232 ~~~--~~~~~~~~~~~~~~------------~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s--~~~~~~~~~~~~~ 295 (904)
T KOG1246|consen 232 DNF--KKDYFPKSKNSPDS------------TEDVEKEFWRLVASNLESVEVLYGADLSTKEFGS--GFPKSASGPLLGS 295 (904)
T ss_pred hhh--hccccccccCCCCc------------hHHHHHHHHHhhcccccceeeeeccchhhccccc--cccccCCCCCCCc
Confidence 777 67888888776552 11456777776664 35999999999998 99988877777 5
Q ss_pred HHHHHhhcccccCCCCCCCCCCCCc
Q 003343 573 RHIQNLLSMNRMNFMSGNNDGMPTA 597 (828)
Q Consensus 573 ~~i~~~~s~~~~~~~~~~~~g~~~~ 597 (828)
...++..++|||++++..+......
T Consensus 296 ~~~~y~~s~wnL~~i~~~~~svl~~ 320 (904)
T KOG1246|consen 296 EAEKYSNSGWNLNNIPRLEGSVLSH 320 (904)
T ss_pred chhhhccCcccccccccCCcccccc
Confidence 7889999999999999988654433
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.33 E-value=4.2e-07 Score=76.11 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=40.6
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
..|+||++.+. .|++++|||+||..||..|+.....||.|+..+.
T Consensus 2 ~~Cpi~~~~~~----~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK----DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC----CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 57999999987 5789999999999999999988888999998764
No 18
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.31 E-value=2.6e-07 Score=97.46 Aligned_cols=52 Identities=38% Similarity=0.893 Sum_probs=44.2
Q ss_pred CCcccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccC-CCCCCC
Q 003343 434 YENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCD-GCRPVA 486 (828)
Q Consensus 434 ~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp-~C~~~~ 486 (828)
.++..|.+|+....+..++|||.|+++||++|+++. .+|.|.|.|. .|....
T Consensus 312 ~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~-~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 312 SSCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQ-DLPRGEWICDMRCREAT 364 (381)
T ss_pred cccHhhhccCCcccchheeccccccCCCCccccccc-cccCccchhhhHHHHhc
Confidence 355678899998888889999999999999999987 8999999998 465533
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.27 E-value=4.5e-07 Score=69.86 Aligned_cols=38 Identities=39% Similarity=1.012 Sum_probs=32.7
Q ss_pred ccccccccccccccce-eccCCCccChhhHHHHhh--cCCCCCCc
Q 003343 346 CGICLSEEDKRRLRGT-LNCCSHYFCFTCIMEWSK--VESRCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~~-l~~CgH~FC~~CI~~w~~--~~~~CP~C 387 (828)
|+||++.+. .++ +++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~----~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE----DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS----SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc----CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987 345 889999999999999988 45569998
No 20
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.9e-07 Score=100.42 Aligned_cols=49 Identities=35% Similarity=0.792 Sum_probs=40.2
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcC-CCCCCccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-SRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-~~CP~CR~~~~~ 393 (828)
..|.|||+.|..+.... +++|.|.||..||..|+... ..||+|++....
T Consensus 230 ~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeee-EecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 59999999998665544 46799999999999999776 459999985543
No 21
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.25 E-value=7.3e-07 Score=68.30 Aligned_cols=43 Identities=42% Similarity=0.913 Sum_probs=35.1
Q ss_pred cccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCcccc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQR 390 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~ 390 (828)
.|+||++.+. ....+++|+|.||..|+..|+.. ...||+|+..
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999983 13445569999999999999987 6779999865
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=6.5e-07 Score=100.81 Aligned_cols=48 Identities=33% Similarity=0.690 Sum_probs=42.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..+.|+||++.|. .+++++|+|.||..||..|+.....||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~----~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD----VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh----CccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4589999999987 57888999999999999999888889999998764
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.20 E-value=8.6e-07 Score=69.84 Aligned_cols=44 Identities=30% Similarity=0.869 Sum_probs=37.2
Q ss_pred cccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
.|+||+..+. ....++++.|||+||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999993 3446899999999999999998866678999984
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.6e-07 Score=94.95 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=42.2
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCcccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~ 392 (828)
.+..|.|||+.|.+.. .-++++|.|.||..||..|+. .++.||+||.++.
T Consensus 322 ~GveCaICms~fiK~d-~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKND-RLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccc-eEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4588999999997443 366778999999999999997 7889999998663
No 25
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.19 E-value=4.5e-07 Score=97.73 Aligned_cols=49 Identities=29% Similarity=0.646 Sum_probs=45.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.-+.|.||.++|. +|++++|+|+||.-||..++.....||.|..+|...
T Consensus 22 ~lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhc----CceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 3478999999998 899999999999999999999999999999988754
No 26
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.17 E-value=3.9e-07 Score=73.54 Aligned_cols=47 Identities=47% Similarity=1.140 Sum_probs=40.0
Q ss_pred cccccccCCCCcccccccccccccccccCCCC-C--CCCCCCcccCCCCC
Q 003343 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-R--VVPEGNWYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~--~vP~g~W~Cp~C~~ 484 (828)
+|.+|+.......||.|+.|..+||..|++|+ . .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899998778889999999999999999998 3 45556999999853
No 27
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.14 E-value=1.4e-06 Score=107.34 Aligned_cols=131 Identities=17% Similarity=0.316 Sum_probs=80.0
Q ss_pred CcccccccccCCCC--cccccccccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCC--------CCCCCCCcccc-
Q 003343 435 ENVICSECHQGGDD--GLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALGSSSS--------QAQDPLPDLRT- 503 (828)
Q Consensus 435 e~~~C~vC~~~~~~--~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g~~~~--------q~~~~~~~~f~- 503 (828)
+..+|.+|..+... ..+++||.|+.++|++|.+.+ .+|+|.|+|..|.....+.... .-.++....|.
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~-~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~H 296 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP-FIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWAH 296 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCC-CCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCceee
Confidence 45789999887654 789999999999999999966 6999999999998754333211 11112222222
Q ss_pred ------cccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCCC-CcccchhhH
Q 003343 504 ------ASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAASPGSGAGAP-TLTGRRWIH 572 (828)
Q Consensus 504 ------~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~~~ygadih~~s~~s~~gf~-t~~~~~~l~ 572 (828)
....+|.....+.++. ++ .-..+.|....|.+|- .+..||+||+.--.-.+.|+ |..++.-|+
T Consensus 297 v~caiwipev~F~nt~~~E~I~-~i--~~i~~aRwkL~cy~cK---~~~~gaciqcs~~~c~~a~hvtca~~agl~ 366 (1051)
T KOG0955|consen 297 VVCAIWIPEVSFANTVFLEPID-SI--ENIPPARWKLTCYICK---QKGLGACIQCSKANCYTAFHVTCARRAGLY 366 (1051)
T ss_pred eehhhcccccccccchhhcccc-ch--hcCcHhhhhceeeeec---cCCCCcceecchhhhhhhhhhhhHhhcCce
Confidence 2345566665555544 11 1222345444555554 34489999997654333343 334444443
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.4e-06 Score=93.15 Aligned_cols=54 Identities=20% Similarity=0.607 Sum_probs=43.4
Q ss_pred ccCCccccccccccccc---------cccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 340 EVAKQVCGICLSEEDKR---------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~---------~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
.-.+..|.||++.+-.. ...|+-++|||.||+.|+..|++...+||.||.++..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 34578999999984221 2345677899999999999999999999999998544
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.08 E-value=1.9e-06 Score=76.96 Aligned_cols=51 Identities=35% Similarity=0.783 Sum_probs=38.5
Q ss_pred Ccccccccccccccc--------c-cceeccCCCccChhhHHHHhhc---CCCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRR--------L-RGTLNCCSHYFCFTCIMEWSKV---ESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~--------~-~~~l~~CgH~FC~~CI~~w~~~---~~~CP~CR~~~~~ 393 (828)
+..|+||+..|...- . ..+.-.|+|.||..||.+|+.. ...||+||+.+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 678999999886321 1 1233359999999999999974 4679999998753
No 30
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.07 E-value=2.4e-06 Score=63.15 Aligned_cols=38 Identities=42% Similarity=1.047 Sum_probs=32.5
Q ss_pred ccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~C 387 (828)
|+||++... .+++++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999854 567788999999999999987 56679987
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.6e-06 Score=98.46 Aligned_cols=47 Identities=28% Similarity=0.759 Sum_probs=38.0
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcC-----CCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE-----SRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~-----~~CP~CR~~~~~ 393 (828)
...|||||+... .++.+.|||+||+.||..++... ..||+|+..++.
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 688999999975 67888899999999998655432 459999977654
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.06 E-value=1.5e-06 Score=92.09 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=44.5
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
.+.|-||...|. ++++++|||.||.-||..++.....||+||..+....
T Consensus 25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred HHHhhhhhheee----cceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 378999999997 8999999999999999999999999999999876543
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-06 Score=91.29 Aligned_cols=48 Identities=33% Similarity=0.923 Sum_probs=40.9
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHH-HhhcCCC-CCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME-WSKVESR-CPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~-w~~~~~~-CP~CR~~~~~ 393 (828)
.+..|+||++... .+..++|||.||+.||.. |.....- ||+||+..+.
T Consensus 214 ~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccC----CcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 4689999999976 689999999999999998 9876655 9999986643
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2e-06 Score=90.06 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=38.1
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
.+...|+||++.|. .+++++|+|.||..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~----~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR----EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh----cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 35689999999997 4588899999999999987665567999994
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.99 E-value=3.1e-06 Score=66.65 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=22.8
Q ss_pred ccccccccccccccceeccCCCccChhhHHHHhhc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV 380 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~ 380 (828)
|+||++ |......|++++|||+||..||..|+..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 7655667899999999999999999874
No 36
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.98 E-value=2.2e-06 Score=99.31 Aligned_cols=50 Identities=30% Similarity=0.754 Sum_probs=44.7
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC---CCCCCCCcccCCCCCC
Q 003343 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG---RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~---~~vP~g~W~Cp~C~~~ 485 (828)
..+|..|++.+.-..+++||+|+.+||++||.|| ..+|.|.|||+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 3489999998775667999999999999999998 7899999999999875
No 37
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.88 E-value=4.4e-06 Score=93.38 Aligned_cols=46 Identities=30% Similarity=0.777 Sum_probs=36.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
+-.+|||||+.+.......+.+.|.|.||-.|+..|. ..+||+||-
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhh
Confidence 4578999999997554444555699999999999994 457999983
No 39
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.85 E-value=4.3e-06 Score=93.80 Aligned_cols=115 Identities=22% Similarity=0.335 Sum_probs=73.5
Q ss_pred cccccccccCCC--CcccccccccccccccccCCCCCCCCCCCcccCCCCCCCCC--------CCCCCCCCCCCccccc-
Q 003343 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALG--------SSSSQAQDPLPDLRTA- 504 (828)
Q Consensus 436 ~~~C~vC~~~~~--~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g--------~~~~q~~~~~~~~f~~- 504 (828)
+..|.+|...+. .+.+++|++|+-+.|..|.+++ .+|+|.|+|..|.-.... .+...-.++....|.+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~-f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H~ 271 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ-FLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGHV 271 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccce-ecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHhH
Confidence 457888887654 4679999999999999999998 899999999999865322 2222223334444432
Q ss_pred ------ccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCC
Q 003343 505 ------STNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGNLSSPRFTVGDVQAASPGS 558 (828)
Q Consensus 505 ------k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~~~s~~~ygadih~~s~~s 558 (828)
...+|..-..+.|+.+.- ..++-|+..-|.+|. .+.|++|||.-..-
T Consensus 272 iCA~~~pelsF~~l~~~dpI~~i~---sVs~srwkl~C~iCk----~~~GtcIqCs~~nC 324 (669)
T COG5141 272 ICAMFNPELSFGHLLSKDPIDNIA---SVSSSRWKLGCLICK----EFGGTCIQCSYFNC 324 (669)
T ss_pred hHHHhcchhccccccccchhhhhc---ccchhhHhheeeEEc----ccCcceeeecccch
Confidence 233344333333332111 123345555677666 67899999987654
No 40
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.73 E-value=1.2e-05 Score=87.16 Aligned_cols=48 Identities=42% Similarity=0.914 Sum_probs=37.6
Q ss_pred CcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCCC
Q 003343 435 ENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+..+| +|..... ..|+-||. |+ .|||+.|+++. ..|.|.|||+.|...
T Consensus 218 e~~yC-~Cnqvsy-g~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 218 EPTYC-ICNQVSY-GKMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCPRCKAE 268 (274)
T ss_pred CCEEE-Eeccccc-ccccccCCCCCCcceEEEeccccc-cCCCCcccchhhhhh
Confidence 44455 4543332 33999998 99 99999999997 789999999999874
No 41
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=2.1e-05 Score=85.76 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=37.3
Q ss_pred CCccccccccc--cccccccceeccCCCccChhhHHH-HhhcCCCCCCcccccccc
Q 003343 342 AKQVCGICLSE--EDKRRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~--~~~~~~~~~l~~CgH~FC~~CI~~-w~~~~~~CP~CR~~~~~i 394 (828)
.+..||||+.. +... ....+..|||.||..||.. |......||.|+..+...
T Consensus 2 d~~~CP~Ck~~~y~np~-~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcc-cccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 45789999994 3322 2222337999999999997 556667899999876553
No 42
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.69 E-value=2e-05 Score=68.76 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=38.0
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (828)
.+.|+||++.+. .|++++|||+|+..||..|+.. ...||+|+..+..
T Consensus 4 ~f~CpIt~~lM~----dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMR----DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-S----SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhh----CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 478999999987 7899999999999999999988 7889999887754
No 43
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.7e-05 Score=93.67 Aligned_cols=49 Identities=27% Similarity=0.708 Sum_probs=40.9
Q ss_pred cCCccccccccccccc-cccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 341 VAKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~-~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
.....|+||++.+... ...+..++|+|.||..||..|++...+||.||.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 3468999999998621 122567779999999999999999999999998
No 44
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.63 E-value=3.4e-05 Score=67.64 Aligned_cols=50 Identities=28% Similarity=0.583 Sum_probs=37.0
Q ss_pred ccccccccccccc-----------cccce-eccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 344 QVCGICLSEEDKR-----------RLRGT-LNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~-----------~~~~~-l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..|.||...|.+. ..-++ --.|.|.||..||.+|+...+.||+|++++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 5677777765421 11111 22499999999999999999999999998854
No 45
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.62 E-value=4e-05 Score=75.39 Aligned_cols=31 Identities=35% Similarity=0.739 Sum_probs=27.1
Q ss_pred ccccccCCCC-CCCCCCCcccCCCCCCCCCCC
Q 003343 460 SAHTYCVGLG-RVVPEGNWYCDGCRPVALGSS 490 (828)
Q Consensus 460 ~~H~~CL~p~-~~vP~g~W~Cp~C~~~~~g~~ 490 (828)
+||++||.|| ..+|+|+|+||.|.....+..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 5999999999 999999999999998755433
No 46
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.62 E-value=1.3e-05 Score=93.73 Aligned_cols=50 Identities=38% Similarity=0.889 Sum_probs=43.7
Q ss_pred CcccccccccCCC--CcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 435 ENVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~--~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
+.++|.+|..++. ...|+||+.|..-.|..|.++. .+|.|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIl-e~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGIL-EVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhcee-ecCCCCeeehhcccc
Confidence 6789999988754 3469999999999999999997 899999999999653
No 47
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.3e-05 Score=68.22 Aligned_cols=52 Identities=31% Similarity=0.764 Sum_probs=38.3
Q ss_pred CCccccccccccccccccceec---------cCCCccChhhHHHHhhc---CCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLN---------CCSHYFCFTCIMEWSKV---ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~---------~CgH~FC~~CI~~w~~~---~~~CP~CR~~~~~ 393 (828)
.+.+|.||.-.|...-..+.++ -|.|.||..||.+|+.. ...||+||+.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4569999999986432222222 38899999999999964 3559999998754
No 48
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=2.4e-05 Score=71.65 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=37.5
Q ss_pred CCccccccccccccc-----------cccceec--cCCCccChhhHHHHhhcCCCCCCcccccc
Q 003343 342 AKQVCGICLSEEDKR-----------RLRGTLN--CCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~-----------~~~~~l~--~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
.-..|+||...+... ...+++. .|+|.||+-||.+|++..+.||+|.+..-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 346899998865321 1112222 39999999999999999999999987653
No 49
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.43 E-value=4.8e-05 Score=90.88 Aligned_cols=88 Identities=28% Similarity=0.702 Sum_probs=63.5
Q ss_pred CCCccChhhHHHHhh----cCCCCCCccccccccccCCCCcccccccceeecccccccccCCchhhhhcccCCCCccccc
Q 003343 365 CSHYFCFTCIMEWSK----VESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQVYQPSEEDLRSFLDPYENVICS 440 (828)
Q Consensus 365 CgH~FC~~CI~~w~~----~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvperdq~~~~seEel~~~ld~~e~~~C~ 440 (828)
|...||..|+..-++ ....||.|-...... +..+..+ .-.+...|.
T Consensus 2 ~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~-------------------~~~~~~~-----------~~~~~e~c~ 51 (696)
T KOG0383|consen 2 CPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV-------------------EAKDDDW-----------DDAEQEACR 51 (696)
T ss_pred CCcccCcCCCCcccccCCcCCccCcchhhccccc-------------------ccccCCc-----------chhhhhhhh
Confidence 788899999875443 346799885433222 1111111 112445899
Q ss_pred ccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003343 441 ECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 441 vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
+|..++. +++|+.|..+||.+|+++| ..+|.+.|.|+.|..+
T Consensus 52 ic~~~g~---~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 52 ICADGGE---LLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhcCCCc---EEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 9998877 8999999999999999998 8899888999999554
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=7.2e-05 Score=83.10 Aligned_cols=54 Identities=30% Similarity=0.872 Sum_probs=41.8
Q ss_pred CCcccccccccccccc----ccceeccCCCccChhhHHHHhh--c-----CCCCCCccccccccc
Q 003343 342 AKQVCGICLSEEDKRR----LRGTLNCCSHYFCFTCIMEWSK--V-----ESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~----~~~~l~~CgH~FC~~CI~~w~~--~-----~~~CP~CR~~~~~i~ 395 (828)
...+|.||++.+.... ..+++++|.|.||..||..|.. . ...||.||.....+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 3578999999875321 1466788999999999999983 3 467999998776654
No 51
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.39 E-value=6.2e-05 Score=79.16 Aligned_cols=47 Identities=40% Similarity=0.931 Sum_probs=38.4
Q ss_pred CcccccccccCCCCcccccccc--cc-cccccccCCCCCCCCCCCcccCCCCC
Q 003343 435 ENVICSECHQGGDDGLMLLCDI--CD-SSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~--Cd-~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
+..+| .|.+..... |+-||+ |. .|||+.|+++. +.|.|.|||+.|..
T Consensus 220 e~lYC-fCqqvSyGq-MVaCDn~nCkrEWFH~~CVGLk-~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYC-FCQQVSYGQ-MVACDNANCKREWFHLECVGLK-EPPKGKWYCPECKK 269 (271)
T ss_pred ceeEE-Eeccccccc-ceecCCCCCchhheeccccccC-CCCCCcEeCHHhHh
Confidence 34566 788876543 999997 87 58999999987 89999999999975
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=5.8e-05 Score=89.73 Aligned_cols=48 Identities=23% Similarity=0.671 Sum_probs=40.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~ 393 (828)
+-..|++|-..|. ..+++.|+|.||..||..... ....||.|+..|..
T Consensus 642 ~~LkCs~Cn~R~K----d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK----DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh----hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4589999998876 568888999999999996654 56779999998854
No 53
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.28 E-value=6.3e-05 Score=96.30 Aligned_cols=53 Identities=38% Similarity=0.866 Sum_probs=48.2
Q ss_pred CCCcccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCCC
Q 003343 433 PYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 433 ~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~ 485 (828)
......|.+|....+...|++|+.|..+||++|+.|. ..+|.|+|+||.|+..
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 3456789999998888889999999999999999998 8899999999999975
No 54
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=4.1e-05 Score=83.71 Aligned_cols=49 Identities=35% Similarity=0.804 Sum_probs=38.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc-CCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~~~ 393 (828)
..+.|+|||+.+... .+...|.|.||+.||..-++. .+.||.||+....
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 458999999998633 345569999999999876654 5679999987644
No 55
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=7.2e-05 Score=61.21 Aligned_cols=52 Identities=25% Similarity=0.679 Sum_probs=40.7
Q ss_pred CCccccccccccccccccceeccCCCc-cChhhHH-HHhhcCCCCCCccccccccccC
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIM-EWSKVESRCPLCKQRFKTITKP 397 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~-~w~~~~~~CP~CR~~~~~i~~~ 397 (828)
+...|.||++.-. ..++-.|||. .|+.|-. .|.-....||+||+++..+++.
T Consensus 6 ~~dECTICye~pv----dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 6 WSDECTICYEHPV----DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKT 59 (62)
T ss_pred cccceeeeccCcc----hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHh
Confidence 4578999999754 4567779998 8999955 5655778899999998776543
No 56
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.16 E-value=0.00025 Score=80.97 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=74.2
Q ss_pred CCccccccccccccc-cccceeccCCCccChhhHHHHhh--cCCCCCCccccccccccCCCCcccccccceeeccccccc
Q 003343 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEWSK--VESRCPLCKQRFKTITKPERSTAGVDLRSVVIQVPERDQ 418 (828)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~CgH~FC~~CI~~w~~--~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~viqvperdq 418 (828)
....|.||....... ....++..|++.||..|-..-.. ....|-.|..++....-. ....|...+ .++..+....
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~-a~K~g~~a~-~~l~y~~~~l 159 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGG-ALKKGRLAR-PSLPYPEASL 159 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccc-ccccccccc-ccccCccccc
Confidence 457899998875422 11334556889999999653221 123354476655443211 011110000 1111111111
Q ss_pred ccCCchhhhhcccCCCCcccccccccC--CCCcccccccccccccccccCCCC-----CCCCCCCcccCCCCCC
Q 003343 419 VYQPSEEDLRSFLDPYENVICSECHQG--GDDGLMLLCDICDSSAHTYCVGLG-----RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 419 ~~~~seEel~~~ld~~e~~~C~vC~~~--~~~~~~llCd~Cd~~~H~~CL~p~-----~~vP~g~W~Cp~C~~~ 485 (828)
.| .....-+..|.+|..+ +....||.|+.|..+||..|..|+ ..-|.+.|||..|...
T Consensus 160 ~w---------D~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 160 DW---------DSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cc---------CccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 11 0011123347787654 334589999999999999999986 2345678999999885
No 57
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.16 E-value=0.00019 Score=61.02 Aligned_cols=43 Identities=33% Similarity=0.772 Sum_probs=22.8
Q ss_pred Cccccccccccccccccce-eccCCCccChhhHHHHhhcCCCCCCccccc
Q 003343 343 KQVCGICLSEEDKRRLRGT-LNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~-l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~ 391 (828)
-..|++|.+.+. .|+ +..|.|.||..||...+. ..||+|+.+.
T Consensus 7 lLrCs~C~~~l~----~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILK----EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--S----S-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred hcCCcHHHHHhc----CCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 478999999986 565 467999999999977544 3499998765
No 58
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.12 E-value=0.00015 Score=63.00 Aligned_cols=51 Identities=25% Similarity=0.559 Sum_probs=23.6
Q ss_pred Ccccccccccccccc--ccceec--cCCCccChhhHHHHhhcC-----------CCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRR--LRGTLN--CCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~--~~~~l~--~CgH~FC~~CI~~w~~~~-----------~~CP~CR~~~~~ 393 (828)
...|+||+..+.... ...+.. .|++.||..||..|+... ..||.|++++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 367999999865222 233443 699999999999998521 239999987643
No 59
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.08 E-value=0.0002 Score=83.53 Aligned_cols=159 Identities=14% Similarity=0.223 Sum_probs=90.1
Q ss_pred ccccccccC-CC-Ccccccccc--cccccccccCCCCCCCCCCCcccCCCCCC---------CCCCCCCCCCCCCCcccc
Q 003343 437 VICSECHQG-GD-DGLMLLCDI--CDSSAHTYCVGLGRVVPEGNWYCDGCRPV---------ALGSSSSQAQDPLPDLRT 503 (828)
Q Consensus 437 ~~C~vC~~~-~~-~~~~llCd~--Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~---------~~g~~~~q~~~~~~~~f~ 503 (828)
.-|.||... ++ +..++|||+ |..++|..|+++- .||.|.|||..|... -+.+....+..+-...|+
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv-qVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWA 84 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV-QVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWA 84 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeE-ecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCce
Confidence 458899653 32 567999997 8899999999997 899999999999642 233332222222222232
Q ss_pred -------cccccCCCCCCCcCCCcccCCCCCCCCCCCC--CCCCCCC---CCCCcccCCcccCCCCCCCCCCCc-ccc--
Q 003343 504 -------ASTNLYNRPSPIVSFGEGFDPYSVSSPRIPL--TPGSGNL---SSPRFTVGDVQAASPGSGAGAPTL-TGR-- 568 (828)
Q Consensus 504 -------~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~--~~~~~~~---~s~~~ygadih~~s~~s~~gf~t~-~~~-- 568 (828)
+..--|..=..|.||- |..+|...| .|.+|.- ..-.--||+..|--+|---.|..- .++
T Consensus 85 HVVCALYIPEVrFgNV~TMEPIi------Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~G 158 (900)
T KOG0956|consen 85 HVVCALYIPEVRFGNVHTMEPII------LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAG 158 (900)
T ss_pred EEEEEeeccceeeccccccccee------eccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhc
Confidence 2233355555555543 333343333 5555541 112247899888888765445421 111
Q ss_pred ----------hhh------HHHHHHhhcccccCCCCCCCCCCCCcCCCCC
Q 003343 569 ----------RWI------HRHIQNLLSMNRMNFMSGNNDGMPTANLNSE 602 (828)
Q Consensus 569 ----------~~l------~~~i~~~~s~~~~~~~~~~~~g~~~~~~~~~ 602 (828)
+.+ --|...|+.+.+..+.|--.-..++.++++-
T Consensus 159 LLCEE~gn~~dNVKYCGYCk~HfsKlkk~~~~k~ipsy~~s~s~s~s~q~ 208 (900)
T KOG0956|consen 159 LLCEEEGNISDNVKYCGYCKYHFSKLKKSPAIKVIPSYKPSQSASPSVQQ 208 (900)
T ss_pred cceeccccccccceechhHHHHHHHhhcCCCcccCCCCccccccCCchhh
Confidence 100 0266777777777666533333344444433
No 60
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00025 Score=76.36 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=39.7
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTIT 395 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~i~ 395 (828)
...|+||+.... .|+.+.|+|.||+-||..-.. ....|++||.+|..-+
T Consensus 7 ~~eC~IC~nt~n----~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGN----CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCC----cCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 367999999865 789999999999999985443 3456999999987643
No 61
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.05 E-value=0.00089 Score=75.89 Aligned_cols=50 Identities=28% Similarity=0.697 Sum_probs=44.0
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCC-CCCCCC----CcccCCCCC
Q 003343 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEG----NWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g----~W~Cp~C~~ 484 (828)
..+.|.+|.+..+..+++.||.|...||+.||.|| +.+|.. .|.|..|..
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 45689999999888999999999999999999999 778854 499999954
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.04 E-value=0.0001 Score=80.28 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=43.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccccCC
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPE 398 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~ 398 (828)
-.+|.+|..+|..+ .+++-|.|+||..||..++....+||.|...++......
T Consensus 15 ~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 15 HITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLL 67 (331)
T ss_pred ceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccc
Confidence 47899999998744 345569999999999999999999999998887765433
No 63
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00024 Score=80.33 Aligned_cols=50 Identities=28% Similarity=0.693 Sum_probs=37.8
Q ss_pred Cccccccccccccc--cc-----------cceeccCCCccChhhHHHHhh-cCCCCCCcccccc
Q 003343 343 KQVCGICLSEEDKR--RL-----------RGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFK 392 (828)
Q Consensus 343 ~~~C~ICle~~~~~--~~-----------~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~ 392 (828)
...|+|||..+.-. .. .-.+++|.|.||..|+.+|+. .+..||+||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 46799999976311 00 124558999999999999999 5668999998763
No 64
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.97 E-value=0.00028 Score=84.56 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=39.5
Q ss_pred CCccccccccccc---cccccceeccCCCccChhhHHHHhhcC--CCCCCccccccc
Q 003343 342 AKQVCGICLSEED---KRRLRGTLNCCSHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~---~~~~~~~l~~CgH~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (828)
+-..|+||+..+. ..-....+..|.|.||..||-.|.... ++||+||..++.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4578999999864 111234566699999999999999864 569999977654
No 65
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.86 E-value=0.00071 Score=54.85 Aligned_cols=42 Identities=29% Similarity=0.762 Sum_probs=31.5
Q ss_pred cccccccccccccccceeccCC-----CccChhhHHHHhhcC--CCCCCcc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--SRCPLCK 388 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~~--~~CP~CR 388 (828)
.|.||++... ...+.+.||. |+||..||..|+... .+||+|+
T Consensus 1 ~CrIC~~~~~--~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD--EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC--CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998332 2245667775 899999999999654 4799995
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00095 Score=73.90 Aligned_cols=46 Identities=28% Similarity=0.831 Sum_probs=35.5
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCC---CCCCcc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES---RCPLCK 388 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~---~CP~CR 388 (828)
...|.||-+.+......+-+-.|||+||..|+..|....+ .||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4679999777654444444555999999999999998643 599998
No 67
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=96.45 E-value=0.00094 Score=70.88 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=72.7
Q ss_pred cccccccccC-------CCCcccccccccccccccccCCCC----CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCcccc
Q 003343 436 NVICSECHQG-------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRT 503 (828)
Q Consensus 436 ~~~C~vC~~~-------~~~~~~llCd~Cd~~~H~~CL~p~----~~vP~g~W~Cp~C~~~-~~g~~~~q~~~~~~~~f~ 503 (828)
..+|..|-.. +.++.++.|..|+++-|-.||... ..|....|.|-.|... .+|.+... +
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend------d--- 294 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND------D--- 294 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC------c---
Confidence 4578888543 346679999999999999999864 4566788999999876 45533211 1
Q ss_pred cccccCCCCCCCcCCCcccCCCCCCCCCCCCCCCCCC
Q 003343 504 ASTNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPGSGN 540 (828)
Q Consensus 504 ~k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~~~~ 540 (828)
...+|+-|-.-||.+ ||.||+...|.|.|.|..|.
T Consensus 295 -qllfcddcdrgyhmy-clsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 295 -QLLFCDDCDRGYHMY-CLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred -eeEeecccCCceeeE-ecCCCcCCCCCCchhHHHHH
Confidence 236678888889999 99999999999999987764
No 68
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0013 Score=74.77 Aligned_cols=50 Identities=24% Similarity=0.650 Sum_probs=43.4
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
...+.|.||+..+. .++.++|||.||..||.+.+.....||.||..+...
T Consensus 82 ~sef~c~vc~~~l~----~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALY----PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcC----CCccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 34688999999986 678889999999999999888888899999988753
No 69
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0017 Score=71.69 Aligned_cols=50 Identities=28% Similarity=0.675 Sum_probs=41.7
Q ss_pred cCCccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.....|.|||.... ..++++|.|. .|..|.....-..+.||+||+++...
T Consensus 288 ~~gkeCVIClse~r----dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESR----DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCc----ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 35688999999865 5688899998 99999887666788999999988664
No 70
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.38 E-value=0.00084 Score=74.91 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=28.3
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~ 378 (828)
+.+.|+||...|. .|++++|+|..|..|...-+
T Consensus 3 eelkc~vc~~f~~----epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYR----EPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhcc----CceEeecccHHHHHHHHhhc
Confidence 4589999999997 68999999999999987544
No 71
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.37 E-value=0.0027 Score=75.38 Aligned_cols=55 Identities=9% Similarity=0.212 Sum_probs=37.4
Q ss_pred cccccccccccc---ccccceeccCCCccChhhHHHHhhc------CCCCCCccccccccccCC
Q 003343 344 QVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIMEWSKV------ESRCPLCKQRFKTITKPE 398 (828)
Q Consensus 344 ~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~~w~~~------~~~CP~CR~~~~~i~~~~ 398 (828)
..|.||.-.+.. ...++.+..|+|.||..||..|... .-.|++|...|..+....
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 455555544432 2224445569999999999999863 234999998888876554
No 72
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=96.34 E-value=0.00087 Score=61.23 Aligned_cols=21 Identities=33% Similarity=0.140 Sum_probs=11.3
Q ss_pred ccccCCCCCCCcchhhHHhhh
Q 003343 88 EEVFDSFEGEDEDEEEEVDVR 108 (828)
Q Consensus 88 ~~~~d~~edEdeDeeeee~~~ 108 (828)
...++..+++|.+...++...
T Consensus 53 ~~~d~~LDedDldLi~EN~g~ 73 (92)
T PF14632_consen 53 EEEDDRLDEDDLDLIEENLGV 73 (92)
T ss_pred hhhhhhcCHHHHHHHHHcCCc
Confidence 334445566666666555554
No 73
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0031 Score=67.34 Aligned_cols=50 Identities=22% Similarity=0.648 Sum_probs=36.9
Q ss_pred CCcccccccccccccccccee-ccCCCccChhhHHHHhh--cCCCCCCccccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSK--VESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~CgH~FC~~CI~~w~~--~~~~CP~CR~~~~~i~ 395 (828)
.+.+|++|.+.-. +|-. .+|+|.||+.||..-.. ..-+||.|......+.
T Consensus 238 ~~~~C~~Cg~~Pt----iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 238 SDTECPVCGEPPT----IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred CCceeeccCCCCC----CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 4689999998744 3444 45999999999985443 3467999998776443
No 74
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.16 E-value=0.0017 Score=66.14 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=42.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
-.+.|.||...|. .|+++.|||.||..|...-.+....|-+|.+..+...
T Consensus 195 IPF~C~iCKkdy~----spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 195 IPFLCGICKKDYE----SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred Cceeehhchhhcc----chhhhhcchhHHHHHHHHHhccCCcceecchhhccce
Confidence 3578999999987 5789999999999998877777788999988766543
No 75
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.16 E-value=0.0027 Score=74.60 Aligned_cols=91 Identities=27% Similarity=0.473 Sum_probs=66.3
Q ss_pred cccccccccCCC--CcccccccccccccccccCCCC--CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCcccccccccCC
Q 003343 436 NVICSECHQGGD--DGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTASTNLYN 510 (828)
Q Consensus 436 ~~~C~vC~~~~~--~~~~llCd~Cd~~~H~~CL~p~--~~vP~g~W~Cp~C~~~-~~g~~~~q~~~~~~~~f~~k~~~f~ 510 (828)
...|.+|+..+. ...|+.|..|..-||.+|+..- ..+-.+-|.||.|+.. ++++. +....| ..|.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~------gD~~kf----~~Ck 87 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTT------GDPKKF----LLCK 87 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecccc------CCcccc----cccc
Confidence 346777765433 4569999999999999999953 2222344999999875 56522 223333 6788
Q ss_pred CCCCCcCCCcccCCCCCCCCCCCCCCC
Q 003343 511 RPSPIVSFGEGFDPYSVSSPRIPLTPG 537 (828)
Q Consensus 511 ~p~~~~~~~~~ldp~l~~~pr~~~~~~ 537 (828)
.+--.||++ |+.|++..++-+.|.|.
T Consensus 88 ~cDvsyh~y-c~~P~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 88 RCDVSYHCY-CQKPPNDKVPSGPWLCK 113 (694)
T ss_pred ccccccccc-ccCCccccccCcccccH
Confidence 888899998 99999999999888554
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0019 Score=69.69 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=43.6
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
-.+.|.||...|. .+|+..|+|+||..|...-++....|++|.+.++.+.
T Consensus 240 ~Pf~c~icr~~f~----~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 240 LPFKCFICRKYFY----RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CCccccccccccc----cchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 3467999999997 7899999999999999887777889999998887764
No 77
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0029 Score=70.65 Aligned_cols=51 Identities=29% Similarity=0.629 Sum_probs=40.0
Q ss_pred Ccccccccccccc-ccccceeccCCCccChhhHHHHhhc--CCCCCCccccccc
Q 003343 343 KQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~-~~~~~~l~~CgH~FC~~CI~~w~~~--~~~CP~CR~~~~~ 393 (828)
..+||||++.|.- .....+.+.|||.|-..||..|+-. ...||.|...-+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 4789999999863 3446778889999999999999942 3459999765443
No 78
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.002 Score=68.43 Aligned_cols=52 Identities=27% Similarity=0.616 Sum_probs=38.8
Q ss_pred CCcccccccccccccc------ccceeccCCCccChhhHHHHhh--cCCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRR------LRGTLNCCSHYFCFTCIMEWSK--VESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~------~~~~l~~CgH~FC~~CI~~w~~--~~~~CP~CR~~~~~ 393 (828)
++..|+||-..+.... ...-.+.|+|.||-.||..|.- ...+||-|+..+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4578999998875221 0233456999999999999985 46789999876644
No 79
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0008 Score=75.16 Aligned_cols=46 Identities=28% Similarity=0.543 Sum_probs=35.2
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhc--------CCCCCCccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPLCKQ 389 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--------~~~CP~CR~ 389 (828)
-..|.||++... ++...+.++|+|+||..|+..+... ...||.|+-
T Consensus 184 lf~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhc-CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 467999999964 4456778889999999999987642 245887753
No 80
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.56 E-value=0.0059 Score=69.66 Aligned_cols=50 Identities=28% Similarity=0.733 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccee-ccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l-~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
....|+||...+. .++. +.|||.||..||..|+.....||.|+...+...
T Consensus 20 ~~l~C~~C~~vl~----~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLR----DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCcccccccc----CCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 4589999999986 4566 479999999999999998889999998776654
No 81
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.98 E-value=0.0027 Score=48.25 Aligned_cols=33 Identities=42% Similarity=1.200 Sum_probs=19.0
Q ss_pred ccccccccccccccccCCCCCCCCCC-CcccCCCC
Q 003343 450 LMLLCDICDSSAHTYCVGLGRVVPEG-NWYCDGCR 483 (828)
Q Consensus 450 ~~llCd~Cd~~~H~~CL~p~~~vP~g-~W~Cp~C~ 483 (828)
.|+.|+.|.-.+|..|.+.. .+|.+ .|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~-~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS-EVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S-S--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcc-cCCCCCcEECCcCC
Confidence 48999999999999999987 55655 79998774
No 82
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.76 E-value=0.017 Score=69.74 Aligned_cols=56 Identities=29% Similarity=0.600 Sum_probs=41.5
Q ss_pred cccCCccccccccccccccccceeccCCCccChhhHHHHhhc-------CCCCCCcccccccc
Q 003343 339 SEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-------ESRCPLCKQRFKTI 394 (828)
Q Consensus 339 ~e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-------~~~CP~CR~~~~~i 394 (828)
.....+.|.||++.+.....+=.+..|-|+||+.||..|... .|.||.|......+
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 344678999999998644344445558899999999999853 37799998544433
No 83
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.75 E-value=0.011 Score=65.69 Aligned_cols=47 Identities=26% Similarity=0.870 Sum_probs=37.5
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhc--CCCCCCcccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKTI 394 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--~~~CP~CR~~~~~i 394 (828)
..|-||-+--. ...+-+|||..|..|+..|-.. ...||.||..+.+.
T Consensus 370 eLCKICaendK----dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDK----DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCC----CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 46999988633 4567789999999999999754 46799999877654
No 84
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.67 E-value=0.017 Score=48.42 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=27.6
Q ss_pred cCCcccccccccccccccccee-ccCCCccChhhHHHHhhc--CCCCCC
Q 003343 341 VAKQVCGICLSEEDKRRLRGTL-NCCSHYFCFTCIMEWSKV--ESRCPL 386 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l-~~CgH~FC~~CI~~w~~~--~~~CP~ 386 (828)
.-...|||.+..|. .|+. ..|+|+|....|..|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~----~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE----DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S----SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh----CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999999997 5555 479999999999999943 345998
No 85
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.019 Score=63.12 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=41.6
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
.++..|+||.-.-. .++..+|+|.-|..||.+.+.....|-.|+..+..
T Consensus 420 sEd~lCpICyA~pi----~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI----NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc----hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 35689999988643 57888999999999999999999999999876654
No 86
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.026 Score=59.55 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....||||.+.+.......++-+|||+||+.|+...+.....||+|..++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 4689999999999887788889999999999999999999999999988754
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.27 E-value=0.029 Score=60.57 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=42.4
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.....|||+...|........+.+|||+|+..+|..-. ....||+|..+|...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 35689999999997554556666899999999998773 456799999999743
No 88
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.18 E-value=0.017 Score=66.23 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=38.6
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHHHhhc-----CCCCCCcccccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV-----ESRCPLCKQRFK 392 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~-----~~~CP~CR~~~~ 392 (828)
..+...|.+|.+.-. ..+...|.|.||.-||..+... ..+||+|...+.
T Consensus 533 nk~~~~C~lc~d~ae----d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAE----DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhh----hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 345678999999865 5678889999999999877642 356999976554
No 89
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.99 E-value=0.018 Score=64.15 Aligned_cols=51 Identities=25% Similarity=0.527 Sum_probs=40.0
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhc--CCCCCCcccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--~~~CP~CR~~~~ 392 (828)
-...|..|.+.+.-.......++|.|+||..|+...+.. ..+||.||+-..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 358899999988644456677889999999999988854 356999995333
No 90
>PHA02862 5L protein; Provisional
Probab=93.85 E-value=0.04 Score=54.10 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=34.2
Q ss_pred ccccccccccccccccceeccC-----CCccChhhHHHHhhcC--CCCCCccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCC-----SHYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~C-----gH~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (828)
..|-||++..... .-+| ...-|..|+.+|++.+ ..|++|+.+|..
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 6799999985422 2334 3779999999999754 569999998864
No 91
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.78 E-value=0.045 Score=44.34 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=21.8
Q ss_pred ccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCccccc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRF 391 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~ 391 (828)
|++|.+.+.........=.|++.+|+.|...-.. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899998853332222224899999999777664 467899999876
No 92
>PHA03096 p28-like protein; Provisional
Probab=93.62 E-value=0.031 Score=61.15 Aligned_cols=46 Identities=28% Similarity=0.619 Sum_probs=33.9
Q ss_pred cccccccccccc----ccccceeccCCCccChhhHHHHhhcC---CCCCCccc
Q 003343 344 QVCGICLSEEDK----RRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCKQ 389 (828)
Q Consensus 344 ~~C~ICle~~~~----~~~~~~l~~CgH~FC~~CI~~w~~~~---~~CP~CR~ 389 (828)
..|.||++.... ....+++..|.|.||..||..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 689999997542 23457888999999999999998532 33555543
No 93
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.47 E-value=0.04 Score=66.57 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=61.4
Q ss_pred ccccccccccCCCC-CCCCCCCcccCCCCCCCCCCC-CCCCCCCCCccc------ccccccCCCCCCCcCCCcccCCCCC
Q 003343 456 ICDSSAHTYCVGLG-RVVPEGNWYCDGCRPVALGSS-SSQAQDPLPDLR------TASTNLYNRPSPIVSFGEGFDPYSV 527 (828)
Q Consensus 456 ~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~~~~g~~-~~q~~~~~~~~f------~~k~~~f~~p~~~~~~~~~ldp~l~ 527 (828)
.|.+.||.-|+.|. ...|+++|.||.|.....-.+ ..+.+..-.+++ ......|+.|+..+|++ |++|++.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~-cl~~pl~ 79 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGGELLWCDTCPASFHAS-CLGPPLT 79 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCCCcEEEeccccHHHHHH-ccCCCCC
Confidence 48899999999987 666789999999976422211 011111111111 23577799999999998 9999999
Q ss_pred CCCCCCCCCCCCCCC
Q 003343 528 SSPRIPLTPGSGNLS 542 (828)
Q Consensus 528 ~~pr~~~~~~~~~~~ 542 (828)
..|.+.|.|.+|..+
T Consensus 80 ~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 80 PQPNGEFICPRCFCP 94 (696)
T ss_pred cCCccceeeeeeccC
Confidence 999988998877433
No 94
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.33 E-value=0.023 Score=61.49 Aligned_cols=52 Identities=33% Similarity=0.745 Sum_probs=37.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-----------------------cCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----------------------VESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-----------------------~~~~CP~CR~~~~~i 394 (828)
....|.|||-.|.... .-+.+.|.|+||+.|+.+++. ....||+||.++...
T Consensus 114 p~gqCvICLygfa~~~-~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSP-AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCC-ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3567999999986432 245667999999999876652 113499999876543
No 95
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.82 E-value=0.067 Score=57.55 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=59.1
Q ss_pred cccccccccC------CCCcccccccccccccccccCCCC----CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCccccc
Q 003343 436 NVICSECHQG------GDDGLMLLCDICDSSAHTYCVGLG----RVVPEGNWYCDGCRPV-ALGSSSSQAQDPLPDLRTA 504 (828)
Q Consensus 436 ~~~C~vC~~~------~~~~~~llCd~Cd~~~H~~CL~p~----~~vP~g~W~Cp~C~~~-~~g~~~~q~~~~~~~~f~~ 504 (828)
...|.+|-.+ +..+.++.|..|..++|-+|+..+ ..+....|.|..|... .++..-.. .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E------~---- 327 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIE------S---- 327 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccc------h----
Confidence 3456666443 223458999999999999999965 3455678999999765 34322100 0
Q ss_pred ccccCCCCCCCcCCCcccCCCCCCCCCCCCCCC
Q 003343 505 STNLYNRPSPIVSFGEGFDPYSVSSPRIPLTPG 537 (828)
Q Consensus 505 k~~~f~~p~~~~~~~~~ldp~l~~~pr~~~~~~ 537 (828)
...+|++|-.-+|++ .+-|-..|+|.|.|.
T Consensus 328 E~~FCD~CDRG~HT~---CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 328 EHLFCDVCDRGPHTL---CVGLQDLPRGEWICD 357 (381)
T ss_pred heeccccccCCCCcc---ccccccccCccchhh
Confidence 124467776666755 344678899999887
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.24 E-value=0.068 Score=44.40 Aligned_cols=44 Identities=30% Similarity=0.625 Sum_probs=32.9
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..|-.|...-. ..++++|+|..|..|...+ ..+-||.|.++|..
T Consensus 8 ~~~~~~~~~~~----~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGT----KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccc----ccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 56777766533 5788889999999995433 45679999988754
No 97
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.58 E-value=0.11 Score=65.38 Aligned_cols=52 Identities=31% Similarity=0.708 Sum_probs=37.7
Q ss_pred CCccccccccccccccccceeccCCCccChhhHH-----HHhhcC-----CCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM-----EWSKVE-----SRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~-----~w~~~~-----~~CP~CR~~~~~i 394 (828)
.+..|.||+-.--.+ ..++-+.|+|.||+.|.. +|+--. ..||+|..++..+
T Consensus 3485 ~DDmCmICFTE~L~A-AP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSA-APAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCC-CcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 568999998764322 246677899999999987 454322 3499999988765
No 98
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.44 E-value=0.093 Score=56.78 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=34.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHh-hcCCCCCCccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS-KVESRCPLCKQ 389 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~-~~~~~CP~CR~ 389 (828)
.+.|+.|...+... ....+|+|.||..||...+ .....||.|..
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 38899999887522 3346899999999999654 56788999965
No 99
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.34 E-value=0.12 Score=41.52 Aligned_cols=40 Identities=28% Similarity=0.884 Sum_probs=26.8
Q ss_pred ccccccccccccccceeccCC-----CccChhhHHHHhhc--CCCCCCc
Q 003343 346 CGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKV--ESRCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~--~~~CP~C 387 (828)
|-||++..... .+.+.+|. .+.|..||..|+.. ...|++|
T Consensus 1 CrIC~~~~~~~--~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED--EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS--S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC--CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 78999986533 25666665 48899999999974 4569887
No 100
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=0.096 Score=58.35 Aligned_cols=48 Identities=31% Similarity=0.809 Sum_probs=35.7
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
.....|.||++... ..+.++|||.-| |+.- .+.-..||+||+.+....
T Consensus 303 ~~p~lcVVcl~e~~----~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~~~ 350 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK----SAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRLVR 350 (355)
T ss_pred CCCCceEEecCCcc----ceeeecCCcEEE--chHH-HhhCCCCchhHHHHHHHH
Confidence 34578999999865 478889999977 7643 334455999998876543
No 101
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.054 Score=58.53 Aligned_cols=43 Identities=26% Similarity=0.752 Sum_probs=33.8
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
...|.||++.-. .++.+.|||. -|..|=... +.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~----DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPR----DCVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCc----ceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 578999999864 6899999997 788885432 379999986543
No 102
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=90.51 E-value=0.21 Score=50.08 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=35.3
Q ss_pred CCccccccccccccccccceeccCC--C---ccChhhHHHHhhcC--CCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCS--H---YFCFTCIMEWSKVE--SRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg--H---~FC~~CI~~w~~~~--~~CP~CR~~~~~i 394 (828)
....|-||.+... . ...+|. . .-|..|+..|+..+ ..|++|+.+|...
T Consensus 7 ~~~~CRIC~~~~~-~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD-V----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC-C----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4578999998853 1 223444 4 56999999999754 5699999988765
No 103
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.63 E-value=0.23 Score=54.82 Aligned_cols=53 Identities=21% Similarity=0.565 Sum_probs=40.7
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHH--HhhcCCCCCCcccccccccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME--WSKVESRCPLCKQRFKTITK 396 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~--w~~~~~~CP~CR~~~~~i~~ 396 (828)
+.+...|.||-..++ ...++||+|..|-.|..+ .+-....||+||.....+..
T Consensus 58 DEen~~C~ICA~~~T----Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 58 DEENMNCQICAGSTT----YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccccceeEEecCCce----EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 345688999999876 456778999999999764 34456779999987766543
No 104
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=0.21 Score=55.09 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=36.2
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
.....|+||+-.... ..++..-|.+||+.||..+......||+=.
T Consensus 298 ~~~~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~ 342 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVNYGHCPVTG 342 (357)
T ss_pred CccccChhHHhccCC---CceEEecceEEeHHHHHHHHHhcCCCCccC
Confidence 345789999998652 345555799999999999999999999754
No 105
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.20 E-value=0.16 Score=53.90 Aligned_cols=48 Identities=31% Similarity=0.672 Sum_probs=34.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
..|..|.-.-. ...-.++.|.|+||..|...-. ...||+|++.+..+.
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQ 51 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccCC--ccccccccceeeeee
Confidence 46888876643 3345678899999999975432 227999999866554
No 106
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=88.98 E-value=0.15 Score=49.83 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=26.1
Q ss_pred CccccccccccccccccceeccCC------CccChhhHHHHh
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCS------HYFCFTCIMEWS 378 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~Cg------H~FC~~CI~~w~ 378 (828)
...|.||++.+.. ..-.+.+.|+ |.||..|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4689999999975 1122344465 899999999994
No 107
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=88.42 E-value=0.14 Score=45.91 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 003343 1 MGRGGKVG 8 (828)
Q Consensus 1 ~~~~~~~~ 8 (828)
+||+|+++
T Consensus 9 iGRkgk~~ 16 (81)
T PF14812_consen 9 IGRKGKKS 16 (81)
T ss_dssp --------
T ss_pred cCcCCCCC
Confidence 36666664
No 108
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=0.34 Score=53.02 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=38.9
Q ss_pred Cccccccccccccc--cccceeccCCCccChhhHHHHhhc-CCCCCCccccc
Q 003343 343 KQVCGICLSEEDKR--RLRGTLNCCSHYFCFTCIMEWSKV-ESRCPLCKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~--~~~~~l~~CgH~FC~~CI~~w~~~-~~~CP~CR~~~ 391 (828)
-..|-||-+.|... ...|.++.|||.||..|+...+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 36799999998643 457888889999999999766543 45699999875
No 109
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=0.19 Score=54.89 Aligned_cols=47 Identities=30% Similarity=0.726 Sum_probs=33.7
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTIT 395 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~ 395 (828)
-.|--|--.+. +.+.+++|.|+||+.|...- ....||.|-.++..|.
T Consensus 91 HfCd~Cd~PI~---IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 91 HFCDRCDFPIA---IYGRMIPCKHVFCLECARSD--SDKICPLCDDRVQRIE 137 (389)
T ss_pred EeecccCCcce---eeecccccchhhhhhhhhcC--ccccCcCcccHHHHHH
Confidence 45777755542 45788899999999997532 3567999987666554
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.88 E-value=0.19 Score=40.57 Aligned_cols=44 Identities=32% Similarity=0.768 Sum_probs=25.2
Q ss_pred ccccccccccccccccceeccCC-CccChhhHHHHhhcCCCCCCccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCS-HYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~Cg-H~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
..|--|.-.. .-++.|. |+.|..|+...+..+..||+|..++.+
T Consensus 3 ~nCKsCWf~~------k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFAN------KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S--------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ccChhhhhcC------CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3466666553 2344576 999999999999999999999876643
No 111
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=87.49 E-value=0.24 Score=49.97 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=34.7
Q ss_pred ccccccc---CCCCcccccccccccccccccCCCC-------CCCCCCC--cccCCCCCC
Q 003343 438 ICSECHQ---GGDDGLMLLCDICDSSAHTYCVGLG-------RVVPEGN--WYCDGCRPV 485 (828)
Q Consensus 438 ~C~vC~~---~~~~~~~llCd~Cd~~~H~~CL~p~-------~~vP~g~--W~Cp~C~~~ 485 (828)
.|.+|+. ......|++|.+|-.+||..||++. +.|...+ ..|..|+..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 3788854 3334679999999999999999985 1233334 469999764
No 112
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=0.5 Score=49.58 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=39.0
Q ss_pred hcccCCccccccccccccccccceeccCCCccChhhHHHHhhc--------CCCCCCccccccc
Q 003343 338 KSEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--------ESRCPLCKQRFKT 393 (828)
Q Consensus 338 ~~e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--------~~~CP~CR~~~~~ 393 (828)
......-.|..|--.+..+ ..+-+.|-|.||+.|+..|.-. ...||.|...+-.
T Consensus 45 ~DsDY~pNC~LC~t~La~g--dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASG--DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred hhcCCCCCCceeCCccccC--cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3344567899998877533 4566679999999999999743 1349999876643
No 113
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=0.28 Score=52.72 Aligned_cols=138 Identities=18% Similarity=0.296 Sum_probs=72.8
Q ss_pred Ccccccccc-ccccccccceeccCCCccChhhHHHHhh--------c-------CCCCCCccccccccccCCCCc-cccc
Q 003343 343 KQVCGICLS-EEDKRRLRGTLNCCSHYFCFTCIMEWSK--------V-------ESRCPLCKQRFKTITKPERST-AGVD 405 (828)
Q Consensus 343 ~~~C~ICle-~~~~~~~~~~l~~CgH~FC~~CI~~w~~--------~-------~~~CP~CR~~~~~i~~~~~~~-~gv~ 405 (828)
...|++|.. .+.-.....++.+|++.||..|..-|.. . ...||.|+-......+....+ +...
T Consensus 95 ~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~~k~t~~~h~as~~~l~~~~~~i~l~~~~~e~~~dlt~~~l~ 174 (271)
T COG5574 95 EETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSIDLKQTANTHEASPSQLLKFLPTIRLAMNIPEVISDLTAVALS 174 (271)
T ss_pred ccccccccCcccccccccceeeecccccchhhhHHHHHHHHHhhcCCCCCHHHHhccCCeeecccCChHHHHHHHHHHHh
Confidence 467888888 3322233567778999999999998876 1 133777776554433221100 0001
Q ss_pred cc-ceeeccccccccc-----CCchhhhh--cc--cCCCCcccccccccCCCCcccccccccccccccccCCCCCCCCCC
Q 003343 406 LR-SVVIQVPERDQVY-----QPSEEDLR--SF--LDPYENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEG 475 (828)
Q Consensus 406 l~-~~viqvperdq~~-----~~seEel~--~~--ld~~e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g 475 (828)
+. ....++......+ .-+.+.+. .. .-+.....|.+|-.... ...|-.|+.-||+.||-.. +-.-
T Consensus 175 l~~sr~~~i~q~sn~~~~~~q~Itken~s~kn~~pfip~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~--~t~~ 249 (271)
T COG5574 175 LDESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIPLADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLIS--WTKK 249 (271)
T ss_pred cCchhcCccccccCCcccceeecccccccccccCCcccccccceeeeecccC---CcccccccchhhHHHHHHH--HHhh
Confidence 11 0001111100000 00001000 00 11233567999977654 5678899999999998763 1111
Q ss_pred -CcccCCCCCC
Q 003343 476 -NWYCDGCRPV 485 (828)
Q Consensus 476 -~W~Cp~C~~~ 485 (828)
--+||-|+..
T Consensus 250 k~~~CplCRak 260 (271)
T COG5574 250 KYEFCPLCRAK 260 (271)
T ss_pred ccccCchhhhh
Confidence 2479999985
No 114
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=86.94 E-value=0.3 Score=56.21 Aligned_cols=50 Identities=34% Similarity=0.792 Sum_probs=37.9
Q ss_pred ccccccccC--CCCcccccccccccccccccCCCC--CCCCC-------CCcccCCCCCCC
Q 003343 437 VICSECHQG--GDDGLMLLCDICDSSAHTYCVGLG--RVVPE-------GNWYCDGCRPVA 486 (828)
Q Consensus 437 ~~C~vC~~~--~~~~~~llCd~Cd~~~H~~CL~p~--~~vP~-------g~W~Cp~C~~~~ 486 (828)
.+|.||-.. .+-..++.|+.|+-.+|-.|.+.. ..||. ..|||-.|+.+.
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 478899543 334458999999999999999965 44553 359999998853
No 115
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.86 E-value=0.34 Score=52.79 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
....||||.+.+......+..++|+|..|+.|+........+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345599999998766667788889999999999988776688999976
No 116
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=0.39 Score=48.69 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=34.1
Q ss_pred Cccccccccccccccc---cceeccCCCccChhhHHHHhhcC-----------CCCCCcccccc
Q 003343 343 KQVCGICLSEEDKRRL---RGTLNCCSHYFCFTCIMEWSKVE-----------SRCPLCKQRFK 392 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~---~~~l~~CgH~FC~~CI~~w~~~~-----------~~CP~CR~~~~ 392 (828)
-..|.||+-+--.++. .+--..||..||.-|+..|+..- ..||-|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4569999876322211 22234699999999999999642 23999987664
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=0.3 Score=52.15 Aligned_cols=55 Identities=20% Similarity=0.661 Sum_probs=41.1
Q ss_pred cCCccccccccccccccccceeccCC-----CccChhhHHHHhhcC--------CCCCCccccccccc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--------SRCPLCKQRFKTIT 395 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~~--------~~CP~CR~~~~~i~ 395 (828)
+.+..|=||+..-.+.....++-||. |+.|..||..|...+ .+||.|++.+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 35678999999865444455777774 899999999998532 34999998876543
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.46 E-value=0.31 Score=44.75 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=25.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHH
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
....|+||...+... .-++.||||.||+.|+.
T Consensus 77 ~~~~C~vC~k~l~~~--~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS--VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc--eEEEeCCCeEEeccccc
Confidence 357799999998643 44666899999999974
No 119
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=86.44 E-value=0.42 Score=59.01 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=3.9
Q ss_pred CCccccccc
Q 003343 233 DDDDDINFI 241 (828)
Q Consensus 233 ddedDdDfi 241 (828)
.++++.|.|
T Consensus 145 ~~~~~~d~I 153 (1024)
T KOG1999|consen 145 GDDEDSDDI 153 (1024)
T ss_pred cchhcccch
Confidence 333444444
No 120
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=86.23 E-value=0.56 Score=58.78 Aligned_cols=8 Identities=0% Similarity=0.281 Sum_probs=2.9
Q ss_pred HHHhhccc
Q 003343 575 IQNLLSMN 582 (828)
Q Consensus 575 i~~~~s~~ 582 (828)
+..++..|
T Consensus 686 l~~~~~l~ 693 (840)
T PF04147_consen 686 LDRFADLY 693 (840)
T ss_pred HHHHHHHH
Confidence 33333333
No 121
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.09 E-value=0.41 Score=52.81 Aligned_cols=53 Identities=19% Similarity=0.523 Sum_probs=34.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhh-cCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-VESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-~~~~CP~CR~~~~~i 394 (828)
++..||.|++.+.-....-..-+||...|.-|...-.+ -...||.||..+...
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 44669999999752222223335998888888432222 356799999877653
No 122
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.61 E-value=0.74 Score=46.18 Aligned_cols=33 Identities=27% Similarity=0.631 Sum_probs=22.2
Q ss_pred CccccccccccccccccceeccCC-------------CccChhhHHHHhh
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCS-------------HYFCFTCIMEWSK 379 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~Cg-------------H~FC~~CI~~w~~ 379 (828)
+.+|||||+.-- .+||+-|. -.-|..||.++.+
T Consensus 2 d~~CpICme~PH----NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPH----NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCC----ceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 478999999854 45666553 2345678886653
No 123
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.45 E-value=0.43 Score=58.22 Aligned_cols=45 Identities=31% Similarity=0.766 Sum_probs=35.0
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhc--CCCCCCccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV--ESRCPLCKQRFKT 393 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~--~~~CP~CR~~~~~ 393 (828)
..|.||++ .. .+++..|+|.||..|+...... ...||.|+..+..
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 33 5788899999999999865543 2359999865543
No 124
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=83.82 E-value=0.53 Score=58.87 Aligned_cols=45 Identities=36% Similarity=0.752 Sum_probs=40.5
Q ss_pred ccccccccCCCCcccccccccccccccccCCCC-CCCCCCCcccCCCCC
Q 003343 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLG-RVVPEGNWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~-~~vP~g~W~Cp~C~~ 484 (828)
..|.+|+..+. +++|..|++-||..|+.+| ..+|.-.|.|--|..
T Consensus 345 dhcrf~~d~~~---~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 345 DHCRFCHDLGD---LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred ccccccCcccc---eeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 46889988877 8999999999999999999 889999999999974
No 125
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.60 E-value=0.72 Score=44.96 Aligned_cols=56 Identities=27% Similarity=0.709 Sum_probs=41.4
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHH-HHh--hcCCCCCCccccccccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM-EWS--KVESRCPLCKQRFKTIT 395 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~-~w~--~~~~~CP~CR~~~~~i~ 395 (828)
+..-..|-||.+...+..+..--.+||...|..|-. -|- ...+.||+|++.|....
T Consensus 77 d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 77 DPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 334578999999876555444445699999999966 464 34677999999997754
No 126
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=83.35 E-value=0.31 Score=60.82 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccCCccccccccccccccccceeccCCCccChhhHHHHhh----cCCCCCCccccccccccCCCCccccc-ccceeeccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK----VESRCPLCKQRFKTITKPERSTAGVD-LRSVVIQVP 414 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~----~~~~CP~CR~~~~~i~~~~~~~~gv~-l~~~viqvp 414 (828)
..-+..|.+|.+... ...+-.|+..||..|...=.. ..+.|-+|+. +.+. ....++. ..+.+..|.
T Consensus 341 ~~~ddhcrf~~d~~~----~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkvn---gvvd~vl~~~K~~~~iR 411 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGD----LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKVN---GVVDCVLPPSKNVDSIR 411 (1414)
T ss_pred eeecccccccCcccc----eeecccCCceEEeeecCCccccCCCccchhhhhhh--hccC---cccccccChhhccccee
Confidence 334678999998854 344556899999999863221 2345888862 1111 0000000 000000000
Q ss_pred ccccccCCchhhhhcccCCCCcccccccccCCCCcccccccc-ccccccc-ccCCCC---CCCCCCCcccCCCCCCCC
Q 003343 415 ERDQVYQPSEEDLRSFLDPYENVICSECHQGGDDGLMLLCDI-CDSSAHT-YCVGLG---RVVPEGNWYCDGCRPVAL 487 (828)
Q Consensus 415 erdq~~~~seEel~~~ld~~e~~~C~vC~~~~~~~~~llCd~-Cd~~~H~-~CL~p~---~~vP~g~W~Cp~C~~~~~ 487 (828)
- +..... ..-+.|+ +..-.|.+|+. ++.+++|.+ |...||+ .||+-. ..++.+-|+|+.|.....
T Consensus 412 ~--~~iG~d-r~gr~yw--fi~rrl~Ie~~---det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 412 H--TPIGRD-RYGRKYW--FISRRLRIEGM---DETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred c--cCCCcC-ccccchh--ceeeeeEEecC---CCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 0 000000 0001111 12345777874 345899998 9999999 999932 578999999999976533
No 127
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=83.18 E-value=1.1 Score=53.65 Aligned_cols=119 Identities=21% Similarity=0.368 Sum_probs=60.3
Q ss_pred eccCCCccChhhHHHHhhcCCCCCCccccccccccCCCCccccccccee--ecccccccccCCchhhhhcccCCC--Ccc
Q 003343 362 LNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKPERSTAGVDLRSVV--IQVPERDQVYQPSEEDLRSFLDPY--ENV 437 (828)
Q Consensus 362 l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i~~~~~~~~gv~l~~~v--iqvperdq~~~~seEel~~~ld~~--e~~ 437 (828)
.++=|-+||..|-..-......|-+|-.....+.+..+. .+-.+| +.||+..-.-..+.|.+.-.+-+. -+.
T Consensus 43 qVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~----GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnK 118 (900)
T KOG0956|consen 43 QVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNG----GWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNK 118 (900)
T ss_pred ecCCCchhhhhhhhhhhhccceeecccCcccceecccCC----CceEEEEEeeccceeecccccccceeeccCchhhhcc
Confidence 334567888888654444456799996665555433221 111222 234442211122223321111111 245
Q ss_pred cccccccCCCC--c---cccccc--ccccccccccCCC---C-CCC-C--CCCcccCCCCC
Q 003343 438 ICSECHQGGDD--G---LMLLCD--ICDSSAHTYCVGL---G-RVV-P--EGNWYCDGCRP 484 (828)
Q Consensus 438 ~C~vC~~~~~~--~---~~llCd--~Cd~~~H~~CL~p---~-~~v-P--~g~W~Cp~C~~ 484 (828)
.|.+|...+.+ . ..+.|. +|..+||..|-.. . ++- - +.--||-.|..
T Consensus 119 tCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 119 TCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKY 179 (900)
T ss_pred eeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHH
Confidence 68899765432 2 244455 3677899999763 2 211 1 22359999964
No 128
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.23 E-value=0.41 Score=60.72 Aligned_cols=45 Identities=38% Similarity=0.843 Sum_probs=37.5
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
.-..|.||++.+.. .+-+..|||.||..|+..|+..+..||.|+.
T Consensus 1152 ~~~~c~ic~dil~~---~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN---QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHh---cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34689999999752 2345569999999999999999999999984
No 129
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=0.67 Score=56.68 Aligned_cols=43 Identities=26% Similarity=0.571 Sum_probs=32.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~ 391 (828)
...|.+|--.+. +..|--.|||.||..|+. .....||.|+...
T Consensus 840 ~skCs~C~~~Ld---lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLD---LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccc---cceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 358999988875 223445699999999997 4556799998633
No 130
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.18 E-value=0.87 Score=50.42 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=35.0
Q ss_pred CCccccccccccccccccceeccC--CCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCC--SHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~C--gH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.-+.||||.+.+. .| +..| ||.-|..|-. +..+.||.|+.++..+
T Consensus 47 ~lleCPvC~~~l~----~P-i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS----PP-IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCc----cc-ceecCCCcEehhhhhh---hhcccCCccccccccH
Confidence 4578999999987 34 4458 5999999964 5678899999888644
No 131
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=80.87 E-value=1.3 Score=35.07 Aligned_cols=41 Identities=22% Similarity=0.522 Sum_probs=21.2
Q ss_pred ccccccccccccccceeccCCCccChhhHHHHhhcCC--CCCCc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVES--RCPLC 387 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~--~CP~C 387 (828)
|.+|.+.+..+ ....-..|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G-~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG-QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS-EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee-ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 77888886522 1122224888999999998876543 69988
No 132
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.46 E-value=1 Score=55.53 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.3
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHH
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEW 377 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w 377 (828)
....|.+|.-.+... .-.+.+|||.||..||...
T Consensus 816 p~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhcC--cceeeeccchHHHHHHHHH
Confidence 457899999987533 2356679999999999744
No 133
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=79.26 E-value=0.52 Score=51.99 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=30.3
Q ss_pred ccccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCC
Q 003343 437 VICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
..|..|+..........|..|..-||.+|-..- -+.--.||.|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~i---HesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFI---HESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHH---HhhhhcCCCcCC
Confidence 469999655444446778889888888885432 223358999974
No 134
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.86 E-value=0.78 Score=54.45 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=34.7
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
..|.||+..|-.....++.+.|||+.|..|+..- ...+|| |.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~ 53 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TK 53 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CC
Confidence 6799999998777788999999999999999754 345688 54
No 135
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=77.43 E-value=1.9 Score=42.99 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=23.7
Q ss_pred cCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 003343 516 VSFGEGFDPYSVSSPRIPLTPGSGNLSS 543 (828)
Q Consensus 516 ~~~~~~ldp~l~~~pr~~~~~~~~~~~s 543 (828)
+|+. ||+|||..+|.+.|.|+.|....
T Consensus 2 ~H~~-CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 2 FHLC-CLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred cccc-cCCCCCCCCCCCCcCCCCCcCCC
Confidence 5666 99999999999999999999544
No 136
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=76.87 E-value=1.1 Score=41.19 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=8.0
Q ss_pred CCCCcchhhHHhhh
Q 003343 95 EGEDEDEEEEVDVR 108 (828)
Q Consensus 95 edEdeDeeeee~~~ 108 (828)
.++..|+++-++..
T Consensus 55 ~d~~LDedDldLi~ 68 (92)
T PF14632_consen 55 EDDRLDEDDLDLIE 68 (92)
T ss_pred hhhhcCHHHHHHHH
Confidence 44556666666655
No 137
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=76.51 E-value=1.9 Score=53.56 Aligned_cols=9 Identities=0% Similarity=-0.042 Sum_probs=4.2
Q ss_pred cccCCCCCC
Q 003343 477 WYCDGCRPV 485 (828)
Q Consensus 477 W~Cp~C~~~ 485 (828)
.||..|...
T Consensus 623 v~vck~k~~ 631 (1024)
T KOG1999|consen 623 VFVCKEKNL 631 (1024)
T ss_pred eEEEecCCc
Confidence 444445443
No 138
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.42 E-value=2.3 Score=37.89 Aligned_cols=54 Identities=24% Similarity=0.503 Sum_probs=20.6
Q ss_pred cCCcccccccccccc---ccccceeccCCCccChhhHHH-HhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~~-w~~~~~~CP~CR~~~~~i 394 (828)
.....|.||.+.+.- +....-+.-|+--.|..|..- .......||.|+++|...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 356899999998631 112222334888899999873 334566799999888654
No 139
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=74.50 E-value=0.81 Score=52.16 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=18.8
Q ss_pred CCccccccccccccccccceeccCCCccChhhHHHHh
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~ 378 (828)
.-++|.+|...+....+.. .=+..||-.|.+..+
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~---v~~k~~CE~cyq~tl 334 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQ---VDGKPYCEGCYQDTL 334 (468)
T ss_pred cceehHhhhhhhccccccc---cCCcccchHHHHHHH
Confidence 3577888877765332211 124566666665443
No 140
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=73.59 E-value=3.5 Score=41.86 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.1
Q ss_pred CcccccccccccccccccCCCC
Q 003343 448 DGLMLLCDICDSSAHTYCVGLG 469 (828)
Q Consensus 448 ~~~~llCd~Cd~~~H~~CL~p~ 469 (828)
+.+|+-|..|.++||+..|-++
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred hheEEecCCccceeehhhCCCC
Confidence 4568889999999999999875
No 141
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.40 E-value=2.4 Score=46.36 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=34.4
Q ss_pred cccccccc-cccccccceeccCCCccChhhHHHHh-hcCCCCCCccccc
Q 003343 345 VCGICLSE-EDKRRLRGTLNCCSHYFCFTCIMEWS-KVESRCPLCKQRF 391 (828)
Q Consensus 345 ~C~ICle~-~~~~~~~~~l~~CgH~FC~~CI~~w~-~~~~~CP~CR~~~ 391 (828)
.||+|... |....+...+-+|+|..|-.|+..-. .....||.|....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 59999875 33344555555899999999998654 4567799997644
No 142
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=1.7 Score=49.78 Aligned_cols=52 Identities=31% Similarity=0.829 Sum_probs=34.1
Q ss_pred cCCccccccc-cccccccccceeccCCCccChhhHHHHhhcC------CCCCC--ccccccc
Q 003343 341 VAKQVCGICL-SEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE------SRCPL--CKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICl-e~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~------~~CP~--CR~~~~~ 393 (828)
.....|.||+ +......... +..|+|.||..|+.+...+. ..||. |...+..
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 3467899999 4433222233 56699999999999776543 45764 6555543
No 143
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=72.47 E-value=1.1 Score=35.91 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=29.3
Q ss_pred cccccccccccccccceeccCCCccChhhHHHHhh------cCCCCCCccc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK------VESRCPLCKQ 389 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~------~~~~CP~CR~ 389 (828)
.|.||..... .........|+..||..|+..-.. ..+.||.|+.
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889988432 333445556999999999873221 2567998853
No 144
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=71.68 E-value=1.1 Score=54.12 Aligned_cols=45 Identities=33% Similarity=0.620 Sum_probs=35.2
Q ss_pred CccccccccccccccccceeccCCCccChhhHH---HHhhcCCCCCCccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM---EWSKVESRCPLCKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~---~w~~~~~~CP~CR~~~ 391 (828)
...|+||+..+. .++++.|.|.||..|+. .|.+....||+|+...
T Consensus 21 ~lEc~ic~~~~~----~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVK----EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEee----ccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 478999999976 56888999999999986 3333456699998543
No 145
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.90 E-value=2.3 Score=35.44 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=26.6
Q ss_pred CcccccccccCC-CCcccccccccccccccccCCC
Q 003343 435 ENVICSECHQGG-DDGLMLLCDICDSSAHTYCVGL 468 (828)
Q Consensus 435 e~~~C~vC~~~~-~~~~~llCd~Cd~~~H~~CL~p 468 (828)
....|.+|+..- ...-++.|..|...||..|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456899998753 2344889999999999999754
No 146
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=69.27 E-value=13 Score=43.98 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=2.9
Q ss_pred Cccccccc
Q 003343 234 DDDDINFI 241 (828)
Q Consensus 234 dedDdDfi 241 (828)
|+++++..
T Consensus 340 Deedd~ee 347 (555)
T KOG2393|consen 340 DEEDDLEE 347 (555)
T ss_pred ccccCccc
Confidence 33333333
No 147
>PLN03237 DNA topoisomerase 2; Provisional
Probab=69.20 E-value=5.8 Score=52.14 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=5.8
Q ss_pred CCCCcCCCCCCCcc
Q 003343 266 SDSDFVSSGSSDYE 279 (828)
Q Consensus 266 sdsd~~~s~ssdyE 279 (828)
+++++.+.+++|++
T Consensus 1448 ~~~e~~~~d~~df~ 1461 (1465)
T PLN03237 1448 SDSESESADDSDFD 1461 (1465)
T ss_pred cCcccccccccccc
Confidence 44444433444433
No 148
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=68.80 E-value=2.3 Score=51.66 Aligned_cols=10 Identities=0% Similarity=-0.310 Sum_probs=6.0
Q ss_pred CCCCCCCCCC
Q 003343 531 RIPLTPGSGN 540 (828)
Q Consensus 531 r~~~~~~~~~ 540 (828)
...|...||.
T Consensus 445 ~~~~~~nF~~ 454 (622)
T PF02724_consen 445 EESWVDNFWR 454 (622)
T ss_pred cccHHHHHHH
Confidence 3456666666
No 149
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=2.3 Score=46.26 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=26.4
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV 380 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~ 380 (828)
.+.|.+|.+.+.+..++-.-..=.|.|||.|-...++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 48999999998754332222222599999998776653
No 150
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.04 E-value=2.8 Score=43.96 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=37.9
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
-..|.+|...... ...+-.|+-.||..|+..++.....||.|+.-++..
T Consensus 181 lk~Cn~Ch~LvIq---g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ---GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTHP 229 (235)
T ss_pred HHHHhHhHHHhhe---eeccCcccchhhhHHHHHHhcccCcCCchhcccCcc
Confidence 3579999998531 123556888899999999999999999998766554
No 151
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=3.6 Score=52.04 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=21.7
Q ss_pred cccchhh----HHhHHHHHHHHHHhccCCccccccCC
Q 003343 796 MKSHCSS----CFDSFIKDVVKRIMDTRLPQWLSLGL 828 (828)
Q Consensus 796 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (828)
|-|.|-+ |--.|-+-|.+.||- +.--|+.+|+
T Consensus 2751 IlGiCL~Qgdi~PirfnRHifk~iL~-l~icW~Df~F 2786 (3015)
T KOG0943|consen 2751 ILGICLLQGDICPIRFNRHIFKVILG-LKICWHDFAF 2786 (3015)
T ss_pred HhhhhhhcCcccceeehhHHHHHHhc-Cceehhhhcc
Confidence 3455543 556688889999885 4557888763
No 152
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=64.04 E-value=3.8 Score=50.11 Aligned_cols=50 Identities=28% Similarity=0.777 Sum_probs=37.4
Q ss_pred CCccccccccccccccccceeccCC-----CccChhhHHHHhhcC--CCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVE--SRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~~--~~CP~CR~~~~~ 393 (828)
+...|.||...-..+ .|...||. .+.|..|+..|+... ..|-+|..++..
T Consensus 11 d~~~CRICr~e~~~d--~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRD--DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCC--CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 347899999874433 56666665 568999999999754 459999877654
No 153
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=62.57 E-value=2.1 Score=45.49 Aligned_cols=53 Identities=23% Similarity=0.592 Sum_probs=35.1
Q ss_pred ccCCcccccccccc-ccccccceecc-CCCccChhhHHHHh-hcCCCCC--Ccccccc
Q 003343 340 EVAKQVCGICLSEE-DKRRLRGTLNC-CSHYFCFTCIMEWS-KVESRCP--LCKQRFK 392 (828)
Q Consensus 340 e~~~~~C~ICle~~-~~~~~~~~l~~-CgH~FC~~CI~~w~-~~~~~CP--~CR~~~~ 392 (828)
...+..||||.... -...+...+.| |-|..|-+|+.+-+ .....|| -|.+-+.
T Consensus 7 ~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 34457999999863 22222223333 99999999998765 4567799 7876443
No 154
>PLN02189 cellulose synthase
Probab=60.02 E-value=6.3 Score=50.05 Aligned_cols=54 Identities=33% Similarity=0.604 Sum_probs=36.7
Q ss_pred cCCcccccccccccc---ccccceeccCCCccChhhHH-HHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~-~w~~~~~~CP~CR~~~~~i 394 (828)
.....|.||.+.+.- +..-..+.-|+--.|..|.. ........||.|++++...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 356799999998641 11122233488889999995 2334567799999998743
No 155
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=59.87 E-value=5.2 Score=48.73 Aligned_cols=6 Identities=17% Similarity=0.700 Sum_probs=2.7
Q ss_pred cccccc
Q 003343 387 CKQRFK 392 (828)
Q Consensus 387 CR~~~~ 392 (828)
|++.|.
T Consensus 353 ~~Q~y~ 358 (622)
T PF02724_consen 353 AQQKYS 358 (622)
T ss_pred HcCCch
Confidence 444443
No 156
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.70 E-value=4.5 Score=42.61 Aligned_cols=39 Identities=28% Similarity=0.600 Sum_probs=28.5
Q ss_pred ccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCcccccc
Q 003343 346 CGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 346 C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
|-+|.+.-. ..+++||.|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~----~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREA----TVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCc----eEEeecccceEeccccccc----CccCCCCcChhh
Confidence 999988742 3567789966 99999533 445999986543
No 157
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=58.23 E-value=7.4 Score=49.62 Aligned_cols=54 Identities=28% Similarity=0.533 Sum_probs=36.8
Q ss_pred cCCcccccccccccc---ccccceeccCCCccChhhHH-HHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~-~w~~~~~~CP~CR~~~~~i 394 (828)
.....|.||.+.+.- +..---+.-|+--.|..|.. +....+..||.|++++...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 356799999998631 11112233477779999996 3344567799999998744
No 158
>PLN02436 cellulose synthase A
Probab=57.04 E-value=7.7 Score=49.40 Aligned_cols=53 Identities=30% Similarity=0.544 Sum_probs=35.9
Q ss_pred CCcccccccccccc---ccccceeccCCCccChhhHHH-HhhcCCCCCCcccccccc
Q 003343 342 AKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIME-WSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~~-w~~~~~~CP~CR~~~~~i 394 (828)
....|.||.+.+.- +..---+.-|+--.|..|..- .......||.|++++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 55799999998631 112222334778899999952 334567799999998743
No 159
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.02 E-value=6.3 Score=47.17 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=38.3
Q ss_pred cccccccccCCCCcccccccccccccccccCCCC--CCCCCCCcccCCCCC
Q 003343 436 NVICSECHQGGDDGLMLLCDICDSSAHTYCVGLG--RVVPEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~--~~vP~g~W~Cp~C~~ 484 (828)
...|.+|..+++ ++.|+.|+.++|..|.+++ ...+-+.|.|..|-.
T Consensus 47 ~ts~~~~~~~gn---~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGN---LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCC---ccccccCccccchhccCcccCcccccccccccCCCc
Confidence 457899988887 8999999999999999987 445556788888865
No 160
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=55.62 E-value=7.8 Score=32.42 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=32.3
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCC--ccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL--CKQRF 391 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~--CR~~~ 391 (828)
...|++|...|.....+-+++.|+-.||+.|-.. ...|-. |...|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCc
Confidence 4689999999965555677888999999999432 334554 55443
No 161
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=55.20 E-value=13 Score=33.98 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhccccCCCchhHHHhhhhhhhHHHhh
Q 003343 725 EQLQSVVKSHLKNLSRDIQLDPSTFKDIAGSSTHTILAA 763 (828)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (828)
--|-+.|...|+..... |+.+.||-+||--||+|++-
T Consensus 11 ~~l~~~V~~~l~~y~~~--~~~ddfK~~ar~lt~~l~~K 47 (88)
T PF08236_consen 11 KTLAKHVVNLLNKYRKK--LSKDDFKHLARKLTHKLVEK 47 (88)
T ss_dssp HHHHHHHHHHHCTTTTT----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc--CCHHHHHHHHHHHHHHHHHH
Confidence 35667788888877776 99999999999999999885
No 162
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=55.09 E-value=10 Score=46.46 Aligned_cols=47 Identities=28% Similarity=0.630 Sum_probs=34.8
Q ss_pred ccccccccCCCCccccccccccccc-ccccCCCCCCCCCCCcccCCCCC
Q 003343 437 VICSECHQGGDDGLMLLCDICDSSA-HTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~~-H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
.+|..|+.... ....||..|+..+ +..|-.....+|.+.-||+.|-.
T Consensus 2 ~~Cp~Cg~~n~-~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENP-NNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCC-CCCccccccCCCCCCCcCCCCCCCCCcccccccccCC
Confidence 47888887643 3367899999774 46776655678888889999965
No 163
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.16 E-value=1.5 Score=49.41 Aligned_cols=51 Identities=14% Similarity=0.380 Sum_probs=39.9
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
..|.||...+...-.....+.|||.||..||..|+.....||.|+..+..+
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 469999887642212345667999999999999999888899999876554
No 164
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=53.96 E-value=3.9 Score=29.60 Aligned_cols=28 Identities=32% Similarity=0.737 Sum_probs=12.2
Q ss_pred cccccccCCCCccccccccccccccccc
Q 003343 438 ICSECHQGGDDGLMLLCDICDSSAHTYC 465 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~C 465 (828)
.|.+|+..........|..|+-.+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5889988776556889999999999887
No 165
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=6.4 Score=45.22 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=33.0
Q ss_pred cCCccccccccccccc--cccceeccCCCccChhhHHHHhhcCCCCCCc
Q 003343 341 VAKQVCGICLSEEDKR--RLRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~--~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~C 387 (828)
.....|++|.-.+... -...++. |+|.||+.|...|......|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3457899998876432 2234444 99999999999998777667655
No 166
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=7.2 Score=49.58 Aligned_cols=6 Identities=50% Similarity=0.368 Sum_probs=2.6
Q ss_pred CCCCCc
Q 003343 560 AGAPTL 565 (828)
Q Consensus 560 ~gf~t~ 565 (828)
+||.|.
T Consensus 2417 a~FEtK 2422 (3015)
T KOG0943|consen 2417 AGFETK 2422 (3015)
T ss_pred hccchH
Confidence 444444
No 167
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=53.69 E-value=6.1 Score=43.14 Aligned_cols=52 Identities=25% Similarity=0.623 Sum_probs=37.1
Q ss_pred CccccccccccccccccceeccCC-----CccChhhHHHHhh--cCCCCCCcccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSK--VESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~--~~~~CP~CR~~~~~i 394 (828)
...|.||+.........+...+|. +..|..|+..|.. ....|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 478999999754221114555665 6789999999997 456699998766554
No 168
>PLN02400 cellulose synthase
Probab=53.49 E-value=8.3 Score=49.19 Aligned_cols=54 Identities=26% Similarity=0.541 Sum_probs=36.9
Q ss_pred cCCcccccccccccc---ccccceeccCCCccChhhHH-HHhhcCCCCCCcccccccc
Q 003343 341 VAKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 341 ~~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~-~w~~~~~~CP~CR~~~~~i 394 (828)
.....|.||.+.+.- +..-.-+.-|+--.|..|.. +.......||.|++++...
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 356799999998631 11222333477779999985 3334566799999998754
No 169
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=53.21 E-value=6.7 Score=50.09 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=30.5
Q ss_pred cCCcccccccccccc-ccccceeccCCCccChhhHH-HH-hhcCCCCCCccc
Q 003343 341 VAKQVCGICLSEEDK-RRLRGTLNCCSHYFCFTCIM-EW-SKVESRCPLCKQ 389 (828)
Q Consensus 341 ~~~~~C~ICle~~~~-~~~~~~l~~CgH~FC~~CI~-~w-~~~~~~CP~CR~ 389 (828)
.++..|.||++.-.. ...+..+..|+-.+|+.|.. .. ....+.|-.|-.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhcc
Confidence 456899999997431 23345666788888888865 11 123345666644
No 170
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=52.93 E-value=4.7 Score=36.68 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=30.8
Q ss_pred cccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
.|..|..+++.-.++++. |...||+.|+.--..-...+-.||.|+..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCCccCCCCCCceeecc-CccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 456677666544444444 99999999987421122345699999974
No 171
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=52.50 E-value=7.6 Score=44.14 Aligned_cols=28 Identities=25% Similarity=0.936 Sum_probs=20.3
Q ss_pred CccChhhHHHHhhc-------------CCCCCCcccccccc
Q 003343 367 HYFCFTCIMEWSKV-------------ESRCPLCKQRFKTI 394 (828)
Q Consensus 367 H~FC~~CI~~w~~~-------------~~~CP~CR~~~~~i 394 (828)
-..|..||.+|.-. +..||+||+.|-..
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 44588999988732 34599999988543
No 172
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.30 E-value=9.3 Score=42.70 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=37.7
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFK 392 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~ 392 (828)
..|+||.+.........+..+|++..|+.|+..-.....+||.||+++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6799999986433333444568899999999888888899999996554
No 173
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.87 E-value=11 Score=46.01 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=33.4
Q ss_pred CCcccccc-ccccccccccceeccCCCccChhhHHHHh--hcCCCCCCcccccccc
Q 003343 342 AKQVCGIC-LSEEDKRRLRGTLNCCSHYFCFTCIMEWS--KVESRCPLCKQRFKTI 394 (828)
Q Consensus 342 ~~~~C~IC-le~~~~~~~~~~l~~CgH~FC~~CI~~w~--~~~~~CP~CR~~~~~i 394 (828)
...+|.|| .+.+. ...+..|.|.+|..|..... .....|+.| .+|..+
T Consensus 77 ~e~~~~if~~d~~~----y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c-~~~~s~ 127 (669)
T KOG2231|consen 77 HEDTCVIFFADKLT----YTKLEACLHHSCHICDRRFRALYNKKECLHC-TEFKSV 127 (669)
T ss_pred ccceeeeeeccccH----HHHHHHHHhhhcCccccchhhhcccCCCccc-cchhHH
Confidence 45789999 44433 34566799999999987553 345679999 766554
No 174
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.84 E-value=6.1 Score=37.27 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=32.3
Q ss_pred cccccccccCCCCcccccc------ccc---ccccccccCCCC------CCCCCCCcccCCCCC
Q 003343 436 NVICSECHQGGDDGLMLLC------DIC---DSSAHTYCVGLG------RVVPEGNWYCDGCRP 484 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llC------d~C---d~~~H~~CL~p~------~~vP~g~W~Cp~C~~ 484 (828)
-..|..|.....+. .+.| ..| ...|+..||.-. ..+...+|.||.|+.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34688887654433 3456 556 777999998632 234567899999986
No 175
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=51.00 E-value=4.6 Score=44.37 Aligned_cols=44 Identities=27% Similarity=0.584 Sum_probs=22.1
Q ss_pred Cccccccccccccccccceecc-----CCCccChhhHHHHhhcCCCCCCcccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNC-----CSHYFCFTCIMEWSKVESRCPLCKQR 390 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~-----CgH~FC~~CI~~w~~~~~~CP~CR~~ 390 (828)
...||||...-. ..++.. =-|.+|..|-..|.-....||.|...
T Consensus 172 ~g~CPvCGs~P~----~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPV----LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EE----EEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCc----eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 368999998743 122222 24789999999998888899999753
No 177
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=49.13 E-value=11 Score=31.15 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=21.8
Q ss_pred ccccccccccc------cccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 346 CGICLSEEDKR------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 346 C~ICle~~~~~------~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
|--|+..|... ...-....|++.||..|=.--.+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55566666422 12345667999999999544444556799884
No 178
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=47.36 E-value=14 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.530 Sum_probs=19.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhh-----cCCCCCCcccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSK-----VESRCPLCKQR 390 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~-----~~~~CP~CR~~ 390 (828)
+.|+|....+. .......|.|.-|++= ..|+. ..+.||+|+++
T Consensus 3 L~CPls~~~i~---~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR---IPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S---SEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE---eCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 67999988875 2234556999977653 34442 34679999863
No 179
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=47.09 E-value=18 Score=42.32 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=68.4
Q ss_pred CcccccccccCC--CCcccccccccccccccccCCCCCCCCCCCcccCCCCCCCCC---CC-----CC------------
Q 003343 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALG---SS-----SS------------ 492 (828)
Q Consensus 435 e~~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g---~~-----~~------------ 492 (828)
....|.+|.... .+..+..|..|..+||..|-.|. ..-.+.|.|..|+.+.+- .. ..
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~-~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~ 160 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPR-FPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLD 160 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccC-cCcCCccccccccccccccccccccccccccccccCcccccc
Confidence 456788886543 23458889999999999998876 444578999999864211 00 00
Q ss_pred ---------CC---CCCCCcccccccccCCCCCCCcCCCcccCCCC----CCCCCCCCCCCCCCC
Q 003343 493 ---------QA---QDPLPDLRTASTNLYNRPSPIVSFGEGFDPYS----VSSPRIPLTPGSGNL 541 (828)
Q Consensus 493 ---------q~---~~~~~~~f~~k~~~f~~p~~~~~~~~~ldp~l----~~~pr~~~~~~~~~~ 541 (828)
+. ...+...|+ +...|..|-.++|-. |+.|.. ..-|+..|+|-.|..
T Consensus 161 wD~~~~~n~qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~-Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 161 WDSGHKVNLQCSVCYCGGPGAGN-RMLQCDKCRQWYHQA-CHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cCccccccceeeeeecCCcCccc-eeeeecccccHHHHH-hccCCCCHhhccCccceEeehhhcc
Confidence 00 012223333 566688898899954 887773 334788899988874
No 180
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.95 E-value=13 Score=40.18 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=38.1
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.+.|||-.-.+.+......+-+|||.|-..=+.+. ....|++|.+.|..-
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 47899998887755556778889999987776553 366799999887653
No 181
>PLN02195 cellulose synthase A
Probab=46.20 E-value=16 Score=46.26 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=34.5
Q ss_pred CCcccccccccccc---ccccceeccCCCccChhhHHHH-hhcCCCCCCcccccc
Q 003343 342 AKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIMEW-SKVESRCPLCKQRFK 392 (828)
Q Consensus 342 ~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~~w-~~~~~~CP~CR~~~~ 392 (828)
....|.||.+.+.- +..---+.-|+--.|..|..-= ......||+|++++.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 45789999997531 1112233348888999999522 234566999999987
No 182
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=46.15 E-value=4.6 Score=46.79 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.7
Q ss_pred HhhcCcccccceeeecCCC
Q 003343 761 LAACGLEHSRSEVHIVPPP 779 (828)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~ 779 (828)
.|.|-|.-.---|.+.--|
T Consensus 713 ValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEP 731 (807)
T ss_pred HHHHHHhcCCCCEEEecCC
Confidence 3555555555666666444
No 183
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=45.48 E-value=15 Score=46.90 Aligned_cols=53 Identities=25% Similarity=0.527 Sum_probs=36.0
Q ss_pred cCCcccccccccccc---ccccceeccCCCccChhhHH-HHhhcCCCCCCccccccc
Q 003343 341 VAKQVCGICLSEEDK---RRLRGTLNCCSHYFCFTCIM-EWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 341 ~~~~~C~ICle~~~~---~~~~~~l~~CgH~FC~~CI~-~w~~~~~~CP~CR~~~~~ 393 (828)
.....|.||.+.+.- +..-.-+.-|+--.|..|.. ........||.|++++..
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 356899999998631 11122233477789999995 233456679999999874
No 184
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=45.20 E-value=12 Score=45.69 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=31.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCC
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL 386 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~ 386 (828)
..|.||--.+... --++..|+|..|-.|.+.|....-.||.
T Consensus 1029 ~~C~~C~l~V~gs--s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGS--SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeecc--chhhccccccccHHHHHHHHhcCCcCCC
Confidence 4577776665432 2355569999999999999998888994
No 185
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.11 E-value=16 Score=44.75 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=37.6
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCC--ccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPL--CKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~--CR~~~~~ 393 (828)
...|.+|...+. +..-.+..|+|.-|..|+..|......||. |....++
T Consensus 779 ~~~CtVC~~vi~--G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 779 SAKCTVCDLVIR--GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHY 829 (839)
T ss_pred hcCceeecceee--eeEeecccccccccHHHHHHHHhcCCCCccccCCccccc
Confidence 357999988764 234566679999999999999998888887 7654443
No 186
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=44.14 E-value=4.6 Score=36.08 Aligned_cols=49 Identities=22% Similarity=0.541 Sum_probs=25.1
Q ss_pred CcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...+|.+|+.. .+.++.+.|..|....+..|+.. +..+|.-.||.|...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY--Erkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY--ERKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH--HHHTS-SB-TTT--B
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHH--HhhcCcccccccCCC
Confidence 45689999763 44667899999999999999875 355788899999863
No 187
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=44.09 E-value=5.8 Score=34.82 Aligned_cols=42 Identities=31% Similarity=0.722 Sum_probs=24.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
..||.|...+. +.. +|++|..|-..+ .....||.|..++..+
T Consensus 2 ~~CP~C~~~L~------~~~--~~~~C~~C~~~~-~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELE------WQG--GHYHCEACQKDY-KKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEE------EET--TEEEETTT--EE-EEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccE------EeC--CEEECccccccc-eecccCCCcccHHHHH
Confidence 57999999875 222 789999997653 3456799998776544
No 188
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=43.26 E-value=14 Score=32.24 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=18.6
Q ss_pred cccccccC---CCCccccccc--ccccccccccCCC------C--CCCCCCCcccCCCCCC
Q 003343 438 ICSECHQG---GDDGLMLLCD--ICDSSAHTYCVGL------G--RVVPEGNWYCDGCRPV 485 (828)
Q Consensus 438 ~C~vC~~~---~~~~~~llCd--~Cd~~~H~~CL~p------~--~~vP~g~W~Cp~C~~~ 485 (828)
.|.+|... ......+.|. .|...||..||-- . ...-...+-||.|...
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 57888653 2234468898 7999999999961 1 1111234679999874
No 189
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.11 E-value=12 Score=45.60 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=34.0
Q ss_pred cccccccccccccccceeccCCC-ccChhhHHHHh--hc----CCCCCCccccccccc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCSH-YFCFTCIMEWS--KV----ESRCPLCKQRFKTIT 395 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH-~FC~~CI~~w~--~~----~~~CP~CR~~~~~i~ 395 (828)
.|+||-.... ....-.|+| ..|..|..+.. .. .+.||+|+..+....
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 5999988765 345567999 89999987543 22 345899998776554
No 190
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=19 Score=41.20 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=35.1
Q ss_pred ccccccccccccccccceeccCCCccChhhHHHHhhcC---CCCCCcc
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVE---SRCPLCK 388 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~---~~CP~CR 388 (828)
+.|||=.+.-. ....|..+.|||+.+..=|.+..+.. ..||-|-
T Consensus 335 F~CPVlKeqts-deNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 335 FICPVLKEQTS-DENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eecccchhhcc-CCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 68999888754 44568888899999999998877643 4699994
No 191
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=41.56 E-value=16 Score=38.24 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCCCcccccccccccCCCCCCCccccccCCCCcccCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 003343 670 ANGSVNLTLWPELAGINSLPSFGQLHQRSSLSHIGSDGFAIPFTAKEEFDSHVAKEQLQSVVKSHLKN 737 (828)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (828)
.++||+++||++. | ..+|..|+++ |.-.+|..|.-|.|---..|+.+++.-.+-|+.|..+
T Consensus 49 dg~~v~L~LwDTA-G---qedYDrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~ 109 (198)
T KOG0393|consen 49 DGKPVELGLWDTA-G---QEDYDRLRPL---SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN 109 (198)
T ss_pred CCCEEEEeeeecC-C---Cccccccccc---CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC
Confidence 4889999999987 5 4566678755 6667788888889999999999999999999999743
No 192
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=14 Score=43.17 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=29.8
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHhhc
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKV 380 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~ 380 (828)
.....|.||.+.+.. ..+.+.|+|.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhh
Confidence 355889999999753 4667789999999999887753
No 193
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.92 E-value=11 Score=42.10 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=31.4
Q ss_pred Cccccccccccccccccce--eccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 343 KQVCGICLSEEDKRRLRGT--LNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~--l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
...||||...-.-..+... -..=-+.+|..|-..|.-....||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3489999987321101000 0111277999999999988999999975
No 194
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=39.69 E-value=7.3 Score=33.68 Aligned_cols=27 Identities=30% Similarity=0.794 Sum_probs=22.3
Q ss_pred ccccccccccccccccCCCCCCCCCCCcccCCCC
Q 003343 450 LMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCR 483 (828)
Q Consensus 450 ~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~ 483 (828)
.|++|.+|+...|..|++|. -+|..|.
T Consensus 42 AMi~Cq~CGAFCHDDCIgps-------kLCvsCl 68 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPS-------KLCVSCL 68 (69)
T ss_pred HHHHHhhccchhccccccHH-------HHhHhhc
Confidence 49999999999999999986 4565554
No 195
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.51 E-value=15 Score=40.30 Aligned_cols=30 Identities=23% Similarity=0.741 Sum_probs=22.0
Q ss_pred CCCccChhhHHHHhh-------------cCCCCCCcccccccc
Q 003343 365 CSHYFCFTCIMEWSK-------------VESRCPLCKQRFKTI 394 (828)
Q Consensus 365 CgH~FC~~CI~~w~~-------------~~~~CP~CR~~~~~i 394 (828)
|.-..|..|+.+|.. .+..||+||+.|-..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 445677899988763 345699999988554
No 196
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.98 E-value=28 Score=41.35 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=38.0
Q ss_pred CcccccccccCCCCcccccccccccccccccCCCCCCCCC--CCcccCCCCCC
Q 003343 435 ENVICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPE--GNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~--g~W~Cp~C~~~ 485 (828)
...+|..|.-.+. .+.|..|-+.||..|+.|...++. ..|.||.|...
T Consensus 59 ~d~~cfechlpg~---vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 59 IDPFCFECHLPGA---VLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCcccccccCCcc---eeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 3568889987765 788999999999999998634443 34999999874
No 197
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=10 Score=38.35 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCccccccccccccccccceeccCCCccCh
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCF 371 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~ 371 (828)
..-.|.|||+.+.....+..++ |..+||.
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 3568999999988666666665 8888874
No 198
>PLN03237 DNA topoisomerase 2; Provisional
Probab=37.31 E-value=22 Score=47.11 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=7.6
Q ss_pred CCCccccccccccc
Q 003343 232 DDDDDDINFIDEGV 245 (828)
Q Consensus 232 eddedDdDfi~dd~ 245 (828)
++|||||||.++..
T Consensus 1312 ~~~~~~~~~~~~~~ 1325 (1465)
T PLN03237 1312 DSDDDDDDFAVEVS 1325 (1465)
T ss_pred cccccccccchhhc
Confidence 44445666665544
No 199
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.26 E-value=27 Score=33.47 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=34.5
Q ss_pred Cccccccccccccc----------cccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 343 KQVCGICLSEEDKR----------RLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 343 ~~~C~ICle~~~~~----------~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
...|--|+..|... ..+-....|.+.||.+|=.-+.+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999987522 11223667999999999888888778899995
No 200
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=36.94 E-value=13 Score=37.61 Aligned_cols=32 Identities=34% Similarity=0.897 Sum_probs=26.2
Q ss_pred cccccccccCCCCcccccccc---------ccccc-ccccCC
Q 003343 436 NVICSECHQGGDDGLMLLCDI---------CDSSA-HTYCVG 467 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~---------Cd~~~-H~~CL~ 467 (828)
...|.+|......+++|+|.. |+.+| |..||+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLd 43 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLD 43 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHH
Confidence 457999999888899999995 66665 888986
No 201
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=36.86 E-value=27 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=18.4
Q ss_pred CCccChhhHHHHhh---------cCCCCCCccc
Q 003343 366 SHYFCFTCIMEWSK---------VESRCPLCKQ 389 (828)
Q Consensus 366 gH~FC~~CI~~w~~---------~~~~CP~CR~ 389 (828)
.-.||..||..+.. ..+.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 78899999985542 2466999986
No 202
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.75 E-value=14 Score=41.19 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCccccccccccccccccc-eeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKRRLRG-TLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~-~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
....||||...-.-..+.. --..=-+.+|..|-..|.-....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3578999988732110000 00111377999999999988999999975
No 203
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=36.23 E-value=12 Score=44.96 Aligned_cols=42 Identities=21% Similarity=0.579 Sum_probs=26.9
Q ss_pred Cccccccccc-----cccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 343 KQVCGICLSE-----EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 343 ~~~C~ICle~-----~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
...|.||... |. ......+..|+++||..|+. .....||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~---r~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLR---RKSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHh---ccCCCCCchH
Confidence 5778888442 21 11123455699999999953 3455599994
No 204
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=36.03 E-value=5.7 Score=43.78 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=20.3
Q ss_pred cccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 451 MLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 451 ~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...|..|..-||.+|-..- -+.--+|+.|..+
T Consensus 388 rY~Ce~CK~~FC~dCdvfi---He~Lh~C~gCe~~ 419 (421)
T COG5151 388 RYQCELCKSTFCSDCDVFI---HETLHFCIGCELP 419 (421)
T ss_pred ceechhhhhhhhhhhHHHH---HHHHhhCCCCcCC
Confidence 4568888888887775431 1222578888763
No 205
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=34.54 E-value=23 Score=40.14 Aligned_cols=38 Identities=37% Similarity=0.760 Sum_probs=31.4
Q ss_pred cccccccccccccccc--CCCC-CCCC-CCCcccCCCCCCCC
Q 003343 450 LMLLCDICDSSAHTYC--VGLG-RVVP-EGNWYCDGCRPVAL 487 (828)
Q Consensus 450 ~~llCd~Cd~~~H~~C--L~p~-~~vP-~g~W~Cp~C~~~~~ 487 (828)
.|+-|+.|..+||..| ++++ .++| ...|+|..|....-
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 6899999999999999 9988 4444 56799999987543
No 206
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=8.5 Score=34.34 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=30.6
Q ss_pred cccccccCCCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 438 ICSECHQGGDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 438 ~C~vC~~~~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
.|..|...++.=.+++ -.|...||..|+.---..|...-.||.|+..
T Consensus 33 ~Cp~Ck~PgDdCPLv~-G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVW-GYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred cCCCCcCCCCCCccHH-HHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 4556666554322222 2588889999986433566677899999873
No 207
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.11 E-value=24 Score=38.09 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=28.6
Q ss_pred cCCccccccccccccccccceeccCCCccChhhHHHHh
Q 003343 341 VAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWS 378 (828)
Q Consensus 341 ~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~ 378 (828)
..-..|+.||..+. .|++.+=||.||..||..++
T Consensus 41 K~FdcCsLtLqPc~----dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCR----DPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeeccccc----CCccCCCCeeeeHHHHHHHH
Confidence 34578999999986 68888889999999998664
No 208
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=34.03 E-value=17 Score=30.97 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=17.1
Q ss_pred CCccccccccccccccccceeccCCCccChhhHH
Q 003343 342 AKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIM 375 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~ 375 (828)
....|.+|...|.-....--.-.||++||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 4578999999986332334455699999988864
No 209
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.96 E-value=20 Score=43.58 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=34.2
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
...|-+|+..-......+..+.|+-.||..| |......||+|.-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCc
Confidence 3579999887654555677778999999999 6666778999953
No 210
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.29 E-value=28 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred ccccccccccccccccceeccCCCccChhhHHH
Q 003343 344 QVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (828)
Q Consensus 344 ~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~ 376 (828)
..|.+|...|...........||++||..|...
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCC
Confidence 579999888763333344556999999999754
No 211
>COG1773 Rubredoxin [Energy production and conversion]
Probab=33.22 E-value=30 Score=29.14 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=13.0
Q ss_pred CCCCCCCcccCCCCCCCCCC
Q 003343 470 RVVPEGNWYCDGCRPVALGS 489 (828)
Q Consensus 470 ~~vP~g~W~Cp~C~~~~~g~ 489 (828)
..+| .+|.||.|-.....|
T Consensus 31 edlP-d~w~CP~Cg~~K~~F 49 (55)
T COG1773 31 EDLP-DDWVCPECGVGKKDF 49 (55)
T ss_pred hhCC-CccCCCCCCCCHhHe
Confidence 4455 679999998754433
No 212
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=32.22 E-value=30 Score=36.20 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=28.9
Q ss_pred ccccccccCCC-----CcccccccccccccccccCCCCCCCCCCCcccCCCCC
Q 003343 437 VICSECHQGGD-----DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 437 ~~C~vC~~~~~-----~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
.+|.+|...+- ......|..|..-||..|+.. -.||.|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 36777765421 235788999999999999773 23999964
No 213
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=32.11 E-value=17 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=23.0
Q ss_pred Ccccc--ccccccccc----cccceeccCCCccChhhHHHHh
Q 003343 343 KQVCG--ICLSEEDKR----RLRGTLNCCSHYFCFTCIMEWS 378 (828)
Q Consensus 343 ~~~C~--ICle~~~~~----~~~~~l~~CgH~FC~~CI~~w~ 378 (828)
-..|| -|...+... ........|++.||+.|...|.
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 34577 776654322 1223343589999999998884
No 214
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=21 Score=39.55 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=38.2
Q ss_pred CCccccccccccccccccceec-cCCCccChhhHHHHhhcCCCCCCccccccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLN-CCSHYFCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~-~CgH~FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
....|-||...+. ++... .|.|.||..|...|.....-||.|+.....
T Consensus 104 ~~~~~~~~~g~l~----vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLT----VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEE----ecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3478999999886 33333 499999999999999999999999865543
No 215
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=31.70 E-value=57 Score=38.06 Aligned_cols=24 Identities=17% Similarity=-0.103 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCcccCCcccCCCCC
Q 003343 535 TPGSGNLSSPRFTVGDVQAASPGS 558 (828)
Q Consensus 535 ~~~~~~~~s~~~ygadih~~s~~s 558 (828)
...||...--+-.|.|+=++..++
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred ccccceeeeEecccCceEEecCCC
Confidence 344777544445555655555444
No 216
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=30 Score=40.49 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=21.8
Q ss_pred cceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 359 RGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 359 ~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
..+.-.|+|.||+.|...|.... .|+.+.
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~-~C~~~~ 206 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPV-SCPGAK 206 (444)
T ss_pred cceeCCCCchhHhhccccccCCC-cccchH
Confidence 45566699999999999886544 677664
No 217
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=30.60 E-value=2.3e+02 Score=32.23 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=21.2
Q ss_pred hhhhhhhccccCCccccCCCCcccccc
Q 003343 653 RLNYLRRQAVQDPTISTANGSVNLTLW 679 (828)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (828)
++.|--.|-...|++...--|++..||
T Consensus 232 Tl~Qr~~QP~~qpv~~~~LyP~~~~L~ 258 (449)
T KOG3896|consen 232 TLDQRIMQPLIQPVISEPLYPVQVPLA 258 (449)
T ss_pred hHHHHhcCccccccccccccceeeecc
Confidence 355556677778889888889999888
No 218
>PLN02400 cellulose synthase
Probab=29.94 E-value=33 Score=44.08 Aligned_cols=50 Identities=18% Similarity=0.510 Sum_probs=40.6
Q ss_pred CCcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 434 YENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 434 ~e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..-.+|.+|+.. .+.+.-+.|..|....|..|... +.-+|+=.||.|...
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTR 87 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe--ecccCCccCcccCCc
Confidence 355689999864 34567899999999999999975 467899999999764
No 219
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.39 E-value=31 Score=34.81 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=18.3
Q ss_pred CCccChhhHHHHhhcCCCCCCcccccccc
Q 003343 366 SHYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 366 gH~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
.+.||..|=..- -..||.|..++.+-
T Consensus 27 ~~~fC~kCG~~t---I~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKT---ITSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHH---HHHCcCCCCCCCCc
Confidence 377999996543 23699998776543
No 220
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.26 E-value=30 Score=44.48 Aligned_cols=49 Identities=22% Similarity=0.557 Sum_probs=39.9
Q ss_pred CcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
.-.+|.+|+.. .+.+.-+-|..|.-+.|..|+.- +.-+|+=.||.|...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 45689999864 34567889999999999999975 467899999999764
No 221
>PF07255 Benyvirus_14KDa: Benyvirus 14KDa protein; InterPro: IPR009884 This family consists of several Benyvirus specific 14 kDa proteins of around 125 residues in length. Members of this family contain 9 conserved cysteine residues. The function of this family is unknown.
Probab=29.20 E-value=25 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=21.0
Q ss_pred cccccccccc-----ccccccchhhHHhHHH
Q 003343 783 SHVERVSSGQ-----TSLMKSHCSSCFDSFI 808 (828)
Q Consensus 783 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 808 (828)
.|.+.++.|- -+-|-|.|+.||+||-
T Consensus 83 ~H~~~~~~G~~R~~RNFSI~G~C~~C~~S~~ 113 (123)
T PF07255_consen 83 NHSKHVQNGYLRKVRNFSILGVCGDCCESFT 113 (123)
T ss_pred chHHHhhcCeEEEecceeEEeehhhHHHHHh
Confidence 5777778775 5667899999999995
No 222
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=28.84 E-value=54 Score=38.51 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 003343 1 MGRGGKVGS 9 (828)
Q Consensus 1 ~~~~~~~~~ 9 (828)
||+++...+
T Consensus 1 ~gk~r~~~~ 9 (517)
T KOG3118|consen 1 MGKKRGTLK 9 (517)
T ss_pred CCCCCCccc
Confidence 555544433
No 224
>PLN02436 cellulose synthase A
Probab=28.83 E-value=33 Score=44.02 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=40.8
Q ss_pred CCCcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 433 PYENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 433 ~~e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
.....+|.+|+.. .+.+.-+-|..|.-..|..|+.- +.-+|+=.||.|...
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~ 87 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY--ERREGNQACPQCKTR 87 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 3455689999864 34567889999999999999975 467889999999764
No 225
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.82 E-value=41 Score=39.25 Aligned_cols=8 Identities=13% Similarity=0.704 Sum_probs=4.8
Q ss_pred hhHHHHhh
Q 003343 372 TCIMEWSK 379 (828)
Q Consensus 372 ~CI~~w~~ 379 (828)
.-|..|..
T Consensus 302 ~~L~KW~d 309 (483)
T KOG2773|consen 302 KVLRKWHD 309 (483)
T ss_pred HHHHHHhh
Confidence 45567764
No 226
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=28.34 E-value=17 Score=39.77 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=21.0
Q ss_pred ccCC-CccChhhHHHH--hhcCCCCCCccccc
Q 003343 363 NCCS-HYFCFTCIMEW--SKVESRCPLCKQRF 391 (828)
Q Consensus 363 ~~Cg-H~FC~~CI~~w--~~~~~~CP~CR~~~ 391 (828)
..|. -+||+.|+.-- .+..++||.|+...
T Consensus 238 ~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 238 PGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 3488 89999998522 24568999998643
No 227
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.25 E-value=38 Score=37.96 Aligned_cols=45 Identities=24% Similarity=0.519 Sum_probs=29.9
Q ss_pred CccccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCcc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCK 388 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR 388 (828)
...|-.|..... ....-.+..|.+.||.+|=.--...-..||-|.
T Consensus 330 ~~~Cf~C~~~~~-~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELL-SSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccC-CCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 345888855543 223345667999999999654445556699996
No 228
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.17 E-value=34 Score=43.60 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=35.1
Q ss_pred ccCCccccccccccccccccceeccCC-----CccChhhHHHHhhcCCCCCCcccccccc
Q 003343 340 EVAKQVCGICLSEEDKRRLRGTLNCCS-----HYFCFTCIMEWSKVESRCPLCKQRFKTI 394 (828)
Q Consensus 340 e~~~~~C~ICle~~~~~~~~~~l~~Cg-----H~FC~~CI~~w~~~~~~CP~CR~~~~~i 394 (828)
+.....|+-|-.... ...|+.|| ..||..| .+......||.|.......
T Consensus 623 EVg~RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 623 EIGRRKCPSCGKETF----YRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred cccCccCCCCCCcCC----cccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 445678999988743 45777898 4699999 3444456699998766543
No 229
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=27.94 E-value=34 Score=40.35 Aligned_cols=51 Identities=29% Similarity=0.709 Sum_probs=39.4
Q ss_pred ccccccccCCC-CcccccccccccccccccCCCCCCCCCCCcccCCCCCCCCC
Q 003343 437 VICSECHQGGD-DGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPVALG 488 (828)
Q Consensus 437 ~~C~vC~~~~~-~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~~~g 488 (828)
..| .|+..+. ...++-|+.|..|-|.+|++.....+.....|..|....+.
T Consensus 87 ~~c-~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 87 SRC-DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKE 138 (508)
T ss_pred ccc-ccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeecccccc
Confidence 345 7887777 88899999999999999999762222366889999886443
No 230
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.43 E-value=24 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=7.1
Q ss_pred HhhcCCCCCCccccc
Q 003343 377 WSKVESRCPLCKQRF 391 (828)
Q Consensus 377 w~~~~~~CP~CR~~~ 391 (828)
+......||+|...|
T Consensus 10 V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 10 VPESAKFCPHCGYDF 24 (26)
T ss_pred chhhcCcCCCCCCCC
Confidence 333444555555443
No 231
>PLN02189 cellulose synthase
Probab=26.80 E-value=37 Score=43.51 Aligned_cols=50 Identities=22% Similarity=0.540 Sum_probs=40.5
Q ss_pred CCcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 434 YENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 434 ~e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..-.+|.+|+.. .+.+.-+-|..|.-..|..|+.- +.-+|+=.||.|...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~ 85 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTR 85 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 345689999875 44567889999999999999975 467899999999764
No 232
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.73 E-value=15 Score=36.13 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.2
Q ss_pred CCccccccccc
Q 003343 342 AKQVCGICLSE 352 (828)
Q Consensus 342 ~~~~C~ICle~ 352 (828)
.+.+|.||+-.
T Consensus 64 ddatC~IC~KT 74 (169)
T KOG3799|consen 64 DDATCGICHKT 74 (169)
T ss_pred cCcchhhhhhc
Confidence 45899999986
No 233
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=26.43 E-value=1.2e+02 Score=39.28 Aligned_cols=50 Identities=26% Similarity=0.741 Sum_probs=38.9
Q ss_pred CcccccccccCC--CCcccccccccccccccccCCCCCCCCCCCcccCCCCC
Q 003343 435 ENVICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 435 e~~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
.-..|.+|+-.. ...+++.|+.|..+.|..|++.....+...|.|..|..
T Consensus 572 ~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 623 (1005)
T KOG1080|consen 572 TTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCET 623 (1005)
T ss_pred CcccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhcccc
Confidence 346789997643 34678999999999999999976344445799999986
No 234
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=26.07 E-value=23 Score=29.66 Aligned_cols=29 Identities=31% Similarity=0.705 Sum_probs=23.6
Q ss_pred cccccccccccccccc----chhhHHhHHHHHH
Q 003343 783 SHVERVSSGQTSLMKS----HCSSCFDSFIKDV 811 (828)
Q Consensus 783 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 811 (828)
+|.=+|+..+.+||+- .|+.||.++..|+
T Consensus 18 srsC~vCsn~~gLIrKYGL~vcr~cfr~~a~di 50 (56)
T KOG3506|consen 18 SRSCRVCSNRHGLIRKYGLNVCRQCFREYANDI 50 (56)
T ss_pred CcceeeeccchhHHHHhhhHHhHHHHHhhcccc
Confidence 4455678899999975 8999999998875
No 235
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=26.05 E-value=23 Score=40.25 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.7
Q ss_pred hhhhhc
Q 003343 108 RKVVRS 113 (828)
Q Consensus 108 ~~~~~~ 113 (828)
+|+.|.
T Consensus 339 ~kv~r~ 344 (375)
T PF03153_consen 339 DKVTRV 344 (375)
T ss_dssp EEEEEE
T ss_pred eccccc
Confidence 344444
No 236
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=16 Score=40.04 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCccccccccccc--cccccceecc--------CCCccChhhHHHHhhc-CCCCCCcccc
Q 003343 342 AKQVCGICLSEED--KRRLRGTLNC--------CSHYFCFTCIMEWSKV-ESRCPLCKQR 390 (828)
Q Consensus 342 ~~~~C~ICle~~~--~~~~~~~l~~--------CgH~FC~~CI~~w~~~-~~~CP~CR~~ 390 (828)
....|.||...+. .....+.++. |+|..|..|+..-+.. ...||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3467999999886 2344666666 9999999999876543 3679999864
No 237
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=30 Score=42.82 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=28.8
Q ss_pred cccccccccccccc---ccceeccCCCccChhhHHHHhhcCCCCCCc
Q 003343 344 QVCGICLSEEDKRR---LRGTLNCCSHYFCFTCIMEWSKVESRCPLC 387 (828)
Q Consensus 344 ~~C~ICle~~~~~~---~~~~l~~CgH~FC~~CI~~w~~~~~~CP~C 387 (828)
..|.-|.+...... ..-+...|+|.||..|++..+.... |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 58999999864322 1234456999999999986554333 5555
No 238
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=24.81 E-value=34 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=12.7
Q ss_pred ccCCCCCccccccccccc
Q 003343 228 ERSDDDDDDDINFIDEGV 245 (828)
Q Consensus 228 ~~~eeddedDdDfi~dd~ 245 (828)
....+..|-+|.||++++
T Consensus 12 ~~~~~~YD~~D~FIDDsE 29 (55)
T PF08729_consen 12 RDRGDGYDTDDPFIDDSE 29 (55)
T ss_pred CCccccccCCCCCcCCHH
Confidence 333455666789999988
No 239
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=24.81 E-value=39 Score=41.51 Aligned_cols=29 Identities=21% Similarity=0.675 Sum_probs=20.9
Q ss_pred ccccccccCCCCccccccc--ccccccccccCC
Q 003343 437 VICSECHQGGDDGLMLLCD--ICDSSAHTYCVG 467 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd--~Cd~~~H~~CL~ 467 (828)
.+|.+|..... . .+.|. .|-.+||..|-.
T Consensus 381 lvC~LCk~k~G-A-CIqCs~k~C~t~fHv~CA~ 411 (893)
T KOG0954|consen 381 LVCNLCKVKSG-A-CIQCSNKTCRTAFHVTCAF 411 (893)
T ss_pred HHHHHhcccCc-c-eEEecccchhhhccchhhh
Confidence 57999976432 2 44454 699999999976
No 240
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=24.60 E-value=35 Score=37.34 Aligned_cols=49 Identities=27% Similarity=0.482 Sum_probs=31.9
Q ss_pred cccccccccc-cccccc--ceeccCCCccChhhHHHHhh-c--------CCCCCCcccccc
Q 003343 344 QVCGICLSEE-DKRRLR--GTLNCCSHYFCFTCIMEWSK-V--------ESRCPLCKQRFK 392 (828)
Q Consensus 344 ~~C~ICle~~-~~~~~~--~~l~~CgH~FC~~CI~~w~~-~--------~~~CP~CR~~~~ 392 (828)
..|-||...+ +....+ +.-..|+-.+|+.|+...+. . ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5799998887 322222 22234889999999987432 1 255999988443
No 241
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=24.39 E-value=26 Score=41.04 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=22.3
Q ss_pred cccccccccCCCCcccccccc--cccccccccCC
Q 003343 436 NVICSECHQGGDDGLMLLCDI--CDSSAHTYCVG 467 (828)
Q Consensus 436 ~~~C~vC~~~~~~~~~llCd~--Cd~~~H~~CL~ 467 (828)
...|.+|..... ..+.|.. |-++||..|..
T Consensus 303 kl~C~iCk~~~G--tcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 303 KLGCLICKEFGG--TCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred hheeeEEcccCc--ceeeecccchhhhhhhhhhh
Confidence 457999976543 3666764 89999999976
No 242
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=24.36 E-value=67 Score=32.56 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCchhHHHhhhhhhhHHHhhcCcccccceee
Q 003343 722 VAKEQLQSVVKSHLKNLSRDIQLDPSTFKDIAGSSTHTILAACGLEHSRSEVH 774 (828)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (828)
--|+|+|.||++-|.. .. .+. .|.-. -.-+|.|++-|.+.-.|
T Consensus 114 A~KeQV~~mV~~lL~l-~~-~p~-~DaaD-------ALAiAi~h~~~~~~~~~ 156 (156)
T TIGR00228 114 AEKSQVQHMVRRLLKL-PA-NPQ-ADAAD-------ALAIAITHAHVSQNALH 156 (156)
T ss_pred CCHHHHHHHHHHHcCC-CC-CCC-CCHHH-------HHHHHHHHhcccCccCC
Confidence 4599999999998873 22 332 23333 33467788887765443
No 243
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=24.23 E-value=54 Score=32.62 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=25.6
Q ss_pred HhhhccccCCCchhHHHhhhhhhhHHHhhcCcc
Q 003343 735 LKNLSRDIQLDPSTFKDIAGSSTHTILAACGLE 767 (828)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (828)
+..+.....|+...|..+++.-|+.||..||+.
T Consensus 111 i~~~~g~~~~~~~d~e~a~~~v~~liL~g~g~~ 143 (143)
T PF08362_consen 111 IRAVLGKSELSEEDFEQAAEFVTALILRGCGPR 143 (143)
T ss_dssp HHHHHS--TTSHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 445556678999999999999999999999984
No 244
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.83 E-value=53 Score=34.39 Aligned_cols=42 Identities=24% Similarity=0.534 Sum_probs=28.8
Q ss_pred CCccccccccc-----cccccccceeccCCCccChhhHHHHhhcCCCCCCccc
Q 003343 342 AKQVCGICLSE-----EDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~-----~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~ 389 (828)
.+..|.||.+. |+. .....+..|+-.||..|.. ...||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 36789999863 221 1234566799999999965 256999953
No 245
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=23.83 E-value=54 Score=36.62 Aligned_cols=45 Identities=4% Similarity=-0.220 Sum_probs=32.8
Q ss_pred CccccccccccccccccceeccCCCc-cChhhHHHHhhcCCCCCCccccccc
Q 003343 343 KQVCGICLSEEDKRRLRGTLNCCSHY-FCFTCIMEWSKVESRCPLCKQRFKT 393 (828)
Q Consensus 343 ~~~C~ICle~~~~~~~~~~l~~CgH~-FC~~CI~~w~~~~~~CP~CR~~~~~ 393 (828)
...|..|-..+- -..+.+|+|. ||..|.. +.....||+|....+.
T Consensus 343 ~~~~~~~~~~~~----st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~ 388 (394)
T KOG2113|consen 343 SLKGTSAGFGLL----STIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHT 388 (394)
T ss_pred hcccccccCcee----eeEeecCCcccChhhhhh--cccCCcccccccccee
Confidence 467999977653 3456679965 9999975 4567889999865544
No 246
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=23.47 E-value=52 Score=41.31 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=6.0
Q ss_pred chhHHHhhh
Q 003343 746 PSTFKDIAG 754 (828)
Q Consensus 746 ~~~~~~~~~ 754 (828)
|.-|=+|+|
T Consensus 820 QEa~YNigR 828 (895)
T KOG2076|consen 820 QEAFYNIGR 828 (895)
T ss_pred HHHHHHHHH
Confidence 456777776
No 247
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=23.31 E-value=38 Score=40.20 Aligned_cols=30 Identities=23% Similarity=0.689 Sum_probs=14.1
Q ss_pred cccccccccccccccCCCCCCCCCCCcccCCCCC
Q 003343 451 MLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRP 484 (828)
Q Consensus 451 ~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~ 484 (828)
++||..|...-|.+|+..- ..-||||.|..
T Consensus 5 L~fC~~C~~irc~~c~~~E----i~~~yCp~CL~ 34 (483)
T PF05502_consen 5 LYFCEHCHKIRCPRCVSEE----IDSYYCPNCLF 34 (483)
T ss_pred ceecccccccCChhhcccc----cceeECccccc
Confidence 4455555554455554321 12355555554
No 248
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=23.07 E-value=42 Score=29.28 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=8.7
Q ss_pred ccChhhHHHHhh
Q 003343 368 YFCFTCIMEWSK 379 (828)
Q Consensus 368 ~FC~~CI~~w~~ 379 (828)
-||+.||..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 249
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.85 E-value=23 Score=29.09 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred ccccc--ccccccccccc----ceeccCCCccChhhHHHHh
Q 003343 344 QVCGI--CLSEEDKRRLR----GTLNCCSHYFCFTCIMEWS 378 (828)
Q Consensus 344 ~~C~I--Cle~~~~~~~~----~~l~~CgH~FC~~CI~~w~ 378 (828)
..||- |...+...... .+...|++.||+.|-..|.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 47877 88876533221 3455589999999988874
No 250
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=22.78 E-value=52 Score=23.88 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=22.2
Q ss_pred cccccccccccccccceeccCCCccChhhHHHHhhcCCCCCCccccc
Q 003343 345 VCGICLSEEDKRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRF 391 (828)
Q Consensus 345 ~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~w~~~~~~CP~CR~~~ 391 (828)
.|..|...+... ...+..=+..||..|+ .|..|+..+
T Consensus 1 ~C~~C~~~i~~~--~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGG--ELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCC--cEEEEeCCccccccCC--------CCcccCCcC
Confidence 478888877532 1122223577777775 577777654
No 251
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.63 E-value=46 Score=40.90 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=7.7
Q ss_pred CchhHHHhhhhhhhHHHh
Q 003343 745 DPSTFKDIAGSSTHTILA 762 (828)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~ 762 (828)
..-.|.+.|+.-.|.|++
T Consensus 705 s~~ri~nLa~l~a~Li~~ 722 (822)
T KOG2141|consen 705 SLFRISNLAKLLASLISN 722 (822)
T ss_pred chhhHhHHHHHHHHHHHh
Confidence 333444444444444443
No 252
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.50 E-value=50 Score=42.45 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=39.8
Q ss_pred CcccccccccC----CCCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 435 ENVICSECHQG----GDDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 435 e~~~C~vC~~~----~~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
...+|.+|+.. .+.+.-+-|..|.-+.|..|+.. +.-+|+=.||.|...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 45689999864 33557889999999999999975 467899999999764
No 253
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=21.73 E-value=29 Score=42.57 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=9.8
Q ss_pred ccccccccccCCCCC
Q 003343 675 NLTLWPELAGINSLP 689 (828)
Q Consensus 675 ~~~~~~~~~~~~~~~ 689 (828)
|..||+-|.-+-.++
T Consensus 691 QF~~WD~f~ele~ls 705 (822)
T KOG2141|consen 691 QFALWDRFKELEQLS 705 (822)
T ss_pred HHHHHHHHHHhhhcc
Confidence 467888777665543
No 254
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.59 E-value=42 Score=37.58 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=30.8
Q ss_pred ccccccccCC--CCcccccccccccccccccCCCCCCCCCCCcccCCCCCC
Q 003343 437 VICSECHQGG--DDGLMLLCDICDSSAHTYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~--~~~~~llCd~Cd~~~H~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..|.+|.... .+...++-..|+..||..|+... ...+.-.||.|...
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l--~~~~~~~CP~C~~~ 52 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL--FVRGSGSCPECDTP 52 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHH--hcCCCCCCCCCCCc
Confidence 4799998742 33332333389989999998853 22344589999764
No 255
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.51 E-value=24 Score=24.34 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=4.5
Q ss_pred CCCCCCccc
Q 003343 381 ESRCPLCKQ 389 (828)
Q Consensus 381 ~~~CP~CR~ 389 (828)
...||.|..
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 344555554
No 256
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.43 E-value=32 Score=38.71 Aligned_cols=47 Identities=28% Similarity=0.669 Sum_probs=26.7
Q ss_pred CCccccccccccccccccceec--cCCCcc--------ChhhHHHHh-----hcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKRRLRGTLN--CCSHYF--------CFTCIMEWS-----KVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~~~~~~l~--~CgH~F--------C~~CI~~w~-----~~~~~CP~CR~ 389 (828)
.+..||+|.+...+- ..+.++ .|...| ++.|+.... .....||.||.
T Consensus 14 l~ElCPVCGDkVSGY-HYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccCccccc-eeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 457899999986522 233333 355444 445554221 12356999984
No 257
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.23 E-value=42 Score=35.47 Aligned_cols=16 Identities=38% Similarity=0.862 Sum_probs=12.4
Q ss_pred cCCCCCCccccccccc
Q 003343 380 VESRCPLCKQRFKTIT 395 (828)
Q Consensus 380 ~~~~CP~CR~~~~~i~ 395 (828)
...+||+|.+.|..-.
T Consensus 4 k~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKK 19 (214)
T ss_pred CceECCCCCCeeeeeE
Confidence 3456999999997754
No 258
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=99 Score=34.11 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhccccCCCchhHHHhhhhhhhHHHhhc-CcccccceeeecCCCCccccccccccccccccccchh
Q 003343 723 AKEQLQSVVKSHLKNLSRDIQLDPSTFKDIAGSSTHTILAAC-GLEHSRSEVHIVPPPSICSHVERVSSGQTSLMKSHCS 801 (828)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (828)
-|+|||.-||.-+++|-. + .+-| ||.-|-|.|=..= -|--..-+||..||-.+ -.++.+-||+-+.-|-|-
T Consensus 282 sk~~I~rqik~~v~si~d-a---kSVf--VAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~--y~dLaIlGqadhFiGNCv 353 (386)
T KOG3849|consen 282 SKQQILRQIKEKVGSIGD-A---KSVF--VASDSDHMIDELNEALKPYEIEVHRLEPDDM--YTDLAILGQADHFIGNCV 353 (386)
T ss_pred cHHHHHHHHHHHHhhhcc-c---ceEE--EeccchhhhHHHHHhhcccceeEEecCcccc--hhhhhhhcccchhhhhhH
Confidence 489999999999999851 1 1223 5667777775443 45555667888887554 346677899999999999
Q ss_pred hHHhHHHH
Q 003343 802 SCFDSFIK 809 (828)
Q Consensus 802 ~~~~~~~~ 809 (828)
|-|-.||+
T Consensus 354 SsfsafvK 361 (386)
T KOG3849|consen 354 SSFSAFVK 361 (386)
T ss_pred HHHHHHHh
Confidence 99999985
No 259
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=20.64 E-value=72 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=26.9
Q ss_pred cccCCccccccccccccccccceeccCCCccChhhHHH
Q 003343 339 SEVAKQVCGICLSEEDKRRLRGTLNCCSHYFCFTCIME 376 (828)
Q Consensus 339 ~e~~~~~C~ICle~~~~~~~~~~l~~CgH~FC~~CI~~ 376 (828)
.......|.+|.... ++.+......|...||..|...
T Consensus 32 ~~~~~~~C~~C~~~~-Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 32 KRRRKLKCSICKKKG-GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHhCCCCcCCCCCC-CeEEEEeCCCCCcEEChHHHcc
Confidence 344668999999873 2444555667999999999753
No 260
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=20.58 E-value=59 Score=37.15 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.5
Q ss_pred ccccCC
Q 003343 462 HTYCVG 467 (828)
Q Consensus 462 H~~CL~ 467 (828)
|.+|..
T Consensus 276 ~~~~s~ 281 (390)
T KOG2897|consen 276 ASFLSE 281 (390)
T ss_pred hhhhhc
Confidence 444433
No 261
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.46 E-value=58 Score=31.11 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCccccccccccccc-cccceeccCCCccChhhHHHH-hhcCCCCCCccc
Q 003343 342 AKQVCGICLSEEDKR-RLRGTLNCCSHYFCFTCIMEW-SKVESRCPLCKQ 389 (828)
Q Consensus 342 ~~~~C~ICle~~~~~-~~~~~l~~CgH~FC~~CI~~w-~~~~~~CP~CR~ 389 (828)
+...|.+|...|... ....++..|.|.+|..|-..- ....+.|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 457899999876422 123567779999999995431 112344777754
No 262
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.04 E-value=66 Score=38.32 Aligned_cols=39 Identities=33% Similarity=0.722 Sum_probs=23.7
Q ss_pred ccccccccCCCCcccccccccccc--cc--------cccCCCCCCCCCCCcccCCCCCC
Q 003343 437 VICSECHQGGDDGLMLLCDICDSS--AH--------TYCVGLGRVVPEGNWYCDGCRPV 485 (828)
Q Consensus 437 ~~C~vC~~~~~~~~~llCd~Cd~~--~H--------~~CL~p~~~vP~g~W~Cp~C~~~ 485 (828)
..|..|+.. +.|..|+.+ || .+|-.. ..+| |.||.|-..
T Consensus 214 ~~C~~Cg~~------~~C~~C~~~l~~h~~~~~l~Ch~Cg~~-~~~~---~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYI------LCCPNCDVSLTYHKKEGKLRCHYCGYQ-EPIP---KTCPQCGSE 262 (505)
T ss_pred eEhhhCcCc------cCCCCCCCceEEecCCCeEEcCCCcCc-CCCC---CCCCCCCCC
Confidence 467777653 458888854 33 344221 1234 999999764
Done!