Query 003345
Match_columns 828
No_of_seqs 340 out of 1848
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 21:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 8E-111 2E-115 972.3 36.4 660 102-827 51-711 (714)
2 PRK10334 mechanosensitive chan 100.0 2.3E-35 5E-40 317.4 31.6 220 590-820 62-283 (286)
3 PRK10929 putative mechanosensi 100.0 1.8E-32 3.9E-37 334.0 31.4 223 587-819 865-1090(1109)
4 PRK11281 hypothetical protein; 100.0 1.3E-31 2.7E-36 327.8 30.0 220 590-819 871-1093(1113)
5 PF00924 MS_channel: Mechanose 100.0 5.3E-32 1.2E-36 275.9 21.5 202 599-805 2-206 (206)
6 PRK11465 putative mechanosensi 100.0 2.6E-29 5.7E-34 295.6 30.9 219 589-819 505-727 (741)
7 COG3264 Small-conductance mech 100.0 1E-29 2.2E-34 296.8 25.7 234 569-818 578-814 (835)
8 COG0668 MscS Small-conductance 100.0 1.2E-27 2.5E-32 257.5 31.4 214 596-819 86-302 (316)
9 COG5126 FRQ1 Ca2+-binding prot 91.2 0.37 8.1E-06 48.7 5.5 58 516-575 55-120 (160)
10 KOG0044 Ca2+ sensor (EF-Hand s 90.8 0.57 1.2E-05 48.7 6.6 86 514-601 61-153 (193)
11 cd00052 EH Eps15 homology doma 90.6 0.68 1.5E-05 38.3 5.8 57 520-577 2-63 (67)
12 PF00036 EF-hand_1: EF hand; 89.1 0.53 1.1E-05 34.1 3.4 27 547-574 1-27 (29)
13 cd05026 S-100Z S-100Z: S-100Z 88.5 1.5 3.2E-05 40.0 6.8 63 513-576 6-82 (93)
14 PF13499 EF-hand_7: EF-hand do 88.2 0.9 2E-05 37.9 4.8 53 520-573 3-66 (66)
15 smart00027 EH Eps15 homology d 88.1 1.8 3.9E-05 39.4 7.1 64 515-579 8-76 (96)
16 cd05022 S-100A13 S-100A13: S-1 87.5 1.5 3.2E-05 40.1 6.1 62 514-576 5-76 (89)
17 cd00213 S-100 S-100: S-100 dom 85.9 2.4 5.3E-05 37.6 6.6 62 514-576 5-80 (88)
18 cd05025 S-100A1 S-100A1: S-100 85.7 2.5 5.4E-05 38.1 6.6 61 514-575 6-80 (92)
19 cd05023 S-100A11 S-100A11: S-1 85.6 2.1 4.6E-05 38.9 6.1 61 515-576 7-81 (89)
20 cd05029 S-100A6 S-100A6: S-100 85.5 1.6 3.4E-05 39.7 5.1 61 515-576 8-80 (88)
21 KOG0027 Calmodulin and related 82.6 2.6 5.6E-05 41.5 5.8 59 519-578 46-116 (151)
22 PTZ00183 centrin; Provisional 80.8 3.9 8.5E-05 39.4 6.2 56 518-574 91-153 (158)
23 cd05030 calgranulins Calgranul 80.8 4.7 0.0001 36.4 6.3 62 514-576 5-80 (88)
24 cd05031 S-100A10_like S-100A10 77.8 6.2 0.00014 35.7 6.2 60 514-574 5-78 (94)
25 cd00051 EFh EF-hand, calcium b 77.0 5.9 0.00013 30.8 5.2 52 520-572 3-61 (63)
26 PTZ00184 calmodulin; Provision 76.0 5.7 0.00012 37.6 5.7 57 517-574 84-147 (149)
27 PRK12309 transaldolase/EF-hand 75.8 5 0.00011 46.2 6.1 63 509-578 326-388 (391)
28 KOG0034 Ca2+/calmodulin-depend 75.1 5 0.00011 41.7 5.3 62 517-579 66-136 (187)
29 PLN02964 phosphatidylserine de 74.4 5.5 0.00012 48.6 6.2 59 516-575 178-243 (644)
30 KOG0028 Ca2+-binding protein ( 74.3 5 0.00011 40.7 4.8 55 521-576 73-135 (172)
31 PTZ00184 calmodulin; Provision 72.1 8 0.00017 36.6 5.6 58 518-576 48-113 (149)
32 cd05027 S-100B S-100B: S-100B 71.2 12 0.00025 34.0 6.1 62 514-576 5-80 (88)
33 PF13405 EF-hand_6: EF-hand do 70.2 5.4 0.00012 28.8 3.0 26 548-574 2-27 (31)
34 PF13833 EF-hand_8: EF-hand do 68.9 7.5 0.00016 31.2 4.0 42 533-575 4-53 (54)
35 PRK11281 hypothetical protein; 65.2 5.3 0.00012 51.6 3.6 77 234-313 809-898 (1113)
36 PF09279 EF-hand_like: Phospho 63.2 11 0.00024 33.1 4.3 54 520-574 3-68 (83)
37 PTZ00183 centrin; Provisional 62.9 15 0.00033 35.2 5.6 58 518-576 54-119 (158)
38 PF13202 EF-hand_5: EF hand; P 61.8 9.1 0.0002 26.7 2.7 23 549-572 2-24 (25)
39 cd00252 SPARC_EC SPARC_EC; ext 60.2 25 0.00055 33.7 6.3 59 514-573 45-106 (116)
40 KOG0027 Calmodulin and related 50.2 27 0.00058 34.3 5.0 56 517-573 85-147 (151)
41 COG5126 FRQ1 Ca2+-binding prot 49.6 28 0.0006 35.5 4.9 57 514-574 92-155 (160)
42 PRK05585 yajC preprotein trans 46.7 44 0.00094 31.7 5.5 37 658-694 52-89 (106)
43 smart00739 KOW KOW (Kyprides, 45.5 31 0.00068 23.8 3.4 21 658-678 1-26 (28)
44 PF13499 EF-hand_7: EF-hand do 44.0 24 0.00053 29.2 3.1 30 548-578 2-31 (66)
45 PRK05886 yajC preprotein trans 43.9 80 0.0017 30.2 6.8 37 658-694 38-75 (109)
46 smart00054 EFh EF-hand, calciu 40.3 31 0.00068 22.2 2.7 26 548-574 2-27 (29)
47 cd05026 S-100Z S-100Z: S-100Z 40.1 40 0.00088 30.6 4.1 30 547-576 11-41 (93)
48 cd04466 S1_YloQ_GTPase S1_YloQ 38.3 34 0.00074 28.7 3.1 29 657-685 36-67 (68)
49 COG5346 Predicted membrane pro 37.1 1.8E+02 0.004 28.5 8.0 12 629-640 117-128 (136)
50 PRK10929 putative mechanosensi 36.0 16 0.00035 47.3 1.2 77 234-313 806-895 (1109)
51 TIGR00739 yajC preprotein tran 35.4 1.1E+02 0.0023 27.9 6.0 37 658-694 37-74 (84)
52 PF10003 DUF2244: Integral mem 31.6 2.5E+02 0.0054 27.7 8.4 54 613-679 27-80 (140)
53 KOG3130 Uncharacterized conser 30.9 25 0.00054 40.3 1.4 20 157-185 243-262 (514)
54 cd05025 S-100A1 S-100A1: S-100 30.6 80 0.0017 28.3 4.4 29 546-575 9-39 (92)
55 KOG4812 Golgi-associated prote 29.3 1.6E+02 0.0035 32.0 6.9 18 191-208 140-157 (262)
56 PF10577 UPF0560: Uncharacteri 28.8 2E+02 0.0044 36.2 8.5 12 45-56 662-673 (807)
57 PF14023 DUF4239: Protein of u 27.4 3.6E+02 0.0079 27.8 9.3 7 654-660 189-195 (209)
58 PF09926 DUF2158: Uncharacteri 27.2 56 0.0012 27.3 2.5 20 659-678 1-22 (53)
59 COG2139 RPL21A Ribosomal prote 27.0 82 0.0018 29.5 3.8 36 656-691 30-80 (98)
60 PF09953 DUF2187: Uncharacteri 26.9 74 0.0016 27.1 3.2 21 659-679 4-25 (57)
61 PF14812 PBP1_TM: Transmembran 26.9 7.6 0.00017 35.1 -2.8 8 198-205 49-56 (81)
62 PF14801 GCD14_N: tRNA methylt 26.8 34 0.00073 28.8 1.1 19 656-674 3-21 (54)
63 COG4873 Uncharacterized protei 26.2 56 0.0012 28.6 2.4 43 636-682 5-48 (81)
64 PF00467 KOW: KOW motif; Inte 26.1 1.1E+02 0.0023 22.6 3.6 19 661-679 1-24 (32)
65 COG1862 YajC Preprotein transl 25.6 2.2E+02 0.0049 26.7 6.4 37 659-695 44-81 (97)
66 PF04156 IncA: IncA protein; 24.8 2E+02 0.0044 29.2 6.7 13 626-638 39-51 (191)
67 PRK12281 rplX 50S ribosomal pr 24.8 1.6E+02 0.0036 26.3 5.2 22 658-679 6-32 (76)
68 KOG0253 Synaptic vesicle trans 24.7 57 0.0012 38.0 2.8 38 241-278 105-142 (528)
69 cd05031 S-100A10_like S-100A10 24.2 1.2E+02 0.0027 27.3 4.5 29 547-575 9-38 (94)
70 PF12763 EF-hand_4: Cytoskelet 24.0 1.9E+02 0.0041 27.3 5.8 61 516-578 9-74 (104)
71 PRK06531 yajC preprotein trans 23.6 1.7E+02 0.0036 28.3 5.4 38 659-696 37-76 (113)
72 KOG0034 Ca2+/calmodulin-depend 23.1 1.2E+02 0.0026 31.6 4.7 61 512-574 29-94 (187)
73 cd00213 S-100 S-100: S-100 dom 23.0 1E+02 0.0022 27.2 3.6 30 546-575 8-38 (88)
74 PHA02513 V1 structural protein 22.9 2.9E+02 0.0062 26.7 6.6 26 541-567 20-45 (135)
75 PF02559 CarD_CdnL_TRCF: CarD- 22.4 2.2E+02 0.0048 25.9 5.8 42 659-700 2-52 (98)
76 PF08566 Pam17: Mitochondrial 22.0 2.6E+02 0.0057 29.0 6.7 32 616-647 71-102 (173)
77 PF11127 DUF2892: Protein of u 21.3 2.8E+02 0.0061 23.5 5.8 23 595-617 6-28 (66)
78 KOG4223 Reticulocalbin, calume 21.1 1.3E+02 0.0028 34.0 4.6 62 513-575 157-228 (325)
79 PF00575 S1: S1 RNA binding do 20.9 3E+02 0.0066 23.1 6.1 47 659-710 2-48 (74)
80 PF04678 DUF607: Protein of un 20.8 9.2E+02 0.02 24.7 11.2 37 509-551 5-41 (180)
81 PF14654 Epiglycanin_C: Mucin, 20.0 46 0.001 31.2 0.8 42 251-294 18-63 (106)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.3e-111 Score=972.33 Aligned_cols=660 Identities=50% Similarity=0.834 Sum_probs=602.0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCceeeecCCccccccccccccccccccccccccCCCCCCCCCCCCCccccCccccc
Q 003345 102 ESLKRRHSNSTNNNYKDSPQKDSEGEVVKCTSNKSFDRNVSFNKKSALLMTKTKSRLMDLPPERIEPKSGRVVGRSGQLK 181 (828)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~ 181 (828)
+..|+++.++.... .+..+-.+.+++++||++... +...+.+++||++|||-+. .+ +++ +++|+..
T Consensus 51 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~t~~~~~---------~~~~~~~~~s~~f~p~~~~-~~--n~~-~~~~~~~ 116 (714)
T KOG4629|consen 51 GRVRRRSLPYILYS-QEELRRTEYGETVRCTSRKMP---------SMIFFASKRSRDFDPAEPN-NR--NRF-SNSGETT 116 (714)
T ss_pred chhhhccccceecc-cccccccCCcceEEeccccCh---------HhhhhhhhcccccCCCCCC-CC--Ccc-cCccccc
Confidence 55666555443332 223334577899999998443 4678889999999977222 11 555 7899999
Q ss_pred ccCCCCCCCCccCCcCCCCCChhHHhhcccchhhHHHHHHHHHHHHHhheeeeecccCceeeeehhhHHHHHHHHHHHhh
Q 003345 182 SGFIGKNVDEEEEDPLLEEDLPEEYKKEKISIWVLLEWFSLILIIGALVCSLTIDYFKKKKLWKLGLWKWELLILVLICG 261 (828)
Q Consensus 182 ~g~~~~~~~~~~~d~~~~~~~~~~~kk~~~~~~~~~~w~~lv~ii~~Lv~sl~i~~~~~~~l~~l~lWkW~v~~lvl~~G 261 (828)
+|..++..+|+|++++-.+++|++.++.+.+++.+++|+.+++++++|+|+|+++...+..+|++..|+|++.+++++||
T Consensus 117 s~~~a~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~ 196 (714)
T KOG4629|consen 117 SGELAPSEKDEEESIFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITA 196 (714)
T ss_pred cccccCCcccccccccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHH
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcceEeeEeechhheeeeEEEEEeceecchhHHHHHH-HHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Q 003345 262 RLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNCLWLG-LVLIAWHCLFDQRVERETNSDVLKYATKILICLWVG 340 (828)
Q Consensus 262 rlvs~w~v~~~v~lie~nfllrk~vLyfv~Glrk~v~~~~Wl~-lvl~~w~~l~~~~v~~~~~~~~~~~v~kvL~~~lv~ 340 (828)
++++.|.+.+++|++++|++||+++||||||+++.+|+|+|++ +++++|+.+||..+.+.+..+.+.+++++ +|+|++
T Consensus 197 ~lv~~~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~ 275 (714)
T KOG4629|consen 197 VLVSSWFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLIT 275 (714)
T ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHH
Confidence 9999999999999999999999999999999999999999999 99999999999999988777799999999 999999
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHhcCCcCCCCCCCCC
Q 003345 341 VMLWLVKTLLVKVLASSFHVSTYFDRIQEALFNQYLIETLSGPPLIEIQKAEEEQERIVSEVQKLQNAGVTIPPGLKSSV 420 (828)
Q Consensus 341 ~~i~l~k~~lvk~iA~sFH~~~y~dRIqes~~n~~~l~tLs~~~l~~~~~~~~e~~~~~~~~~~~~~~g~~~p~~~~~s~ 420 (828)
++.|++||+++|++|++||+++|++||||++|+||+|++|+|||+. | ++|+..+.+..
T Consensus 276 ~~~~lv~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~~-------e------------~~gr~s~~~~~--- 333 (714)
T KOG4629|consen 276 EFMWLVKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPRE-------E------------DVGRESTFRAI--- 333 (714)
T ss_pred HHHhhchhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCccc-------c------------cccccccceee---
Confidence 9999999999999999999999999999999999999999999972 1 13443111111
Q ss_pred CCCcccccccCCCccccCCCCCCCCccccccCCCCCCCcchhcccccCCCCcchhhHHHHHHHHhcCcccchhhhhhccc
Q 003345 421 LSSPQSAKVIGSGRLQRTPREGKSPKLSHTFSNKDDDGITIDHLHKLNPKNVSAWNMKRLMNIIRHGSLTTLDEQIQDST 500 (828)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~vsa~~~krl~~~vr~~~lst~~~~l~~~~ 500 (828)
.+ +..++.+ ..+|.++++|++|..++|||+|+|+|+.++.+++++++.+.+.+.
T Consensus 334 ----------~s------------~~~~r~~----s~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~ 387 (714)
T KOG4629|consen 334 ----------FS------------PGLSRSG----SAKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLST 387 (714)
T ss_pred ----------cc------------ccccchh----hcccccchhhhhhHhhhcHhhhhHHHHHHhccCcccCCccccccc
Confidence 00 0111111 122888999999999999999999999999999999999988776
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhccCCCCccccHhHHhhcCCHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHh
Q 003345 501 NEDESAPHIKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFRER 580 (828)
Q Consensus 501 ~~~~~~~~i~s~~~AkalAr~If~~~~~~g~~~I~~eDl~~f~~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyrER 580 (828)
.++....+++|+.+|+++|++||+++++||..+++++|+.+|+++|+|+.+|++|++..+.+ |+++.+++|++++|+||
T Consensus 388 ~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ER 466 (714)
T KOG4629|consen 388 SKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRER 466 (714)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHH
Confidence 55566779999999999999999999999999999999999999999999999999886655 99999999999999999
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCcc
Q 003345 581 RALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFD 660 (828)
Q Consensus 581 kaLa~SLkd~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFd 660 (828)
++|+++|+|+++++++|++++.+++.++++++++..+|++++++++.++++.++++|+|+++++++|.|+||+|+.||||
T Consensus 467 k~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyD 546 (714)
T KOG4629|consen 467 KALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYD 546 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHH
Q 003345 661 VGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSF 740 (828)
Q Consensus 661 VGDrV~IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~ 740 (828)
|||||.|||++++|+||+|++|+|.++||++|+||||+|++++|.|++||+.|.+.++|.++..|+.+|+++++++|.+|
T Consensus 547 vGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~y 626 (714)
T KOG4629|consen 547 VGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEY 626 (714)
T ss_pred CCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcCCCCEEEEEecCCCceEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCCC
Q 003345 741 IENKKDHWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGP 820 (828)
Q Consensus 741 v~~~~~~~~p~~~V~v~~i~d~n~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~~ 820 (828)
++++|.+|+|.+.+++.++++.|++.+.+|++|++||||..+++.||.++++++.++++++||+|.++|+++++++.|
T Consensus 627 lks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~-- 704 (714)
T KOG4629|consen 627 LKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP-- 704 (714)
T ss_pred HhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCC
Q 003345 821 PMASDRL 827 (828)
Q Consensus 821 p~~s~~~ 827 (828)
|..+||.
T Consensus 705 ~~~~d~~ 711 (714)
T KOG4629|consen 705 PVSSDRS 711 (714)
T ss_pred CcccCCC
Confidence 7777764
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=2.3e-35 Score=317.39 Aligned_cols=220 Identities=17% Similarity=0.268 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEECC
Q 003345 590 TKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDG 669 (828)
Q Consensus 590 ~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~IdG 669 (828)
..+....+.+++.++++++++++++..+|++++++++++|++++|+||++|++++| |.||++|++++||+|||+|+++|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N-~~sGi~i~~~rpf~vGD~I~i~~ 140 (286)
T PRK10334 62 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSN-LAAGVLLVMFRPFRAGEYVDLGG 140 (286)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEECC
Confidence 45677788999999999999999999999999999999999999999999999999 56999999999999999999999
Q ss_pred eEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCC-c
Q 003345 670 VQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDH-W 748 (828)
Q Consensus 670 ~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~~-~ 748 (828)
..|+|++|++++|++++.||+.++|||+.+.++.|+|||+.+.++..+++.|+|++|++++ ++.+++.++++|.. .
T Consensus 141 ~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~~---~~il~~~~~~~~~vl~ 217 (286)
T PRK10334 141 VAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV---KQILTNIIQSEDRILK 217 (286)
T ss_pred EEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHHH---HHHHHHHHHhCCceec
Confidence 9999999999999999999999999999999999999999988889999999999998876 45677788888764 5
Q ss_pred CCCCEEEEEecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCCC
Q 003345 749 CTNPMFIFKDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPGP 820 (828)
Q Consensus 749 ~p~~~V~v~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~~ 820 (828)
+|.|.+.+.+++++. .+++++|+... .+++.+++++.+++++|+++||++|+|++++++.+.++.
T Consensus 218 ~p~p~v~~~~~~dssi~~~v~~wv~~~-------~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~~~ 283 (286)
T PRK10334 218 DREMTVRLNELGASSINFVVRVWSNSG-------DLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKED 283 (286)
T ss_pred CCCCEEEEEeeeCceEEEEEEEEEecc-------hhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCCcc
Confidence 688999999999976 78888888632 356788999999999999999999999999999877643
No 3
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=334.01 Aligned_cols=223 Identities=17% Similarity=0.253 Sum_probs=202.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEE
Q 003345 587 LNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCE 666 (828)
Q Consensus 587 Lkd~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~ 666 (828)
.+-..+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|++++| |.|||+|++++||+|||+|+
T Consensus 865 ~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsN-fiSGIiIL~erPfrVGD~I~ 943 (1109)
T PRK10929 865 LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFAN-FISGLIILFEKPIRIGDTVT 943 (1109)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCCEEE
Confidence 34456788889999999999999999999999999999999999999999999999999 66999999999999999999
Q ss_pred ECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCC-ceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCC
Q 003345 667 IDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPD-MGDAVEFCIHISTPAEKIAQMKQRILSFIENKK 745 (828)
Q Consensus 667 IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~-~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~ 745 (828)
|+|..|+|++|++++|+++++||+.|+|||+.+.+..|+|||+++. ++..+++.|+|++|++++ ++.+.+.+++++
T Consensus 944 I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~v---~~iL~eaa~~~~ 1020 (1109)
T PRK10929 944 IRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEV---TEILLTAARRCS 1020 (1109)
T ss_pred ECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHHH---HHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999875 688999999999997766 566777888887
Q ss_pred CC-cCCCCEEEEEecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCC
Q 003345 746 DH-WCTNPMFIFKDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPG 819 (828)
Q Consensus 746 ~~-~~p~~~V~v~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~ 819 (828)
.. .+|+|.|.+.+++++. .+++++|+.. .+.++..+++++..|+++|+++||++|||++++|+.+.+.
T Consensus 1021 ~VL~~P~P~V~~~~fgdssi~~elr~wv~~------~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~~ 1090 (1109)
T PRK10929 1021 LVLDNPAPEVFLVDLQQGIQIFELRIYAAE------MGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGG 1090 (1109)
T ss_pred cccCCCCCEEEEEecCCCceEEEEEEEEcC------hhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCCC
Confidence 65 5789999999999865 6788888852 3567889999999999999999999999999999998865
No 4
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=327.75 Aligned_cols=220 Identities=16% Similarity=0.299 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEECC
Q 003345 590 TKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDG 669 (828)
Q Consensus 590 ~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~IdG 669 (828)
..+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|++++| |+|||+|++++||+|||+|+|+|
T Consensus 871 ~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsN-fISGiiIl~eRPfrIGD~I~I~~ 949 (1113)
T PRK11281 871 RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFAN-FVSGLIILFERPVRIGDTVTIGT 949 (1113)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcCCCCEEEECC
Confidence 34566778899999999999999999999999999999999999999999999999 66999999999999999999999
Q ss_pred eEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCC-ceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCC-
Q 003345 670 VQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPD-MGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDH- 747 (828)
Q Consensus 670 ~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~-~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~~- 747 (828)
..|+|++|++++|+++++||+.|+|||+.+.+..|+|||+++. .+..++|.|+|++|++++ ++.+.+.++++|..
T Consensus 950 ~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~v---~~iL~eaa~~~p~Vl 1026 (1113)
T PRK11281 950 FSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKV---RELLLQAATENPRVM 1026 (1113)
T ss_pred EEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHHH---HHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999999999999875 689999999999998775 56677888887754
Q ss_pred cCCCCEEEEEecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCC
Q 003345 748 WCTNPMFIFKDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPG 819 (828)
Q Consensus 748 ~~p~~~V~v~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~ 819 (828)
.+|+|.|.+.+++++. .+++++|+.. .+.++..+++++.+|+++|+++||++|||+++||+.+.+.
T Consensus 1027 ~~P~P~V~~~~fgdssi~~~lr~wv~~------~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~~ 1093 (1113)
T PRK11281 1027 KEPEPQVFFLNFGASTLDHELRLYVRE------LGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQKG 1093 (1113)
T ss_pred cCCCCEEEEEeccCceEEEEEEEEEcC------HhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCCc
Confidence 6789999999999966 7888888863 3567889999999999999999999999999999987543
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=5.3e-32 Score=275.91 Aligned_cols=202 Identities=28% Similarity=0.480 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEECCeEEEEEEEe
Q 003345 599 RFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMN 678 (828)
Q Consensus 599 ~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~IdG~~G~VeeI~ 678 (828)
+++.++++++++++++..+|++.+++++++|++++++||++|++++|++ ||++|++++||++||||+|+|..|.|++|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhcC
Confidence 6788889999999999999999999999999999999999999999955 888999999999999999999999999999
Q ss_pred eeEEEEEEeCCcEEEEeCcccccCcEEeeec-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc-CCCCEEEE
Q 003345 679 ILSTVFLRYDNQKIIFPNSVLATKAIGNYYR-SPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDHW-CTNPMFIF 756 (828)
Q Consensus 679 LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SR-S~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~~~-~p~~~V~v 756 (828)
+++|+++++||+.++|||+.+.+++|.|+|| ++.++..+.+.+++++++++++++.+.+.+.+++++... .+.+.+.+
T Consensus 81 l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (206)
T PF00924_consen 81 LRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVVV 160 (206)
T ss_dssp SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEEE
T ss_pred cceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEEE
Confidence 9999999999999999999999999999999 888999999999999999999999999999999888665 46788888
Q ss_pred EecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcc
Q 003345 757 KDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQY 805 (828)
Q Consensus 757 ~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey 805 (828)
..+++.. .+.+++|+.. +++.+++..|++++.+++++|+++||++
T Consensus 161 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 161 DEIGDSSLEFRIRVYVKN----QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEE-SSSEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccCCceEEEEEEEEEe----CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 8888743 4555555543 4456789999999999999999999975
No 6
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.97 E-value=2.6e-29 Score=295.56 Aligned_cols=219 Identities=17% Similarity=0.197 Sum_probs=183.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEEC
Q 003345 589 DTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEID 668 (828)
Q Consensus 589 d~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~Id 668 (828)
..++....+.+++.+++++++++++|..+|++++++++++|+.|+|+||++|++++| |.||+||++++||+|||+|+++
T Consensus 505 r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N-~isGi~Il~e~pf~vGD~I~v~ 583 (741)
T PRK11465 505 RTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKD-IITGVFIQFENGMNTGDLVTIG 583 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcCCCCEEEEC
Confidence 357888999999999999999999999999999999999999999999999999999 5599999999999999999999
Q ss_pred CeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCC--
Q 003345 669 GVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKD-- 746 (828)
Q Consensus 669 G~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~-- 746 (828)
|+.|+||+|++++|+++++||..++|||+.+.+ |.|++|. ..+..+++.|+|++|.+++.++.+++.+-+.++|.
T Consensus 584 g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~ 660 (741)
T PRK11465 584 PLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR 660 (741)
T ss_pred CeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999999999999999974 9999987 44678899999999999875444333333434443
Q ss_pred --CcCCCCEEEEEecCCCceEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCC
Q 003345 747 --HWCTNPMFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPG 819 (828)
Q Consensus 747 --~~~p~~~V~v~~i~d~n~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~ 819 (828)
...++..+.+.++++ +.+.+++++.++ .+.+|..+.+++..++++|+++||++|+|+. ++.+.|+
T Consensus 661 ~~il~~p~~vgV~~lgd-Ssi~lrvr~~t~-----p~~qw~v~rel~~~IK~~Fde~GIeIP~~tv--~v~~~~~ 727 (741)
T PRK11465 661 GLIIGEPNFAGIVGLTN-TAFTLRVSFTTL-----PLKQWTVRFALDSQVKKHFDLAGVRAPVQTY--QVLPAPG 727 (741)
T ss_pred ccccCCCCeEEEEEecC-ceEEEEEEEEEC-----cchHHHHHHHHHHHHHHHHHHCCCCCCCCce--EeecCCC
Confidence 123344678899988 456666666543 3567999999999999999999999865554 5555544
No 7
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1e-29 Score=296.76 Aligned_cols=234 Identities=17% Similarity=0.267 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHh
Q 003345 569 LKNWVVNVFRERRALAFTLNDTKTAVNKLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFE 648 (828)
Q Consensus 569 l~~~Vv~iyrERkaLa~SLkd~~sav~~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~ 648 (828)
+..|.......|-.+ .......+.+++.+++..++.++.++.+|++.+++-..+|+.++++||++|++++| |.
T Consensus 578 ~~~~L~~~vl~r~~~------~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~N-FV 650 (835)
T COG3264 578 LPGWLEVRVLQRLDL------DAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSN-FV 650 (835)
T ss_pred HHHHHHHHHHHhccc------CcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHH-hh
Confidence 444444444444333 34456678899999999999999999999999999999999999999999999999 78
Q ss_pred hhhhhhhcCCccCCCEEEECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCC-CceEEEEEEEecCCCH
Q 003345 649 AIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSP-DMGDAVEFCIHISTPA 727 (828)
Q Consensus 649 SgIfIfv~hPFdVGDrV~IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~-~~~~~i~~~V~~~T~~ 727 (828)
||++|+++|||+|||+|++++..|+|.+|+.+.|+++++|++.|++||+.+.+..+.||+.++ ..+..+.+.+.|++|+
T Consensus 651 SGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~ 730 (835)
T COG3264 651 SGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDP 730 (835)
T ss_pred hhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999886 5788999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cCCCCEEEEEecCCCc-eEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcc
Q 003345 728 EKIAQMKQRILSFIENKKDH-WCTNPMFIFKDVEELN-RVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQY 805 (828)
Q Consensus 728 ekIe~Lke~I~~~v~~~~~~-~~p~~~V~v~~i~d~n-~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey 805 (828)
+++ ++.+.+.++++|+. .+|.|.+.+.+++++. .+++++|+..- +.+...++++...|.+.|+|+||++
T Consensus 731 ~~V---~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~s~L~fELr~~v~~~------~~~~~~~~~l~~~I~~~fre~gI~i 801 (835)
T COG3264 731 ELV---RELLLEAAREHPRVLKDPAPEVFFTAFGASSLDFELRVYVAEL------GDRMPVRSELNRAILDRFRENGIEI 801 (835)
T ss_pred HHH---HHHHHHHHHhCCCccCCCCCeeEeecccccceeEEEEEEeecc------ccccchHHHHHHHHHHHHHHcCCCC
Confidence 876 56688888888865 7899999999999966 88999998743 4455599999999999999999999
Q ss_pred cCCceEEEeecCC
Q 003345 806 RLWPIDINVRAMP 818 (828)
Q Consensus 806 ~~Pp~~V~l~~~p 818 (828)
||||.++++++.+
T Consensus 802 pfpq~~v~l~~~~ 814 (835)
T COG3264 802 PFPQREVRLKNDG 814 (835)
T ss_pred CCchHheEecCCc
Confidence 9999999999843
No 8
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.2e-27 Score=257.52 Aligned_cols=214 Identities=21% Similarity=0.328 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEEC-CeEEEE
Q 003345 596 KLHRFVNVLIGIITVIIWLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEID-GVQMVV 674 (828)
Q Consensus 596 ~L~~Il~iIv~II~iii~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~Id-G~~G~V 674 (828)
.+.++..++++++++++++..+|++++++++++|..++++||++|++++|+ .+|+++.++|||++||+|+++ +..|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~-~~Gi~il~~~~f~vGD~I~i~~~~~G~V 164 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNL-IAGIFLLLERPFKVGDWIEIGSGVEGTV 164 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHH-HhhhHhheecCcCcCCEEEECCCceEEE
Confidence 788999999999999999999999999999999999999999999999995 588999999999999999999 799999
Q ss_pred EEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCC--cCCCC
Q 003345 675 EEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRSPDMGDAVEFCIHISTPAEKIAQMKQRILSFIENKKDH--WCTNP 752 (828)
Q Consensus 675 eeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS~~~~~~i~~~V~~~T~~ekIe~Lke~I~~~v~~~~~~--~~p~~ 752 (828)
++|++++|+++++||..+++|||.+.+..|.|+++.+..+..+++.++|++++++++.+ +++.++..+.+ ..|.|
T Consensus 165 ~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~ 241 (316)
T COG0668 165 EDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKIEPEP 241 (316)
T ss_pred EEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhcccccccCCCc
Confidence 99999999999999999999999999999999999988889999999999998887555 44444444444 37889
Q ss_pred EEEEEecCCCceEEEEEEEEecCCccchhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEeecCCC
Q 003345 753 MFIFKDVEELNRVRFAIWLSHKMNHQDIGERWERRALLVEEMTKIFRELDIQYRLWPIDINVRAMPG 819 (828)
Q Consensus 753 ~V~v~~i~d~n~l~l~v~v~hksNwQn~~~r~~rRs~L~~~I~~~l~e~GIey~~Pp~~V~l~~~p~ 819 (828)
.+.+.++++ +.+.+.+++.++. ...+..++++...+++++++.||++|+|+++++..+.+.
T Consensus 242 ~v~~~~~~~-~~~~i~v~~~t~~-----~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~~~ 302 (316)
T COG0668 242 VIGVSELGD-SGINIRVRFWTNP-----EDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGELEL 302 (316)
T ss_pred EEEEeeccC-CceEEEEEEEecc-----hhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCCCc
Confidence 999999998 4555555544322 337889999999999999999999999999999554443
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=91.20 E-value=0.37 Score=48.67 Aligned_cols=58 Identities=19% Similarity=0.425 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCCCCccccHhHHhhcC--------CHHHHHHHHHhhccccccccccHHHHHHHHHH
Q 003345 516 KAAARKIFQNVAKPGSKFIYLEDLMRFL--------NEDEASKTMSLFEEASERKKISKSALKNWVVN 575 (828)
Q Consensus 516 kalAr~If~~~~~~g~~~I~~eDl~~f~--------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~ 575 (828)
.+.+.+++..+-. |..+|+.++|+.++ .+||...||.+||.+ .+|+|+..+|+.++..
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHh
Confidence 4678889888876 88999999998765 367899999999976 8999999999998763
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=90.83 E-value=0.57 Score=48.74 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhccCCCCccccHhHHhhc----CC---HHHHHHHHHhhccccccccccHHHHHHHHHHHHHHhhhhhhc
Q 003345 514 EAKAAARKIFQNVAKPGSKFIYLEDLMRF----LN---EDEASKTMSLFEEASERKKISKSALKNWVVNVFRERRALAFT 586 (828)
Q Consensus 514 ~AkalAr~If~~~~~~g~~~I~~eDl~~f----~~---~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyrERkaLa~S 586 (828)
.+...|+++|+.+...+..+|+..|++.- .+ ++...=+|.++|.+ ++|.|++.+|...+..+|..-......
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccccCC
Confidence 47799999999999988899999997642 21 45577889999976 899999999999998888654332222
Q ss_pred ccchhHHHHHHHHHH
Q 003345 587 LNDTKTAVNKLHRFV 601 (828)
Q Consensus 587 Lkd~~sav~~L~~Il 601 (828)
.+..+.....+.++
T Consensus 140 -~~~~~~~~~v~~if 153 (193)
T KOG0044|consen 140 -EDEETPEERVDKIF 153 (193)
T ss_pred -cccccHHHHHHHHH
Confidence 33444444444443
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.62 E-value=0.68 Score=38.29 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=45.3
Q ss_pred HHHHHhccCCCCccccHhHHhhcC-----CHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q 003345 520 RKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVNVF 577 (828)
Q Consensus 520 r~If~~~~~~g~~~I~~eDl~~f~-----~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iy 577 (828)
+++|..+...+..+|+.+++..++ +++++.+.|..+|.. .+|.|+.+++...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHHH
Confidence 457777777778899999988754 567889999999975 689999999988765443
No 12
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=89.14 E-value=0.53 Score=34.13 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHhhccccccccccHHHHHHHHH
Q 003345 547 EASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 547 eA~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
|+.++|..||.+ ++|.|+.+||+..+.
T Consensus 1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKD-GDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCCHHHHHHHHH
Confidence 578899999986 899999999988764
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.53 E-value=1.5 Score=40.04 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcc-CCCCc-cccHhHHhhcCC------------HHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 513 YEAKAAARKIFQNVA-KPGSK-FIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 513 ~~AkalAr~If~~~~-~~g~~-~I~~eDl~~f~~------------~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
..|..-++++|+.+. ..|.. +|+.++|...+. +++..+.+.-+|.+ ++|.|+.++|...+..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHH
Confidence 357788899999998 45665 599999987652 34688999999975 78999999998876543
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=88.23 E-value=0.9 Score=37.88 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=42.0
Q ss_pred HHHHHhccCCCCccccHhHHhhcC---C----HH----HHHHHHHhhccccccccccHHHHHHHH
Q 003345 520 RKIFQNVAKPGSKFIYLEDLMRFL---N----ED----EASKTMSLFEEASERKKISKSALKNWV 573 (828)
Q Consensus 520 r~If~~~~~~g~~~I~~eDl~~f~---~----~e----eA~~af~lFd~~~~nG~Is~~el~~~V 573 (828)
+++|+.+-..+..+|+.+||..++ . ++ .+...|..+|.+ ++|.|+.+||..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhccC
Confidence 578888888899999999998653 1 33 355669999976 79999999998753
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=88.07 E-value=1.8 Score=39.38 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCCccccHhHHhhcC-----CHHHHHHHHHhhccccccccccHHHHHHHHHHHHHH
Q 003345 515 AKAAARKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVNVFRE 579 (828)
Q Consensus 515 AkalAr~If~~~~~~g~~~I~~eDl~~f~-----~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyrE 579 (828)
-..-.+.+|..+...+..+|+.+++.+++ +++++.+.|..+|.. .+|.|+.++|...+..+++-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHHH
Confidence 34567788998888888899999998754 567899999999975 78999999999877666543
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.51 E-value=1.5 Score=40.07 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhccC-CCCccccHhHHhhcC--------CH-HHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAK-PGSKFIYLEDLMRFL--------NE-DEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 514 ~AkalAr~If~~~~~-~g~~~I~~eDl~~f~--------~~-eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
.|...-+.+|+.+.+ .|..+|+.++|...+ .. +++.+.|..+|.+ ++|.|+.++|...+.++
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHH
Confidence 466777888999988 888999999987543 33 6788889899975 78999999998877654
No 17
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=85.89 E-value=2.4 Score=37.62 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccC--CCCccccHhHHhhcCC------------HHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAK--PGSKFIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 514 ~AkalAr~If~~~~~--~g~~~I~~eDl~~f~~------------~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
+..+-.+.+|..+.. .|..+|+.++|..++. .+++.+.+..||.. .+|.|+.++|...+...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHH
Confidence 344567888988888 6888999999886541 57789999999875 68999999998877655
No 18
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=85.65 E-value=2.5 Score=38.12 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcc-CCCCcc-ccHhHHhhcC------------CHHHHHHHHHhhccccccccccHHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVA-KPGSKF-IYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVVN 575 (828)
Q Consensus 514 ~AkalAr~If~~~~-~~g~~~-I~~eDl~~f~------------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~ 575 (828)
.|..-.+.+|..+. +.|..+ |+.++|...+ .++++.+.|..+|.+ ++|.|+.++|...+.+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHH
Confidence 45666788999996 788884 9999988654 246789999999975 7899999999876644
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=85.60 E-value=2.1 Score=38.92 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=47.2
Q ss_pred HHHHHHHHHHh-ccCCCCc-cccHhHHhhcCCH------------HHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 515 AKAAARKIFQN-VAKPGSK-FIYLEDLMRFLNE------------DEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 515 AkalAr~If~~-~~~~g~~-~I~~eDl~~f~~~------------eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
|...=..+|+. ..+.|.. +|+.++|..++.. +++.+.+.-+|.+ .+|.|+.++|..++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 44555778888 4455654 9999999987643 4688999999875 78999999999887655
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=85.47 E-value=1.6 Score=39.69 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhccC-CC-CccccHhHHhhcC----------CHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 515 AKAAARKIFQNVAK-PG-SKFIYLEDLMRFL----------NEDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 515 AkalAr~If~~~~~-~g-~~~I~~eDl~~f~----------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
|-..-=.+|+.++. .| ..+|+.++|..++ .++|+.+.|.-+|.+ ++|.|+.++|...+.++
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHH
Confidence 33344467888876 55 5699999988654 457899999999975 78999999998877554
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.61 E-value=2.6 Score=41.46 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=45.9
Q ss_pred HHHHHHhccCCCCccccHhHHhhcCC------------HHHHHHHHHhhccccccccccHHHHHHHHHHHHH
Q 003345 519 ARKIFQNVAKPGSKFIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVNVFR 578 (828)
Q Consensus 519 Ar~If~~~~~~g~~~I~~eDl~~f~~------------~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyr 578 (828)
.+.++..+-..|...|..++|...+. .++..+||.+||.+ ++|.||.++|+..+.+...
T Consensus 46 l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 46 LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCC
Confidence 44556666667788899999886542 23889999999976 8999999999998876653
No 22
>PTZ00183 centrin; Provisional
Probab=80.78 E-value=3.9 Score=39.38 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCCCccccHhHHhhc-------CCHHHHHHHHHhhccccccccccHHHHHHHHH
Q 003345 518 AARKIFQNVAKPGSKFIYLEDLMRF-------LNEDEASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 518 lAr~If~~~~~~g~~~I~~eDl~~f-------~~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
..+.+|..+...+..+|+.+++..+ +.++++...|..||.+ ++|.|+.++|...+.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHh
Confidence 4578898888888889999999865 4577899999999865 689999999877553
No 23
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=80.77 E-value=4.7 Score=36.35 Aligned_cols=62 Identities=11% Similarity=0.238 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccCCC--CccccHhHHhhcCC------------HHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAKPG--SKFIYLEDLMRFLN------------EDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 514 ~AkalAr~If~~~~~~g--~~~I~~eDl~~f~~------------~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
+|-.-.-.+|+..+... ..+|+.++|...+. ++++.+.|..+|.+ .+|.|+.++|...+...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 45566677888887653 46899999886553 67799999999975 78999999998877654
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=77.78 E-value=6.2 Score=35.73 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhccC-CC-CccccHhHHhhcC------------CHHHHHHHHHhhccccccccccHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAK-PG-SKFIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 514 ~AkalAr~If~~~~~-~g-~~~I~~eDl~~f~------------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
.|...-+.+|..+.. .| ..+|+.++|...+ .++++.+.+..+|.+ ++|.|+.++|...+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHH
Confidence 355666778888875 65 5799999998643 346788999999875 789999999987654
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=76.96 E-value=5.9 Score=30.78 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHhccCCCCccccHhHHhhcC-------CHHHHHHHHHhhccccccccccHHHHHHH
Q 003345 520 RKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNW 572 (828)
Q Consensus 520 r~If~~~~~~g~~~I~~eDl~~f~-------~~eeA~~af~lFd~~~~nG~Is~~el~~~ 572 (828)
+.+|..+...+...|+.+|+...+ ..+++..+|..++.. ++|.|+.++|...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHH
Confidence 456776666666789998887543 346678899999865 6899999988764
No 26
>PTZ00184 calmodulin; Provisional
Probab=76.00 E-value=5.7 Score=37.56 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCCCCccccHhHHhhcC-------CHHHHHHHHHhhccccccccccHHHHHHHHH
Q 003345 517 AAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 517 alAr~If~~~~~~g~~~I~~eDl~~f~-------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
..++.+|+.+...|..+|+.+++..++ ..+++...|..+|.. ++|.|+.++|...+.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHHh
Confidence 345777888877788889999987543 467788888888865 678899988876543
No 27
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=75.82 E-value=5 Score=46.17 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCccccHhHHhhcCCHHHHHHHHHhhccccccccccHHHHHHHHHHHHH
Q 003345 509 IKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKTMSLFEEASERKKISKSALKNWVVNVFR 578 (828)
Q Consensus 509 i~s~~~AkalAr~If~~~~~~g~~~I~~eDl~~f~~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyr 578 (828)
+.+-...+..++.+|..+-..|..+|+.+|+.. +...|..||.+ ++|.|+.++|...+-..|+
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 334445678889999999899999999999853 67789999975 7899999999998887776
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=75.13 E-value=5 Score=41.66 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=48.7
Q ss_pred HHHHHHHHhccCCCCcc-ccHhHHhhcC----C----HHHHHHHHHhhccccccccccHHHHHHHHHHHHHH
Q 003345 517 AAARKIFQNVAKPGSKF-IYLEDLMRFL----N----EDEASKTMSLFEEASERKKISKSALKNWVVNVFRE 579 (828)
Q Consensus 517 alAr~If~~~~~~g~~~-I~~eDl~~f~----~----~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyrE 579 (828)
-++.+|+..+...+... |+.+++.+.+ + .+...-||.++|.. ++|.|+++++...+.....+
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMVGE 136 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHcc
Confidence 57788888887666555 9999998754 1 23688899999976 79999999999988776653
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=74.37 E-value=5.5 Score=48.57 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCCCCccccHhHHhhcC-------CHHHHHHHHHhhccccccccccHHHHHHHHHH
Q 003345 516 KAAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVVN 575 (828)
Q Consensus 516 kalAr~If~~~~~~g~~~I~~eDl~~f~-------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~ 575 (828)
...++++|..+...|...|+.++|..++ .++|..++|..||.+ ++|.|+.++|+..+..
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 4568889988888888899999997543 467799999999976 7999999999987765
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=74.28 E-value=5 Score=40.69 Aligned_cols=55 Identities=33% Similarity=0.518 Sum_probs=43.7
Q ss_pred HHHHhccCCCCccccHhHHhhcC--------CHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 521 KIFQNVAKPGSKFIYLEDLMRFL--------NEDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 521 ~If~~~~~~g~~~I~~eDl~~f~--------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
++-.-+-+.|...|+.+||.+.+ +.+|+..||.+||.+ ++|+||..+|+....+.
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHHHHHh
Confidence 34444567788899999998764 468999999999965 89999999988866544
No 31
>PTZ00184 calmodulin; Provisional
Probab=72.14 E-value=8 Score=36.57 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCCCccccHhHHhhcCC--------HHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 518 AARKIFQNVAKPGSKFIYLEDLMRFLN--------EDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 518 lAr~If~~~~~~g~~~I~~eDl~~f~~--------~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
..+++|..+...+...|+.+++..++. .+.+..+|..+|.+ ++|.|+.+++..++..+
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHHH
Confidence 557788877777778899999986432 24688999999975 78999999998877543
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=71.17 E-value=12 Score=34.04 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcc-CCCCc-cccHhHHhhcC------------CHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVA-KPGSK-FIYLEDLMRFL------------NEDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 514 ~AkalAr~If~~~~-~~g~~-~I~~eDl~~f~------------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
.|-.--+.+|+.+. +.|.. +|..++|...+ .++++.+.+.-+|.+ ++|.|+.++|...+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHH
Confidence 35566778888887 57777 59998886543 245689999999876 78999999998776543
No 33
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=70.20 E-value=5.4 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHhhccccccccccHHHHHHHHH
Q 003345 548 ASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 548 A~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
-.++|..||.+ .+|.|+.++|...+.
T Consensus 2 l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 46799999976 799999999998765
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=68.86 E-value=7.5 Score=31.15 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=32.2
Q ss_pred cccHhHHhhc--------CCHHHHHHHHHhhccccccccccHHHHHHHHHH
Q 003345 533 FIYLEDLMRF--------LNEDEASKTMSLFEEASERKKISKSALKNWVVN 575 (828)
Q Consensus 533 ~I~~eDl~~f--------~~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~ 575 (828)
.|+.++|..+ ++++++...|..||.+ ++|.|+.++|...+.+
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQR 53 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHHh
Confidence 4555555531 5678899999999976 8999999999887653
No 35
>PRK11281 hypothetical protein; Provisional
Probab=65.22 E-value=5.3 Score=51.59 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=43.2
Q ss_pred eecccCceeeeeh-------------hhHHHHHHHHHHHhhhhhhhhhcceEeeEeechhheeeeEEEEEeceecchhHH
Q 003345 234 TIDYFKKKKLWKL-------------GLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNC 300 (828)
Q Consensus 234 ~i~~~~~~~l~~l-------------~lWkW~v~~lvl~~Grlvs~w~v~~~v~lie~nfllrk~vLyfv~Glrk~v~~~ 300 (828)
.++.+++.++|+. .++.....+++++.|++++.++.+++-.++.....++....|+ +.+.+...
T Consensus 809 ~~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~~~---i~~li~y~ 885 (1113)
T PRK11281 809 VFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTSYA---ITTLLTYI 885 (1113)
T ss_pred HHHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHH---HHHHHHHH
Confidence 3556677777763 4666666667776676666666543322211222222222232 34556667
Q ss_pred HHHHHHHHHHHHh
Q 003345 301 LWLGLVLIAWHCL 313 (828)
Q Consensus 301 ~Wl~lvl~~w~~l 313 (828)
+|+..+++++..+
T Consensus 886 I~~i~iliaL~~l 898 (1113)
T PRK11281 886 IIAVGAVTAFSTL 898 (1113)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888777755
No 36
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=63.22 E-value=11 Score=33.15 Aligned_cols=54 Identities=17% Similarity=0.490 Sum_probs=40.3
Q ss_pred HHHHHhccCCCCccccHhHHhhcCC---------HHHHHHHHHhhcccc---ccccccHHHHHHHHH
Q 003345 520 RKIFQNVAKPGSKFIYLEDLMRFLN---------EDEASKTMSLFEEAS---ERKKISKSALKNWVV 574 (828)
Q Consensus 520 r~If~~~~~~g~~~I~~eDl~~f~~---------~eeA~~af~lFd~~~---~nG~Is~~el~~~Vv 574 (828)
+.||.+.+. +..+++.++|.+|+. .+++.+.+.-|+... ..+.++.+.|.+++.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 578999977 889999999999983 345667777775432 357788888877764
No 37
>PTZ00183 centrin; Provisional
Probab=62.89 E-value=15 Score=35.20 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCCCccccHhHHhhcC--------CHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q 003345 518 AARKIFQNVAKPGSKFIYLEDLMRFL--------NEDEASKTMSLFEEASERKKISKSALKNWVVNV 576 (828)
Q Consensus 518 lAr~If~~~~~~g~~~I~~eDl~~f~--------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~i 576 (828)
....+|..+...+...|+.+++...+ ..++...+|..||.+ ++|.|+..+|..++...
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHh
Confidence 46677777777778889999887543 245678999999975 78999999999888643
No 38
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=61.84 E-value=9.1 Score=26.71 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.1
Q ss_pred HHHHHhhccccccccccHHHHHHH
Q 003345 549 SKTMSLFEEASERKKISKSALKNW 572 (828)
Q Consensus 549 ~~af~lFd~~~~nG~Is~~el~~~ 572 (828)
+++|..+|.+ ++|.|+.+|+...
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHH
Confidence 4578999975 7999999998874
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=60.15 E-value=25 Score=33.73 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhccCCCCccccHhHHhhc-CC--HHHHHHHHHhhccccccccccHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAKPGSKFIYLEDLMRF-LN--EDEASKTMSLFEEASERKKISKSALKNWV 573 (828)
Q Consensus 514 ~AkalAr~If~~~~~~g~~~I~~eDl~~f-~~--~eeA~~af~lFd~~~~nG~Is~~el~~~V 573 (828)
.-+.-++-.|..+-..+..+|+.++|..+ +. +..+...|..+|.+ .+|.||.+|+...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 34566788888888888899999999975 32 24578899999965 78999999988866
No 40
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=50.22 E-value=27 Score=34.31 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCCCCccccHhHHhhcC-------CHHHHHHHHHhhccccccccccHHHHHHHH
Q 003345 517 AAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWV 573 (828)
Q Consensus 517 alAr~If~~~~~~g~~~I~~eDl~~f~-------~~eeA~~af~lFd~~~~nG~Is~~el~~~V 573 (828)
.--+..|+-+-..|..+|+.++|..++ ..++..+.+..+|.+ ++|.|+.++++..+
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d-~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD-GDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC-CCCeEeHHHHHHHH
Confidence 344566666778889999999999876 457888899999875 79999888776644
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=49.56 E-value=28 Score=35.46 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhccCCCCccccHhHHhhcC-------CHHHHHHHHHhhccccccccccHHHHHHHHH
Q 003345 514 EAKAAARKIFQNVAKPGSKFIYLEDLMRFL-------NEDEASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 514 ~AkalAr~If~~~~~~g~~~I~~eDl~~f~-------~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
+--.-|.++| -+.+..+|..++|.+++ +++|+.+.+..++.+ ++|.|+.++|+..+.
T Consensus 92 Eel~~aF~~f---D~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~~ 155 (160)
T COG5126 92 EELREAFKLF---DKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHHHh---CCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHHh
Confidence 3344555555 57777899999999875 568899999999975 799999999887653
No 42
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.66 E-value=44 Score=31.73 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=27.0
Q ss_pred CccCCCEEE-ECCeEEEEEEEeeeEEEEEEeCCcEEEE
Q 003345 658 PFDVGDRCE-IDGVQMVVEEMNILSTVFLRYDNQKIIF 694 (828)
Q Consensus 658 PFdVGDrV~-IdG~~G~VeeI~LlsT~frt~Dg~~V~I 694 (828)
-..+||+|. ++|..|+|.+|+=-+.++...+|.++.+
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~ 89 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKI 89 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 358999995 5899999999987444455556655554
No 43
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=45.49 E-value=31 Score=23.80 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.8
Q ss_pred CccCCCEEEEC-----CeEEEEEEEe
Q 003345 658 PFDVGDRCEID-----GVQMVVEEMN 678 (828)
Q Consensus 658 PFdVGDrV~Id-----G~~G~VeeI~ 678 (828)
+|.+||.|.|- |..|.|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 57899999983 5788888874
No 44
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=43.95 E-value=24 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHHH
Q 003345 548 ASKTMSLFEEASERKKISKSALKNWVVNVFR 578 (828)
Q Consensus 548 A~~af~lFd~~~~nG~Is~~el~~~Vv~iyr 578 (828)
..++|..||.+ ++|.|+.++|..++.....
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhcc
Confidence 36799999976 7999999999998876653
No 45
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.87 E-value=80 Score=30.24 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=25.5
Q ss_pred CccCCCEEEE-CCeEEEEEEEeeeEEEEEEeCCcEEEE
Q 003345 658 PFDVGDRCEI-DGVQMVVEEMNILSTVFLRYDNQKIIF 694 (828)
Q Consensus 658 PFdVGDrV~I-dG~~G~VeeI~LlsT~frt~Dg~~V~I 694 (828)
-.++||+|.. +|..|+|.+|+=-+.++...+|.++.+
T Consensus 38 ~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 38 SLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3589999975 789999999985444444445555443
No 46
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=40.34 E-value=31 Score=22.19 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHhhccccccccccHHHHHHHHH
Q 003345 548 ASKTMSLFEEASERKKISKSALKNWVV 574 (828)
Q Consensus 548 A~~af~lFd~~~~nG~Is~~el~~~Vv 574 (828)
...+|..+|.+ .+|.|+..++..++.
T Consensus 2 ~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 35678888865 678999998887654
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=40.13 E-value=40 Score=30.64 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=23.8
Q ss_pred HHHHHHHhhccccccc-cccHHHHHHHHHHH
Q 003345 547 EASKTMSLFEEASERK-KISKSALKNWVVNV 576 (828)
Q Consensus 547 eA~~af~lFd~~~~nG-~Is~~el~~~Vv~i 576 (828)
++.++|..||..+++| .|+.++|+..+.+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 4678899999555787 59999999987653
No 48
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=38.28 E-value=34 Score=28.71 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCccCCCEEEEC---CeEEEEEEEeeeEEEEE
Q 003345 657 HPFDVGDRCEID---GVQMVVEEMNILSTVFL 685 (828)
Q Consensus 657 hPFdVGDrV~Id---G~~G~VeeI~LlsT~fr 685 (828)
.+.-|||||.++ +..+.|+++--+.|.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 446899999875 45678888877777664
No 49
>COG5346 Predicted membrane protein [Function unknown]
Probab=37.11 E-value=1.8e+02 Score=28.47 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhh
Q 003345 629 SSQVVVVAFIFG 640 (828)
Q Consensus 629 Gs~~Lal~Fafq 640 (828)
++..+|++|+++
T Consensus 117 tv~alAlaFv~~ 128 (136)
T COG5346 117 TVFALALAFVIG 128 (136)
T ss_pred hHHHHHHHHHHh
Confidence 444556666654
No 50
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.05 E-value=16 Score=47.28 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=44.6
Q ss_pred eecccCceeeee-------------hhhHHHHHHHHHHHhhhhhhhhhcceEeeEeechhheeeeEEEEEeceecchhHH
Q 003345 234 TIDYFKKKKLWK-------------LGLWKWELLILVLICGRLVSSWIVRIIVFCIERNFLLRKRVLYFVYGVRKAVQNC 300 (828)
Q Consensus 234 ~i~~~~~~~l~~-------------l~lWkW~v~~lvl~~Grlvs~w~v~~~v~lie~nfllrk~vLyfv~Glrk~v~~~ 300 (828)
.+..+.++++|. +.++...+.+++++.|++++.|+.+++-..+.+...+....-|| +.+.+..+
T Consensus 806 a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~ 882 (1109)
T PRK10929 806 AFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYL 882 (1109)
T ss_pred HHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHH
Confidence 345668888886 66788777788888888888887665532221111111112222 22345556
Q ss_pred HHHHHHHHHHHHh
Q 003345 301 LWLGLVLIAWHCL 313 (828)
Q Consensus 301 ~Wl~lvl~~w~~l 313 (828)
+|++.++++...+
T Consensus 883 I~~ig~l~~L~~l 895 (1109)
T PRK10929 883 LMLIGGLVGFSMI 895 (1109)
T ss_pred HHHHHHHHHHHHc
Confidence 7776666666654
No 51
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=35.38 E-value=1.1e+02 Score=27.89 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=26.4
Q ss_pred CccCCCEEEE-CCeEEEEEEEeeeEEEEEEeCCcEEEE
Q 003345 658 PFDVGDRCEI-DGVQMVVEEMNILSTVFLRYDNQKIIF 694 (828)
Q Consensus 658 PFdVGDrV~I-dG~~G~VeeI~LlsT~frt~Dg~~V~I 694 (828)
-..+||+|.. +|..|+|.+|+=-+-++...+|..+.+
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3589999986 679999999986544555555555543
No 52
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=31.56 E-value=2.5e+02 Score=27.68 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=33.1
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhhcCCccCCCEEEECCeEEEEEEEee
Q 003345 613 WLLILGIATTKFLLFISSQVVVVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNI 679 (828)
Q Consensus 613 ~L~ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~IdG~~G~VeeI~L 679 (828)
.+.++......++.++|.-.++++++|.-.. +-=+..++|.|++....|.+.+-
T Consensus 27 a~~f~~~GaW~Vl~F~glev~~l~~a~~~~~-------------r~~~~~E~I~l~~~~~~~~~~~~ 80 (140)
T PF10003_consen 27 AIAFLLMGAWPVLPFAGLEVLALWYAFRRNY-------------RHARDYERITLSPDDLLVVRVDP 80 (140)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------------hhCcCcEEEEEeCCeeEEEEEcC
Confidence 3333333345666666666666666655333 33456788999887777777653
No 53
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=25 Score=40.31 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=11.1
Q ss_pred ccCCCCCCCCCCCCCccccCcccccccCC
Q 003345 157 RLMDLPPERIEPKSGRVVGRSGQLKSGFI 185 (828)
Q Consensus 157 r~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (828)
|||+-|-.. |.|||-.+|+.
T Consensus 243 ~l~~~~~~t---------p~s~~r~~~~n 262 (514)
T KOG3130|consen 243 CLKDVASST---------PFSGQRNSQLN 262 (514)
T ss_pred HhhcCCCcC---------cchhhhhhccc
Confidence 677765322 45666555555
No 54
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=30.61 E-value=80 Score=28.31 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHhhc-cccccc-cccHHHHHHHHHH
Q 003345 546 DEASKTMSLFE-EASERK-KISKSALKNWVVN 575 (828)
Q Consensus 546 eeA~~af~lFd-~~~~nG-~Is~~el~~~Vv~ 575 (828)
++..++|.+|| .+ ++| .|+.++|+..+..
T Consensus 9 ~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKE-GDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhccc-CCCCeECHHHHHHHHHH
Confidence 56789999997 64 789 5999999997753
No 55
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=29.25 E-value=1.6e+02 Score=31.96 Aligned_cols=18 Identities=17% Similarity=-0.023 Sum_probs=12.2
Q ss_pred CccCCcCCCCCChhHHhh
Q 003345 191 EEEEDPLLEEDLPEEYKK 208 (828)
Q Consensus 191 ~~~~d~~~~~~~~~~~kk 208 (828)
+|++|+.+|++-.|..+-
T Consensus 140 ~~~~~~~nd~~~~D~L~v 157 (262)
T KOG4812|consen 140 LENSDGRNDEIDIDGLRV 157 (262)
T ss_pred cccCCCccchhccccccc
Confidence 677777777766666543
No 56
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=28.82 E-value=2e+02 Score=36.18 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=5.8
Q ss_pred ccccccccchhH
Q 003345 45 EISLDMDLEMDE 56 (828)
Q Consensus 45 ~~~~~~~~~~~~ 56 (828)
+.+||-.++|.|
T Consensus 662 DaSLDSGVDmnE 673 (807)
T PF10577_consen 662 DASLDSGVDMNE 673 (807)
T ss_pred cCCCCCCccccc
Confidence 444554444444
No 57
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=27.44 E-value=3.6e+02 Score=27.82 Aligned_cols=7 Identities=29% Similarity=0.505 Sum_probs=5.5
Q ss_pred hhcCCcc
Q 003345 654 FVMHPFD 660 (828)
Q Consensus 654 fv~hPFd 660 (828)
-++|||.
T Consensus 189 ~ld~Pf~ 195 (209)
T PF14023_consen 189 DLDNPFS 195 (209)
T ss_pred HhcCCCC
Confidence 5789985
No 58
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.16 E-value=56 Score=27.30 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=17.4
Q ss_pred ccCCCEEEE--CCeEEEEEEEe
Q 003345 659 FDVGDRCEI--DGVQMVVEEMN 678 (828)
Q Consensus 659 FdVGDrV~I--dG~~G~VeeI~ 678 (828)
|.+||.|.+ +|-.|+|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999998 67899999874
No 59
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=27.05 E-value=82 Score=29.53 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=27.3
Q ss_pred cCCccCCCEEEEC---------------CeEEEEEEEeeeEEEEEEeCCcE
Q 003345 656 MHPFDVGDRCEID---------------GVQMVVEEMNILSTVFLRYDNQK 691 (828)
Q Consensus 656 ~hPFdVGDrV~Id---------------G~~G~VeeI~LlsT~frt~Dg~~ 691 (828)
..-|++||.|.|+ |..|+|+.+.=.+-.+.-.+|.+
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k 80 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNK 80 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCc
Confidence 3569999999884 46799998887777766666643
No 60
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=26.94 E-value=74 Score=27.13 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.4
Q ss_pred ccCCCEEEE-CCeEEEEEEEee
Q 003345 659 FDVGDRCEI-DGVQMVVEEMNI 679 (828)
Q Consensus 659 FdVGDrV~I-dG~~G~VeeI~L 679 (828)
-+|||.|++ +|.+|.|+.+.=
T Consensus 4 a~vGdiIefk~g~~G~V~kv~e 25 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVYE 25 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEec
Confidence 379999999 578999988763
No 61
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=26.89 E-value=7.6 Score=35.13 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=0.0
Q ss_pred CCCCChhH
Q 003345 198 LEEDLPEE 205 (828)
Q Consensus 198 ~~~~~~~~ 205 (828)
+++.+|..
T Consensus 49 eee~m~rK 56 (81)
T PF14812_consen 49 EEEPMPRK 56 (81)
T ss_dssp --------
T ss_pred hccccccc
Confidence 34455554
No 62
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=26.84 E-value=34 Score=28.78 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=9.9
Q ss_pred cCCccCCCEEEECCeEEEE
Q 003345 656 MHPFDVGDRCEIDGVQMVV 674 (828)
Q Consensus 656 ~hPFdVGDrV~IdG~~G~V 674 (828)
..||++||||.+-+..|.-
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~ 21 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRK 21 (54)
T ss_dssp --S--TT-EEEEEETT--E
T ss_pred cCCCCCCCEEEEccCCCCe
Confidence 3699999999997766553
No 63
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=56 Score=28.60 Aligned_cols=43 Identities=30% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHhhhhhhhhHhhhhhhhhcCCccCCCEEEE-CCeEEEEEEEeeeEE
Q 003345 636 AFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEI-DGVQMVVEEMNILST 682 (828)
Q Consensus 636 ~Fafq~t~kn~f~SgIfIfv~hPFdVGDrV~I-dG~~G~VeeI~LlsT 682 (828)
+|.+++..-. +.+. ..+.--.|||.|+. ||..|.|+.++=-+.
T Consensus 5 ~~~~~~a~~~-~~~~---~~m~~a~vgniief~dgl~g~vek~nensv 48 (81)
T COG4873 5 AKYFQKALLC-LKER---KLMKIAKVGNIIEFKDGLTGVVEKVNENSV 48 (81)
T ss_pred HHHHHhhhhh-hcee---eEeeeeeccceEEEcccceeeeeeecCCcE
Confidence 3455555444 3332 23445679999998 789999999875443
No 64
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=26.06 E-value=1.1e+02 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.1
Q ss_pred CCCEEEE-----CCeEEEEEEEee
Q 003345 661 VGDRCEI-----DGVQMVVEEMNI 679 (828)
Q Consensus 661 VGDrV~I-----dG~~G~VeeI~L 679 (828)
+||+|.| .|..|.|.+|.-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 6999999 578999999864
No 65
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.59 E-value=2.2e+02 Score=26.71 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=26.5
Q ss_pred ccCCCEEEE-CCeEEEEEEEeeeEEEEEEeCCcEEEEe
Q 003345 659 FDVGDRCEI-DGVQMVVEEMNILSTVFLRYDNQKIIFP 695 (828)
Q Consensus 659 FdVGDrV~I-dG~~G~VeeI~LlsT~frt~Dg~~V~IP 695 (828)
...||.|.. +|..|+|.+|+=-+-++.--+|..+.+-
T Consensus 44 L~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 44 LKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFE 81 (97)
T ss_pred ccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEE
Confidence 579999975 6799999999875544444466665543
No 66
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.83 E-value=2e+02 Score=29.22 Aligned_cols=13 Identities=0% Similarity=0.345 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 003345 626 LFISSQVVVVAFI 638 (828)
Q Consensus 626 a~lGs~~Lal~Fa 638 (828)
+.+|.+.+|+|.+
T Consensus 39 ~~lg~~~lAlg~v 51 (191)
T PF04156_consen 39 FILGIALLALGVV 51 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555544
No 67
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=24.82 E-value=1.6e+02 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=18.6
Q ss_pred CccCCCEEEE-----CCeEEEEEEEee
Q 003345 658 PFDVGDRCEI-----DGVQMVVEEMNI 679 (828)
Q Consensus 658 PFdVGDrV~I-----dG~~G~VeeI~L 679 (828)
++..||+|.| -|..|.|.+|..
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~ 32 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLP 32 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999998 368899999865
No 68
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=24.74 E-value=57 Score=38.01 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.7
Q ss_pred eeeeehhhHHHHHHHHHHHhhhhhhhhhcceEeeEeec
Q 003345 241 KKLWKLGLWKWELLILVLICGRLVSSWIVRIIVFCIER 278 (828)
Q Consensus 241 ~~l~~l~lWkW~v~~lvl~~Grlvs~w~v~~~v~lie~ 278 (828)
..+|+.+-=.-.++-++++||.+++.|...++..-+-|
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr 142 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR 142 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence 35688887778889999999999999998887765433
No 69
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=24.24 E-value=1.2e+02 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHhhccccc-cccccHHHHHHHHHH
Q 003345 547 EASKTMSLFEEASE-RKKISKSALKNWVVN 575 (828)
Q Consensus 547 eA~~af~lFd~~~~-nG~Is~~el~~~Vv~ 575 (828)
+..++|..||..++ +|.|+..+++..+..
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 46789999986234 699999999987754
No 70
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=23.97 E-value=1.9e+02 Score=27.28 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHhccCCCCccccHhHHhhcC-----CHHHHHHHHHhhccccccccccHHHHHHHHHHHHH
Q 003345 516 KAAARKIFQNVAKPGSKFIYLEDLMRFL-----NEDEASKTMSLFEEASERKKISKSALKNWVVNVFR 578 (828)
Q Consensus 516 kalAr~If~~~~~~g~~~I~~eDl~~f~-----~~eeA~~af~lFd~~~~nG~Is~~el~~~Vv~iyr 578 (828)
+.-=..+|..+. ++..+|+-++...|| +.+.-.+++.+-|.+ .+|.++.+||.-++-=+++
T Consensus 9 ~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 9 KQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHHH
Confidence 344567898875 567789999888765 467788899999975 7899999999887655543
No 71
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=23.63 E-value=1.7e+02 Score=28.27 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=25.1
Q ss_pred ccCCCEEE-ECCeEEEEEEEeee-EEEEEEeCCcEEEEeC
Q 003345 659 FDVGDRCE-IDGVQMVVEEMNIL-STVFLRYDNQKIIFPN 696 (828)
Q Consensus 659 FdVGDrV~-IdG~~G~VeeI~Ll-sT~frt~Dg~~V~IPN 696 (828)
.++||+|. ++|..|+|.+|+-- .|+....+|..+.+--
T Consensus 37 Lk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~v~r 76 (113)
T PRK06531 37 IQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLTFEL 76 (113)
T ss_pred cCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEEEEh
Confidence 47999997 68899999999852 2332223665555433
No 72
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=23.09 E-value=1.2e+02 Score=31.61 Aligned_cols=61 Identities=10% Similarity=0.239 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhccCC-CCccccHhHHhhcCC---HHHHHHHHHhhcccccccc-ccHHHHHHHHH
Q 003345 512 EYEAKAAARKIFQNVAKP-GSKFIYLEDLMRFLN---EDEASKTMSLFEEASERKK-ISKSALKNWVV 574 (828)
Q Consensus 512 ~~~AkalAr~If~~~~~~-g~~~I~~eDl~~f~~---~eeA~~af~lFd~~~~nG~-Is~~el~~~Vv 574 (828)
..|..+| ...|+++..+ ++.+|+.+++...+. .--+...+.+|+.. .+|. |+.++|++.+.
T Consensus 29 ~~EI~~L-~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~-~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 29 ANEIERL-YERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTD-GNGDPVDFEEFVRLLS 94 (187)
T ss_pred HHHHHHH-HHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhcc-CCCCccCHHHHHHHHh
Confidence 3444444 5678889888 889999999986542 23488999999975 6787 99999999664
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=22.96 E-value=1e+02 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=24.1
Q ss_pred HHHHHHHHhhccc-cccccccHHHHHHHHHH
Q 003345 546 DEASKTMSLFEEA-SERKKISKSALKNWVVN 575 (828)
Q Consensus 546 eeA~~af~lFd~~-~~nG~Is~~el~~~Vv~ 575 (828)
++..++|..||.. +++|.|+.+++...+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 4578899999982 37999999999887754
No 74
>PHA02513 V1 structural protein V1; Reviewed
Probab=22.92 E-value=2.9e+02 Score=26.70 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHhhccccccccccHH
Q 003345 541 RFLNEDEASKTMSLFEEASERKKISKS 567 (828)
Q Consensus 541 ~f~~~eeA~~af~lFd~~~~nG~Is~~ 567 (828)
+||..|+..+|..+|=..| +|.|-.+
T Consensus 20 kyft~eqi~ea~kif~qtw-dgnii~s 45 (135)
T PHA02513 20 KYFTKEQIAEATKIFYQTW-DGNIISS 45 (135)
T ss_pred hhcCHHHHHHHHHHHHHhc-CchHHHH
Confidence 5778888888888887776 5777665
No 75
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=22.43 E-value=2.2e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=25.6
Q ss_pred ccCCCEEEECCe-EEEEEEEeeeE--------EEEEEeCCcEEEEeCcccc
Q 003345 659 FDVGDRCEIDGV-QMVVEEMNILS--------TVFLRYDNQKIIFPNSVLA 700 (828)
Q Consensus 659 FdVGDrV~IdG~-~G~VeeI~Lls--------T~frt~Dg~~V~IPNS~L~ 700 (828)
|++||.|.=.+. -|.|++|.-.. -++.-.++..+++|=..+.
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~~ 52 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNAD 52 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCGG
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCChh
Confidence 789999987653 56666665443 3344445557888876643
No 76
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=22.01 E-value=2.6e+02 Score=28.95 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=24.4
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHhhhhhhhhH
Q 003345 616 ILGIATTKFLLFISSQVVVVAFIFGNTCKTVF 647 (828)
Q Consensus 616 ilGi~~t~lLa~lGs~~Lal~Fafq~t~kn~f 647 (828)
++|+++--++...+++..++||.+|.++.+.+
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45677666666777778889999999988843
No 77
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=21.33 E-value=2.8e+02 Score=23.46 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003345 595 NKLHRFVNVLIGIITVIIWLLIL 617 (828)
Q Consensus 595 ~~L~~Il~iIv~II~iii~L~il 617 (828)
...++++++++.++.++..+...
T Consensus 6 g~~dR~~R~~~G~~l~~~~~~~~ 28 (66)
T PF11127_consen 6 GTTDRIVRIIIGIVLLALGLLGL 28 (66)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc
Confidence 34677777777766665554444
No 78
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=1.3e+02 Score=33.96 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=44.5
Q ss_pred HHHHHHH--HHHHHhccCCCCccccHhHHhhcCCHHH--------HHHHHHhhccccccccccHHHHHHHHHH
Q 003345 513 YEAKAAA--RKIFQNVAKPGSKFIYLEDLMRFLNEDE--------ASKTMSLFEEASERKKISKSALKNWVVN 575 (828)
Q Consensus 513 ~~AkalA--r~If~~~~~~g~~~I~~eDl~~f~~~ee--------A~~af~lFd~~~~nG~Is~~el~~~Vv~ 575 (828)
...+-++ ++-|+..-..|...+++++|..|+.+|| ..+.+.=.|.. ++|+|+.+|++.-+-+
T Consensus 157 ~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn-~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN-GDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC-CCCceeHHHHHhHHhh
Confidence 3344444 4567766677888999999999999886 34556666764 7899999998765433
No 79
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=20.92 E-value=3e+02 Score=23.10 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=33.1
Q ss_pred ccCCCEEEECCeEEEEEEEeeeEEEEEEeCCcEEEEeCcccccCcEEeeecC
Q 003345 659 FDVGDRCEIDGVQMVVEEMNILSTVFLRYDNQKIIFPNSVLATKAIGNYYRS 710 (828)
Q Consensus 659 FdVGDrV~IdG~~G~VeeI~LlsT~frt~Dg~~V~IPNS~L~tk~I~N~SRS 710 (828)
+++||.+ .|+|.++.=..-.+.-.+|..-++|.+.+....+.+.+..
T Consensus 2 ~~~G~iv-----~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~ 48 (74)
T PF00575_consen 2 LKEGDIV-----EGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEV 48 (74)
T ss_dssp SSTTSEE-----EEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGT
T ss_pred CCCCCEE-----EEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccc
Confidence 4567766 4999998874444433348889999999998866555554
No 80
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=20.77 E-value=9.2e+02 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCccccHhHHhhcCCHHHHHHH
Q 003345 509 IKTEYEAKAAARKIFQNVAKPGSKFIYLEDLMRFLNEDEASKT 551 (828)
Q Consensus 509 i~s~~~AkalAr~If~~~~~~g~~~I~~eDl~~f~~~eeA~~a 551 (828)
++++.+|...|+.+ .....-|.+.|.. ++.+++..++
T Consensus 5 ~~~~~~~~~~~~~l-----~~~g~vi~~~~~v-~L~P~~v~~~ 41 (180)
T PF04678_consen 5 IRDEDEGIEFAAAL-----DESGVVIALSDSV-YLRPKQVKEA 41 (180)
T ss_pred ccchhhHHHHHHHh-----CCCCCEEEECCee-eECHHHHHHH
Confidence 66778888888877 2333445666655 6777653333
No 81
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.02 E-value=46 Score=31.19 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhhhhhcceEeeEeechhh-eeee---EEEEEecee
Q 003345 251 WELLILVLICGRLVSSWIVRIIVFCIERNFL-LRKR---VLYFVYGVR 294 (828)
Q Consensus 251 W~v~~lvl~~Grlvs~w~v~~~v~lie~nfl-lrk~---vLyfv~Glr 294 (828)
||++++++.+--...|.++.+++++ ||++ ||.. .+|+-+|.-
T Consensus 18 WeIfLItLasVvvavGl~aGLfFcv--R~~lslrn~~~ta~Y~PHg~n 63 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLFFCV--RNSLSLRNTFDTAVYRPHGPN 63 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hhccccccccccceEccCCcc
Confidence 7898888877766667776655544 5554 6654 788877644
Done!