Query 003347
Match_columns 828
No_of_seqs 540 out of 2807
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 3.1E-29 1.1E-33 277.6 26.0 265 558-823 47-338 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 7.3E-29 2.5E-33 284.4 24.4 278 544-822 3-363 (457)
3 3nmz_A APC variant protein; pr 100.0 2.4E-28 8.1E-33 278.6 27.9 260 561-821 166-452 (458)
4 3l6x_A Catenin delta-1; cateni 100.0 2.4E-28 8.1E-33 284.9 27.4 279 543-822 48-387 (584)
5 1xm9_A Plakophilin 1; armadill 100.0 8.5E-27 2.9E-31 267.3 27.3 281 542-824 43-454 (457)
6 3now_A UNC-45 protein, SD10334 99.9 2.7E-26 9.3E-31 275.8 28.6 279 541-819 419-737 (810)
7 3now_A UNC-45 protein, SD10334 99.9 3.6E-26 1.2E-30 274.8 29.1 279 542-821 494-784 (810)
8 3ul1_B Importin subunit alpha- 99.9 3.1E-26 1.1E-30 266.1 27.6 278 542-819 99-387 (510)
9 3tpo_A Importin subunit alpha- 99.9 7.5E-26 2.6E-30 264.0 30.1 278 542-819 118-406 (529)
10 3l6x_A Catenin delta-1; cateni 99.9 7.6E-26 2.6E-30 263.8 29.5 279 542-822 89-479 (584)
11 3nmz_A APC variant protein; pr 99.9 2.4E-26 8.1E-31 262.2 24.1 279 541-819 68-408 (458)
12 3nmw_A APC variant protein; AR 99.9 4.4E-26 1.5E-30 252.4 22.9 240 542-781 72-338 (354)
13 4b8j_A Importin subunit alpha- 99.9 3.5E-24 1.2E-28 248.9 32.1 279 542-820 116-401 (528)
14 4hxt_A De novo protein OR329; 99.9 3.6E-24 1.2E-28 222.5 27.5 238 543-780 2-244 (252)
15 4hxt_A De novo protein OR329; 99.9 6.1E-24 2.1E-28 220.8 28.6 240 585-824 2-246 (252)
16 3tpo_A Importin subunit alpha- 99.9 1E-23 3.6E-28 245.9 32.7 278 542-819 161-449 (529)
17 3ul1_B Importin subunit alpha- 99.9 1.1E-23 3.7E-28 244.8 31.4 278 542-819 142-430 (510)
18 4b8j_A Importin subunit alpha- 99.9 1.7E-23 5.7E-28 243.2 31.3 277 543-819 74-358 (528)
19 1wa5_B Importin alpha subunit; 99.9 2.3E-23 7.9E-28 242.4 32.6 279 542-820 129-413 (530)
20 4db8_A Armadillo-repeat protei 99.9 3.3E-24 1.1E-28 224.1 22.9 234 544-777 13-251 (252)
21 2jdq_A Importin alpha-1 subuni 99.9 1E-22 3.4E-27 230.3 31.4 276 543-819 64-347 (450)
22 4db8_A Armadillo-repeat protei 99.9 2.7E-23 9.1E-28 217.2 23.7 235 585-819 12-251 (252)
23 1wa5_B Importin alpha subunit; 99.9 1.3E-22 4.5E-27 236.1 31.2 278 542-819 86-370 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 2.7E-22 9.1E-27 226.7 32.3 278 542-820 106-391 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 7.4E-22 2.5E-26 228.1 28.5 278 542-820 16-340 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.4E-21 4.9E-26 225.7 29.5 279 542-821 58-387 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.4E-21 4.7E-26 233.2 27.7 277 542-819 13-336 (644)
28 3tt9_A Plakophilin-2; cell adh 99.9 4.8E-22 1.7E-26 206.6 19.4 194 543-737 8-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 6.3E-21 2.1E-25 227.5 31.0 279 542-821 55-384 (644)
30 3opb_A SWI5-dependent HO expre 99.9 8.7E-21 3E-25 224.3 23.8 279 542-820 375-729 (778)
31 3tt9_A Plakophilin-2; cell adh 99.9 3.1E-21 1.1E-25 200.6 17.6 192 586-778 9-230 (233)
32 2z6g_A B-catenin; FULL-length, 99.9 1.8E-20 6E-25 228.5 26.7 275 542-819 191-472 (780)
33 4db6_A Armadillo repeat protei 99.9 2.8E-20 9.4E-25 189.0 22.7 195 583-777 10-209 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 2.3E-20 7.8E-25 227.5 25.1 275 542-820 149-429 (780)
35 4db6_A Armadillo repeat protei 99.9 7.8E-20 2.7E-24 185.6 24.0 196 624-819 10-209 (210)
36 2f42_A STIP1 homology and U-bo 99.8 1.6E-21 5.5E-26 192.9 9.6 96 206-310 82-177 (179)
37 2kr4_A Ubiquitin conjugation f 99.8 1.2E-21 4.1E-26 171.7 5.6 74 233-307 8-81 (85)
38 1wgm_A Ubiquitin conjugation f 99.8 2.8E-21 9.6E-26 173.8 7.8 76 233-309 16-92 (98)
39 2kre_A Ubiquitin conjugation f 99.8 1.4E-21 4.7E-26 176.5 5.4 75 232-307 22-96 (100)
40 3opb_A SWI5-dependent HO expre 99.8 1.5E-18 5.1E-23 205.4 23.8 277 541-818 332-682 (778)
41 3m62_A Ubiquitin conjugation f 99.8 1.6E-19 5.4E-24 215.4 12.4 133 142-308 823-960 (968)
42 1t1h_A Gspef-atpub14, armadill 99.8 1.9E-19 6.4E-24 155.1 6.4 76 234-309 3-78 (78)
43 1xqr_A HSPBP1 protein; armadil 99.8 1.6E-17 5.5E-22 179.2 22.6 223 599-821 54-289 (296)
44 2c2l_A CHIP, carboxy terminus 99.8 3.5E-18 1.2E-22 182.6 14.9 80 231-310 200-279 (281)
45 1xqr_A HSPBP1 protein; armadil 99.8 2.7E-17 9.3E-22 177.5 21.2 182 639-820 53-239 (296)
46 2yu4_A E3 SUMO-protein ligase 99.7 1.4E-18 4.9E-23 155.2 5.6 74 235-308 3-85 (94)
47 3ztg_A E3 ubiquitin-protein li 99.6 2.1E-15 7.1E-20 133.9 8.3 77 233-309 7-86 (92)
48 2bay_A PRE-mRNA splicing facto 99.6 2.6E-16 8.9E-21 128.5 2.2 54 239-293 3-57 (61)
49 3htk_C E3 SUMO-protein ligase 99.5 8E-15 2.7E-19 151.5 6.8 70 236-305 178-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.5 2.2E-14 7.7E-19 134.6 5.1 70 236-305 49-119 (124)
51 3grl_A General vesicular trans 99.5 6.5E-12 2.2E-16 145.4 26.0 272 542-817 20-340 (651)
52 1z6u_A NP95-like ring finger p 99.4 5.8E-14 2E-18 136.1 5.1 69 236-304 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.4 1.9E-13 6.4E-18 123.0 3.8 70 236-306 19-89 (99)
54 3grl_A General vesicular trans 99.3 1.6E-10 5.4E-15 133.9 25.8 277 542-818 59-393 (651)
55 3lrq_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 119.8 3.8 71 236-306 19-90 (100)
56 2ckl_A Polycomb group ring fin 99.3 8E-13 2.7E-17 120.8 4.2 67 236-303 12-83 (108)
57 2egp_A Tripartite motif-contai 99.3 7.5E-14 2.6E-18 120.0 -2.8 64 235-298 8-77 (79)
58 2ecw_A Tripartite motif-contai 99.3 3.9E-13 1.3E-17 116.9 1.0 65 234-298 14-83 (85)
59 3hct_A TNF receptor-associated 99.3 1E-12 3.5E-17 122.1 3.8 68 235-302 14-81 (118)
60 1jm7_B BARD1, BRCA1-associated 99.3 6.8E-13 2.3E-17 123.2 2.0 68 236-306 19-87 (117)
61 4ayc_A E3 ubiquitin-protein li 99.3 9.3E-12 3.2E-16 118.9 9.7 64 237-303 51-114 (138)
62 2ckl_B Ubiquitin ligase protei 99.3 1.4E-12 4.9E-17 128.5 3.5 69 236-304 51-121 (165)
63 2csy_A Zinc finger protein 183 99.3 1.6E-12 5.5E-17 112.4 3.3 63 235-299 11-73 (81)
64 3l11_A E3 ubiquitin-protein li 99.3 8.4E-13 2.9E-17 122.1 1.7 69 235-303 11-86 (115)
65 2ecv_A Tripartite motif-contai 99.3 5.6E-13 1.9E-17 115.8 0.4 65 234-298 14-83 (85)
66 2yur_A Retinoblastoma-binding 99.3 3.4E-12 1.2E-16 108.4 4.9 60 233-292 9-71 (74)
67 2ecy_A TNF receptor-associated 99.2 4.7E-12 1.6E-16 105.0 5.3 55 235-289 11-65 (66)
68 1jm7_A BRCA1, breast cancer ty 99.2 3.1E-12 1.1E-16 117.4 3.6 68 237-304 19-88 (112)
69 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.9E-16 104.5 5.8 58 234-292 10-68 (72)
70 3ltm_A Alpha-REP4; protein eng 99.2 8.2E-10 2.8E-14 111.8 20.2 188 542-780 18-206 (211)
71 1oyz_A Hypothetical protein YI 99.2 8.7E-10 3E-14 116.7 20.5 224 543-817 23-248 (280)
72 3ltm_A Alpha-REP4; protein eng 99.2 9.9E-10 3.4E-14 111.2 19.2 188 584-822 18-206 (211)
73 2ysl_A Tripartite motif-contai 99.2 2.2E-11 7.6E-16 102.8 5.0 55 235-289 16-72 (73)
74 3ltj_A Alpharep-4; protein eng 99.1 2.1E-09 7.1E-14 108.0 20.2 184 542-776 13-197 (201)
75 1g25_A CDK-activating kinase a 99.1 2.3E-11 8E-16 100.4 4.5 55 238-292 2-61 (65)
76 1rmd_A RAG1; V(D)J recombinati 99.1 1.3E-11 4.4E-16 114.3 3.1 66 236-301 20-86 (116)
77 3hcs_A TNF receptor-associated 99.1 2E-11 6.9E-16 120.7 4.6 67 235-301 14-80 (170)
78 3knv_A TNF receptor-associated 99.1 7.6E-12 2.6E-16 119.9 1.0 66 235-300 27-101 (141)
79 3ltj_A Alpharep-4; protein eng 99.1 2.2E-09 7.4E-14 107.8 18.7 184 585-819 14-198 (201)
80 2ysj_A Tripartite motif-contai 99.1 8.2E-11 2.8E-15 96.4 5.0 46 235-280 16-63 (63)
81 3ng2_A RNF4, snurf, ring finge 99.1 5.5E-11 1.9E-15 99.7 3.5 58 235-293 6-70 (71)
82 1oyz_A Hypothetical protein YI 99.0 1.4E-08 4.9E-13 107.3 20.6 199 582-818 20-220 (280)
83 2ct2_A Tripartite motif protei 99.0 3.9E-10 1.3E-14 98.6 5.7 54 234-287 10-69 (88)
84 4fdd_A Transportin-1; heat rep 99.0 2.5E-09 8.7E-14 131.1 14.7 272 542-819 173-471 (852)
85 2ecj_A Tripartite motif-contai 99.0 3.6E-10 1.2E-14 90.8 4.3 46 235-280 11-58 (58)
86 2d8t_A Dactylidin, ring finger 99.0 2.6E-10 8.7E-15 95.9 3.4 52 235-287 11-62 (71)
87 2xeu_A Ring finger protein 4; 98.9 1.6E-10 5.5E-15 94.6 1.8 54 238-292 2-62 (64)
88 4fdd_A Transportin-1; heat rep 98.9 8E-09 2.7E-13 126.7 15.5 273 541-820 126-430 (852)
89 2ea6_A Ring finger protein 4; 98.9 8.1E-10 2.8E-14 91.8 4.3 52 234-286 10-68 (69)
90 1e4u_A Transcriptional repress 98.9 1.2E-09 4.1E-14 93.5 5.0 55 235-289 7-65 (78)
91 2ect_A Ring finger protein 126 98.8 1.5E-09 5.2E-14 92.7 4.2 57 235-292 11-70 (78)
92 1b3u_A Protein (protein phosph 98.8 1.1E-07 3.6E-12 110.5 21.0 227 542-777 163-392 (588)
93 1b3u_A Protein (protein phosph 98.8 4.4E-08 1.5E-12 113.7 17.5 264 542-819 323-587 (588)
94 4gmo_A Putative uncharacterize 98.8 5E-08 1.7E-12 117.0 16.8 192 626-818 34-257 (684)
95 2vgl_B AP-2 complex subunit be 98.8 2.3E-07 7.8E-12 109.3 20.8 263 542-817 120-417 (591)
96 1ibr_B P95, importin beta-1 su 98.8 6.5E-08 2.2E-12 108.7 15.1 274 542-821 127-439 (462)
97 4ap4_A E3 ubiquitin ligase RNF 98.7 2.7E-09 9.3E-14 100.4 2.5 55 237-292 5-66 (133)
98 1chc_A Equine herpes virus-1 r 98.7 5.7E-09 2E-13 86.6 3.8 48 238-286 4-52 (68)
99 4gmo_A Putative uncharacterize 98.7 8.2E-08 2.8E-12 115.1 15.2 191 586-777 35-258 (684)
100 2ecn_A Ring finger protein 141 98.7 2.6E-09 9E-14 89.2 1.3 52 235-288 11-62 (70)
101 1bor_A Transcription factor PM 98.7 2.8E-09 9.6E-14 85.2 1.2 47 237-287 4-50 (56)
102 2ecm_A Ring finger and CHY zin 98.7 7.5E-09 2.5E-13 82.0 3.6 47 238-285 4-54 (55)
103 2ep4_A Ring finger protein 24; 98.7 1.7E-08 5.7E-13 85.3 5.2 52 235-287 11-65 (74)
104 2kiz_A E3 ubiquitin-protein li 98.7 2.8E-08 9.5E-13 82.7 6.1 52 235-287 10-64 (69)
105 1v87_A Deltex protein 2; ring- 98.6 2.6E-08 8.8E-13 91.5 5.1 51 236-286 22-94 (114)
106 1iym_A EL5; ring-H2 finger, ub 98.6 1.7E-08 5.8E-13 80.0 3.3 49 236-285 2-54 (55)
107 2l0b_A E3 ubiquitin-protein li 98.6 2.3E-08 7.7E-13 88.2 4.1 50 236-286 37-89 (91)
108 1x4j_A Ring finger protein 38; 98.6 2E-08 6.9E-13 85.1 3.1 50 237-287 21-73 (75)
109 2y1n_A E3 ubiquitin-protein li 98.5 2.6E-08 8.9E-13 109.4 3.1 50 239-288 332-381 (389)
110 4ic3_A E3 ubiquitin-protein li 98.5 1.8E-08 6.1E-13 85.4 1.3 44 238-286 23-67 (74)
111 4ap4_A E3 ubiquitin ligase RNF 98.5 2.9E-08 9.8E-13 93.3 0.9 57 236-293 69-132 (133)
112 2ecg_A Baculoviral IAP repeat- 98.4 9.1E-08 3.1E-12 81.1 2.6 45 238-287 24-69 (75)
113 2vgl_B AP-2 complex subunit be 98.4 5E-06 1.7E-10 97.8 18.4 255 542-819 12-268 (591)
114 1qgr_A Protein (importin beta 98.4 6.6E-06 2.3E-10 100.2 19.9 273 542-820 127-438 (876)
115 1wim_A KIAA0161 protein; ring 98.4 5.9E-08 2E-12 86.0 0.7 67 237-304 3-83 (94)
116 1qgr_A Protein (importin beta 98.3 1.2E-05 4.1E-10 98.0 20.8 273 542-820 171-480 (876)
117 1w63_A Adapter-related protein 98.3 7.9E-06 2.7E-10 96.7 17.0 250 543-819 107-379 (618)
118 2bpt_A Importin beta-1 subunit 98.3 2.5E-06 8.7E-11 103.7 12.9 270 542-819 368-668 (861)
119 1w63_A Adapter-related protein 98.3 2.3E-05 7.9E-10 92.7 20.5 221 542-778 141-415 (618)
120 3b2a_A TON_1937, putative unch 98.3 4E-05 1.4E-09 77.8 18.6 220 542-771 32-255 (265)
121 2vje_A E3 ubiquitin-protein li 98.3 4.1E-07 1.4E-11 74.6 3.4 50 236-286 5-57 (64)
122 1ibr_B P95, importin beta-1 su 98.3 2.5E-06 8.6E-11 95.7 10.9 268 544-820 91-396 (462)
123 2bpt_A Importin beta-1 subunit 98.2 1.7E-05 5.8E-10 96.4 18.9 274 541-820 132-441 (861)
124 2ecl_A Ring-box protein 2; RNF 98.2 5E-07 1.7E-11 77.8 3.5 48 238-286 14-76 (81)
125 2vje_B MDM4 protein; proto-onc 98.2 7.4E-07 2.5E-11 72.9 3.0 48 238-286 6-56 (63)
126 1u6g_C TIP120 protein, CAND1; 98.2 4.2E-06 1.4E-10 106.7 11.2 272 542-820 5-285 (1230)
127 2yho_A E3 ubiquitin-protein li 98.1 6.4E-07 2.2E-11 76.7 0.7 45 238-287 17-62 (79)
128 3dpl_R Ring-box protein 1; ubi 98.0 3.2E-06 1.1E-10 76.5 4.4 47 238-285 36-100 (106)
129 3t6p_A Baculoviral IAP repeat- 98.0 7.7E-07 2.6E-11 97.2 0.3 45 237-286 293-338 (345)
130 1u6g_C TIP120 protein, CAND1; 98.0 1.7E-05 5.8E-10 101.1 11.6 228 542-780 47-287 (1230)
131 2qk2_A LP04448P; mini spindles 98.0 4.7E-05 1.6E-09 78.6 12.6 181 547-736 19-205 (242)
132 2qk2_A LP04448P; mini spindles 97.9 6.9E-05 2.4E-09 77.3 12.8 181 630-819 19-205 (242)
133 1ho8_A Vacuolar ATP synthase s 97.9 0.00017 5.8E-09 81.1 16.2 229 589-818 171-475 (480)
134 2ea5_A Cell growth regulator w 97.9 7E-06 2.4E-10 68.1 3.2 47 236-287 12-59 (68)
135 2vgl_A Adaptor protein complex 97.8 0.00072 2.5E-08 79.9 21.5 253 542-817 145-431 (621)
136 2vgl_A Adaptor protein complex 97.8 0.0012 4.2E-08 78.0 21.7 254 543-819 111-398 (621)
137 2d8s_A Cellular modulator of i 97.7 2.7E-05 9.2E-10 66.7 5.0 52 236-287 12-71 (80)
138 1te4_A Conserved protein MTH18 97.7 4.4E-06 1.5E-10 78.1 -0.3 120 543-694 12-131 (131)
139 1te4_A Conserved protein MTH18 97.6 5.3E-06 1.8E-10 77.5 -0.8 120 583-733 10-130 (131)
140 2qk1_A Protein STU2; STU2P, XM 97.6 0.00035 1.2E-08 72.9 12.9 186 548-736 21-220 (249)
141 4a0k_B E3 ubiquitin-protein li 97.6 9.5E-06 3.3E-10 74.6 0.0 45 240-285 49-111 (117)
142 1ho8_A Vacuolar ATP synthase s 97.6 0.0015 5.1E-08 73.5 17.6 230 547-778 171-477 (480)
143 3dad_A FH1/FH2 domain-containi 97.6 0.0031 1.1E-07 67.7 19.4 175 543-717 118-314 (339)
144 3b2a_A TON_1937, putative unch 97.5 0.0014 4.9E-08 66.5 15.0 216 585-817 33-259 (265)
145 2qk1_A Protein STU2; STU2P, XM 97.5 0.00029 9.9E-09 73.5 10.3 189 631-820 21-221 (249)
146 4ady_A RPN2, 26S proteasome re 97.4 0.0081 2.8E-07 73.1 22.0 235 544-820 430-677 (963)
147 3dad_A FH1/FH2 domain-containi 97.4 0.0065 2.2E-07 65.3 18.6 178 631-808 123-325 (339)
148 2db0_A 253AA long hypothetical 97.3 0.14 4.7E-06 50.2 25.1 212 542-777 31-246 (253)
149 3tjz_B Coatomer subunit gamma; 97.2 0.0068 2.3E-07 66.4 16.7 244 544-819 69-316 (355)
150 2iw3_A Elongation factor 3A; a 97.2 0.017 5.7E-07 71.1 21.4 260 543-820 54-325 (986)
151 3tjz_B Coatomer subunit gamma; 96.7 0.0088 3E-07 65.4 12.2 237 543-810 104-344 (355)
152 4ady_A RPN2, 26S proteasome re 96.3 0.33 1.1E-05 59.2 23.4 239 542-817 471-717 (963)
153 1vyx_A ORF K3, K3RING; zinc-bi 96.3 0.0038 1.3E-07 50.2 4.5 49 238-286 5-59 (60)
154 2ct0_A Non-SMC element 1 homol 96.3 0.0036 1.2E-07 52.5 4.5 47 240-286 16-64 (74)
155 2db0_A 253AA long hypothetical 96.2 1 3.5E-05 44.2 24.1 213 585-820 32-247 (253)
156 4ffb_C Protein STU2; tubulin f 96.1 0.12 3.9E-06 54.2 16.3 184 548-736 14-212 (278)
157 3vk6_A E3 ubiquitin-protein li 96.0 0.0042 1.4E-07 54.5 3.7 46 241-286 3-49 (101)
158 3oc3_A Helicase MOT1, MOT1; re 96.0 0.0088 3E-07 67.7 7.0 238 544-815 175-432 (800)
159 3k1l_B Fancl; UBC, ring, RWD, 95.6 0.0016 5.4E-08 69.7 -0.6 48 239-286 308-373 (381)
160 2fv2_A RCD1 required for cell 95.4 0.44 1.5E-05 49.1 16.4 226 544-775 4-266 (268)
161 2iw3_A Elongation factor 3A; a 95.2 0.52 1.8E-05 58.0 19.2 217 544-776 96-323 (986)
162 3ebb_A Phospholipase A2-activa 95.0 0.41 1.4E-05 51.1 15.6 186 586-772 104-301 (304)
163 3ebb_A Phospholipase A2-activa 94.6 0.53 1.8E-05 50.2 15.3 137 679-817 160-304 (304)
164 3i2d_A E3 SUMO-protein ligase 94.6 0.02 6.9E-07 62.1 4.2 63 238-300 248-314 (371)
165 4ffb_C Protein STU2; tubulin f 94.4 0.48 1.6E-05 49.4 14.4 184 631-820 14-213 (278)
166 2of3_A ZYG-9; multifunctional 94.2 1 3.6E-05 46.9 16.1 178 547-736 50-236 (266)
167 1upk_A MO25 protein; transfera 94.2 0.97 3.3E-05 48.5 15.8 200 542-741 77-288 (341)
168 1wa5_C Importin alpha RE-expor 94.0 0.17 5.8E-06 62.6 11.1 250 558-817 376-668 (960)
169 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.024 8E-07 50.2 2.4 34 238-271 2-38 (101)
170 4fo9_A E3 SUMO-protein ligase 93.4 0.051 1.7E-06 58.8 4.2 64 237-300 213-280 (360)
171 1lrv_A LRV, leucine-rich repea 92.4 0.16 5.5E-06 52.5 6.2 46 750-814 196-241 (244)
172 1wa5_C Importin alpha RE-expor 92.1 1.3 4.3E-05 54.8 15.0 218 554-776 416-669 (960)
173 2fv2_A RCD1 required for cell 91.4 2 6.8E-05 44.3 12.8 145 561-706 74-234 (268)
174 2x1g_F Cadmus; transport prote 90.5 7.9 0.00027 47.5 19.8 132 638-778 476-616 (971)
175 2x1g_F Cadmus; transport prote 89.8 11 0.00039 46.0 20.5 212 597-818 476-721 (971)
176 2x19_B Importin-13; nuclear tr 89.4 11 0.00039 45.9 19.9 136 636-779 459-601 (963)
177 3eg5_B Protein diaphanous homo 88.7 13 0.00046 40.6 17.9 169 547-716 70-273 (383)
178 3u0r_A Apoptosis inhibitor 5; 88.6 10 0.00035 42.6 16.6 128 546-692 32-159 (507)
179 2x19_B Importin-13; nuclear tr 88.0 27 0.00092 42.5 22.0 132 595-736 459-599 (963)
180 2of3_A ZYG-9; multifunctional 87.9 3 0.0001 43.4 11.3 130 677-818 97-235 (266)
181 1upk_A MO25 protein; transfera 87.6 12 0.00039 40.2 15.7 201 620-821 72-285 (341)
182 3nw0_A Non-structural maintena 86.8 0.5 1.7E-05 48.6 4.5 49 239-287 180-230 (238)
183 2f31_A Diaphanous protein homo 86.3 17 0.00058 36.7 15.8 134 583-716 41-207 (233)
184 2f31_A Diaphanous protein homo 84.0 11 0.00037 38.2 13.1 125 640-765 68-216 (233)
185 3pwf_A Rubrerythrin; non heme 83.7 6.9 0.00024 37.9 10.7 32 234-285 133-164 (170)
186 3oc3_A Helicase MOT1, MOT1; re 83.5 2.5 8.6E-05 48.3 8.4 162 544-732 264-432 (800)
187 3m1i_C Exportin-1; heat repeat 82.4 36 0.0012 42.1 19.5 218 544-778 17-264 (1049)
188 3eg5_B Protein diaphanous homo 82.0 22 0.00077 38.8 15.4 134 625-759 108-275 (383)
189 2kkx_A Uncharacterized protein 81.4 0.93 3.2E-05 39.5 3.1 58 232-290 19-83 (102)
190 2bnx_A Diaphanous protein homo 80.6 40 0.0014 36.8 16.8 134 584-717 46-212 (386)
191 3u0r_A Apoptosis inhibitor 5; 80.4 8.9 0.00031 43.0 11.3 120 678-815 39-159 (507)
192 4hat_C Exportin-1; heat repeat 79.2 51 0.0017 40.8 19.0 218 543-777 16-263 (1023)
193 1lrv_A LRV, leucine-rich repea 78.7 1.8 6.1E-05 44.6 4.9 44 588-648 101-144 (244)
194 3l9t_A Putative uncharacterize 78.5 32 0.0011 34.9 13.9 179 539-746 33-218 (240)
195 3ibv_A Exportin-T; karyopherin 75.9 97 0.0033 38.1 20.1 207 556-779 21-262 (980)
196 3gjx_A Exportin-1; transport, 74.9 63 0.0022 40.2 18.0 219 543-778 28-276 (1073)
197 2bnx_A Diaphanous protein homo 74.9 25 0.00087 38.4 13.1 124 640-764 72-219 (386)
198 3m1i_C Exportin-1; heat repeat 73.8 38 0.0013 41.9 16.0 190 585-778 344-570 (1049)
199 3c2g_A SYS-1 protein; beta-cat 71.1 69 0.0024 34.4 14.4 110 692-802 267-379 (619)
200 3qml_C Protein SLS1, nucleotid 69.9 58 0.002 34.3 13.6 147 668-819 23-189 (315)
201 3a6p_A Exportin-5; exportin-5, 69.6 1E+02 0.0034 38.9 18.6 219 543-779 11-278 (1204)
202 3ibv_A Exportin-T; karyopherin 69.6 66 0.0023 39.6 16.5 269 548-822 198-527 (980)
203 1x5b_A Signal transducing adap 69.1 12 0.00042 35.8 7.8 73 541-613 50-124 (163)
204 1weo_A Cellulose synthase, cat 68.9 8.2 0.00028 32.9 5.5 48 239-286 16-70 (93)
205 4hat_C Exportin-1; heat repeat 68.5 19 0.00066 44.6 11.4 139 638-779 465-620 (1023)
206 1mhq_A ADP-ribosylation factor 66.2 14 0.00048 34.8 7.4 73 541-613 36-115 (148)
207 3ldz_A STAM-1, signal transduc 64.9 14 0.00048 34.4 7.1 72 542-613 41-113 (140)
208 3l9t_A Putative uncharacterize 63.8 66 0.0023 32.7 12.2 143 544-706 72-218 (240)
209 1juq_A ADP-ribosylation factor 63.1 15 0.00052 35.4 7.2 73 541-613 48-127 (171)
210 3c2g_A SYS-1 protein; beta-cat 59.6 1.7E+02 0.0059 31.5 14.6 126 650-776 266-402 (619)
211 3g2s_A C-terminal fragment of 58.4 27 0.00092 32.9 7.8 73 541-613 46-125 (149)
212 1x5b_A Signal transducing adap 57.6 21 0.00073 34.0 7.1 72 749-820 53-126 (163)
213 3gjx_A Exportin-1; transport, 57.1 1.4E+02 0.0047 37.1 16.0 216 586-819 29-275 (1073)
214 1yuz_A Nigerythrin; rubrythrin 56.0 65 0.0022 31.8 10.6 28 237-284 169-196 (202)
215 3qml_C Protein SLS1, nucleotid 54.3 1.1E+02 0.0038 32.2 12.2 145 628-777 24-189 (315)
216 1mhq_A ADP-ribosylation factor 53.1 23 0.0008 33.2 6.4 72 749-820 39-117 (148)
217 3ldz_A STAM-1, signal transduc 50.0 19 0.00065 33.5 5.2 72 749-820 43-115 (140)
218 2jvx_A NF-kappa-B essential mo 50.0 4.4 0.00015 27.0 0.6 16 237-252 1-16 (28)
219 3zyq_A Hepatocyte growth facto 49.8 31 0.001 34.8 7.1 72 542-613 44-117 (226)
220 1juq_A ADP-ribosylation factor 49.2 22 0.00075 34.3 5.6 71 749-819 51-128 (171)
221 1lsh_A Lipovitellin (LV-1N, LV 48.0 92 0.0032 38.6 12.5 99 668-780 392-510 (1056)
222 3mjh_B Early endosome antigen 44.6 5 0.00017 28.1 0.2 16 238-253 4-19 (34)
223 6rxn_A Rubredoxin; electron tr 43.7 7.1 0.00024 29.2 0.9 13 235-247 26-38 (46)
224 2xqn_T Testin, TESS; metal-bin 43.2 14 0.00049 33.2 3.1 48 237-287 28-76 (126)
225 3o2t_A Symplekin; heat repeat, 43.1 3.4E+02 0.012 29.4 14.6 66 542-612 62-127 (386)
226 3a6p_A Exportin-5; exportin-5, 43.1 2.6E+02 0.0088 35.1 15.7 125 598-736 26-162 (1204)
227 1dvp_A HRS, hepatocyte growth 41.2 48 0.0017 33.0 7.0 72 542-613 41-114 (220)
228 3g2s_A C-terminal fragment of 41.0 38 0.0013 31.8 5.7 72 749-820 49-127 (149)
229 1vdy_A Hypothetical protein (R 39.4 50 0.0017 30.7 6.2 74 749-822 50-133 (140)
230 1e8j_A Rubredoxin; iron-sulfur 38.2 11 0.00037 29.0 1.2 13 235-247 32-44 (52)
231 4rxn_A Rubredoxin; electron tr 38.2 9.6 0.00033 29.6 0.9 13 235-247 32-44 (54)
232 1elk_A Target of MYB1; superhe 37.8 78 0.0027 29.8 7.5 73 541-613 51-129 (157)
233 1dvp_A HRS, hepatocyte growth 35.6 59 0.002 32.3 6.6 72 749-820 43-116 (220)
234 3zyq_A Hepatocyte growth facto 34.5 54 0.0018 32.9 6.1 72 749-820 46-119 (226)
235 1yk4_A Rubredoxin, RD; electro 33.7 13 0.00043 28.6 0.9 13 235-247 31-43 (52)
236 2kn9_A Rubredoxin; metalloprot 33.5 14 0.00047 31.2 1.2 13 235-247 56-68 (81)
237 2v3b_B Rubredoxin 2, rubredoxi 32.8 13 0.00044 28.9 0.9 13 235-247 32-44 (55)
238 3gs3_A Symplekin, LD45768P; he 32.5 4.1E+02 0.014 27.0 17.0 161 542-707 52-255 (257)
239 2nz7_A NOD1, caspase recruitme 32.0 63 0.0021 28.1 5.2 78 27-114 12-89 (98)
240 4abx_A DNA repair protein RECN 31.5 3.4E+02 0.012 25.7 18.3 72 35-112 8-81 (175)
241 2ko5_A Ring finger protein Z; 31.4 22 0.00076 30.6 2.1 49 240-290 29-77 (99)
242 2jtn_A LIM domain-binding prot 31.0 41 0.0014 32.3 4.4 48 237-287 85-132 (182)
243 1lsh_A Lipovitellin (LV-1N, LV 30.8 2.8E+02 0.0096 34.3 12.9 130 542-698 439-578 (1056)
244 1dx8_A Rubredoxin; electron tr 30.6 15 0.00051 30.1 0.9 13 235-247 36-48 (70)
245 2gqj_A Zinc finger protein KIA 30.4 81 0.0028 26.4 5.8 42 238-286 23-66 (98)
246 1m3v_A FLIN4, fusion of the LI 29.9 26 0.00087 31.5 2.5 52 237-289 30-84 (122)
247 3uk3_C Zinc finger protein 217 28.8 28 0.00096 25.6 2.2 37 239-286 4-44 (57)
248 1lko_A Rubrerythrin all-iron(I 28.6 15 0.0005 36.2 0.6 27 239-284 155-181 (191)
249 1s24_A Rubredoxin 2; electron 28.1 18 0.00061 30.9 1.0 13 235-247 64-76 (87)
250 2xjy_A Rhombotin-2; oncoprotei 27.6 35 0.0012 30.7 3.0 49 237-286 27-78 (131)
251 2cs3_A Protein C14ORF4, MY039 27.2 52 0.0018 27.4 3.5 35 238-272 14-52 (93)
252 2cup_A Skeletal muscle LIM-pro 25.8 41 0.0014 28.7 3.0 47 237-286 31-78 (101)
253 3gae_A Protein DOA1; UFD3, CDC 25.6 88 0.003 31.9 6.0 130 678-813 101-252 (253)
254 1elk_A Target of MYB1; superhe 24.8 1.1E+02 0.0037 28.8 6.0 72 749-820 54-131 (157)
255 2jne_A Hypothetical protein YF 24.7 3.8 0.00013 35.5 -3.7 41 240-286 33-73 (101)
256 3pst_A Protein DOA1; protein d 24.3 1.7E+02 0.0058 32.2 8.2 129 560-698 243-391 (425)
257 3gae_A Protein DOA1; UFD3, CDC 23.6 61 0.0021 33.1 4.3 127 560-696 71-217 (253)
258 1l8d_A DNA double-strand break 23.4 21 0.00072 31.6 0.6 13 274-286 47-59 (112)
259 1rut_X Flinc4, fusion protein 22.4 24 0.00083 34.2 0.9 50 237-287 30-82 (188)
260 1iml_A CRIP, cysteine rich int 20.8 66 0.0023 25.8 3.1 47 237-286 25-73 (76)
261 3pst_A Protein DOA1; protein d 20.6 2.6E+02 0.0089 30.8 8.7 130 678-813 273-424 (425)
262 2eps_A POZ-, at HOOK-, and zin 20.5 1.1E+02 0.0037 22.3 4.1 38 238-286 11-53 (54)
263 4gzn_C ZFP-57, zinc finger pro 20.0 43 0.0015 26.0 1.7 36 240-286 5-44 (60)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.1e-29 Score=277.62 Aligned_cols=265 Identities=22% Similarity=0.274 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHHc
Q 003347 558 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA 625 (828)
Q Consensus 558 ~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~-~k~~I~~~ 625 (828)
..+.+|++.|.+++.+ +++|..|++.|+++.|+.+|.+ .++.++++|+++|.||+.++. ++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999995 7999999999999999999953 246799999999999998765 77777654
Q ss_pred -CCHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchh-cchh
Q 003347 626 -NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHEN 700 (828)
Q Consensus 626 -g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~-~~~n 700 (828)
|+|+.|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 6699999999999999999999999999984 57899999999999999975 66789999999999999999 6788
Q ss_pred HHHHH-HhCcHHHHHHhcC-CCh----HHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003347 701 KARIV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 701 ~~~iv-~~G~V~~Ll~LL~-~~~----~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
+..++ ..|+++.|+.+|. .+. .+++.|+++|.||+. ++++++.+.+.|+++.|+++|++++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 7999999999993 222 589999999999995 8899999999999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccccc
Q 003347 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 823 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~ 823 (828)
+|+||+..+++.+..+++.|+++.|+.++.++++++++.|.++|++|......
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988888999999999999999999999999999999999999876443
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=7.3e-29 Score=284.42 Aligned_cols=278 Identities=23% Similarity=0.276 Sum_probs=243.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I 622 (828)
.++.|+++|+++++++|..|+..|++|+..++.++..+.+.|+||.|+.+|.++++.+++.|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 378999999999999999999999999998888898999999999999999999999999999999999986 7899999
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh--------cCC--------CHHHHH
Q 003347 623 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL--------GNG--------TPRGKK 685 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL--------~s~--------~~~~~~ 685 (828)
++.|+|++|+++|+ +++.+++++|+++|+||+..+++|..|++ |+++.|+.+| +++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 9999999999 322 456777
Q ss_pred HHHHHHHHchhcchhHHHHHHh-CcHHHHHHhcC-------CChHHHHHHHHHHHHHhCC--------------------
Q 003347 686 DAATALFNLSIYHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI-------------------- 737 (828)
Q Consensus 686 ~Al~aL~nLs~~~~n~~~iv~~-G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~-------------------- 737 (828)
.|+++|.||+.+++++..+++. |+++.|+.+|. .+..+++.|+++|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 99999999983 3556889999999999732
Q ss_pred -------------------------------chhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHh---
Q 003347 738 -------------------------------PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRF--- 782 (828)
Q Consensus 738 -------------------------------~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~--- 782 (828)
+++.+.+++.++++.|+.+|.+ .++.+++.|+++|+|||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 2233445566789999999975 57999999999999999876432
Q ss_pred --HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccc
Q 003347 783 --CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 783 --~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~ 822 (828)
+..+.+.|+++.|+.++.+++.++++.|.++|++|....+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2234468999999999999999999999999999987543
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=278.65 Aligned_cols=260 Identities=23% Similarity=0.285 Sum_probs=234.9
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHH-cCC
Q 003347 561 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIAN-ANA 627 (828)
Q Consensus 561 ~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~-~k~~I~~-~g~ 627 (828)
.+|++.|.+++. ++++|..|.+.|+++.|+.+|.. .++.++++|+++|.||+.++. ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 489999999988 48999999999999999999952 246789999999999998765 6767765 466
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchh-cchhHHH
Q 003347 628 IEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHENKAR 703 (828)
Q Consensus 628 l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~-~~~n~~~ 703 (828)
|++|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| .+++..+++.|+.+|+||+. +.+++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 56889999999999999975 55789999999999999999 7789998
Q ss_pred HH-HhCcHHHHHHhcC-CCh----HHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003347 704 IV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 704 iv-~~G~V~~Ll~LL~-~~~----~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
++ ..|+++.|+.+|. ... .+++.|+++|.||+. ++++++.|.+.|+++.|+++|++++..++++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88 7999999999993 222 489999999999994 8899999999999999999999999999999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003347 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
||+..+++.+..+++.|++++|+.++.++++++++.|.++|++|....
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999888889999999999999999999999999999999999998764
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=2.4e-28 Score=284.89 Aligned_cols=279 Identities=21% Similarity=0.252 Sum_probs=242.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~~k~ 620 (828)
..++.||++|+++++++|..|++.|++|+..+.++|..+++.|+||.|+.+|.++++.++++|+++|.||+.+ +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3489999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc------------------CCCH
Q 003347 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG------------------NGTP 681 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~------------------s~~~ 681 (828)
.|++.|+|++|+.+|++ ++.+++++|+++|++||.++++|..|+. ++++.|+++|. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 57999999871 1257
Q ss_pred HHHHHHHHHHHHchhcch-hHHHHHH-hCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCCc--------------
Q 003347 682 RGKKDAATALFNLSIYHE-NKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIP-------------- 738 (828)
Q Consensus 682 ~~~~~Al~aL~nLs~~~~-n~~~iv~-~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~~-------------- 738 (828)
.++++|+++|+||+.+.+ ++..+++ .|+++.|+.+|. .+...++.|+++|+||+...
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 899999999999999764 5888887 577889999882 45678999999999999752
Q ss_pred ------------hhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH----HhHHHHHhCCCHHHHHHhhcC
Q 003347 739 ------------DGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSS----RFCSMVLQEGAVPPLVALSQS 801 (828)
Q Consensus 739 ------------e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~----~~~~~v~~~g~v~~L~~LL~~ 801 (828)
.|.+.+++.++++.|+.+|. +.++.++++|+++|+|||.+.. ..+..+.++|+++.|+.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 12233344456788899996 5689999999999999998762 233455568999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccc
Q 003347 802 GTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 802 g~~r~r~kA~~lL~~L~~~~~ 822 (828)
+++++++.|.++|++|.....
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999987654
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=8.5e-27 Score=267.28 Aligned_cols=281 Identities=21% Similarity=0.262 Sum_probs=245.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.|+.|+++|+++++++|..|++.|++|+..++++|..|++.|+||.|+.+|. +.+++++++|+++|.||+.++.+|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 578999999999999999999999999999988999999999999999999999 8899999999999999999988999
Q ss_pred HHHHcCCHHHHHHhh--------cCC--------CHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCC----
Q 003347 621 AIANANAIEPLIHVL--------QTG--------SPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNG---- 679 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL--------~s~--------~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~---- 679 (828)
.+++ |++++|+.+| .++ +..+..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 9999 9999999999 333 3456669999999999998889999987 9999999888630
Q ss_pred --------------------------------------------------------------------------------
Q 003347 680 -------------------------------------------------------------------------------- 679 (828)
Q Consensus 680 -------------------------------------------------------------------------------- 679 (828)
T Consensus 202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (457)
T 1xm9_A 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281 (457)
T ss_dssp CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence
Q ss_pred ---------------CHHHHHHHHHHHHHchhcch-----h-HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003347 680 ---------------TPRGKKDAATALFNLSIYHE-----N-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 680 ---------------~~~~~~~Al~aL~nLs~~~~-----n-~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
++.+++.|+++|.||+.... . +..+.+.|+++.|+++| +.+..++..|+++|.||+.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 24556678999999987432 2 22233689999999999 67788999999999999999
Q ss_pred chhHHHHHhCCcHHHHHHHHccCC------HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHH
Q 003347 738 PDGRVAIGQENGIPVLVEVVELGS------ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKA 810 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s~s------~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA 810 (828)
++.+..|.. ++++.|+++|..++ +++...++++|.+++.++++.+..+.+.|++++|+.|+.++ +++++++|
T Consensus 362 ~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 362 PLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 888877754 78999999998753 46888999999999999888999999999999999999999 99999999
Q ss_pred HHHHHHhhcccccc
Q 003347 811 QALLSYFRNQRHGN 824 (828)
Q Consensus 811 ~~lL~~L~~~~~~~ 824 (828)
.++|.++..+++-|
T Consensus 441 ~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 441 RLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHTTSSSTTCS
T ss_pred HHHHHHHHcchhhh
Confidence 99999999877654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=2.7e-26 Score=275.84 Aligned_cols=279 Identities=16% Similarity=0.200 Sum_probs=250.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------hhH---HHHHhcCcHH
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-----------------------------DNR---MVIANCGAIN 588 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-----------------------------~nr---~~i~~~GaI~ 588 (828)
..+.++.|+++|+++++.+|..|++.|.+|+...+ .++ ..++++|+||
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 36899999999999999999999999999998542 123 6788999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH---h
Q 003347 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG---R 665 (828)
Q Consensus 589 ~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~---~ 665 (828)
.|+.+|.++++.++++|+++|.||+.+++++..+++.|++++|+.+|++++...+++|+++|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999888899999999999999999999999999999999999987554443332 2
Q ss_pred hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003347 666 SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
.|++++|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+.+| +.+..++..|+++|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999876 445667999999999996 57889999999999999998 7778899999999999999999988
Q ss_pred HHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 743 AIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 743 ~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+.+ .|+++.|+.++.+.+..+|+.|+++|.+|+.+++..++.+++ .|++++|+.++.+++.++++.|.++|.++..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8885 678999999999999999999999999999988778888888 8999999999999999999999999998875
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=3.6e-26 Score=274.84 Aligned_cols=279 Identities=18% Similarity=0.171 Sum_probs=251.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.|+.|+.+|+++++.+|.+|++.|.+|+. +.++|..++++|++|+|+.+|.+.++.++++|+++|.||+.+.+....
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4789999999999999999999999999997 567999999999999999999999999999999999999876443332
Q ss_pred H---HHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003347 622 I---ANANAIEPLIHVLQTG-SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 622 I---~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..|++.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 2 1247999999999876 455667899999999986 5788899999999999999999999999999999999999
Q ss_pred cchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHH
Q 003347 697 YHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 697 ~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+++.+..+++ .|+++.|+.++ ..+..++..|+++|+||+. ++...+.+++ .|+++.|+.++.+++.++++.|+++|
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999888886 79999999999 5678899999999999999 7888888988 89999999999999999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhccc
Q 003347 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g---~~r~r~kA~~lL~~L~~~~ 821 (828)
.|++.++++....+.+.|++++|+.+++.. ++++.+.|..+|+.+-.+.
T Consensus 733 ~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 733 LNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999998888899999999999999999765 6899999999999886543
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=3.1e-26 Score=266.13 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=250.4
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.||++|+ ++++++|..|+++|.+|+..+++++..+++.|+||.|+.+|.++++++++.|+++|.||+.+ +..+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 578999999997 55689999999999999999999999999999999999999999999999999999999987 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcchHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003347 620 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~k~~I-~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..+.+.|++++|+.+|...+ ...+.+++++|.+++........+ ...++++.|+.+|.+.+++++..|+++|.+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999998654 457889999999999876554443 345899999999999999999999999999
Q ss_pred chhcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003347 694 LSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
|+....++ ..+++.|+++.|+.+| +.+..++..++.+|+||+. .+..+..+.+.|+++.|+.+|.+.++.+++.|++
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 99866554 5567899999999999 5778899999999999988 5566788899999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+|.||+.++......+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998865
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=7.5e-26 Score=264.00 Aligned_cols=278 Identities=20% Similarity=0.229 Sum_probs=251.7
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.|+++|+ +.++++|..|+++|.+++..+++++..+++.|+||.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 578999999997 55699999999999999999999999999999999999999999999999999999999976 5689
Q ss_pred HHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcchHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003347 620 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~k~~I-~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..+.+.|++++|+.+|..++ ...+.+++++|.+++........+ ...++++.|+.+|.+++++++.+|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 457889999999999876554433 345899999999999999999999999999
Q ss_pred chhcchh-HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003347 694 LSIYHEN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n-~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
|+..... ...++..|+++.|+.+| +++..++..|+.+|.||+. .++.+..+.+.|+++.|+.++.+.++.++..|++
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 9996654 45677899999999999 6778899999999999988 5566788899999999999999999999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+|.+|+.++......+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998865
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=7.6e-26 Score=263.81 Aligned_cols=279 Identities=21% Similarity=0.261 Sum_probs=237.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.|+.||++|++++.++|..|++.|++|+.. +.+||..|++.|+||.|+.+|.+ .+.+++++|+.+|.||+.++.+|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 57899999999999999999999999999995 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhc------------------CCCHHHHHHHHHHHHHhccCcc-hHHHHHhh-CChHHHHHhhcC-
Q 003347 620 SAIANANAIEPLIHVLQ------------------TGSPEARENAAATLFSLSVIED-NKIKIGRS-GAIGPLVDLLGN- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~------------------s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~-g~I~~Lv~LL~s- 678 (828)
..|++ +++++|+++|. ..+..++++|+++|+||+...+ ++..|.+. |+++.|+.+|++
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99995 67999999871 2247899999999999998764 48777775 656677666542
Q ss_pred -------------------------------------------------------------------------CCHHHHH
Q 003347 679 -------------------------------------------------------------------------GTPRGKK 685 (828)
Q Consensus 679 -------------------------------------------------------------------------~~~~~~~ 685 (828)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 2344556
Q ss_pred HHHHHHHHchhcc-----hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003347 686 DAATALFNLSIYH-----ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 686 ~Al~aL~nLs~~~-----~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.|++||.|||... .++..+.+.|+++.|++|| ..+..++..|+++|.||+.++..+..| ..|+++.|+.+|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 6667777776532 2233344578999999999 677889999999999999998888777 67899999999987
Q ss_pred C--------CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcccc
Q 003347 760 G--------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 760 ~--------s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~~ 822 (828)
+ +..+...|+++|.||+..+++..+.+.+.|+++.|+.|+.++ .+++++.|..+|..|..+.+
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 5 578899999999999999999999999999999999999987 78999999999999987654
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=262.20 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=243.7
Q ss_pred hhhHHHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH----------HHHHHHHcCCC
Q 003347 541 IETQVRKLVEDLKS------------TSLDTQREATAELRLLAKHNMDNRMVIANCGAI----------NILVDMLHSSE 598 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s------------~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI----------~~Lv~lL~s~d 598 (828)
..+.++.||++|+. ++++.|.+|++.|.+++...++......+.|++ +.++.++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 36789999999995 337999999999999999998888888888888 66677776542
Q ss_pred --HH-----HHH-------HHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHh
Q 003347 599 --TK-----IQE-------NAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-----------GSPEARENAAATLFSL 653 (828)
Q Consensus 599 --~~-----v~e-------~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s-----------~~~e~~~~Aa~aL~nL 653 (828)
.+ +.+ +|+++|.|++.++.+|..|++.|++++|+.+|.. .+..++.+|+++|.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 444 9999999999999999999999999999999952 2367899999999999
Q ss_pred ccCcc-hHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhc--chhHHHHHHhCcHHHHHHhc-C-CChHHHHHH
Q 003347 654 SVIED-NKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-PAAGMVDKA 727 (828)
Q Consensus 654 S~~~e-~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~--~~n~~~iv~~G~V~~Ll~LL-~-~~~~v~~~A 727 (828)
+..++ +|..+... |+|+.|+.+|+++++.++..|+++|.||+.. .+++..+++.|+|+.|+++| . .+..+++.|
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 98765 67777654 7799999999999999999999999999984 57899999999999999975 3 567889999
Q ss_pred HHHHHHHhC-CchhHHHHH-hCCcHHHHHHHHccCCH----HHHHHHHHHHHHHhh---CCHHhHHHHHhCCCHHHHHHh
Q 003347 728 VAVLANLAT-IPDGRVAIG-QENGIPVLVEVVELGSA----RGKENAAAALLQLCT---NSSRFCSMVLQEGAVPPLVAL 798 (828)
Q Consensus 728 l~~LanLa~-~~e~r~~i~-~~g~I~~Lv~lL~s~s~----~~ke~Av~~L~~L~~---~~~~~~~~v~~~g~v~~L~~L 798 (828)
+.+|+||+. +++++..|. ..|+++.|+++|.++++ .++++|+++|+||+. .+++.++.+.+.|+++.|+.+
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 999999999 778888887 68999999999987654 589999999999997 688889999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 003347 799 SQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 799 L~~g~~r~r~kA~~lL~~L~~ 819 (828)
+.+++..+++.|.++|.+|..
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHS
T ss_pred HcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999974
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=4.4e-26 Score=252.36 Aligned_cols=240 Identities=21% Similarity=0.265 Sum_probs=216.5
Q ss_pred hhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHH
Q 003347 542 ETQVRKLVEDLKS-----------TSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTAL 609 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-----------~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL 609 (828)
.+.++.|+.+|.+ .++++|..|++.|++|++.+..+|..+.. .|+||.|+.+|.++++++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678889988852 24678999999999999988889988865 46799999999999999999999999
Q ss_pred HHhhcC--CccHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcc-CcchHHHHH-hhCChHHHHHhhcCCCH---
Q 003347 610 LNLSIN--DNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSV-IEDNKIKIG-RSGAIGPLVDLLGNGTP--- 681 (828)
Q Consensus 610 ~nLs~~--~~~k~~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~-~~g~I~~Lv~LL~s~~~--- 681 (828)
.||+.. +.+|..|.+.|+|++|+++ +++++.++++.|+.+|+||+. .+++|..|+ ..|+++.|+.+|.++++
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999975 4689999999999999997 467789999999999999998 668899998 57999999999998754
Q ss_pred -HHHHHHHHHHHHchh----cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHH
Q 003347 682 -RGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLV 754 (828)
Q Consensus 682 -~~~~~Al~aL~nLs~----~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv 754 (828)
.+++.|+++|.||+. +++++..+++.|+++.|+.+| +.+..+++.|+++|+||+. +++++..+.+.|+|+.|+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 589999999999996 788999999999999999999 5678899999999999995 789999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003347 755 EVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
++++++++.+++.|+++|.+|+.+.+.
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998764
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3.5e-24 Score=248.91 Aligned_cols=279 Identities=23% Similarity=0.252 Sum_probs=254.2
Q ss_pred hhHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~-~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|+++|++++ +.+|..|++.|.+++..+++++..+.+.|+|+.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999886 99999999999999998899999999999999999999999999999999999999876 4568
Q ss_pred HHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003347 620 SAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
..+.+.|++++|+.+| .+.+..++.+++++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999 567899999999999999987555445556899999999999999999999999999999866
Q ss_pred hhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHH
Q 003347 699 ENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQ 774 (828)
Q Consensus 699 ~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L~~ 774 (828)
+.+ ..+++.|+++.|+.+| +++..++..|+++|.+|+. .+..+..+.+.|+++.|+.+|.++ ++.++..|+++|.+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 554 5778899999999999 5678899999999999998 566778889999999999999998 99999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|+.+++.....+++.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888899999999999999999999999999999998764
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=3.6e-24 Score=222.52 Aligned_cols=238 Identities=29% Similarity=0.382 Sum_probs=221.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~ 621 (828)
+.++.|++.|+++++++|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3589999999999999999999999999998888999999999999999999999999999999999999987 778999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-ch
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~-~~ 699 (828)
+.+.|+++.|+.+|++++.+++..|+++|.+|+ ..++++..+.+.|+++.|+++|+++++.++..|+++|.||+.. ++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5678888999999999999999999999999999999999984 55
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
++..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 667889999999999999 5678899999999999998 66678888999999999999999999999999999999998
Q ss_pred CCH
Q 003347 778 NSS 780 (828)
Q Consensus 778 ~~~ 780 (828)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=6.1e-24 Score=220.78 Aligned_cols=240 Identities=25% Similarity=0.340 Sum_probs=223.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHH
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~-~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~ 662 (828)
|+|+.|+.+|.+++++++..|+++|.+++... .++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 78999999999999999999999999998765 4889999999999999999999999999999999999987 788999
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cch
Q 003347 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPD 739 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e 739 (828)
+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++..+++.|+++.|+++| +++..++..|+++|.+|+. .++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 778899999999999999999 5678899999999999998 445
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56888899999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred ccccc
Q 003347 820 QRHGN 824 (828)
Q Consensus 820 ~~~~~ 824 (828)
...+.
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 76544
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1e-23 Score=245.86 Aligned_cols=278 Identities=19% Similarity=0.228 Sum_probs=248.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~ 616 (828)
.+.|+.|+.+|.+++.+++..|++.|.+|+.+++++|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999997653 457889999999999875
Q ss_pred cc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 617 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. .......++++.|+.+|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43 33344568999999999999999999999999999986654 45566779999999999999999999999999999
Q ss_pred hh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003347 695 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 695 s~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
+. ++..+..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 87 456778889999999999999 6778899999999999998 56667888999999999999999999999999999
Q ss_pred HHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 772 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 772 L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
|.|++.+ +.+.+..+++.|++++|+.++.+.+++++..+...|.++..
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999875 56777889999999999999999999999999998887754
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=1.1e-23 Score=244.76 Aligned_cols=278 Identities=19% Similarity=0.236 Sum_probs=247.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~ 616 (828)
.+.|+.|+++|++++.+++..|++.|.+|+.+++.+|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999999999999999999998754 457889999999999875
Q ss_pred cc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 617 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. .......++++.|+.+|.+++.+++..|+++|.+|+.....+ ..+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 44 333445689999999999999999999999999999876554 5566779999999999999999999999999999
Q ss_pred hh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003347 695 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 695 s~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
+. ++.++..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 87 456777889999999999999 5778899999999999998 56678888999999999999999999999999999
Q ss_pred HHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 772 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 772 L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
|.|++.+ +.+.+..+++.|++++|+.++.+.+++++..+.+.|.++-.
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999985 46677889999999999999999999999999998887654
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=1.7e-23 Score=243.25 Aligned_cols=277 Identities=19% Similarity=0.180 Sum_probs=250.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhcC-CccH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~GaI~~Lv~lL~s~d-~~v~e~A~~aL~nLs~~-~~~k 619 (828)
..++.|++.|.++++++|..|+..|+.++.... .+...+.+.|+||.|+.+|.+++ +.++..|+++|.+++.+ +.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999966544 67888899999999999999876 99999999999999876 6788
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHchhc
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~~ 697 (828)
..+++.|+++.|+.+|.+++..+++.|+++|.+|+.. +.++..+...|+++.|+.+| .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999975 55688888889999999999 566899999999999999997
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003347 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
..........|+++.|+.+| +.+..++..|+++|.+|+.....+ ..+.+.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 65555566799999999999 677889999999999999966554 6778899999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003347 776 CTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
+.+.+.....+++.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988888999999999999999999 89999999999999975
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.3e-23 Score=242.42 Aligned_cols=279 Identities=20% Similarity=0.211 Sum_probs=253.9
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ ++.+|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999987 899999999999999998888999999999999999999999999999999999999876 4678
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~- 697 (828)
..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999999999999999999999765 4444555679999999999999999999999999999985
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003347 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
++....+++.|+++.|+.+| +.+..++..|+.+|.+|+. .+.....+.+.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45677788899999999999 6778899999999999998 456677788899999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+.+++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 998888888888999999999999999999999999999988653
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=3.3e-24 Score=224.06 Aligned_cols=234 Identities=22% Similarity=0.323 Sum_probs=215.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I 622 (828)
..+.+++.|+++++++|..|++.|+.+...+..++..+.+.|+|+.|+.+|.++++.++..|+++|.|++. ++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47899999999999999999999977655577889999999999999999999999999999999999997 57789999
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchh
Q 003347 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 700 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n 700 (828)
.+.|+++.|+.+|++++..++..|+++|.+|+..++.+ ..+.+.|+++.|+.+|++++..++..|+++|.||+. .+++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999998888 888888999999999999999999999999999998 4567
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 701 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77888999999999999 6678899999999999996 66778889999999999999999999999999999999985
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=1e-22 Score=230.27 Aligned_cols=276 Identities=21% Similarity=0.215 Sum_probs=248.9
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHH
Q 003347 543 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~-~~k~ 620 (828)
+.++.|++.|+++ ++.+|..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.+++.|+++|.+++.+. ..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 8999999999999999988888888889999999999999999999999999999998764 5788
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003347 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
.+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... ..+..+. .++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999999753 2333332 68999999999999999999999999999985
Q ss_pred -chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003347 698 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 -~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
++++..++..|+++.|+.+| +++..++..|+++|.+|+... +.+..+.+.|+++.|+.++.+.++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777788999999999999 677889999999999999854 456677888999999999999999999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
++.+++...+.+++.|+++.|+.++.++++++|+.|.++|.+|..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888888899999999999999999999999999998865
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=2.7e-23 Score=217.22 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=218.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHH
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~ 662 (828)
..++.++.+|.+++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++.+++..|+++|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5689999999999999999999999775 4556678889999999999999999999999999999999998 6788999
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cch
Q 003347 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPD 739 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e 739 (828)
+.+.|+++.|+.+|+++++.++..|+++|.||+.+.+++ ..+++.|+++.|+.+| +++..++..|+++|.+|+. .++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 8899999999999999 6678899999999999998 556
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999999999999998888999999999999999999999999999999998864
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.3e-22 Score=236.08 Aligned_cols=278 Identities=21% Similarity=0.227 Sum_probs=250.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC-Ccc
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSIN-DNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~-~~~ 618 (828)
...++.|++.|+++++++|..|+..|+.+... ...++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.+ +..
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34689999999999999999999999998654 345677888999999999999987 899999999999999875 456
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003347 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
+..+++.|+++.|+.+|++++..+++.|+++|.+|+.. ++++..+...|+++.|+.+|.+.+..++..|+++|.||+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999986 56788888889999999999999999999999999999986
Q ss_pred c-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003347 698 H-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
. .........|+++.|+.+| +.+..++..|+++|.+|+.. ++....+.+.|+++.|+.++.+.++.+++.|+++|.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 5 5555667799999999999 56788999999999999985 5667888889999999999999999999999999999
Q ss_pred HhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 775 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
++.+++.....+++.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999988888888999999999999999999999999999999875
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.7e-22 Score=226.75 Aligned_cols=278 Identities=20% Similarity=0.207 Sum_probs=248.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCC--cc
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIND--NN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~--~~ 618 (828)
.+.++.|++.|+++++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999999888899999999999999999996 68999999999999998653 33
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003347 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
+..++ .++++.|+.+|.+++..++..++++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 32333 789999999999999999999999999999854 5666777789999999999999999999999999999986
Q ss_pred ch-hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003347 698 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~~-n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.+ ....+++.|+++.|+.+| +++..++..|+++|.+|+. +++....+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 455678899999999999 5678899999999999997 66777888889999999999999999999999999999
Q ss_pred HhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 775 LCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 775 L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
++.+ +++....+++.|+++.|+.++..+++++++.|.++|..|...
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9986 566777788899999999999999999999999999887653
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=7.4e-22 Score=228.11 Aligned_cols=278 Identities=21% Similarity=0.219 Sum_probs=240.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|+++++.+|..|+..|.+|+..+ .++..+... |+++.|+.+|.+ ++++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 467999999999999999999999999999854 577666654 999999999975 48999999999999999988899
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 5667788888999999999999999999999999999988 5
Q ss_pred chhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHH---------------------
Q 003347 698 HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV--------------------- 754 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv--------------------- 754 (828)
++++..+++.|+++.|+.+| .........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 78888888999999999988 3445566778888999998888888887777665554
Q ss_pred ------------------HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 003347 755 ------------------EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 814 (828)
Q Consensus 755 ------------------~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL 814 (828)
+++.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. .+.+++.|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556778888899999999888888889999999999999999863 378999999999
Q ss_pred HHhhcc
Q 003347 815 SYFRNQ 820 (828)
Q Consensus 815 ~~L~~~ 820 (828)
.+|...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.4e-21 Score=225.70 Aligned_cols=279 Identities=24% Similarity=0.253 Sum_probs=243.4
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ +++++..|+..|++|+.. ++++..+.+.|+||.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46899999999754 899999999999999985 56999999999999999999999999999999999999876 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+.+.|+++.|+.+|++++ ...+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999997 5788999999999999999998774 55666788899999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-C---------------------------------------CChHHHHHHHHHHHHHhCC
Q 003347 698 HENKARIVQAGAVKHLVDLM-D---------------------------------------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~---------------------------------------~~~~v~~~Al~~LanLa~~ 737 (828)
++++..+++.|+++.|+.++ + .+..++..|+++|.+|+.+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999888877666 2 2455667788888888874
Q ss_pred -chhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHH---hHHHHHhCCCHHHHHHhhcCCC-HHHHHHH
Q 003347 738 -PDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGT-PRAKEKA 810 (828)
Q Consensus 738 -~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~---~~~~v~~~g~v~~L~~LL~~g~-~r~r~kA 810 (828)
++.+..+.+.|+++.|++++.+ .++.+++.|+.+|.+|+.+++. .+..+.+.|+++.|+.++.++. +.+++.|
T Consensus 297 ~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 4688899999999999999975 3489999999999999987543 4678889999999999999987 5899999
Q ss_pred HHHHHHhhccc
Q 003347 811 QALLSYFRNQR 821 (828)
Q Consensus 811 ~~lL~~L~~~~ 821 (828)
.++|+++....
T Consensus 377 ~~~l~nl~~~~ 387 (529)
T 1jdh_A 377 VGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHTTSG
T ss_pred HHHHHHHhcCh
Confidence 99999987643
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.4e-21 Score=233.23 Aligned_cols=277 Identities=21% Similarity=0.212 Sum_probs=245.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|++.++.+|..|+..|.+|+... .++..+... |+++.|+.+|.+. +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467999999999999999999999999999966 477766654 9999999999875 8999999999999999988899
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|++++..++..|+.+|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999986 4667778888999999999999999999999999999997 7
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH-------------------
Q 003347 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------------- 756 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l------------------- 756 (828)
.+++..+++.|+++.|+.+|. ....++..++.+|.+|+.+++.+..+++.|+++.|+.+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999993 33567788999999999999999999888877766554
Q ss_pred --------------------HccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-C-HHHHHHHHHHH
Q 003347 757 --------------------VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-T-PRAKEKAQALL 814 (828)
Q Consensus 757 --------------------L~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~-~r~r~kA~~lL 814 (828)
+.+.++.+++.|+++|.+|+.+++..+..+.+.|+++.|+.++.+. + +.++..|..+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 4456778888888888888888877888899999999999999874 3 78999999999
Q ss_pred HHhhc
Q 003347 815 SYFRN 819 (828)
Q Consensus 815 ~~L~~ 819 (828)
.+|..
T Consensus 332 ~nL~~ 336 (644)
T 2z6h_A 332 RHLTS 336 (644)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 99965
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=206.64 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=175.3
Q ss_pred hHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 543 TQVRKLVEDLKSTSL--DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~--~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
..++.|+++|+++++ ++|..|+..|++|++.++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+.+ +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458999999999988 8899999999999999999999999999999999999999999999999999999974 7899
Q ss_pred HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc----------------CCCHH
Q 003347 620 SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------------NGTPR 682 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----------------s~~~~ 682 (828)
..|++.|+|++|+++|+ +++.+++++|+++||+||..+++|..|++. ++++|++++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 578999999999999999999999999875 6999999763 12569
Q ss_pred HHHHHHHHHHHchh-cchhHHHHHH-hCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCC
Q 003347 683 GKKDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 683 ~~~~Al~aL~nLs~-~~~n~~~iv~-~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~ 737 (828)
++.+|..+|+||+. +.++|..|.+ .|+|+.|+.+++ .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998 5589999987 478999999982 2457899999999999974
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=6.3e-21 Score=227.53 Aligned_cols=279 Identities=24% Similarity=0.251 Sum_probs=243.6
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ ++++|..|+..|+.|+.. .+++..+.+.|+|+.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47799999999865 899999999999999995 56999999999999999999999999999999999999876 5667
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++...+..++.+|.+|+. +++++..+.+.|+++.|+.+|++.+ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999888899999999996 7888999999999999999999874 67788999999999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-C---------------------------------------CChHHHHHHHHHHHHHhCC
Q 003347 698 HENKARIVQAGAVKHLVDLM-D---------------------------------------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~---------------------------------------~~~~v~~~Al~~LanLa~~ 737 (828)
.+++..+++.|+++.|+.++ + .+..+++.|+++|.+|+..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999888887765 2 3455667788888888874
Q ss_pred -chhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH---HhHHHHHhCCCHHHHHHhhcCCC-HHHHHHH
Q 003347 738 -PDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS---RFCSMVLQEGAVPPLVALSQSGT-PRAKEKA 810 (828)
Q Consensus 738 -~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~---~~~~~v~~~g~v~~L~~LL~~g~-~r~r~kA 810 (828)
++.+..+.+.|+++.|+.++.+. .+.+++.|+.+|.+|+...+ ..+..+...|+++.|+.++.+.+ +.+++.|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 46788889999999999999863 37999999999999998644 23455788999999999999885 6899999
Q ss_pred HHHHHHhhccc
Q 003347 811 QALLSYFRNQR 821 (828)
Q Consensus 811 ~~lL~~L~~~~ 821 (828)
.++|.+|....
T Consensus 374 ~~~L~nLa~~~ 384 (644)
T 2z6h_A 374 VGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHTTSG
T ss_pred HHHHHHHccCH
Confidence 99999987643
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.7e-21 Score=224.34 Aligned_cols=279 Identities=16% Similarity=0.161 Sum_probs=237.3
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh-------------------------------------h-hHHHHH
Q 003347 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNM-------------------------------------D-NRMVIA 582 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~-------------------------------------~-nr~~i~ 582 (828)
.++++.|++.++. .+..+...++..|.+|+...+ + ++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 5678889999984 666778888888888887332 1 567788
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHH---HHHHHHHHHHHhccCcch
Q 003347 583 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE---ARENAAATLFSLSVIEDN 659 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e---~~~~Aa~aL~nLS~~~e~ 659 (828)
++|+||.|+.++.+.++.+++.|+++|.||+.++.+|..+++.|++++|+.+|.+++.. .+.+|+.+|.+|+...+.
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 89999999999999999999999999999999999999999999999999999998655 899999999999977666
Q ss_pred HHHHHh---hCChHHHHHhhcCC--CH------------HHHHHHHHHHHHchhcc-----hhHHHHHHh-CcHHHHHHh
Q 003347 660 KIKIGR---SGAIGPLVDLLGNG--TP------------RGKKDAATALFNLSIYH-----ENKARIVQA-GAVKHLVDL 716 (828)
Q Consensus 660 k~~I~~---~g~I~~Lv~LL~s~--~~------------~~~~~Al~aL~nLs~~~-----~n~~~iv~~-G~V~~Ll~L 716 (828)
...+.. .|+|++|+.||..+ .. .-+..|+.||.||+..+ +.+.++++. |+++.|..+
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 665532 39999999999832 11 23779999999999976 347888985 999999999
Q ss_pred c-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCC------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003347 717 M-DPAAGMVDKAVAVLANLATIPDGR-VAIGQEN------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 717 L-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g------~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
| +++..++..|+++++||+.+++++ +.+.+.+ .++.|+.++.+++..+|..|+++|.+++..++..+..+++
T Consensus 615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8 667788999999999999999986 4554322 3889999999999999999999999999888878888888
Q ss_pred C-CCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcc
Q 003347 789 E-GAVPPLVALSQS--GTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 789 ~-g~v~~L~~LL~~--g~~r~r~kA~~lL~~L~~~ 820 (828)
. ++++.|+.+++. +++.++..+..++.+|...
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 6 899999999999 8899999999999999874
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=200.59 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=173.0
Q ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHH
Q 003347 586 AINILVDMLHSSET--KIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKI 661 (828)
Q Consensus 586 aI~~Lv~lL~s~d~--~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~ 661 (828)
.+|.|+.+|.++++ +++..|+++|.+|+. ++.++..|.+.|+|++|+.+|++++.++++.|+++|.||+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 899999999999985 56789999999999999999999999999999999999998 578999
Q ss_pred HHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC-----------------CChHH
Q 003347 662 KIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-----------------PAAGM 723 (828)
Q Consensus 662 ~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-----------------~~~~v 723 (828)
.|++.|+|+.|+++|+ +++..+++.|+.+|+||+..+++|..+++. +++.|+.++. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 578999999999999999999999999875 6999998651 14578
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHhC-CcHHHHHHHHcc------CCHHHHHHHHHHHHHHhhC
Q 003347 724 VDKAVAVLANLAT-IPDGRVAIGQE-NGIPVLVEVVEL------GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 724 ~~~Al~~LanLa~-~~e~r~~i~~~-g~I~~Lv~lL~s------~s~~~ke~Av~~L~~L~~~ 778 (828)
.+.|.++|+||+. ++++|..|.+. |+|+.|+.+++. .+.+.+|+|+.+|+|||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999998 67999999986 558999999975 2678999999999999975
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=1.8e-20 Score=228.49 Aligned_cols=275 Identities=25% Similarity=0.294 Sum_probs=244.7
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003347 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.++.|++.|+++ +++++..|+..|++|+.. ..++..+.+.|+|+.|+.+|.+.++.++..|+++|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 46899999999854 899999999999999985 57899999999999999999999999999999999999876 5667
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCC-HHHHHHHHHHHHHchhc
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~ 697 (828)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..++..|+++.|+.+|++++ ...+..|+.+|.+|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 778889999999999999999999999999999987 5788999999999999999999875 45666889999999999
Q ss_pred chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003347 698 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
..++..+++.|+++.|+.++ +.+..++..|+++|.+|+...... ....++++.|+++|.+.++.+++.|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 567789999999999999855321 122457999999999999999999999999999
Q ss_pred hCCHHhHHHHHhCCCHHHHHHhhcC-CC-HHHHHHHHHHHHHhhc
Q 003347 777 TNSSRFCSMVLQEGAVPPLVALSQS-GT-PRAKEKAQALLSYFRN 819 (828)
Q Consensus 777 ~~~~~~~~~v~~~g~v~~L~~LL~~-g~-~r~r~kA~~lL~~L~~ 819 (828)
.+++..+..+.+.|+++.|+.++.. ++ ..+++.|..+|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9998888999999999999999987 33 4899999999999865
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=2.8e-20 Score=188.98 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=178.6
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchH
Q 003347 583 NCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNK 660 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k 660 (828)
..|+.+.|+.+|.++++.++..|+++|.+|+. ++.++..+.+.|+++.|+.+|++++..++..|+++|.+|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35899999999999999999999999999995 46778899999999999999999999999999999999995 66788
Q ss_pred HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-
Q 003347 661 IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI- 737 (828)
Q Consensus 661 ~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~- 737 (828)
..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++.+..+++.|+++.|+.+| +++..++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999997 456667889999999999999 56788999999999999996
Q ss_pred chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 738 PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7888889999999999999999999999999999999985
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=2.3e-20 Score=227.51 Aligned_cols=275 Identities=21% Similarity=0.214 Sum_probs=245.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+.++.|+++|.+.++.+|..|+..|.+|+... .++..+... |+|+.|+.+|.+. ++.++..|+.+|.+|+.++.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 678999999999999999999999999999954 567777754 8999999999765 8999999999999999988889
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-c
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~ 697 (828)
..+.+.|+++.|+.+|++++..++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|++++..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999986 5667777788999999999999999999999999999997 6
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003347 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.+++..+++.|+++.|+.+|. ......+.++.+|.+|+.+++.+..+++.|+++.|+.++.+.+..+++.|+++|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 789999999999999999993 334566788999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 776 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+...... ....++++.|+.++.+.++.+++.|.++|..|...
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9876431 11246899999999999999999999999999764
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=7.8e-20 Score=185.62 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=180.3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhH
Q 003347 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENK 701 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~ 701 (828)
..|+.+.|+.+|++++.+++..|+++|.+|+. .++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34788999999999999999999999999995 66778889999999999999999999999999999999996 67888
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
..+++.|+++.|+.+| +++..++..|+++|.||+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 5778899999999999997 5566778899999999999999999999999999999999998
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+..+..+.+.|+++.|+.++.++++.+++.|.++|+.|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998864
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.84 E-value=1.6e-21 Score=192.93 Aligned_cols=96 Identities=29% Similarity=0.467 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 206 EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+.++++..++....+. .....+|++|.||||+++|+|||+++|||||||.||++||..++.+||+||++++
T Consensus 82 ~~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 82 KYLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3456666665554331 1245789999999999999999999999999999999999876558999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCC
Q 003347 286 HTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 286 ~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
..+|+||+.|+++|+.|+..||+.+
T Consensus 153 ~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 153 QDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred hhhCcchHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999864
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.84 E-value=1.2e-21 Score=171.73 Aligned_cols=74 Identities=31% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003347 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999996 4789999999999999999999999999999875
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.83 E-value=2.8e-21 Score=173.80 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCCCCCcccccCccccccCCeecCCC-cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 003347 233 PVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
...+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+||++++..+|+||+.|+++|+.|+.++++.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 45689999999999999999999999 99999999999986 478999999999999999999999999999999865
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.83 E-value=1.4e-21 Score=176.48 Aligned_cols=75 Identities=32% Similarity=0.406 Sum_probs=70.4
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003347 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
....+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 5789999999999999999999999999999886
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-18 Score=205.35 Aligned_cols=277 Identities=14% Similarity=0.158 Sum_probs=229.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc-
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~- 617 (828)
+...++.+.+.|..++.+.+..|+..|..|+. +++.|..+++. |+++.|+.++.. .+..+..-++.+|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 45678889999998887779999999999998 45788888775 889999999985 788899999999999976321
Q ss_pred --------------------------------------cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch
Q 003347 618 --------------------------------------NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 659 (828)
Q Consensus 618 --------------------------------------~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~ 659 (828)
++..+.+.|++++|+.++++++..+++.|+++|.+|+.+.++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 344566789999999999999999999999999999999999
Q ss_pred HHHHHhhCChHHHHHhhcCCCHH---HHHHHHHHHHHchhcchhHHHHHH---hCcHHHHHHhcC--CChH---------
Q 003347 660 KIKIGRSGAIGPLVDLLGNGTPR---GKKDAATALFNLSIYHENKARIVQ---AGAVKHLVDLMD--PAAG--------- 722 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s~~~~---~~~~Al~aL~nLs~~~~n~~~iv~---~G~V~~Ll~LL~--~~~~--------- 722 (828)
|..+++.|+++.|+.+|.+++.. ++..|+.||.+|+...+....+-. .|+|++|+.||. +...
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999988644 899999999999875544433311 499999999995 2211
Q ss_pred ---H-HHHHHHHHHHHhCCc-----hhHHHHHhC-CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC---
Q 003347 723 ---M-VDKAVAVLANLATIP-----DGRVAIGQE-NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE--- 789 (828)
Q Consensus 723 ---v-~~~Al~~LanLa~~~-----e~r~~i~~~-g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~--- 789 (828)
+ ...|+.+|.|||..+ +.|..|+.. |+++.|.++|.+.+..+|..|+++|.||+.+.....+.+...
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 2 568999999999976 347888885 899999999999999999999999999998543211233322
Q ss_pred ---CCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003347 790 ---GAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 790 ---g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.++.|+.|+..++.++|+.|.++|.++.
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 23789999999999999999999999995
No 41
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.79 E-value=1.6e-19 Score=215.40 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Q 003347 142 YEQTSSLIKEAIRDQVDGVAPSSEILVKVAES----LSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTR 217 (828)
Q Consensus 142 ~e~~~~~~~~~l~~~~~~~~~~~~~l~~i~~~----l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (828)
.+.|...|. .|||+|+++.|.+.+.. .|+.+...+. ++..|.+.++++....+..+.
T Consensus 823 ~~~F~~aVa------~DgRSy~~elF~~a~~il~~~~~l~~~~~i~-~~~~l~~~~~~~~~~~~~~e~------------ 883 (968)
T 3m62_A 823 QSEFISAVA------KDERSFNRNLFVRAVDILGRKTGLASPEFIE-KLLNFANKAEEQRKADEEEDL------------ 883 (968)
T ss_dssp CHHHHHHHH------HCTTTCCHHHHHHHHHHHTTSTTSSCHHHHH-HHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChHHHHHHH------hcCCCCCHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHhhhc------------
Confidence 456666554 69999999999965543 3677776653 344444444332221111111
Q ss_pred HHHHHHHhhhhccCCCCCCCCcccccCccccccCCeecCCC-cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHH
Q 003347 218 MHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296 (828)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~ 296 (828)
...++|++|+|||++++|+|||++|+| +||||.+|++|+.. +.+||+||++|+..+++||++||
T Consensus 884 --------------~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk 948 (968)
T 3m62_A 884 --------------EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELR 948 (968)
T ss_dssp --------------HHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHH
T ss_pred --------------cccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHH
Confidence 113699999999999999999999998 79999999999987 47899999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 003347 297 ALIANWCELNNV 308 (828)
Q Consensus 297 ~~i~~~~~~~~~ 308 (828)
+.|++||.+++.
T Consensus 949 ~~I~~w~~~~~~ 960 (968)
T 3m62_A 949 QKILCFKKQKKE 960 (968)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.77 E-value=1.9e-19 Score=155.07 Aligned_cols=76 Identities=57% Similarity=1.055 Sum_probs=72.1
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 003347 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
..+|++|.||||+++|+|||+++|||+||+.||.+|+..++.+||.||+++...+++||..|+++|+.|+++|++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999987788999999999999999999999999999999873
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=1.6e-17 Score=179.25 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhh
Q 003347 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL 676 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~-lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL 676 (828)
.+-+..|+..|.+++.+.++...+...|++++|+. +|++++..++..|+++|.+++.+ +..+..+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45677889999999888788888999999999999 99999999999999999999875 56788899999999999999
Q ss_pred cCC-CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHH
Q 003347 677 GNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPV 752 (828)
Q Consensus 677 ~s~-~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~ 752 (828)
+++ +..+++.|+++|.||+.+ +.....+++.|+++.|+.+| +.+..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 789999999999999985 55677888999999999999 6788999999999999988 6788999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC-CCH-H---HHHHhhc-CC-CHHHHHHHHHHHHHhhccc
Q 003347 753 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE-GAV-P---PLVALSQ-SG-TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 753 Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~-g~v-~---~L~~LL~-~g-~~r~r~kA~~lL~~L~~~~ 821 (828)
|+.+|.+.++.+++.|+.+|.+|+...+......... ..+ . .-.+-++ .. +....++|..++..+....
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999866444433221 112 1 1223344 23 4678899999999877543
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.76 E-value=3.5e-18 Score=182.61 Aligned_cols=80 Identities=33% Similarity=0.466 Sum_probs=74.9
Q ss_pred CCCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 003347 231 CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 231 ~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
.....+|++|.||||+++|+|||+++|||||||.||++||..++.+||+|+++++..+++||..|+++|+.|+.+||+.+
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999999876779999999999999999999999999999999864
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=2.7e-17 Score=177.45 Aligned_cols=182 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHH-hhcCCCHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHh
Q 003347 639 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDL 716 (828)
Q Consensus 639 ~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~L 716 (828)
+.+.+..|+..|.+++...+++..+...|+++.|+. +|.++++.++..|+++|.|++.+ +.++..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999998889999999999999999 99999999999999999999985 5678889999999999999
Q ss_pred cC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHH
Q 003347 717 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 793 (828)
Q Consensus 717 L~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~ 793 (828)
|. ++..++..|+++|.||+. ++.+.+.+.+.|+++.|+.+|.+++..++..|+++|.+|+.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 93 467899999999999997 567788899999999999999999999999999999999999888999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 794 PLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+|+.++.++++.+++.|..+|.+|...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999888654
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=155.18 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=65.8
Q ss_pred CCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-----CCCCCCCCCc---CCCCCCCCcHHHHHHHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-----LFVCPKTRQT---LAHTTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-----~~~cP~t~~~---l~~~~l~pN~~l~~~i~~~~~~ 305 (828)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+||.+ +...+|+||..|+++|+.|++.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999863 3589995554 8899999999999999999988
Q ss_pred cCC
Q 003347 306 NNV 308 (828)
Q Consensus 306 ~~~ 308 (828)
++-
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 763
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=133.91 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=69.1
Q ss_pred CCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcC-CCCCCCCcHHHHHHHHHHHHHcCCC
Q 003347 233 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTL-AHTTLIPNYTVKALIANWCELNNVK 309 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l-~~~~l~pN~~l~~~i~~~~~~~~~~ 309 (828)
...++++|.||||+++|.|||+++ |||+||+.||.+|+... ..+||.|++++ ....+.||..|+++|+.|...+++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 346889999999999999999999 99999999999999754 46899999997 5678999999999999999988653
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.58 E-value=2.6e-16 Score=128.52 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=50.1
Q ss_pred cccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003347 239 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
.|.||||+++|+|||++ +|||+|||.+|++|+..+ .+||+||++|+.++|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 999999999999999875 5699999999999999985
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8e-15 Score=151.47 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCCcHHHHHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l~~~i~~~~~~ 305 (828)
...+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 56789999999999999985 999999999999999864 457999 99999999999999999999999764
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=134.57 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~~~~ 305 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 457899999999999999999999999999999999766689999999988 7899999999999988643
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=6.5e-12 Score=145.41 Aligned_cols=272 Identities=20% Similarity=0.222 Sum_probs=216.1
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcC-Cc
Q 003347 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
.+.|+.|+..+++ .-.+.++.|+..|+.+++. .|..++ .++++.|+..|+. +|.++...++.+|.++... +.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5789999999984 4688899999999999884 444444 5789999999976 4889999999999887432 21
Q ss_pred c-----------------HHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-c-hHHHHHhh-CChHHHHHhh
Q 003347 618 N-----------------KSAI-ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D-NKIKIGRS-GAIGPLVDLL 676 (828)
Q Consensus 618 ~-----------------k~~I-~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e-~k~~I~~~-g~I~~Lv~LL 676 (828)
. ...+ .+.+.|+.|+.+|++.+-.+|.+++.+|..|+... + ++..|... ++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 1122 34589999999999999999999999999998743 3 67888865 9999999999
Q ss_pred cCCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHhC-CchhHHHHHhCCc
Q 003347 677 GNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENG 749 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~-----~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~ 749 (828)
.+....++..|+.+|.+|+..+.+.++++. +|+++.|+.++. ....+++.|+.+|.||.. ++.++..|.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999998877777776 699999999992 234688999999999999 5568888999999
Q ss_pred HHHHHHHHccCCH---------HHHHHHHHHHHHHhhCC------HHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHH
Q 003347 750 IPVLVEVVELGSA---------RGKENAAAALLQLCTNS------SRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQA 812 (828)
Q Consensus 750 I~~Lv~lL~s~s~---------~~ke~Av~~L~~L~~~~------~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~ 812 (828)
++.|..++..+.+ .....+..++.-|+..+ ..++..+.+.|+++.|++++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999975422 12223666677777652 34677888999999999998876 3567777776
Q ss_pred HHHHh
Q 003347 813 LLSYF 817 (828)
Q Consensus 813 lL~~L 817 (828)
++.-+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.43 E-value=5.8e-14 Score=136.09 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC-CCCCcHHHHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVKALIANWCE 304 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pN~~l~~~i~~~~~ 304 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999998766899999999988 89999999999998863
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.9e-13 Score=123.00 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003347 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.|++++...++.||..++++|+.|.+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45678999999999999998 899999999999999864 68999999999999999999999999998765
No 54
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.33 E-value=1.6e-10 Score=133.90 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=214.7
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChh-----------------hH-HHHHhcCcHHHHHHHHcCCCHHH
Q 003347 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMD-----------------NR-MVIANCGAINILVDMLHSSETKI 601 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~-----------------nr-~~i~~~GaI~~Lv~lL~s~d~~v 601 (828)
...++.|+.-|+.+ +.+.-..++..|..+...+++ +. ..+.+.+.|+.|+.+|++.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 45678889988854 677777888888776554332 11 23345689999999999999999
Q ss_pred HHHHHHHHHHhhcCC-c-cHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhc
Q 003347 602 QENAVTALLNLSIND-N-NKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 602 ~e~A~~aL~nLs~~~-~-~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~ 677 (828)
+.+++..|..|+.+. . .+..|... ++++.|+.+|++....+|-.++..|.+|+.... .++.+...|+++.|+++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 999999999997653 3 68888855 999999999999999999999999999998655 4666666799999999998
Q ss_pred CCC----HHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhcCCCh--------HH--HHHHHHHHHHHhCCc----
Q 003347 678 NGT----PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMDPAA--------GM--VDKAVAVLANLATIP---- 738 (828)
Q Consensus 678 s~~----~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL~~~~--------~v--~~~Al~~LanLa~~~---- 738 (828)
... ..+..+|+.+|.||..+ ..|+..+.+.|+++.|..+|+.+. .+ +..++.++..|+...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 653 37889999999999994 569999999999999999984211 11 223777888887731
Q ss_pred ---hhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHHhHHHHHhCC---------CHHHHHHhhcCC-C
Q 003347 739 ---DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQEG---------AVPPLVALSQSG-T 803 (828)
Q Consensus 739 ---e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g---------~v~~L~~LL~~g-~ 803 (828)
.++.++.+.|+++.|++++.+. ...++..|..++..++++++..+..+.+.. ++..|+.++.+. .
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 3467889999999999998764 788999999999999999998888877643 233344445444 3
Q ss_pred HHHHHHHHHHHHHhh
Q 003347 804 PRAKEKAQALLSYFR 818 (828)
Q Consensus 804 ~r~r~kA~~lL~~L~ 818 (828)
..+|-.|..+++.+-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677877777877654
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=6.5e-13 Score=119.77 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCCcccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003347 236 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.+++.||||+++|.+||+ ++|||+||+.||.+|+.....+||.||.++...++++|+.+..+++...+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 3478899999999999999 9999999999999999987678999999999999999999999888876654
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=8e-13 Score=120.85 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC----CCCCcHHHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANWC 303 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~i~~~~ 303 (828)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|+.++... .+.+|..|+++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56889999999999999997 999999999999999875 7799999999876 7889999999999873
No 57
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=7.5e-14 Score=119.98 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=57.2
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC------CCCCCCCCCcCCCCCCCCcHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG------LFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
.+.+++.||||++.|.+||+++|||+||+.||.+|+... ..+||.||+++...++.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 467899999999999999999999999999999999863 5679999999999899999776544
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.9e-13 Score=116.86 Aligned_cols=65 Identities=28% Similarity=0.457 Sum_probs=57.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC-----CCCCCCCCCcCCCCCCCCcHHHHHH
Q 003347 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
..+.+++.||||++.|.+||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 3467899999999999999999999999999999999872 5679999999999999999776544
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.29 E-value=1e-12 Score=122.12 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=62.7
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
.++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.||.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57789999999999999999999999999999999998766899999999999999999999888754
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=6.8e-13 Score=123.17 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHc
Q 003347 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.++|.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.||+.|+++++.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 34689999999999999999 9999999999999997 57999999999899999999999999997654
No 61
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=9.3e-12 Score=118.93 Aligned_cols=64 Identities=14% Similarity=0.375 Sum_probs=52.8
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHH
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 303 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~ 303 (828)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||.||+++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 3578899999999999999999999999999999864 6799999998654 24555666666554
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=1.4e-12 Score=128.45 Aligned_cols=69 Identities=22% Similarity=0.430 Sum_probs=61.9
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCE 304 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~~~ 304 (828)
+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.|+.++.. ..+.||..|+++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999997 9999999999999999877889999999854 579999999999999854
No 63
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.6e-12 Score=112.40 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 299 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i 299 (828)
...+++.||||++.|.+||+++|||+||+.||.+|+... .+||.|++++. ..+.||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc-ccCCcHHHHHHHH
Confidence 356789999999999999999999999999999999864 67999999997 6788996655444
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=8.4e-13 Score=122.07 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=62.2
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-------CCCCCcHHHHHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-------TTLIPNYTVKALIANWC 303 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pN~~l~~~i~~~~ 303 (828)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|..+|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998777789999999864 67888999999999985
No 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.6e-13 Score=115.84 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=57.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003347 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL-----GLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|++++...++.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 346789999999999999999999999999999999986 35679999999999999999776543
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=108.43 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=51.2
Q ss_pred CCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcCC-CCCCCCc
Q 003347 233 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLA-HTTLIPN 292 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~-~~~l~pN 292 (828)
.-.+++++.||||+++|.|||+++ |||+||+.||.+|+... ..+||.||+++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 99999999999999864 367999999854 4566666
No 67
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.7e-12 Score=104.96 Aligned_cols=55 Identities=7% Similarity=0.276 Sum_probs=49.8
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.||+++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4678999999999999999999999999999999997666789999999887654
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.1e-12 Score=117.44 Aligned_cols=68 Identities=18% Similarity=0.376 Sum_probs=59.9
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
.+++.||||++.|.+||+++|||+||+.||.+|+..+ ..+||.|++++....+.+|..+.++++.+.+
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999864 3579999999999999999887777777654
No 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=104.53 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=52.5
Q ss_pred CCCCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003347 234 VPIPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
-.+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.||+++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccccc
Confidence 3467899999999999999997 999999999999999874 679999999999888876
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=8.2e-10 Score=111.85 Aligned_cols=188 Identities=22% Similarity=0.254 Sum_probs=158.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4568999999999999999999999987643 368999999999999999999999998874
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..++++.|+.+|.+++..++..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 2467899999999999999999999999874 24678999999999999999999999998742
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
...++.|+.++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35788999999 6778889999999998853 3467889999999999999999999999887654
No 71
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.18 E-value=8.7e-10 Score=116.71 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=160.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++........
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 458899999999999999999999998752 2478999999999999999999999998864332111
Q ss_pred HHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 623 ANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv-~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..++.|. .++++++..++..++.+|..+...... ....+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1233333 245678899999999999988532110 012457888889999899999999999988743
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.++++.|+.++ +++..++..|+.+|..+.... ...++.|+.++.+.++.++..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 35788888888 667778888888888875321 1356788888888888899999888887752
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003347 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
..+++.|+.++.+++ ++..|...|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 234555555555433 444444444433
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.17 E-value=9.9e-10 Score=111.22 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=158.7
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003347 584 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 584 ~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+.+|.+++..++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4689999999999999999999999987742 368999999999999999999999998874
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003347 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
..++++.|+.+|.+.++.++..|+.+|..+.. .+.++.|+.+| +++..++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24678999999999999999999999998743 46789999998 6778899999999998853
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccc
Q 003347 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~ 822 (828)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3478999999999999999999999999853 2467889999999999999999999998877543
No 73
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.2e-11 Score=102.80 Aligned_cols=55 Identities=20% Similarity=0.606 Sum_probs=49.1
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCCCCcCCCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l 289 (828)
.+++++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.||+++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999999973 45679999999887654
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.15 E-value=2.1e-09 Score=107.95 Aligned_cols=184 Identities=22% Similarity=0.250 Sum_probs=158.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+..+.+++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999987643 3579999999999999999999999988742
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..+++.|+..|.++++.++..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 367899999999999999999999999874 23688999999999999999999999998742
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
.+.++.|+.++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56888999999 6778889999999998832 236888999999999999999999987754
No 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.3e-11 Score=100.41 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=50.2
Q ss_pred CcccccCccc-cccCC----eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003347 238 SDFCCPLSLE-LMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+..+||.||.++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998776789999999999888876
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=1.3e-11 Score=114.27 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC-CcHHHHHHHHH
Q 003347 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIAN 301 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~i~~ 301 (828)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++...++. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999998667899999999988776 45666666543
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=120.73 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=62.0
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN 301 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 301 (828)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++....+.||..+++.|..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 5788999999999999999999999999999999998766689999999999999999999888864
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=7.6e-12 Score=119.87 Aligned_cols=66 Identities=11% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC---------CCCCCCcHHHHHHHH
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA---------HTTLIPNYTVKALIA 300 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pN~~l~~~i~ 300 (828)
.++++|.||||+++|++||+++|||+||+.||.+|+..+..+||.||+++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999877668999998753 235668888887775
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.11 E-value=2.2e-09 Score=107.83 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=158.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+..|.+++..++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 578899999999999999999999987742 367999999999999999999999998774
Q ss_pred hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH
Q 003347 665 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 665 ~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
...+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+| +++..++..|+.+|..+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23679999999999999999999999998643 35788899998 6778899999999998753
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..++.++++.+|..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999832 2 367888899999999999999999988754
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.2e-11 Score=96.43 Aligned_cols=46 Identities=24% Similarity=0.653 Sum_probs=41.8
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 280 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 280 (828)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 45679987
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=5.5e-11 Score=99.74 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=52.3
Q ss_pred CCCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003347 235 PIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 456789999999999999 889999999999999999876 6899999999998888763
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.01 E-value=1.4e-08 Score=107.27 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=156.8
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHH
Q 003347 582 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661 (828)
Q Consensus 582 ~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~ 661 (828)
...+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|.+++..++..|+.+|..+...+....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 44578999999999999999999999999885 13578899999999999999999999998864332211
Q ss_pred HHHhhCChHHHHH-hhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch
Q 003347 662 KIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 739 (828)
Q Consensus 662 ~I~~~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e 739 (828)
..++.|.+ ++.+.++.++..|+.+|.++...... ....+++.|+.+| +++..++..|+.+|..+..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 12334442 45678999999999999998742211 1235678888888 6778888999999987653
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003347 740 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 740 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
...++.|+.++.+.++.++..|+++|..+....+ .+++.|..++.++++.+|..|...|..+.
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999865443 35688899999999999999999998775
No 83
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.9e-10 Score=98.61 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=48.1
Q ss_pred CCCCCcccccCccccccC----CeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCC
Q 003347 234 VPIPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHT 287 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~ 287 (828)
-.+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356788999999999999 9999999999999999999874 46799999988764
No 84
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.97 E-value=2.5e-09 Score=131.15 Aligned_cols=272 Identities=15% Similarity=0.077 Sum_probs=194.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...++.|++.+++.+++++..|+..|..+....+. .+.. .+.++.|+.++.++++.++..|+.+|.+++......
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 56788999999999999999999999988765432 1211 257888999999999999999999999997532111
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhh-----------cC--------
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLL-----------GN-------- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL-----------~s-------- 678 (828)
-.-.-.+.++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 0000124677888888888899999999999999876544443322 14566666666 22
Q ss_pred ---CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHH
Q 003347 679 ---GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 754 (828)
Q Consensus 679 ---~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv 754 (828)
.+..+++.|+.+|..|+..... . +-..+++.+..++ +++..+++.|+.+|..++........-.-.+.++.|+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--E-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--G-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1224688899999998764321 1 2234667777777 5678899999999999998544221112245689999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 755 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+.+.++.++..|+++|.+++...+.......-.++++.|+..+.++++++|+.|.+.|..+..
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887432111011113567888888988899999999999988764
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.6e-10 Score=90.76 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=41.5
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 280 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 280 (828)
.+.+++.||||++.|++||+++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999875 55679987
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.6e-10 Score=95.88 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
...+++.||||++.|.+||+++|||+||+.||.+|+..+ .+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 345789999999999999999999999999999999875 6799999988754
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.94 E-value=1.6e-10 Score=94.62 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=48.8
Q ss_pred CcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003347 238 SDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
+++.||||++.|.+| ++++|||+|++.||.+|+... .+||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCccceeee
Confidence 568899999999998 789999999999999999874 689999999998887765
No 88
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.90 E-value=8e-09 Score=126.74 Aligned_cols=273 Identities=16% Similarity=0.113 Sum_probs=195.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH--HH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV--IA--NCGAINILVDMLHSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~--i~--~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
+.+.++.|++.+.++++..+..++..|..++...+..... +. -...++.|+.++.++++.++..|+.+|.++....
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999998754322110 00 1246778888888899999999999998776432
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.....-.-...++.|+.++.+++..++..|+.+|..|+..... .+.. .++++.++.++++.++.++..|+.++.++
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 2111101125778888899999999999999999998763221 1211 25788888889988999999999999999
Q ss_pred hhcchhHHHHHH---hCcHHHHHHhc-----------CC------------ChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003347 695 SIYHENKARIVQ---AGAVKHLVDLM-----------DP------------AAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 695 s~~~~n~~~iv~---~G~V~~Ll~LL-----------~~------------~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
+.....+. .+. ..+++.|+..+ .. +..++..|..+|..|+.... ..+. ..
T Consensus 284 ~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PH 359 (852)
T ss_dssp TTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred hcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HH
Confidence 87543332 222 35667777665 11 11345667777777775321 1122 13
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.++.+.+++.+.++..|+.|+.+|.+++.+.++.... .-.++++.|+.++.+.++++|..|.++|..+...
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5778888888899999999999999999887643222 2246789999999999999999999999887664
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=8.1e-10 Score=91.83 Aligned_cols=52 Identities=15% Similarity=0.438 Sum_probs=46.6
Q ss_pred CCCCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 234 VPIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
..+++++.||||++.|.+| |+++|||+||+.||.+|+... .+||.||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccCc
Confidence 3467889999999999999 889999999999999999874 689999998864
No 90
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.2e-09 Score=93.53 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCCcccccCccccc--cCCeecC--CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003347 235 PIPSDFCCPLSLELM--TDPVIVA--SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm--~dPV~~~--~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
...+++.||||++.| .||++.+ |||+||+.||.+||..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999998 5677776 999999999999998777789999999887654
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.84 E-value=1.5e-09 Score=92.73 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=49.5
Q ss_pred CCCCcccccCccccccCCe---ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003347 235 PIPSDFCCPLSLELMTDPV---IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV---~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
...+++.||||++.|.+|. +++|||+||+.||.+|+... .+||.||+++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 4567899999999999874 46999999999999999865 689999999998887776
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.83 E-value=1.1e-07 Score=110.50 Aligned_cols=227 Identities=12% Similarity=0.100 Sum_probs=159.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.+.+.+++.++.++..|+..|..++...... ......+|.|..++.++++.++..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 456788888888999999999999999998754321 223578999999999999999999999999886432111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc--h
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--E 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~--~ 699 (828)
......++.+..++.+.+..+|..++.+|..++..-.. ......+++.++.++++.++.++..|+.+|..++..- +
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 12235788888899888999999999999988752111 1123467899999999999999999999999987732 2
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
.+....-..+++.+..++ +++..++..++.+|..++..-.. ... ....++.+..++.+.++.+|..|+.+|..++.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 222223455677777777 56677777777777666542111 111 12345666666666666777766666665554
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.83 E-value=4.4e-08 Score=113.70 Aligned_cols=264 Identities=12% Similarity=0.032 Sum_probs=195.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...++.+.+.+++.++.++..++..|..++..-.. .. .....+|.|..++.+++++++..++.+|..+...-.. ..
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~ 398 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ 398 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH
Confidence 45778888899999999999999999888753211 11 1235789999999998999999999998887532111 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.....++.|..++++.+..++..++.+|..++..-... ......++.+..+|.+.+..++..|+.+|..++..-+..
T Consensus 399 -~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 399 -LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp -HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 22356788889999889999999999998886411100 111245788899999999999999999999997743322
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.....+++.|..++ +++..++..++.++..++..-. .. ......++.|+.++.+.++.+|..++.+|..++..-+
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QD-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HH-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HH-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 23456788888877 5667788889999988876321 12 2223578999999999999999999999999997543
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
. ......+++.|..++.+.+..+|..|..+|..+..
T Consensus 552 ~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 552 N---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 12234567778888888899999999999987753
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.79 E-value=5e-08 Score=116.96 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=152.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHH-HHhhcCCCHHHHHHHHHHHHHchhc--chhHH
Q 003347 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL-VDLLGNGTPRGKKDAATALFNLSIY--HENKA 702 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L-v~LL~s~~~~~~~~Al~aL~nLs~~--~~n~~ 702 (828)
..|.++++.|+++++..|..|+.+|.+|+.++..+..+...+++..+ ..+|.+.+..++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45677888899999999999999999999988889999888888775 5678888999999999999999984 57889
Q ss_pred HHHHhCcHHHHHHhcCC---------------C-------hHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc
Q 003347 703 RIVQAGAVKHLVDLMDP---------------A-------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL~~---------------~-------~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+++.|+++.|..+|.. . ..+.+.++.+|++||. ..+....+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 99999999999988710 0 1244578899999997 55667788888899999998843
Q ss_pred ---CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003347 760 ---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV---PPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 760 ---~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v---~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
....++..|+.+|+.|+..+....+.+...+.. ..|..+..+.. ..+..+..+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 357899999999999999999888888877643 33333333433 34556667777653
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.76 E-value=2.3e-07 Score=109.32 Aligned_cols=263 Identities=16% Similarity=0.112 Sum_probs=180.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH-H
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-S 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k-~ 620 (828)
+..++.+.+.+.+.++.+|..|+.++..+...+++. +.+.++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 456788999999999999999999999998876553 333578999999999999999999999999997653211 0
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh----
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI---- 696 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~---- 696 (828)
.....+.+..|+..|...++-.+...+.+|..+...++.. ...+++.+..+|++.+..++..|++++.++..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0111234677777777778878888888887776433211 12567888888998899999999999999864
Q ss_pred cchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-Cch------------------h-HHHH------HhCC--
Q 003347 697 YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPD------------------G-RVAI------GQEN-- 748 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e------------------~-r~~i------~~~g-- 748 (828)
+++... .+-..+.+.|+.+++++..++..|+..|..++. +++ - +.++ .+..
T Consensus 273 ~~~~~~-~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYN-MLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHH-HHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 222222 233455566776666667777777777776653 111 0 1111 1222
Q ss_pred --cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003347 749 --GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 749 --~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.++.|.+++.+.+...+..++.+|..+|...+.... ..++.|+.++....+.++..+...++.+
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 345566666778999999999999999987653222 2456666666666665555554444433
No 96
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.75 E-value=6.5e-08 Score=108.71 Aligned_cols=274 Identities=12% Similarity=0.060 Sum_probs=189.1
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC
Q 003347 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~ 616 (828)
.+.++.|++.+.++ ++.++..|+..|..++... +..-.... ...++.++.+|.++ ++.++..|+.++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999988 8999999999999998743 11100001 14778888999887 7999999999999874321
Q ss_pred c-cH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 617 N-NK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 617 ~-~k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
. +. ......-.++.+...+.+++..++..++.+|..+...... +..+ ..++++.++..+++.++.++..|+.++.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 10 0001111355666777778899999999999988753211 1111 1156777778888889999999999999
Q ss_pred HchhcchhHH------------------HHHH---hCcHHHHHHhcC-C-------ChHHHHHHHHHHHHHhCCchhHHH
Q 003347 693 NLSIYHENKA------------------RIVQ---AGAVKHLVDLMD-P-------AAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 693 nLs~~~~n~~------------------~iv~---~G~V~~Ll~LL~-~-------~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+++....... .+++ ..+++.|+..+. . +..++..|+.+|..|+..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 8876431110 1111 346677777662 1 23567788888888876322 12
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003347 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+. ...++.+...+.+.+...|+.|+.+|..++.+.. +..... -..+++.|+.++.+.++++|..|.++|..+....
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2356777788888999999999999999997543 111111 1568999999999999999999999999887654
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=2.7e-09 Score=100.38 Aligned_cols=55 Identities=16% Similarity=0.439 Sum_probs=50.0
Q ss_pred CCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003347 237 PSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
++++.||||++.|++| |+++|||+||+.||.+|+... .+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5789999999999999 899999999999999999875 589999999988777665
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.72 E-value=5.7e-09 Score=86.59 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=42.8
Q ss_pred CcccccCccccccCC-eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999998 678999999999999999865 689999998764
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.71 E-value=8.2e-08 Score=115.10 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=148.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhccCc--chHHH
Q 003347 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIE--DNKIK 662 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv-~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~ 662 (828)
.|.+++..|++.++..+..|+.+|.||+.++..+..+...|+|.+++ .+|.+.+.+++..|+++|.||+... +....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45567788999999999999999999998888889999999998865 5688889999999999999999754 55677
Q ss_pred HHhhCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-C-
Q 003347 663 IGRSGAIGPLVDLLGNGT---------------------PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D- 718 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~---------------------~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~- 718 (828)
+...|++++|..+|+... ..+...++.+|.+||.. .+....+...|+++.|+.+| +
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 888999999999986311 12345678899999884 45556788899999999987 2
Q ss_pred --CChHHHHHHHHHHHHHhC-CchhHHHHHhCCc---HHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 719 --PAAGMVDKAVAVLANLAT-IPDGRVAIGQENG---IPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 719 --~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~---I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
....+...|+.+|..|+. +++....+.+.+. ...+..+.. .+...+..++++|+|+..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 346788999999999999 5566677777654 233333333 444456788999999853
No 100
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.6e-09 Score=89.23 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=46.4
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+.+++.||||++.+.+ |+++|||+||+.||.+|+.. ..+||.||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 46678999999999999 99999999999999999984 578999999987654
No 101
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=2.8e-09 Score=85.21 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.+++.||||++.|.+||+++|||+||+.||.+| ...||.||+++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 367899999999999999999999999999883 46799999987653
No 102
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.69 E-value=7.5e-09 Score=82.03 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=42.3
Q ss_pred CcccccCccccccC----CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 238 SDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 7889999999999999999987 78999998875
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.7e-08 Score=85.28 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=45.6
Q ss_pred CCCCcccccCccccccCCeec---CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 235 PIPSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
+..++..||||++.|.+|+.+ +|||+|++.||.+|+... .+||.||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 467789999999999988765 999999999999999875 5899999987653
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=2.8e-08 Score=82.69 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=44.0
Q ss_pred CCCCcccccCcccccc---CCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 235 PIPSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
...++..||||++.|. +|++++|||+|++.||.+|+..+ .+||.||.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 3457789999999884 56779999999999999999875 5799999988653
No 105
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.61 E-value=2.6e-08 Score=91.54 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCcccccCccccccCCe------------------ecCCCcchhHHHHHHHHhc----CCCCCCCCCCcCCC
Q 003347 236 IPSDFCCPLSLELMTDPV------------------IVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV------------------~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~ 286 (828)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456679999999999987 6899999999999999963 34679999988765
No 106
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.61 E-value=1.7e-08 Score=79.99 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=42.8
Q ss_pred CCCcccccCccccccC---CeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 236 IPSDFCCPLSLELMTD---PVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---PV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+.++..||||++.|.+ |++++ |||.|++.||.+|+... .+||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999998 88887 99999999999999864 68999998764
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=88.25 Aligned_cols=50 Identities=14% Similarity=0.487 Sum_probs=44.3
Q ss_pred CCCcccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 236 IPSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4577899999999988 8889999999999999999864 689999998764
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=85.07 Aligned_cols=50 Identities=12% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCcccccCccccccCC---eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 237 PSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.++..||||++.|.+| ++++|||.|++.||.+|+... .+||.||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCCC
Confidence 4678899999999998 778999999999999999875 6899999987653
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.53 E-value=2.6e-08 Score=109.43 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=45.2
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003347 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
...||||.+.+.+||+++|||+||+.||..|+..+..+||.||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37899999999999999999999999999999865678999999987643
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.52 E-value=1.8e-08 Score=85.36 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=40.4
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
+++.||||++.+.|||+++|||+ ||+.|+.+| .+||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999999 679999998764
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=2.9e-08 Score=93.29 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=51.0
Q ss_pred CCCcccccCccccccCC-------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcH
Q 003347 236 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 293 (828)
-++.+.||||++.+.+| |+++|||+|+..||.+|+... .+||.||.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999875 6899999999988887763
No 112
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=9.1e-08 Score=81.13 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=39.5
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
+++.||||++.+.+||+++|||+ ||+.|+.++ ..||.||+++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 45679999999999999999999 999999643 6799999988763
No 113
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.39 E-value=5e-06 Score=97.82 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=182.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
++.+..+-+.|++++.+.+..++..+..+.....+. ..+.+.++.++.+++..++..+..++.+++.... ..
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--e~ 83 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--DM 83 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH--HH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc--hH
Confidence 456788889999999888888777665443322111 2456778889999999999888888877754211 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
+ .-++..|.+-|.++++.++..|+.+|.++.. ++... ..++.+..+|.+.++.+++.|+.+|.++......
T Consensus 84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~- 154 (591)
T 2vgl_B 84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ- 154 (591)
T ss_dssp H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-
T ss_pred H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-
Confidence 1 2346778888899999999999999998852 22222 3367899999999999999999999999873221
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+.+.+.++.|..+| +++..++..|+.+|..++....... .-...+.+..|+..+...++..+-..+.+|..++..+
T Consensus 155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 223468899999999 6778899999999999998543210 0011234667777777788888888888888777655
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+.... .+++.|..++++.++.++..|..++..+..
T Consensus 234 ~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 234 DREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred hHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 43322 346777778888888888888888777653
No 114
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.39 E-value=6.6e-06 Score=100.24 Aligned_cols=273 Identities=12% Similarity=0.060 Sum_probs=187.3
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 003347 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 615 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~--~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~ 615 (828)
...++.|++.+.++ ++.++..++..|..++..-. ...+.. ...++.|...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999988 89999999999999887421 111222 25677788888776 688999999999987632
Q ss_pred -Ccc-HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 616 -DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 616 -~~~-k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..+ .........++.+...+...+.+++..++.+|..+..... .-.......+++.++..+.+.++.++..|+.++.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 0001111256677777878889999999999998875322 1111122367888888888888999999999998
Q ss_pred Hchhcchh---------------------HHHHHHhCcHHHHHHhcC--------CChHHHHHHHHHHHHHhCCchhHHH
Q 003347 693 NLSIYHEN---------------------KARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 693 nLs~~~~n---------------------~~~iv~~G~V~~Ll~LL~--------~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+++..... ..+-.-..+++.++..+. .+..++..|+.+|..++..-. ..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hh
Confidence 88764210 000011345677777762 134567777788877765321 11
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+. ...++.+...+.+.++.+|+.|+.+|..++.+.. +.....+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 12 1346667777788899999999999999997653 3222222 34789999999999999999999999988765
No 115
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=5.9e-08 Score=86.03 Aligned_cols=67 Identities=13% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCcccccCccccccCCeec---CCCcchhHHHHHHHHhc----C---CCCCCC--CCCc--CCCCCCCCcHHHHHHHHHH
Q 003347 237 PSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDL----G---LFVCPK--TRQT--LAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pN~~l~~~i~~~ 302 (828)
.+.|.||||++.+.+|+++ +|||+||+.||.+||.. | ...||. |+.. +....+ .+....++++.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 3578999999999999875 79999999999999973 3 236999 9987 554332 233335667777
Q ss_pred HH
Q 003347 303 CE 304 (828)
Q Consensus 303 ~~ 304 (828)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 116
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.35 E-value=1.2e-05 Score=97.96 Aligned_cols=273 Identities=13% Similarity=0.109 Sum_probs=184.8
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 003347 542 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~-~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
...++.+++.+..+ +..++..|+..|..++..-..+-. .......++.+...+.+.+.+++..++.+|..+... ..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 45678888888876 688999999999988753221100 011113577777888888899999999999988643 22
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-------------------hHHHHH--hhCChHHHHHhh
Q 003347 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-------------------NKIKIG--RSGAIGPLVDLL 676 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-------------------~k~~I~--~~g~I~~Lv~LL 676 (828)
.-...+....++.++..+.+.+..++..|+..+.+++.... ....+. -...++.++.+|
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 11122233677888888888888999999988887764310 000000 124567777777
Q ss_pred cC-------CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch--hHHHHHh
Q 003347 677 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD--GRVAIGQ 746 (828)
Q Consensus 677 ~s-------~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e--~r~~i~~ 746 (828)
.. .+...++.|+.+|..|+..-.. .+ -..+++.+...+ +++..+++.|+.+|..++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888999999988763321 11 224556666666 6678889999999999998432 222222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhH--HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 747 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC--SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~--~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...++.|+..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+...
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999998644210 000 124577788888775 88999999988877653
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.30 E-value=7.9e-06 Score=96.70 Aligned_cols=250 Identities=13% Similarity=0.081 Sum_probs=167.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~ 621 (828)
-.+..|.+.|++.++.++..|++.|..+.. ++ +. ...++.+..+|.+.++.++..|+.+|.++.. +++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 467889999999999999999999999874 22 22 2568889999999999999999999999964 23211
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC---------------CCHHHHHH
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN---------------GTPRGKKD 686 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s---------------~~~~~~~~ 686 (828)
.+.++.+..+|.+.++.++..|+.+|..++..+... .-.-...++.|+.+|.+ .++-.+..
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 267788888999999999999999999998653211 11113678888887753 36778888
Q ss_pred HHHHHHHchhcchhHHHHHHhCcHHHHHHhcC-------CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003347 687 AATALFNLSIYHENKARIVQAGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-------~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+.+|..++...... ....++.|..++. .+..++-.|+.++..+...+..+. .++..|..++.+
T Consensus 254 il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~ 324 (618)
T 1w63_A 254 ILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN 324 (618)
T ss_dssp HHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC
Confidence 888998887754321 1233344444431 123456666666666644322111 245666677777
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++.+|..|+.+|..++...+. .+ + .....++..+.+.+..+|++|..+|..+..
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~p~---~~-~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTDHN---AV-Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHHHH---HH-G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHHHHHhhCHH---HH-H-HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 7777777777777777764432 11 1 234456666666666666666666655543
No 118
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.29 E-value=2.5e-06 Score=103.73 Aligned_cols=270 Identities=12% Similarity=0.125 Sum_probs=179.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc--
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-- 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-- 618 (828)
...++.+.+.+.+.++..+..|+..|..++.... +.-.... ...++.|+..+.++++.++..++++|..++..-..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 4567788888888899999999999999987532 2111111 25788999999999999999999999988642100
Q ss_pred --HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--hHHHHHh--hCChHHHHHhhcCC--CHHHHHHHHHH
Q 003347 619 --KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNG--TPRGKKDAATA 690 (828)
Q Consensus 619 --k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~--~g~I~~Lv~LL~s~--~~~~~~~Al~a 690 (828)
... -...++.|+..|.+. ..++..|+.+|.+++..-. ....+.. ...++.|+.++.+. +..++..++.+
T Consensus 447 ~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 447 DPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp CTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 001 124577788888775 8899999999988864211 0011111 24578888888854 37889999999
Q ss_pred HHHchhcchh-HHHHHHhCcHHHHHHhcCC----------------ChHHHHHHHHHHHHHhCCchhHHHHH--hCCcHH
Q 003347 691 LFNLSIYHEN-KARIVQAGAVKHLVDLMDP----------------AAGMVDKAVAVLANLATIPDGRVAIG--QENGIP 751 (828)
Q Consensus 691 L~nLs~~~~n-~~~iv~~G~V~~Ll~LL~~----------------~~~v~~~Al~~LanLa~~~e~r~~i~--~~g~I~ 751 (828)
|..+...... ....+ ..+++.+++.+.. ...++..++.+|.+++..-.. .+. -...++
T Consensus 524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~ 600 (861)
T 2bpt_A 524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMG 600 (861)
T ss_dssp HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHH
T ss_pred HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHH
Confidence 9999774322 12222 2456666665521 123556788888888762221 111 123577
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 752 VLVEVVELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 752 ~Lv~lL~s~s~-~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++.++...+. .+++.++.++..++...+......+ ..+++.|...+...++.++..|..++..+..
T Consensus 601 ~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77888877766 8899999999888865432222111 2368888888877788889888888776644
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.28 E-value=2.3e-05 Score=92.71 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=149.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..++.+.+.|.+.++.++..|+.++..+...+++.. .++++.|..+|.+.|+.++..|+.+|..++........
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 4568889999999999999999999999998776532 26888889999999999999999999998754221100
Q ss_pred HHHcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHhccCcch-HH------------------------
Q 003347 622 IANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSVIEDN-KI------------------------ 661 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s---------------~~~e~~~~Aa~aL~nLS~~~e~-k~------------------------ 661 (828)
.-...++.++.+|.+ .++-.+...+.+|..+...+.. ..
T Consensus 216 -~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 -HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp -HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 112456666665542 2455555555555555432210 00
Q ss_pred -----HHH--------hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHH
Q 003347 662 -----KIG--------RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKA 727 (828)
Q Consensus 662 -----~I~--------~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~A 727 (828)
.+. ...++..|..+|.+.++.++..|+.+|..++.... .++ ......++..+ +++..++..|
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHHH
Confidence 000 01245667777777777777777777777765322 122 22445566666 6678888889
Q ss_pred HHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003347 728 VAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 728 l~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+.+|..++...... . .+..|.+.+.+.+...+..++.+|..+|..
T Consensus 371 lelL~~l~~~~nv~-~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 371 MELSFALVNGNNIR-G-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHCCSSSTH-H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99988888743321 1 356777778788899999999999999875
No 120
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.26 E-value=4e-05 Score=77.78 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=158.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~ 620 (828)
+..+..|+.+|...++.++.+|+..|-.+-+.-+..-....-...++.++.++.+.|..+...|+.+|..|-.+ +-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788999999999999999999999999887433333333346899999999999999999999999888655 33333
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
.+.. .+..|..++++++.-.+++|+..|..|......+ +.+..+..++.+.+.+++..|+.+|.|++...+.
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 3332 4677888899999999999999999995443333 4467888899888999999999999999885543
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHH-HH-ccCCHHHHHHHHHH
Q 003347 701 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE-VV-ELGSARGKENAAAA 771 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~-lL-~s~s~~~ke~Av~~ 771 (828)
.. +-.+++.-+-.+| +.++.+++.|+.+|..+.+.+--...+-+.-.+-..++ +. ..|.|..+..|-.+
T Consensus 184 ~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 184 SG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 32 2234455566677 56889999999999999986433111111112222232 22 35777777666443
No 121
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.26 E-value=4.1e-07 Score=74.65 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCcccccCccccccCCeec--CCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 236 IPSDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
-+++..|+||++-++|+|++ ||||. ||..|+.+|+..+ ..||.||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence 34677899999999999988 99999 8999999999864 679999998753
No 122
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.25 E-value=2.5e-06 Score=95.66 Aligned_cols=268 Identities=10% Similarity=0.081 Sum_probs=182.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC--ccH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND--NNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~--~~k 619 (828)
....|+..|.+.++.+ ..++..|..++....... .-.+.++.|+..+.++ ++.+++.|+.+|..++..- ..-
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 3456888888877777 888888888887531110 1147899999999988 9999999999999987431 110
Q ss_pred HHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc-h-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003347 620 SAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED-N-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e-~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
... -...++.++..|.+. +..++..|+.++.++...-. + .......-.++.|..++.+.+..++..++.+|..++
T Consensus 167 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 001 124677888899887 78999999999998754211 1 000011124666777788889999999999999998
Q ss_pred hcchhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH------------------HHh---CCcHHH
Q 003347 696 IYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA------------------IGQ---ENGIPV 752 (828)
Q Consensus 696 ~~~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~------------------i~~---~g~I~~ 752 (828)
...... ...+..++++.++..+ +.+..++..|+..|..++........ +.+ ...+|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 743221 1111126777777766 67788889999999888864311111 111 224666
Q ss_pred HHHHHcc-------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 753 LVEVVEL-------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 753 Lv~lL~s-------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+++.+.. .+...+..|+.+|..++...++ .++ ..+++.+...+.+.+.+.|+.|..+|..+...
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 6666643 2457899999999999876542 121 24677788888888999999999999988753
No 123
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.25 E-value=1.7e-05 Score=96.40 Aligned_cols=274 Identities=13% Similarity=0.085 Sum_probs=185.8
Q ss_pred hhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCh-hhHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhc
Q 003347 541 IETQVRKLVEDLKST-SLDTQREATAELRLLAKHNM-DNRMVIA--NCGAINILVDMLHSS--ETKIQENAVTALLNLSI 614 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~-~nr~~i~--~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~ 614 (828)
+.+.++.|++.+.++ ++..+..++..+..+++.-. +.+ .+. -...++.++..+.++ ++.++..|+.+|.++..
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999988 89999999999998887422 111 000 113567777788776 89999999999988642
Q ss_pred C-CccH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 003347 615 N-DNNK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 615 ~-~~~k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
. ..+- ........++.|...+.+++..++..++.+|..+..... ....+ ....++.+...+.+.+..++..|+.+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 1110 000112256667778888899999999999988875321 12222 11566777778888899999999999
Q ss_pred HHHchhcchhH-----------------HHHHHhCcHHHHHHhcCC--------ChHHHHHHHHHHHHHhCCchhHHHHH
Q 003347 691 LFNLSIYHENK-----------------ARIVQAGAVKHLVDLMDP--------AAGMVDKAVAVLANLATIPDGRVAIG 745 (828)
Q Consensus 691 L~nLs~~~~n~-----------------~~iv~~G~V~~Ll~LL~~--------~~~v~~~Al~~LanLa~~~e~r~~i~ 745 (828)
+..++...... ..-.-..+++.|+..+.. +..++..+..+|..++..-. ..+.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 99987753211 011115577788877721 23567778888888876321 1111
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...++.+.+.+.+.+...|+.|+.+|..++.+.. ......+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1245666677778899999999999999997642 3222222 24788999999999999999999988877654
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5e-07 Score=77.76 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=40.7
Q ss_pred CcccccCccccccC--------------Ceec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTD--------------PVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~d--------------PV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4455 599999999999999875 689999998754
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.17 E-value=7.4e-07 Score=72.87 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CcccccCccccccCCeec--CCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.+..|+||++-++|||++ ||||. ||+.|+.+|+..+ .+||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 456799999999999998 99998 9999999999865 679999998753
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.16 E-value=4.2e-06 Score=106.67 Aligned_cols=272 Identities=11% Similarity=0.091 Sum_probs=185.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
...+..|++.+.+.+++++..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 35688999999999999999999999876553211000001124677888999889999999999999999754222 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH------HHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHc
Q 003347 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK------IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNL 694 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k------~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nL 694 (828)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+..++..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677888888888888998998888876421111 11112367899999998 47889999999999998
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHH
Q 003347 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L 772 (828)
+........-.-...++.|+..| +++..++..|+.+|..++...... +. ...++.|+..+... +...+..++.++
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 75211100001144666677777 567788999999999999754322 22 24588888888653 345677788888
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..++...+...... -..+++.++..+.+.++.+|+.|..++..+...
T Consensus 239 ~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 239 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 88877544211100 146789999999888888999998888776553
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.06 E-value=6.4e-07 Score=76.73 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=40.0
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
++..|+||++.+.|||++||||. ||+.|+.+|+ .||.||+++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 45679999999999999999999 9999999873 799999988763
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.02 E-value=3.2e-06 Score=76.53 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcccccCccccccCC------------------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 238 SDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
++-.|+||++-|.+| ++++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999987 33799999999999999987 478999999864
No 129
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.02 E-value=7.7e-07 Score=97.22 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.+++.||||++.+.+||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 569999998764
No 130
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.98 E-value=1.7e-05 Score=101.08 Aligned_cols=228 Identities=13% Similarity=0.110 Sum_probs=161.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH--
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-- 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k-- 619 (828)
...++.|++.|.+.++.+|..|+..|..++..-.. ..+ ...++.|+..|.++++.++..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 56788999999999999999999999999875433 111 236778888888888899999999998886431111
Q ss_pred ----HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 620 ----SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 620 ----~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..-.....++.|+..+. +++...+..|+.+|..++.. ..... .....++.|+..|.+.+..++..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11123467888999998 57899999999999988631 11110 01245778888888888999999999999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHccCCHHHHHHH
Q 003347 693 NLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
.++...... + -...++.|+..| ..+..++..++.+|..++..... .+.. ...++.++..+...++.+|+.|
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a 275 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYC 275 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 998754332 1 345678888877 22233455667777766652111 2221 3568999999988889999999
Q ss_pred HHHHHHHhhCCH
Q 003347 769 AAALLQLCTNSS 780 (828)
Q Consensus 769 v~~L~~L~~~~~ 780 (828)
+.++..++...+
T Consensus 276 ~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 276 IQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHCh
Confidence 999999887644
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.96 E-value=4.7e-05 Score=78.60 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=134.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 003347 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDN-RMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIAN 624 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n-r~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~~I~~ 624 (828)
.+.+.+.+.++..+..|+..|..+....+.. ...+ ...++.|...|. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4777888999999999999999988752221 0001 145778888895 88999999999999999743111001112
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc--chh-H
Q 003347 625 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HEN-K 701 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~--~~n-~ 701 (828)
...++.|+..+.+.+..++..|..+|..+...... ...++.|...|++.++.++..++.+|..+... ++. -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34789999999999999999999999998764332 23578888999999999999999999996543 221 1
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003347 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
...+ ..+++.|+.+| +....++..|..+|..++.
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 36888899988 6778899999999988876
No 132
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.91 E-value=6.9e-05 Score=77.31 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=133.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccC-cchH-HHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHH
Q 003347 630 PLIHVLQTGSPEARENAAATLFSLSVI-EDNK-IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 630 ~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k-~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
.+...+.+.++..|..|+..|..+... +... ..+ ..+++.|..+|. +.+..++..|+.+|..|+..-.....-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 477788888999999999999888653 2210 000 145777888884 88999999999999999863222111233
Q ss_pred hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC-CHH-hH
Q 003347 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-SSR-FC 783 (828)
Q Consensus 707 ~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~-~~~-~~ 783 (828)
..+++.|++.+ +.+..+++.|..+|..++..... ...++.|...+.+.++.+|+.++..|..+... ++. ..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55788888888 67788999999999998875321 12577888888889999999999999996544 332 11
Q ss_pred HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 784 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 784 ~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...+ ..+++.|..++.+..+++|..|..+|..+..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222 2579999999999999999999998887654
No 133
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.89 E-value=0.00017 Score=81.06 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=157.8
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHhhcC---------------C--CHHHHHHHHH
Q 003347 589 ILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT---------------G--SPEARENAAA 648 (828)
Q Consensus 589 ~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g--~l~~Lv~lL~s---------------~--~~e~~~~Aa~ 648 (828)
.++..|.. .+...+..++.+|..|...+..|..+.+.+ .+++++.+++. + ....+.+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34555554 345667788888988888888888887653 46667654431 1 2567899999
Q ss_pred HHHHhccCcchHHHHHhhCCh--HHHHHhhcCC-CHHHHHHHHHHHHHchhcc-----hhHH-HHHHhCcHHHHHHhc-C
Q 003347 649 TLFSLSVIEDNKIKIGRSGAI--GPLVDLLGNG-TPRGKKDAATALFNLSIYH-----ENKA-RIVQAGAVKHLVDLM-D 718 (828)
Q Consensus 649 aL~nLS~~~e~k~~I~~~g~I--~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~-----~n~~-~iv~~G~V~~Ll~LL-~ 718 (828)
++|-|+..++....+...+.. ..|+++++.. ...+.+.++.+|.||.... .... .++..++ ..+++.| .
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998877777665543 6777778765 6899999999999998754 1122 2333445 4455655 2
Q ss_pred ---CChHHHHHHHHHHHH-------HhC---------------CchhHH-HH--------HhCC--cHHHHHHHHcc---
Q 003347 719 ---PAAGMVDKAVAVLAN-------LAT---------------IPDGRV-AI--------GQEN--GIPVLVEVVEL--- 759 (828)
Q Consensus 719 ---~~~~v~~~Al~~Lan-------La~---------------~~e~r~-~i--------~~~g--~I~~Lv~lL~s--- 759 (828)
.++++.+..-.+... +++ +|-.+. .+ -+.+ .+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 455555432222221 221 222221 22 2222 47899999973
Q ss_pred -------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003347 760 -------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 760 -------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.++.+..-||.=|..++++.|..+..+-+.|+-..++.|+.+.++.+|..|..++..+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35778888899999999999988888888999999999999999999999998887553
No 134
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=7e-06 Score=68.10 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 236 IPSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
-.++..|+||++-..|||++||||. ||..|+.+ ...||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 3457899999999999999999999 99999984 36799999988763
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.84 E-value=0.00072 Score=79.93 Aligned_cols=253 Identities=11% Similarity=0.118 Sum_probs=167.7
Q ss_pred hhHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003347 542 ETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L--~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+..++.+.+.| .+.++.++..|+.++..+.+.+++. +...+.++.|..+|.+.|+.++..|+.+|..++....
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence 45677888888 8889999999999999998876543 2224899999999999999999999999998865322
Q ss_pred HHHHHcCCHHHHHHhhc----CC-------------CHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhh----
Q 003347 620 SAIANANAIEPLIHVLQ----TG-------------SPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLL---- 676 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~----s~-------------~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL---- 676 (828)
..+ ...++.++..|. .+ ++-.+...+.+|..+...+ +.+..+. ..+..++..+
T Consensus 220 ~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 220 EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP 295 (621)
T ss_dssp HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence 111 133444444332 22 4667778888887776532 2233222 2333333322
Q ss_pred -----cCCCH--HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003347 677 -----GNGTP--RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 677 -----~s~~~--~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
++.+. .+...|+.++..+...++. ...++..|..+| +++..++-.|+..|..++........+. .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~-----~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNL-----LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 11222 6777888888888643332 224667788888 5778888899999999987543223332 3
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003347 749 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 749 ~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
....++..+. +.+..++..|..+|..++.. .....+ +..|...+...+...++.+...+..+
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677788888 88899999999999999854 233333 44555566556666666655555444
No 136
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.76 E-value=0.0012 Score=77.97 Aligned_cols=254 Identities=12% Similarity=0.129 Sum_probs=174.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCccHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL--~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
-.+..+.+.|+++++.++..|++.|..+.. ++ +++ ..++.+..+| .+.++.++..|+.++.++..... .
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence 357788899999999999999999999854 22 222 4678888899 88899999999999999864211 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc----CC-------------CHHH
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG-------------TPRG 683 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----s~-------------~~~~ 683 (828)
.+-..+.++.|..+|.+.++.++.+|+.+|..++..... . -...++.+++.|. .+ ++=+
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 111247899999999998999999999999998753321 1 1133444444332 21 4668
Q ss_pred HHHHHHHHHHchhc--chhHHHHHHhCcHHHHHHhc-C-C----------ChHHHHHHHHHHHHHhCCchhHHHHHhCCc
Q 003347 684 KKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-P----------AAGMVDKAVAVLANLATIPDGRVAIGQENG 749 (828)
Q Consensus 684 ~~~Al~aL~nLs~~--~~n~~~iv~~G~V~~Ll~LL-~-~----------~~~v~~~Al~~LanLa~~~e~r~~i~~~g~ 749 (828)
+...+.+|..++.. ++.+..+.+ .++.++..+ + + ...++-+|+.++..+...++.+. .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 88888888888763 233333332 333333322 1 1 22667778888877764433222 34
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 003347 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~lL~~L~~ 819 (828)
+..|..++.+.++.+|..|+..|..++...+. ...+ + .....++..+. +.+..+|.+|..+|..+..
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 66788888888999999999999999987642 1222 2 34667777777 7788899999998876654
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.7e-05 Score=66.70 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCCcccccCccccc--cCCeecCCC-----cchhHHHHHHHHhcCC-CCCCCCCCcCCCC
Q 003347 236 IPSDFCCPLSLELM--TDPVIVASG-----QTYERAFIKKWIDLGL-FVCPKTRQTLAHT 287 (828)
Q Consensus 236 ~p~~f~CpI~~~lm--~dPV~~~~G-----~ty~r~~I~~~~~~~~-~~cP~t~~~l~~~ 287 (828)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ .+||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999766 579999996 9999999999998743 6899999998653
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.71 E-value=4.4e-06 Score=78.08 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=92.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|+..|++.++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 457889999999888888888887765532 137999999999999999999999988742
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
..+++.|+..|++++..++..|+.+|..+. ...+++.|+.+|++.+..++..|+.+|.+|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 245899999999999999999999999874 235689999999988999999999998654
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.64 E-value=5.3e-06 Score=77.52 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003347 583 NCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
....++.|+.+|.++++.++..|+.+|.++.. ..++.|+.+|++.+..++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 34678899999999999999999988876531 137899999999999999999999988752
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 003347 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 733 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~Lan 733 (828)
..+++.|+.+|++.++.++..|+++|.++. ...+++.|+.++ +++..++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999875 235688899988 5677788888887754
No 140
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00035 Score=72.89 Aligned_cols=186 Identities=11% Similarity=0.143 Sum_probs=131.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccChhhHHHHHh-cCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCC---ccH-H
Q 003347 548 LVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIAN-CGAINILVDML-HSSETKIQENAVTALLNLSIND---NNK-S 620 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~-La~~s~~nr~~i~~-~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~---~~k-~ 620 (828)
+-+.+.+.++..+..|+..|.. +....+.......+ ...+..|...+ .+.+..++..|+.+|..|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567789999999999999999 87543221100011 14577888888 6789999999999999997421 111 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH--hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~--~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
. ..-.++.|+..+++....++..+..+|-.+...-+. .... -...++.|+..|++.++.++..++.+|..+....
T Consensus 101 y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 123688999999988888988888888877642110 0000 1145788888999999999999999999987743
Q ss_pred hh---HH-HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003347 699 EN---KA-RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 699 ~n---~~-~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
.. .. ..+...+++.|.+++ +++..++..|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 32 11 222368999999999 6788899999888888764
No 141
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.58 E-value=9.5e-06 Score=74.56 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=0.0
Q ss_pred ccccCccccccCCe-----------------e-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 240 FCCPLSLELMTDPV-----------------I-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~lm~dPV-----------------~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
-.|+||++-|.+|. + ++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999998853 2 489999999999999987 478999998754
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.58 E-value=0.0015 Score=73.50 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=152.5
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcC--cHHHHHHHHcC---------------C--CHHHHHHHH
Q 003347 547 KLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCG--AINILVDMLHS---------------S--ETKIQENAV 606 (828)
Q Consensus 547 ~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~G--aI~~Lv~lL~s---------------~--d~~v~e~A~ 606 (828)
.++..|+.. +.+.+.-++.+|..|.. .++.|..+.+.+ .++.++.++.. . ..+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 455556552 45567778899998888 457888887653 46777654431 1 356789999
Q ss_pred HHHHHhhcCCccHHHHHHcCCH--HHHHHhhcCC-CHHHHHHHHHHHHHhccCc--chHH----HHHhhCChHHHHHhhc
Q 003347 607 TALLNLSINDNNKSAIANANAI--EPLIHVLQTG-SPEARENAAATLFSLSVIE--DNKI----KIGRSGAIGPLVDLLG 677 (828)
Q Consensus 607 ~aL~nLs~~~~~k~~I~~~g~l--~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~--e~k~----~I~~~g~I~~Lv~LL~ 677 (828)
-++.-|+.++.....+...+.. +.|+.+++.. ...+..-++++|.||.... +.+. .+...++ ..++..|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999987766666655533 5677777754 5788899999999998754 2222 2333444 44556555
Q ss_pred CC---CHHHHHHHHH-------HHHHchhcchhH------------------------HHHHH--hCcHHHHHHhcCC--
Q 003347 678 NG---TPRGKKDAAT-------ALFNLSIYHENK------------------------ARIVQ--AGAVKHLVDLMDP-- 719 (828)
Q Consensus 678 s~---~~~~~~~Al~-------aL~nLs~~~~n~------------------------~~iv~--~G~V~~Ll~LL~~-- 719 (828)
.. ++++..+--. .+..|++.++.+ .++-+ ..++..|+++|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 4444332111 222333222222 22222 2377888888842
Q ss_pred ---------ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003347 720 ---------AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 720 ---------~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
++.+..-||.=++.++. +|+||..+-+.|+=..++++|.+.+++++.+|..++..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24455666777888888 999999888899999999999999999999999999877643
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.58 E-value=0.0031 Score=67.71 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=134.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..+++.|.+++...++.++..|..+-..+...-..++..+|+..|+......+..++..++++|.+|-.+..+...+
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 45788889999888899999999999844446667777788899999999999999999999999999998887777666
Q ss_pred HH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhh----------CChHHHHHhhc---CCCHHHHHHH
Q 003347 623 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRS----------GAIGPLVDLLG---NGTPRGKKDA 687 (828)
Q Consensus 623 ~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~----------g~I~~Lv~LL~---s~~~~~~~~A 687 (828)
+. ...|..|..++.+....+...|+.+|..+....+ +...+.+. -.++.|+.+|+ .++.+++.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 64 4688899999998888999999999999987554 33332221 24889999997 6689999999
Q ss_pred HHHHHHchhc---chhHHHHH----HhCcHHHHHHhc
Q 003347 688 ATALFNLSIY---HENKARIV----QAGAVKHLVDLM 717 (828)
Q Consensus 688 l~aL~nLs~~---~~n~~~iv----~~G~V~~Ll~LL 717 (828)
...|-.+... .+.+..++ +.|.-..+...+
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 9887766552 22233333 345445555555
No 144
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.53 E-value=0.0014 Score=66.54 Aligned_cols=216 Identities=14% Similarity=0.091 Sum_probs=157.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHH
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~ 662 (828)
+.+..|..+|+..|+.++.+|+.+|..+-.. +.......-...++.++.++++.+..+...|+.+|..|-... -....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4677899999999999999999999998654 222222333467999999999999999999999999886532 22222
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003347 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
+. ..+..|.+++.++++-....|+..|..|...... .+++..+..++ +.+..+...++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 22 3467899999999999999999999998332222 34566777788 567888999999999999854433
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHH-------Hhh-cCCCHHHHHHHHHH
Q 003347 742 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV-------ALS-QSGTPRAKEKAQAL 813 (828)
Q Consensus 742 ~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~-------~LL-~~g~~r~r~kA~~l 813 (828)
..+ .+.+..+-+++.+.++..++.|..+|..+....- .++.++.+. .+. ..|.|..+.+|..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPL-------LENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC-------CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc-------cHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 222 1345667778999999999999999999887631 123333332 333 46788888888776
Q ss_pred HHHh
Q 003347 814 LSYF 817 (828)
Q Consensus 814 L~~L 817 (828)
-..+
T Consensus 256 ~~~l 259 (265)
T 3b2a_A 256 SDLI 259 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 145
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00029 Score=73.51 Aligned_cols=189 Identities=10% Similarity=0.076 Sum_probs=132.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hcc-CcchHHHHHh-hCChHHHHHhh-cCCCHHHHHHHHHHHHHchhcch-hHHH-H
Q 003347 631 LIHVLQTGSPEARENAAATLFS-LSV-IEDNKIKIGR-SGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE-NKAR-I 704 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~n-LS~-~~e~k~~I~~-~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~~~~-n~~~-i 704 (828)
+...+.+.++.-|..|+..|.. +.. .........+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999998 763 2111100111 14477788888 68899999999999999985222 1111 1
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHH--hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003347 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
...-+++.+++.+ +....+++.+..+|..++.+-+- .... -...++.|...|.+.++.+|+.++.+|..++...+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2234788888888 56677888888888888763211 0010 012577888888989999999999999998876542
Q ss_pred ---hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 782 ---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 782 ---~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.....+...+++.|..++.+.++.+|..|..+|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 222233357899999999999999999999988877543
No 146
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.40 E-value=0.0081 Score=73.08 Aligned_cols=235 Identities=18% Similarity=0.123 Sum_probs=161.3
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 003347 544 QVRKLVEDLKSTS--------LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 615 (828)
Q Consensus 544 ~V~~Lv~~L~s~~--------~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~ 615 (828)
.+..|...|.+.+ +.++..|+-.|....-.+. ...+++.|..+|..++..+.+.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4666777776544 5567777777777644331 113577889999888877777888888766444
Q ss_pred CccHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003347 616 DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 693 (828)
Q Consensus 616 ~~~k~~I~~~g~l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL~n 693 (828)
..|.. ++..|+..+ .+.+..++..++..|.-+.. ++...++.+++.|.. .++-++..|+.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33332 345566554 34567788888888776543 234678888888874 577777777777654
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHH
Q 003347 694 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAA 770 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~ 770 (828)
-.....|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.+++++ ++.++.+|..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333332 3466677766 5667888889999998876432 3467777754 5689999999999
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
+|..+|.+++. ..++..|..++.+.++.+|..|...|..+-..
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 99999987752 23466778888888899999998888877554
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.38 E-value=0.0065 Score=65.26 Aligned_cols=178 Identities=11% Similarity=0.061 Sum_probs=128.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH-HhC
Q 003347 631 LIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-QAG 708 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv-~~G 708 (828)
++..|.+++...+..++.-|.. ++.+.+....++..+++..|+.+...++...+.++++||.+|..+.+.-.-++ ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3344555666666666666666 55567778888889999999999999999999999999999999877765555 567
Q ss_pred cHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHh--------CC--cHHHHHHHHc---cCCHHHHHHHHHHHH
Q 003347 709 AVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQ--------EN--GIPVLVEVVE---LGSARGKENAAAALL 773 (828)
Q Consensus 709 ~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~--------~g--~I~~Lv~lL~---s~s~~~ke~Av~~L~ 773 (828)
.|..|..++ .....++..|+.+|..++...+ +...+.+ .| .+..|+.+|. +++...+.+|...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 888899888 5567788999999999998554 3333222 11 2789999997 688999999999887
Q ss_pred HHhhCCH--H----hHHHHHhCCCHHHHHHhhcCC--CHHHHH
Q 003347 774 QLCTNSS--R----FCSMVLQEGAVPPLVALSQSG--TPRAKE 808 (828)
Q Consensus 774 ~L~~~~~--~----~~~~v~~~g~v~~L~~LL~~g--~~r~r~ 808 (828)
.+..+.+ + ....+-+.|.-..+...+... ++..++
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 7655432 2 222333456556677766664 334443
No 148
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.14 Score=50.24 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=149.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+.++..++..|..+-+.+|.+|+..|..+++.-++...- .+..|+.+++. +.-.+......+++.++.-. -
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---P 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---H
Confidence 578999999999999999999999999999977665333 35566667654 44555455667777776321 1
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.++ .+.+|.|..-+.-|++.++.+...+|..++. +++.-. +++..+..+|.+.+..-+..|+..|..|..++-
T Consensus 103 e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 111 2456777777788999999999999998865 333222 456778888998887777777777777755432
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+ .-...+|.|..|| +.+.-++..|+.+|.+|+. ++.-|..+ ...++-++..|..++......|..+..
T Consensus 177 ---~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 177 ---K-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ---H-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ---c-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2 2356788899999 4555566789999999999 55544433 334455667788888777777766654
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.20 E-value=0.0068 Score=66.35 Aligned_cols=244 Identities=13% Similarity=0.036 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.....++.+.+.+.+.++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+.+|.++...+-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 3445677888999888887777777887763321 1 25777788888899999999999999996443211
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHH
Q 003347 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
...+.+-+.|.+.++.++..|+-+...|.... ...+ .+++..+-+++.+.++.++.+|+.+|+.+...+..
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 24556777888999999999999988886432 2222 37899999999999999999999999999764321
Q ss_pred HHHhCcHHHHHHhc-CC---ChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003347 704 IVQAGAVKHLVDLM-DP---AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 704 iv~~G~V~~Ll~LL-~~---~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+..|+.-+ .. ++-..-..+.++..++...+. -.....++.|...|++.++.+...|+.++..+....
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 233344433 11 121222223333333322100 012345667777788899999999999999986533
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.. + ...++..|..++.+.++.+|-.|...|..+..
T Consensus 282 ~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 282 AK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 21 1 13456777778888888888888776655544
No 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.17 E-value=0.017 Score=71.06 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=181.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh---hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh--cCCc
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD---NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS--INDN 617 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~---nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs--~~~~ 617 (828)
+.+..|.+.+...... ..|+..+..|+..... .-..+. +.+|.++..+.+....|+..|-.++..+. .++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777654333 7888888888864421 112222 57888888887778889888887776663 2332
Q ss_pred cHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 618 NKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.. ...+|.|+..|++. .+..+..|+.+|..|+... ...++.. ..||.+.+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 22 34688899888765 5999999999999998643 3444443 7899999999999999999999999999
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003347 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
|..-+|+. =...+|.|++.+ +++. +.+++..|..-....+--..... =.+|.|..-|...+...+..++.++-
T Consensus 203 ~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 88544432 156788899987 5643 66677666665553332221110 12677777777778889999999999
Q ss_pred HHhhC--CHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcc
Q 003347 774 QLCTN--SSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~--~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~ 820 (828)
|||.- ++.....+ -...+|.|......- +|++|+.|..++..|.+.
T Consensus 277 n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99984 44333332 356788888876654 699999999999888664
No 151
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.70 E-value=0.0088 Score=65.43 Aligned_cols=237 Identities=10% Similarity=0.037 Sum_probs=129.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..|.+.++++++-++..|++.|..+.... - .+ ...+.+-+.|.+.++.|+..|+-+...|.... ...+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m----~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--M----LQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--T----HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--H----HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH
Confidence 35788899999999999999999999986643 1 11 34667788888999999999999998885432 2332
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC---CHHHHHHHHHHHHHchhcch
Q 003347 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al~aL~nLs~~~~ 699 (828)
+ ++++.+-.++.+.++-++.+|+++|..+...+. .++..|+.-+..+ ++-.+..-+..+..++..++
T Consensus 175 -~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 -K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp -H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred -H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2 689999999999999999999999999976542 1344445444443 34444444444444433220
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003347 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
. -.....++.|..+| +.+..++-+|+.++..+...+.. +. ..++..|..++.+.++.+|..|+..|..+...
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0 02244555666666 56677888888888777552221 11 23456677778888999999999999999887
Q ss_pred CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHH
Q 003347 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810 (828)
Q Consensus 779 ~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA 810 (828)
.+...+. .-.-+..++.+++..+.-.|
T Consensus 318 ~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 318 HPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp --------------------------------
T ss_pred CcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 7643322 23345555556554444333
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.30 E-value=0.33 Score=59.18 Aligned_cols=239 Identities=15% Similarity=0.060 Sum_probs=152.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHH
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+..+..|...|...+......|+..|..+-.++ .|. .++..|+..+ ...+..++..++.+|..+....
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---- 539 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR---- 539 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC----
Confidence 456788888888777655666777777653332 122 2455666654 4457888888999998775443
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcc
Q 003347 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~ 698 (828)
...++.+++.|.. .++.+|..++.++.--.....+ ..+|+.|+..+. +.+..++..|+.+|..+....
T Consensus 540 ----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 540 ----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 2457778877764 5677777766665422111111 234666666654 447789999999998876543
Q ss_pred hhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003347 699 ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
+ ..++.++.+| +.+..++..|..+|+.++...... .++..|..++...+..++.+|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 2 3566777766 467788888999999998743321 24567777888899999999999999998
Q ss_pred hCCHHhH-HHHHhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 003347 777 TNSSRFC-SMVLQEGAVPPLVALSQS--GTPRAKEKAQALLSYF 817 (828)
Q Consensus 777 ~~~~~~~-~~v~~~g~v~~L~~LL~~--g~~r~r~kA~~lL~~L 817 (828)
.+..+.. ..+ .+....|.....+ .++.++-.|.-.+.++
T Consensus 676 ~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 8654320 011 0123345555543 3455555555544444
No 153
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.29 E-value=0.0038 Score=50.16 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred CcccccCccccccCCeecCCCc-----chhHHHHHHHHhc-CCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 286 (828)
+.-.|.||++-..+|.+.||.. -|=+.||.+|+.. ++.+||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456999998888999889643 6999999999985 56789999988753
No 154
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.0036 Score=52.46 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCC
Q 003347 240 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 286 (828)
-.|+||.+++..=+. ..|||.|=..||.+||+.. ..+||.|+++...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 569999998874333 3699999999999999864 3689999988654
No 155
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.24 E-value=1 Score=44.24 Aligned_cols=213 Identities=12% Similarity=0.168 Sum_probs=141.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHH
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
.++..++.+|+.+-..+|.+|+.++.+++.. ++-.. ..+..|+-+++ +.........+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 5678899999998899999999999998754 32222 22444555554 45566666677777776531 111
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003347 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
++ .+.+|.+..=.+-++++.+.+-..+|..++..... .-.+++.-+..++ +++..-.-.|+..+..+.. .+-
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe--n~~ 176 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE--NSF 176 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT--TTH
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc--cCc
Confidence 11 24456666666778999999999999998774332 3345667777788 4443333344444443333 222
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 742 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 742 ~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+ ...+|.|..+|..++.-++..|+.+|.+++.-++..+..+. ..+.=+.+.++-++++..+.|..+.--
T Consensus 177 ~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 177 KYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 222 25799999999999999999999999999999987555442 233334555667777777766665443
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.12 Score=54.19 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=120.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhH--HHHH-hc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--C-c-cH
Q 003347 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNR--MVIA-NC-GAINILVDMLHSSETKIQENAVTALLNLSIN--D-N-NK 619 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr--~~i~-~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~-~-~k 619 (828)
|-+.|.+.++..|..|+..|..+....+... .... .. ..++.+-..+.+.+..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5588999999999999999988765432211 1111 12 3455666778888999999999999887542 1 1 12
Q ss_pred H--HHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003347 620 S--AIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~--~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
. ...-...++.|+.- |.++...++..+..+|..+........ .+++.++..+++.++.++..++.+|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2 22234567777764 778888899888888877654322211 124667777888899999999999988755
Q ss_pred cchhH---HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003347 697 YHENK---ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 697 ~~~n~---~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
....+ ....-..+++.+..+| +.+..+++.|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 32111 1111123444556666 6788999999998887766
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.02 E-value=0.0042 Score=54.45 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.3
Q ss_pred cccCccccccCCe-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 241 CCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 241 ~CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.||+|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888877555443 589999999999999998888899999988765
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.98 E-value=0.0088 Score=67.75 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=154.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHH--cC--------CCHHHHHHHHHHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDML--HS--------SETKIQENAVTALLN 611 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL--~s--------~d~~v~e~A~~aL~n 611 (828)
+...|+..|-++.+++|--|+-.||.+.+.....-...... ...-.|+-.| +. .-..|+|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56888899999999999999999998876542110000111 2222232222 11 135699999999998
Q ss_pred hhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHH
Q 003347 612 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 612 Ls~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
+ .+-... ..++..|+..+..+..+++..++-.|.++. ..+. -.++++.++.-|++.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 652222 345666666667788999999999999981 1111 23678888888999999999999999
Q ss_pred HHHchhcchhHHHHHHhCcHHHHHHh----c---CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHH
Q 003347 691 LFNLSIYHENKARIVQAGAVKHLVDL----M---DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~~G~V~~Ll~L----L---~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 763 (828)
|.-++ ....++.|+.+ | +.-..-+...+.+|+.|+.++.. +-.....||.|..++++.-..
T Consensus 323 LiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 323 LCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHH
T ss_pred hhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHH
Confidence 99988 22233333333 3 21122344566778888876631 111235689999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
+|..++.+|..+. .+.....+ ...++-..++.+++.+..+.+
T Consensus 391 VR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 9999999998877 22211111 223445567777777776654
No 159
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.65 E-value=0.0016 Score=69.67 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=38.8
Q ss_pred cccccCccccccC----Cee----cCCCcchhHHHHHHHHhcCC----------CCCCCCCCcCCC
Q 003347 239 DFCCPLSLELMTD----PVI----VASGQTYERAFIKKWIDLGL----------FVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~d----PV~----~~~G~ty~r~~I~~~~~~~~----------~~cP~t~~~l~~ 286 (828)
..-|+||...+.+ |-. ..|||.|-..||.+||+..+ .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999999988 543 36999999999999998521 369999998764
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.41 E-value=0.44 Score=49.12 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHH-hcCcHHHHHHHHcC-------C--C---HHHHHHHHHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDMLHS-------S--E---TKIQENAVTALL 610 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~~GaI~~Lv~lL~s-------~--d---~~v~e~A~~aL~ 610 (828)
.+..++..|..+ +.+..|+.+|..=-..-++--..+= ..|.|..|++=+-+ + . ..-..+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 456667667544 4567777666542221122222222 23888887663311 1 1 222355666666
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHH
Q 003347 611 NLSINDNNKSAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 611 nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
-++.+++.+..+.++...--|..+|+..+ +..|..+++++..|...++. -..+...+++|..++.+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 67889999999999986666777776554 56899999999999875443 333456799999999999999999
Q ss_pred HHHHHHHHHHchhcchhHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh-------
Q 003347 684 KKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ------- 746 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~n~~~iv~--------~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~------- 746 (828)
|..|.-.+..+..++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++..|+++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999998877665544432 22333344433 57788999999999999999999998865
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003347 747 ENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.|... .++ .+++..+..-.-.+.|+
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 12222 222 35666666555554443
No 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.21 E-value=0.52 Score=57.97 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
.++.++..+.+....++..|...+..+.+.-+.+-. ..++|.|+..|.+. ..+...-|+.+|..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 467778887777788888888788777664332222 34688999988765 5888899999999997643 2333
Q ss_pred H--HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003347 623 A--NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 623 ~--~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
. -...||.+...+-....+++..|..++..++..-+|+.. ...||.|++.+.++.. .-.++..|..-+...+
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~- 243 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE- 243 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-
Confidence 3 236778888888788899999999999888764343321 3678999999987643 3334444444333222
Q ss_pred HHHHHHhCc----HHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH--HhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 003347 701 KARIVQAGA----VKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI--GQENGIPVLVEVVEL-GSARGKENAAAAL 772 (828)
Q Consensus 701 ~~~iv~~G~----V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i--~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L 772 (828)
+++-. +|.|.+-| +....+..+++-+..|+|.--+....+ .-...+|.|-+.... ..|++|+.|..++
T Consensus 244 ----v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 244 ----VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred ----ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 22333 34444444 456777889999999999822222222 224567777666655 6899999888887
Q ss_pred HHHh
Q 003347 773 LQLC 776 (828)
Q Consensus 773 ~~L~ 776 (828)
-.|-
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 162
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.01 E-value=0.41 Score=51.11 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=110.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC----HHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchH
Q 003347 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA----IEPLIHVLQT-GSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~----l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
.+..|..++ +...+.+.-++-.|.-+..++..-..+.+.+. +..++..+.. +.+..+.-++.+++|+-.++..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 456666666 33334444555555544444444444433222 2233344432 34667889999999998888887
Q ss_pred HHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHH-HHhCcHHHHHHhc--CCChHHHHHHHHHHHHHh
Q 003347 661 IKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKHLVDLM--DPAAGMVDKAVAVLANLA 735 (828)
Q Consensus 661 ~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i-v~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa 735 (828)
..+... .+++.+...+.+.+..++..++++++|++...-..... ....++..+..++ ..+.+..-.++.+|.+|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 776653 55666666666678899999999999998832110000 0112444455555 357788899999999999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHH
Q 003347 736 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAAL 772 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L 772 (828)
..+.....+.+.-++...++-+.+ ..+++.+.|-.+|
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 865555555554344444444433 3566666554443
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.65 E-value=0.53 Score=50.20 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHchhcchhHHHHHH--hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch---hHHHHHhCCcHHH
Q 003347 679 GTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD---GRVAIGQENGIPV 752 (828)
Q Consensus 679 ~~~~~~~~Al~aL~nLs~~~~n~~~iv~--~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e---~r~~i~~~g~I~~ 752 (828)
..+..+..++++++|+-.+...+..+.. ..++..+...+ +.+..++..+..++.|++...- ..+.. ...+..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 3567789999999999998888877665 33555555554 4567777788888899886211 11110 113444
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 003347 753 LVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYF 817 (828)
Q Consensus 753 Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~-g~~r~r~kA~~lL~~L 817 (828)
+..+++. .+.+....+..+|.+|...+++..+.....|+-..+-.+... ..+++.+.|..+|.+|
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 4455543 688999999999999998877666655556666656666655 3578999998888653
No 164
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.02 Score=62.13 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=52.9
Q ss_pred CcccccCccccccCCee-cCCCcc--hhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003347 238 SDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
-.+.|||++..|+.||- ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+...++
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 45899999999999998 679997 9999888876553 346999999999999999887776653
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.48 Score=49.38 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=120.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCc---chHHHHHh-h-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcc------h
Q 003347 631 LIHVLQTGSPEARENAAATLFSLSVIE---DNKIKIGR-S-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH------E 699 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~---e~k~~I~~-~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~------~ 699 (828)
|-.-|.+.++..|..|...|..+.... ........ . ...+.+-..+.+.+..+...|+.+|..++..- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 557788889999999998887654321 11111111 2 34556677888889999999999998876521 1
Q ss_pred hHHHHHHhCcHHHHHH-hc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003347 700 NKARIVQAGAVKHLVD-LM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~-LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
......-..+++.|++ .| +....++..++.+|..++........ .+..++..+.+.+++++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2222334667788886 35 66778888888887766542211111 24555666788999999999999988765
Q ss_pred CCH-Hh--HHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 778 NSS-RF--CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 778 ~~~-~~--~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+ .. ....+ ..+++.|..++.+.++.+|..|..++.-+-.+
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 321 11 11111 12456778888999999999999988766554
No 166
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.24 E-value=1 Score=46.91 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=116.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-cHHHHHHHHcCCCHHHHHHHHHHHHHhhc---CCccHHHH
Q 003347 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG-AINILVDMLHSSETKIQENAVTALLNLSI---NDNNKSAI 622 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~G-aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~---~~~~k~~I 622 (828)
.+...|-+.+...+..|+..|......++ ..++...+ .++.+.--+.+.+..+...++.+|..+.. ....+-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 45566666677778888888887655433 23332222 23333323346788888888888776521 11111111
Q ss_pred HH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003347 623 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.+ .-.+|.|+.-+......+|..+-.+|..+... ......++.+++-+++.+.+.+..++..|..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 24689999999888888998888887766421 112356778888888999999999999998885533221
Q ss_pred HHHHHhCcH---HHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003347 702 ARIVQAGAV---KHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 702 ~~iv~~G~V---~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
....+ +.+..++ +.+..+++.|+.++..+-.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 24467 8889998 7888999999888875543
No 167
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.17 E-value=0.97 Score=48.48 Aligned_cols=200 Identities=15% Similarity=0.142 Sum_probs=147.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCcc
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLH-SSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
.+.+..|+..|..=+.+.+..++.....+.+.....|...++. .--..|..++. .+++++--.+...|.....++..
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4678889999988888999999999888887665443222221 11222222222 24566667777888888788777
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHh---hCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003347 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR---SGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~---~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
...+...+.+..+.+....++-++...|..++..|-. +......... ..++...-.||.+++--+++.++..|..|
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 7778888888999999999999999999999887643 2222222222 15677888899999999999999999999
Q ss_pred hhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH
Q 003347 695 SIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 695 s~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
-.+..|...|.. ..-+..++.+| +....++-+|..+......+|..-
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~ 288 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT 288 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence 999888877665 55778888888 677889999999999888766543
No 168
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.96 E-value=0.17 Score=62.57 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCccHHHHHHc-----C
Q 003347 558 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNLSINDNNKSAIANA-----N 626 (828)
Q Consensus 558 ~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~------s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-----g 626 (828)
..+..|...|..|+..-. ..+.. -.++.+...+. +.+...++.|+.++..++..-.....-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456778888888887543 12211 13344444454 456778899999999987431100000000 1
Q ss_pred CH----HHHHHhhcCC---CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003347 627 AI----EPLIHVLQTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 627 ~l----~~Lv~lL~s~---~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.. ..++..|.++ .+.+|..|+++|..++..- .+.. -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 11 1233345555 7889999999999987642 1111 23567888888888889999999999999987421
Q ss_pred ---------hHHHHH--HhCcHHHHHHhcCCC----hH--HHHHHHHHHHHHhCC--chhHHHHHhCCcHHHHHHHHc--
Q 003347 700 ---------NKARIV--QAGAVKHLVDLMDPA----AG--MVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVVE-- 758 (828)
Q Consensus 700 ---------n~~~iv--~~G~V~~Ll~LL~~~----~~--v~~~Al~~LanLa~~--~e~r~~i~~~g~I~~Lv~lL~-- 758 (828)
.+..+. -..+++.|+.+++.. .. ..+.++.+|..++.. ++... ... ..++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHH
Confidence 122221 144566666666321 11 123444444444331 11111 111 13344444442
Q ss_pred --c-CCHHHHHHHHHHHHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003347 759 --L-GSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 759 --s-~s~~~ke~Av~~L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
+ .++..+..+..+|..++.. +++.... ....+++.+..+++.........+..++..+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2 3556777788888888876 3333332 2345678888888776554555555555444
No 169
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.92 E-value=0.024 Score=50.21 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.7
Q ss_pred CcccccCccc-cccCCee--cCCCcchhHHHHHHHHh
Q 003347 238 SDFCCPLSLE-LMTDPVI--VASGQTYERAFIKKWID 271 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dPV~--~~~G~ty~r~~I~~~~~ 271 (828)
+++.|+||.+ .+.+||. +.|||+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5688999996 5899999 99999999999999544
No 170
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.37 E-value=0.051 Score=58.84 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=53.8
Q ss_pred CCcccccCccccccCCee-cCCCcc--hhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003347 237 PSDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
.-.+.|||+...|+.||- ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 446899999999999998 679988 9999988877654 346999999999999999887777664
No 171
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.35 E-value=0.16 Score=52.50 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003347 750 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL 814 (828)
.+.|..++.+.+..++..++..+. .+.|..| ++.+..+|+.|..-|
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 345666667777777777666531 3556666 777888888876543
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.12 E-value=1.3 Score=54.75 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHH----hcCcHHH----HHHHHcCC---CHHHHHHHHHHHHHhhcCCccHHHH
Q 003347 554 STSLDTQREATAELRLLAKHNMDNRMVIA----NCGAINI----LVDMLHSS---ETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 554 s~~~~~q~~Al~~L~~La~~s~~nr~~i~----~~GaI~~----Lv~lL~s~---d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
+.++..+..|+..+..++.........+. .....+. ++..|.+. ++.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 45666777889999988753210000000 0022233 33445555 8899999999999997542 2221
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------hHHHHHhh--CChHHHHHhhcCCC---HH--HHHH
Q 003347 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED---------NKIKIGRS--GAIGPLVDLLGNGT---PR--GKKD 686 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e---------~k~~I~~~--g~I~~Lv~LL~s~~---~~--~~~~ 686 (828)
-...++.++..|.+.+..++.+|+.+|.+++...+ .+..+... ..++.|+.++.... +. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467788888888889999999999999886422 23333322 56777777777641 11 2345
Q ss_pred HHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-----C-CChHHHHHHHHHHHHHhCC--chhHHHHHhCCcHHHHHHHH
Q 003347 687 AATALFNLSIY-HENKARIVQAGAVKHLVDLM-----D-PAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVV 757 (828)
Q Consensus 687 Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-----~-~~~~v~~~Al~~LanLa~~--~e~r~~i~~~g~I~~Lv~lL 757 (828)
+..+|..++.. .+.... .-..+++.|+..+ + .+..+...++.+|..++.. ++....+ ....+|.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence 55566555431 111111 1122444555444 1 2445556677777777653 2222222 334578888888
Q ss_pred ccCCHHHHHHHHHHHHHHh
Q 003347 758 ELGSARGKENAAAALLQLC 776 (828)
Q Consensus 758 ~s~s~~~ke~Av~~L~~L~ 776 (828)
........+.+..++..+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 7655555666666655554
No 173
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.41 E-value=2 Score=44.28 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHHH
Q 003347 561 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSINDN--NKSAIANANAIEPLIH 633 (828)
Q Consensus 561 ~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d-----~~v~e~A~~aL~nLs~~~~--~k~~I~~~g~l~~Lv~ 633 (828)
..|+..|.-+|. +++.|..+.++...-.|-.+|+..+ +.++-.++.+++.|...++ .-..+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 457777777887 5689999999998888889997643 5577888888888875433 3455667899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--------hCChHHHHHh-hcCCCHHHHHHHHHHHHHchhcchhHHHH
Q 003347 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARI 704 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--------~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~~~~n~~~i 704 (828)
.++.|+.-.+.-|+-++..+-.++..-..+.. ..++..+|.- .+..+++..+..+++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999988887666554333321 1344444443 35668999999999999999999888766
Q ss_pred HH
Q 003347 705 VQ 706 (828)
Q Consensus 705 v~ 706 (828)
..
T Consensus 233 ~~ 234 (268)
T 2fv2_A 233 RQ 234 (268)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.48 E-value=7.9 Score=47.46 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh---c--CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH
Q 003347 638 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---G--NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 712 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~--s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~ 712 (828)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..|+++|..++..-..... .-..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIPPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 456788889988888875322111 12333333332 3 34789999999999998873221111 11235555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhC
Q 003347 713 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 713 Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~ 778 (828)
|+..|+ ..+...|+.++.++|. +.+..+.. ...+..|.+++.. .+...++.+..++..++..
T Consensus 551 l~~~l~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 551 LVRGLN--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhC--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 665553 6678999999999994 33444432 2356666777776 4678999999999888764
No 175
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.84 E-value=11 Score=46.03 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChH
Q 003347 597 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---Q--TGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 670 (828)
Q Consensus 597 ~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL---~--s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 670 (828)
.+...++.|+.+|..++....... ...++.++.++ . .+.+.++..++.+|..++.. ..+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788899999998875422111 13344444433 3 24788999999999988752 1111111 14566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCC--chhHHHHH
Q 003347 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATI--PDGRVAIG 745 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~--~e~r~~i~ 745 (828)
.|+..|. +.++..|+.+|.+|+..-...-.-.-.+++..|..++ . .+......++.++..++.. ++......
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666662 6789999999999986432221112245666666666 3 2455666666666666542 23333322
Q ss_pred h---CCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH----------------HhHHHHHhCCCHHHHHHhhcC--C
Q 003347 746 Q---ENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS----------------RFCSMVLQEGAVPPLVALSQS--G 802 (828)
Q Consensus 746 ~---~g~I~~Lv~lL~s~--s~~~ke~Av~~L~~L~~~~~----------------~~~~~v~~~g~v~~L~~LL~~--g 802 (828)
+ ...+..+..++... ++..+...+..|..|+..-. +.... ....+++.+..++.. .
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~ 705 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVE 705 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccc
Confidence 2 11233333333332 44445555555555543100 00011 123477777777754 3
Q ss_pred CHHHHHHHHHHHHHhh
Q 003347 803 TPRAKEKAQALLSYFR 818 (828)
Q Consensus 803 ~~r~r~kA~~lL~~L~ 818 (828)
++.+.+.|..+++.+.
T Consensus 706 ~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAI 721 (971)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6688888888887654
No 176
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.37 E-value=11 Score=45.89 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=87.2
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh---cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH
Q 003347 636 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 712 (828)
Q Consensus 636 ~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~ 712 (828)
.+.+...++.++.++..++..-... ....++.++..+ .++++.++..++++|..++..-..... .-..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 4557888999999999887632110 012233444333 335788999999999998874221112 22478888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC
Q 003347 713 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 713 Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~ 779 (828)
|+..|+. ..+...|+.+|..+|. +.+..+.. ...+..|..++.. .+...++.+..++..++...
T Consensus 534 l~~~l~~-~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHALGN-PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCC-chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 8888844 7888999999999995 22222221 1234445555554 36788999999998887644
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.74 E-value=13 Score=40.60 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=108.2
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhh
Q 003347 547 KLVEDLKSTS-LDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLS 613 (828)
Q Consensus 547 ~Lv~~L~s~~-~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs 613 (828)
..++.|+++. .+.....+..|+.--+.+ ..--..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3445555442 222234555665333333 22323444 6788999988842 24578888999998887
Q ss_pred cCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--h-HHH----------HHhhCChHHHHHhhcCC
Q 003347 614 INDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED--N-KIK----------IGRSGAIGPLVDLLGNG 679 (828)
Q Consensus 614 ~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~-k~~----------I~~~g~I~~Lv~LL~s~ 679 (828)
.+..+...+... .++..|+..|.+....++..|+..|..++..++ + -.. .++..-+..+++.|+++
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 228 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence 776676666654 789999999999999999999999988877543 2 111 22335688899999874
Q ss_pred -CHHHHHHHHHHHHHchhcch---hH----HHHHHhCcHHHHHHh
Q 003347 680 -TPRGKKDAATALFNLSIYHE---NK----ARIVQAGAVKHLVDL 716 (828)
Q Consensus 680 -~~~~~~~Al~aL~nLs~~~~---n~----~~iv~~G~V~~Ll~L 716 (828)
+.+.+..++..+-.|....+ .| ..+...|..+.+-.+
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 66777666666555544322 22 334567777766654
No 178
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.65 E-value=10 Score=42.57 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=88.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 003347 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 625 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~ 625 (828)
..++... .++...++-|+..|..+.+.-++-... +|..++.++..+|..++.+|+..|-.++.+ ++...
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k---- 100 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR---- 100 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH----
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh----
Confidence 3344433 456888999999999999988776544 788999999999999999999999999988 44333
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..+.|+++|.+.+..-....-.+|..|-..+ ..+.+..|..-+..+++.++..++..|.
T Consensus 101 -iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 -VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3567899999877544333333333332111 1245555555555567777777777664
No 179
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.98 E-value=27 Score=42.51 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=83.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChH
Q 003347 595 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---QTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 670 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL---~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 670 (828)
...+...++.++.+|..++..-... ....++.++..| ..+++.++..++.+|..++.. ..+.. . -..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHH
Confidence 4567888899999999987542110 012344444443 335678999999999888752 11221 1 237888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH--HhCcHHHHHHhcC---CChHHHHHHHHHHHHHhC
Q 003347 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV--QAGAVKHLVDLMD---PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv--~~G~V~~Ll~LL~---~~~~v~~~Al~~LanLa~ 736 (828)
.|+..|.+ +.++..|+.+|.+++..-. ..+. -..++..|..++. -+......++.+++.++.
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 99988865 7899999999999986321 1121 1334445555552 245667777777877776
No 180
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.88 E-value=3 Score=43.43 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=90.1
Q ss_pred cCCCHHHHHHHHHHHHHchhc-chhHHHHH--H-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHh-CCcH
Q 003347 677 GNGTPRGKKDAATALFNLSIY-HENKARIV--Q-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGI 750 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv--~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I 750 (828)
.+.+..+...++.+|..+... .+.-.++. + .-.+|.|++-+ ++...+++.+-.+|..++. +.- ...+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~ 169 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMT 169 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHH
Confidence 366777877777777776331 11101122 1 34778888877 6777888888887777653 111 1246
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003347 751 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV---PPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v---~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.+++-+++.+.+.++.++..|..+-...+-. ...++ +.+..++.+.+..+|..|..++--+-
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67777788999999999999998886543322 23468 99999999999999999998776443
No 181
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.62 E-value=12 Score=40.20 Aligned_cols=201 Identities=10% Similarity=0.056 Sum_probs=140.6
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhh--CChHHHHHhhcCC--CHHHHHHHHHHHHHc
Q 003347 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRS--GAIGPLVDLLGNG--TPRGKKDAATALFNL 694 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~--g~I~~Lv~LL~s~--~~~~~~~Al~aL~nL 694 (828)
..+...+.+..|+..|..=+-+.|..++.+..++-... ..+...++. .- +.++..|-.| ++++-..+-..|...
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34566789999999998889999999998888876532 222111111 11 3333333222 445555555566666
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCC---cHHHHHHHHccCCHHHHHHHH
Q 003347 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN---GIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g---~I~~Lv~lL~s~s~~~ke~Av 769 (828)
..+......++..+.+-.+.+.+ .++-++...|..++.-|-. |..-...+...+ ....+-.+|.+++.-+|..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 66777777788888888888887 4677888899998877655 666666666544 477788899999999999999
Q ss_pred HHHHHHhhCCHH--hHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003347 770 AALLQLCTNSSR--FCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 770 ~~L~~L~~~~~~--~~~~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..|..|-.+... .....+ ...-+..++.||.+....++-.|-.+.+.+...+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999998876442 222222 2334777788888888889999988888887654
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=86.82 E-value=0.5 Score=48.55 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=38.4
Q ss_pred cccccCccccccCCeecC-CCcchhHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 003347 239 DFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 287 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 287 (828)
--.|.||.++..-=+.-+ ||+.|-+.|+.+|++.. ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 345999998877444433 89999999999999864 45799999887654
No 183
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=86.34 E-value=17 Score=36.74 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=88.4
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003347 583 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 650 (828)
Q Consensus 583 ~~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL 650 (828)
..+|+..|+.+|.. .+...+..++.+|..+..+..+...+.. .+++..|+..|.+....++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46788888888753 1356778889999888776666666665 47899999999999999999999888
Q ss_pred HHhccCcc--h-HHHH----------HhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcch---hH----HHHHHhCc
Q 003347 651 FSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE---NK----ARIVQAGA 709 (828)
Q Consensus 651 ~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~---n~----~~iv~~G~ 709 (828)
..++..++ . -..+ .+..-+..+++.|+.. +.+.+..++..+-.|....+ .| ..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88876543 2 2222 2234677788888754 55666555555554544322 22 23445666
Q ss_pred HHHHHHh
Q 003347 710 VKHLVDL 716 (828)
Q Consensus 710 V~~Ll~L 716 (828)
.+.+-.+
T Consensus 201 ~~il~~l 207 (233)
T 2f31_A 201 HQVLQEL 207 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 184
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.00 E-value=11 Score=38.20 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcch--h-HHHHHH---------
Q 003347 640 PEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE--N-KARIVQ--------- 706 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~--n-~~~iv~--------- 706 (828)
......++.+|..+..+...-..+... .++..|+..|.+.++.++..|+..|..+|..++ + ...+++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 456677888888887766655555554 889999999999999999999999999988654 4 444433
Q ss_pred -hCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchh---H----HHHHhCCcHHHHHHHHcc-CCHHHH
Q 003347 707 -AGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDG---R----VAIGQENGIPVLVEVVEL-GSARGK 765 (828)
Q Consensus 707 -~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~---r----~~i~~~g~I~~Lv~lL~s-~s~~~k 765 (828)
......+++.|. ...+....++..+-.+...++. | ..+...| +..+++.++. .++...
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMK 216 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHH
Confidence 235566777773 3345555556555555554432 3 3344444 4455555543 454433
No 185
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=83.69 E-value=6.9 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003347 234 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+..+..+.||+|+.+..+ .-+..||+|+.+-.
T Consensus 133 ~~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 133 IEIKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CCCSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 345677889988776641 23457999997643
No 186
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.49 E-value=2.5 Score=48.29 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+..|++.+....++++..++-.|+.+ ++- -.. -.++++.++.-|.+.|.+|+..|+.+|.-++ .+....
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL--L~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~--- 333 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYL-KEF--VED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD--- 333 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG--CCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH---
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHH-HHH--HHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH---
Confidence 455666666788999999999999888 211 111 1367888888999999999999999998777 221111
Q ss_pred HcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003347 624 NANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
..+..+...|.+. +......-++.|++...... .....+|.|...|++..+.++..++.+|..+.
T Consensus 334 --~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~-----~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--- 403 (800)
T 3oc3_A 334 --LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS-----IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--- 403 (800)
T ss_dssp --HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC-----CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---
T ss_pred --HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc-----cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---
Confidence 1233344444432 22333333444444332100 01277888999999999999999999998887
Q ss_pred hhHHHHHHhCcHHHHHH-h-cCCChHHHHHHHHHHH
Q 003347 699 ENKARIVQAGAVKHLVD-L-MDPAAGMVDKAVAVLA 732 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~-L-L~~~~~v~~~Al~~La 732 (828)
...+++.+.+ + ++++.++.+.+..++.
T Consensus 404 -------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 -------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2234445555 2 3888899998888885
No 187
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.43 E-value=36 Score=42.13 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=127.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc------CC
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI------ND 616 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~------~~ 616 (828)
.+..+++.+.+++.+.|.+|-..|..+.+.. ++...+..+|. +.+..++..|+..|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 4555666666666777888888887775532 45555666664 4588899999999988742 12
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003347 617 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
+.+..| ....+..+...-..+ ...++...+.++..++..+-.. ...+.++.|+.+++ .++..+..++.+|
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 223332 223333333322111 2456666666666665421110 12367888999886 5556677777787
Q ss_pred HHchhcc---------hhH-----HHHHH--hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003347 692 FNLSIYH---------ENK-----ARIVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 692 ~nLs~~~---------~n~-----~~iv~--~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
..|+..- ..+ ..+.. ..++..+..++ ..+..++..++.++......-.. ..+.+...++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 7776411 111 11222 11233333444 24567788888888877663332 224556667776
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhC
Q 003347 754 VEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 754 v~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 64332 3788899999999888865
No 188
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=81.97 E-value=22 Score=38.79 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=89.3
Q ss_pred cCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 625 ANAIEPLIHVLQT-----------GSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 625 ~g~l~~Lv~lL~s-----------~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.+|+..|+.+|.. .+......++.+|..+..+......+... .+|..|+..|.+..+.+++.|+..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5778888888741 12456778889999887766665555554 88999999999999999999999999
Q ss_pred Hchhcch--h-HHHHHH----------hCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCch---hH----HHHHhCCcH
Q 003347 693 NLSIYHE--N-KARIVQ----------AGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPD---GR----VAIGQENGI 750 (828)
Q Consensus 693 nLs~~~~--n-~~~iv~----------~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e---~r----~~i~~~g~I 750 (828)
.+|..++ + ...+++ ......++..|. ...+....++..+-.+...++ .| ..+...|.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl- 266 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL- 266 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH-
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh-
Confidence 9998653 3 444433 235677888884 344555555655555555433 23 33344444
Q ss_pred HHHHHHHcc
Q 003347 751 PVLVEVVEL 759 (828)
Q Consensus 751 ~~Lv~lL~s 759 (828)
..+++.++.
T Consensus 267 ~~il~~lr~ 275 (383)
T 3eg5_B 267 HQVLQELRE 275 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 444445654
No 189
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=81.40 E-value=0.93 Score=39.48 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=44.9
Q ss_pred CCCCCCC-cccccCccccccCCeecC-CCc-----chhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003347 232 SPVPIPS-DFCCPLSLELMTDPVIVA-SGQ-----TYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 232 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G~-----ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
..+.-|+ .+.|||++++.+.=|.+. ++. -||..++.+-...| ..=|.+|+|++...++
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASIIV 83 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTTEE
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhhEe
Confidence 3455554 689999999999999863 222 39999999999887 4579999999887654
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.56 E-value=40 Score=36.83 Aligned_cols=134 Identities=18% Similarity=0.253 Sum_probs=90.4
Q ss_pred cCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 584 CGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLF 651 (828)
Q Consensus 584 ~GaI~~Lv~lL~s-----------~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~ 651 (828)
.+|+..|+.+|.. .+...+..++.+|..+..+..+...+... +++..|+..|.+....++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5788888887742 14567788899998887776666666654 78999999999888999988988888
Q ss_pred HhccCcc--h-HHHH----------HhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcch---h----HHHHHHhCcH
Q 003347 652 SLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE---N----KARIVQAGAV 710 (828)
Q Consensus 652 nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~---n----~~~iv~~G~V 710 (828)
.++..++ . -..+ .+..-+..+|+.|..+ +.+.+..++..+-.|....+ . +..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8777543 2 1111 2235677899988754 56666666655555544332 2 2345567777
Q ss_pred HHHHHhc
Q 003347 711 KHLVDLM 717 (828)
Q Consensus 711 ~~Ll~LL 717 (828)
+.|-.+-
T Consensus 206 ~il~~Lr 212 (386)
T 2bnx_A 206 QVLQELR 212 (386)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7765553
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.37 E-value=8.9 Score=43.01 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH
Q 003347 678 NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV 756 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l 756 (828)
.++...++.|+..|.....+-.. ....++..+++|+ +.+..++..|+.-|..+|.. +.... ++..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHH
Confidence 34688888888888876553332 3455677888988 57778888999999999987 44332 45688899
Q ss_pred HccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003347 757 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 757 L~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
|.+.++......-.+|..|...++. +.+..|+.-+..+++.+|+++...|+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 9988888888888888888877763 44556666666677888887776553
No 192
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.21 E-value=51 Score=40.83 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=131.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-----C
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-----D 616 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~-----~ 616 (828)
..+..++..+.+++.+.|.+|-..|..+-+.. ++...+..+|. +.++.++-.|+.+|.+.... +
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34666777676666667778888887775532 34445555554 45789999999999886421 2
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003347 617 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
......+....+..+......+ ...++...+.+|..++..+-.. .....++.|+.+++.+ +.....++..|
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~iL 161 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 2222333344455555443222 2334444556666554321100 1247788888888654 44566667777
Q ss_pred HHchhc---------chhHHHH-----HH--hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003347 692 FNLSIY---------HENKARI-----VQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 692 ~nLs~~---------~~n~~~i-----v~--~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
..|+.. ...+..- .. ..++..+..+| ..+..++..++.+|......-. -..+.+.+.++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHH
Confidence 665442 1122211 11 22334444444 3456778888999888877433 3456677888998
Q ss_pred H-HHHccCCHHHHHHHHHHHHHHhh
Q 003347 754 V-EVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 754 v-~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
. .++. ++..++.|+.+|..+..
T Consensus 241 ~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHc
Confidence 8 7774 67899999999999987
No 193
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=78.72 E-value=1.8 Score=44.55 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHH
Q 003347 588 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 648 (828)
Q Consensus 588 ~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~ 648 (828)
+.|..++.++++.|+..++..| . .+.|..+++.++..++..++.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 5667777888888887777642 1 112444556666666666665
No 194
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.54 E-value=32 Score=34.95 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=108.8
Q ss_pred hhhhhHHHHHHHHhcC---CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 003347 539 SGIETQVRKLVEDLKS---TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 615 (828)
Q Consensus 539 ~~~~~~V~~Lv~~L~s---~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~ 615 (828)
+.|+..|..|++.+.. +..++...|...+..+. .+ ..++....+..++..+++..|+.+|..+ .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~---~~--------~~~~la~~L~~~~~deVR~~Av~lLg~~-~- 99 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND---GE--------YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S- 99 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC---HH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-
T ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC---HH--------HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-
Confidence 3467888888887763 33333333333332322 11 2334445566777788999999988777 2
Q ss_pred CccHHHHHHcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003347 616 DNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 616 ~~~k~~I~~~g~l~~Lv~-lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
. ....++.+.. +-...+..+++.++.++..++. .+ -...++.+...+++++..+++.|...+.-
T Consensus 100 ~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~-------pe~~l~~~~~W~~d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 100 K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE-------YKKALPIIDEWLKSSNLHTRRAATEGLRI 165 (240)
T ss_dssp T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC-------TTTTHHHHHHHHHCSSHHHHHHHHHHTCS
T ss_pred C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHhcCCCHHHHHHHHHhhHH
Confidence 1 1234555555 4456678999999988887753 11 11367889999999999999999988754
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHh
Q 003347 694 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ 746 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~ 746 (828)
-+.-.. .+.--.-+++.|-.+. +++.-++......|..++. +|+-...+++
T Consensus 166 W~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 166 WTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp GGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 332110 0000112444444455 5666677777889999998 6666666554
No 195
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=75.86 E-value=97 Score=38.11 Aligned_cols=207 Identities=11% Similarity=0.064 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC---CHHHHHHHHHHHHHhhc--CCc----cHHHHHHcC
Q 003347 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS---ETKIQENAVTALLNLSI--NDN----NKSAIANAN 626 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~---d~~v~e~A~~aL~nLs~--~~~----~k~~I~~~g 626 (828)
+++.|.+|-..|..+-+. + ++......+|... ++.++-.|+.+|.+... .++ .+..+ ...
T Consensus 21 d~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHH
Confidence 688888888888887653 2 3455566667553 68899999988877532 333 23222 223
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCH-HHHHHHHHHHHHchhc-------
Q 003347 627 AIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSIY------- 697 (828)
Q Consensus 627 ~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~-~~~~~Al~aL~nLs~~------- 697 (828)
.+..+...-. .+...++...+.+|..+...+.. -....+++.|+.+++.++. .+....+++|..|+..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~ 166 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL 166 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence 3444433110 22455666777777666532100 0123678888888876543 3444555555544331
Q ss_pred --ch--h-----HHHHHHh---CcHHHHHHhc-----CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC
Q 003347 698 --HE--N-----KARIVQA---GAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 760 (828)
Q Consensus 698 --~~--n-----~~~iv~~---G~V~~Ll~LL-----~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~ 760 (828)
.+ . +..+.+. -+++.++.+| ..+..++..++.+|......-. -..+.+.+.++.+..++..
T Consensus 167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~- 244 (980)
T 3ibv_A 167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI- 244 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS-
T ss_pred cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC-
Confidence 00 1 1222221 1133334444 2566778888888888777433 3455566678888888854
Q ss_pred CHHHHHHHHHHHHHHhhCC
Q 003347 761 SARGKENAAAALLQLCTNS 779 (828)
Q Consensus 761 s~~~ke~Av~~L~~L~~~~ 779 (828)
+..++.|+.+|..+....
T Consensus 245 -~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 245 -EELRCAACETMTEIVNKK 262 (980)
T ss_dssp -HHHHHHHHHHHHHHHHSC
T ss_pred -hHHHHHHHHHHHHHHHcC
Confidence 899999999999998865
No 196
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.88 E-value=63 Score=40.18 Aligned_cols=219 Identities=14% Similarity=0.030 Sum_probs=132.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC-----C
Q 003347 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-----D 616 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~-----~ 616 (828)
..+..++..+.+++.+.|.+|-..|..+-+ ++ ++...+..+|.. .++.++-.|+.+|.+.... +
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 456778888888888877788888877654 33 344455555544 5889999999999887431 2
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003347 617 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
.....-+....+..+...-..+ +..++...+.++..++..+-.. ....+++.|+.+++. ++......+..|
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 2222333334555555543322 3455555566666554321000 023667778877753 445666777777
Q ss_pred HHchhc--c-------hhH-----HHHHH--hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003347 692 FNLSIY--H-------ENK-----ARIVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 692 ~nLs~~--~-------~n~-----~~iv~--~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
..|+.. . ..+ ..+.. ..+++.+..+| ..+..++..++.+|......-+. ..+.+.+.++.|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHH
Confidence 777652 1 011 11222 12333333344 35677888899999998885432 356777778877
Q ss_pred H-HHHccCCHHHHHHHHHHHHHHhhC
Q 003347 754 V-EVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 754 v-~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+ .++ .++..+..|+.+|..+...
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--CChHHHHHHHHHHHHHHhc
Confidence 4 555 5788999999999998875
No 197
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=74.87 E-value=25 Score=38.38 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcch--h-HHHHHH---------
Q 003347 640 PEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE--N-KARIVQ--------- 706 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~--n-~~~iv~--------- 706 (828)
......++.+|..|..+...-..+... .++..|+..|.+..+.++..++..|..+|..++ + ...+++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 456677888888887766555555554 889999999998899999999999998988654 3 333332
Q ss_pred -hCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchh---H----HHHHhCCcHHHHHHHHcc-CCHHH
Q 003347 707 -AGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDG---R----VAIGQENGIPVLVEVVEL-GSARG 764 (828)
Q Consensus 707 -~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~---r----~~i~~~g~I~~Lv~lL~s-~s~~~ 764 (828)
......|++.+. ...+....++..+-.|...++. | ..+...| +..+++.++. .++..
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDM 219 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChhH
Confidence 235556777773 3445555566666555554432 3 3444444 4445555554 45443
No 198
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.77 E-value=38 Score=41.86 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=97.3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc----CCccHHHHHH--cCCHHHHHHhhcCC-------------------C
Q 003347 585 GAINILVDMLHSSETKIQENAVTALLNLSI----NDNNKSAIAN--ANAIEPLIHVLQTG-------------------S 639 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~----~~~~k~~I~~--~g~l~~Lv~lL~s~-------------------~ 639 (828)
.+++.++.+...++.++...++..+..++. .+..+..+.. ...++.++..+.-+ +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 456677776666777777777766666644 2211111110 12233333333211 1
Q ss_pred H---HHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC--CCHHHHHHHHHHHHHchhcch-hHHHHHHhCcHHHH
Q 003347 640 P---EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN--GTPRGKKDAATALFNLSIYHE-NKARIVQAGAVKHL 713 (828)
Q Consensus 640 ~---e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s--~~~~~~~~Al~aL~nLs~~~~-n~~~iv~~G~V~~L 713 (828)
. ..+..+..+|..++..... .+ -.-.++.|-..+.. .+.+.+..|+.++..++..-. ....-.-..+++.|
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~--~~-l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVI--DT-EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--HH-HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHH--HH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 0 2233455566666521111 00 01112333334432 367889999999999876321 11111223355555
Q ss_pred HHhcC---C--ChHHHH-HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003347 714 VDLMD---P--AAGMVD-KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 714 l~LL~---~--~~~v~~-~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+.+.. . ...++. .+++++...+..-....... ...++.|++.+.+.++.++..|+.++.++|..
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 55432 1 122333 46677776554211111111 13567777777778899999999999999985
No 199
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=71.10 E-value=69 Score=34.43 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=85.2
Q ss_pred HHchh-cchhHHHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHH
Q 003347 692 FNLSI-YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENA 768 (828)
Q Consensus 692 ~nLs~-~~~n~~~iv~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A 768 (828)
.||.. +.+...-+++..+|..+..++. ++.+++...+.+|...+....-+.. --...+|.++..++ ++++.+....
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~eDdvvYSG 345 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPDDEVIYSG 345 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCCcceEEec
Confidence 34444 4555677999999999999884 7888999999999887754322111 01346888888885 6889999999
Q ss_pred HHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003347 769 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 769 v~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
.+.|.|+..+.....+..+..|+++.|...+..-
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 9999999999987888888999999999887654
No 200
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=69.93 E-value=58 Score=34.32 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=96.8
Q ss_pred ChHHHHHhhcCC------CHHHHHHHHHHHHHchhcchhHHHHHH--hCcHHHHHHhcCCChHHHHHHHHHHHHHhC-Cc
Q 003347 668 AIGPLVDLLGNG------TPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IP 738 (828)
Q Consensus 668 ~I~~Lv~LL~s~------~~~~~~~Al~aL~nLs~~~~n~~~iv~--~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~ 738 (828)
.+..+..+++++ +......|+-.|.-++-+-..-.+|++ ...+..|+-.......+.+.|..+++.-.. +|
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 345566667666 334566778888888877666667775 334444431113445678899999887777 66
Q ss_pred hhHHHHHh--CCcHHHHHHHHcc-------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHH
Q 003347 739 DGRVAIGQ--ENGIPVLVEVVEL-------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAK 807 (828)
Q Consensus 739 e~r~~i~~--~g~I~~Lv~lL~s-------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r 807 (828)
.....|.+ ...+..+..-|.. .....+..-+++|..|....... ...++..|..++..+ ++.+|
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHH
Confidence 66776665 3446555544432 35566777788888888775322 145778888888877 89999
Q ss_pred HHHHHHHHHhhc
Q 003347 808 EKAQALLSYFRN 819 (828)
Q Consensus 808 ~kA~~lL~~L~~ 819 (828)
.++..++..+-.
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999998876653
No 201
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.62 E-value=1e+02 Score=38.87 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=120.9
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhc----
Q 003347 543 TQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSI---- 614 (828)
Q Consensus 543 ~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL--~s~d~~v~e~A~~aL~nLs~---- 614 (828)
..+..+++.+.++ +.+.|.+|-..|..+.+.. ++...+...| .+.+..++..|+..|.|...
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555444 6667888888887775532 2334444434 34578899999999988742
Q ss_pred --CCccHHHHHHcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHH
Q 003347 615 --NDNNKSAIANANAIEPLIHVLQT---GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 689 (828)
Q Consensus 615 --~~~~k~~I~~~g~l~~Lv~lL~s---~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~ 689 (828)
.++.+..| ....+..+...-.. ....++...+.++..++..+-.. ....+++.|+.++++ +...+..++.
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~ 155 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMF 155 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHH
Confidence 22223333 33334444332111 34667777777777775432110 023778888888876 4556777888
Q ss_pred HHHHchhc-------chhHHH----HHHh---CcHHHHHHhcCC--------------------ChHHHHHHHHHHHHHh
Q 003347 690 ALFNLSIY-------HENKAR----IVQA---GAVKHLVDLMDP--------------------AAGMVDKAVAVLANLA 735 (828)
Q Consensus 690 aL~nLs~~-------~~n~~~----iv~~---G~V~~Ll~LL~~--------------------~~~v~~~Al~~LanLa 735 (828)
+|..|+.. ...+.. .+.. .+++.+..++.. ...++..++.++.+..
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 88888652 111211 1111 222233333311 1224455556555544
Q ss_pred CCchhHHHHHhCC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003347 736 TIPDGRVAIGQEN--GIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 736 ~~~e~r~~i~~~g--~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
..... ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 236 ~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 236 DWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred hccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 43222 2333433 5666665554 5778999999999999865
No 202
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=69.58 E-value=66 Score=39.59 Aligned_cols=269 Identities=12% Similarity=0.026 Sum_probs=138.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccHHHHHH
Q 003347 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNKSAIAN 624 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~---~~~k~~I~~ 624 (828)
|.....+.++.....++.+|.....-- .-..++..+.++.+..+|.. ++++..|+.+|..+... ++.+..++.
T Consensus 198 L~~~~~~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 198 MLAYSNAKNYGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 333334467888889999998887632 23456667888899988864 88999999999887432 233433333
Q ss_pred cCCHHHHHHhhc--CCCHHHHHHHHHHHHHhc------c-Cc-----chHHHH-Hh-hCChHHHHHhhcCCCHHHHHHHH
Q 003347 625 ANAIEPLIHVLQ--TGSPEARENAAATLFSLS------V-IE-----DNKIKI-GR-SGAIGPLVDLLGNGTPRGKKDAA 688 (828)
Q Consensus 625 ~g~l~~Lv~lL~--s~~~e~~~~Aa~aL~nLS------~-~~-----e~k~~I-~~-~g~I~~Lv~LL~s~~~~~~~~Al 688 (828)
.=.+..++..+. ..+.+..+..+..+..+. . .+ +.+... .. .+.++.++.++.+++.++...++
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~ 353 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 311223333332 355565544333332221 1 11 111111 12 27888889999888888777777
Q ss_pred HHHHHchhcchh-------HHH--HHHhCcHHHHHHhc--CCC----h-----------HHHHHHHHHHHHHhC--Cchh
Q 003347 689 TALFNLSIYHEN-------KAR--IVQAGAVKHLVDLM--DPA----A-----------GMVDKAVAVLANLAT--IPDG 740 (828)
Q Consensus 689 ~aL~nLs~~~~n-------~~~--iv~~G~V~~Ll~LL--~~~----~-----------~v~~~Al~~LanLa~--~~e~ 740 (828)
..+..+...... ... -+-..+++.++.-+ .++ . +.+. .+++|...+. .++-
T Consensus 354 ~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk-~l~~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRK-KLKIFQDTINSIDSSL 432 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHH-HHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHH-HHHHHHHHHHhcChHH
Confidence 766655432111 010 11122333333333 111 0 1122 2223322222 1111
Q ss_pred HHHHHhCCcH-HHHHHHHc---cCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-----CCCHHHHHHhhc-----CCCHHH
Q 003347 741 RVAIGQENGI-PVLVEVVE---LGSARGKENAAAALLQLCTNSSRFCSMVLQ-----EGAVPPLVALSQ-----SGTPRA 806 (828)
Q Consensus 741 r~~i~~~g~I-~~Lv~lL~---s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-----~g~v~~L~~LL~-----~g~~r~ 806 (828)
.-..+ ...+ +.+.+.+. +.+....|.|+.+|.+++.+-......+.. ...++.|..++. ..++++
T Consensus 433 ~l~~~-~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V 511 (980)
T 3ibv_A 433 FSSYM-YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV 511 (980)
T ss_dssp HHHHH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred HHHHH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence 11100 0011 12222232 245788999999999987753211111000 113455555655 567999
Q ss_pred HHHHHHHHHHhhcccc
Q 003347 807 KEKAQALLSYFRNQRH 822 (828)
Q Consensus 807 r~kA~~lL~~L~~~~~ 822 (828)
+..+.+++.....+-.
T Consensus 512 ~~~~~~~l~rys~~~~ 527 (980)
T 3ibv_A 512 QLLYMEILVRYASFFD 527 (980)
T ss_dssp HHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988777643
No 203
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.08 E-value=12 Score=35.79 Aligned_cols=73 Identities=7% Similarity=0.079 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 613 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs 613 (828)
.+..+..|.+.|++.++.+|..|+..|-.+.+. .......++...++.-|+.++.. .++.|++.++..|...+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999886 34455667777888889888875 57899999998887664
No 204
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.91 E-value=8.2 Score=32.91 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=37.2
Q ss_pred cccccCcccc-----ccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 239 DFCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.-.|.||++= =-+|.+. .|+...||.|.+-=..+++..||.|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3579999863 1235454 4899999999998888898899999988764
No 205
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=68.51 E-value=19 Score=44.61 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcC-----CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHH
Q 003347 638 GSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGN-----GTPRGKKDAATALFNLSIYHENKARIVQAGAVK 711 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s-----~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~ 711 (828)
.+...++.++.++.+++..... ...-.-..+++.|+.++.. ....++..++++|...+..-...... =..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 5789999999999999874332 2222223667888888863 12334456667877776633222222 134455
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHh------CCcHHHHHH----HHccCCHHHHHHHHHHHHHHhhCC
Q 003347 712 HLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ------ENGIPVLVE----VVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 712 ~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~------~g~I~~Lv~----lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.|++.+ ++.+.+.+.|+.++.+||. +.+..+.. ...++.++. .+..-++.....+..++..+...-
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 555555 4567899999999999996 34444432 123444433 334456777777777777777654
No 206
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.23 E-value=14 Score=34.75 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 613 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s------~d~~v~e~A~~aL~nLs 613 (828)
.+..+..|.+.|++.++.+|..|+..|-.+.+. .......++...++.-|+.++.. .++.|++.++..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999886 34566777777899999998863 47899999999887765
No 207
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.91 E-value=14 Score=34.39 Aligned_cols=72 Identities=8% Similarity=0.105 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+..+..|.+.|++.++.+|..|+..|-.+.+.. ......++...++.-|+.++...++.|+...+..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999998888853 334455666678888888887788999999999887765
No 208
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=63.84 E-value=66 Score=32.67 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhc--CCccHH
Q 003347 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSI--NDNNKS 620 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~-lL~s~d~~v~e~A~~aL~nLs~--~~~~k~ 620 (828)
.+.....+.+++..++|..|+..|..+ ... ...++.+.. +-..++-.|++.+..++..++. +++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 344444444566778888898877766 211 124556665 4455788999999999988763 332
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-ch
Q 003347 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~-~~ 699 (828)
..++.+...+.+++..+|..|+..+.--+.....+ .--.-+++.|-.+..+.+.-+++..+++|..++.. ++
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 26778888999999999998887654211111100 00012456666667777889999999999999884 44
Q ss_pred hHHHHHH
Q 003347 700 NKARIVQ 706 (828)
Q Consensus 700 n~~~iv~ 706 (828)
-...+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333433
No 209
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.05 E-value=15 Score=35.39 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 613 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s------~d~~v~e~A~~aL~nLs 613 (828)
.+..+..|.+.|++.++.+|..|+..|-.+.+.. ......++...++.-|+.++.. .+..|++.++..|...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999998863 4456667777899999999862 36889999999987775
No 210
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=59.55 E-value=1.7e+02 Score=31.47 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=91.9
Q ss_pred HHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHH
Q 003347 650 LFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDK 726 (828)
Q Consensus 650 L~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~ 726 (828)
|.+|-.++.+. .-++...++..+..+++-.+..+.+..+..|...+....-+..- -...+|.++..+ +++.+++-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEEe
Confidence 34555555553 44667788999999999999999999999998876654432211 145677888877 788899999
Q ss_pred HHHHHHHHhCCchhHHHH-HhCCcHHHHHHHHcc-------CCHHHHHHHHHHHHHHh
Q 003347 727 AVAVLANLATIPDGRVAI-GQENGIPVLVEVVEL-------GSARGKENAAAALLQLC 776 (828)
Q Consensus 727 Al~~LanLa~~~e~r~~i-~~~g~I~~Lv~lL~s-------~s~~~ke~Av~~L~~L~ 776 (828)
..+.|.|...+..-...+ +..|+|+.|-..+.. .+..-+..||+++.|--
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 999999999987665544 668889999887743 34556777888877643
No 211
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.37 E-value=27 Score=32.86 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 003347 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 613 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s------~d~~v~e~A~~aL~nLs 613 (828)
-+..+..|.+.|++.++.+|..|+..|-.+.+.. ......++...++.-|+.++.. .++.|++..+..|...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999988854 3345667777899999999863 57889999999987775
No 212
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.57 E-value=21 Score=34.05 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=56.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~-g~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.++++.++..|..+|-.+..+.+ .....+.....+..|+.++.. .++.+++++..++..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999888854 455566666778888888875 4578999999988765543
No 213
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=57.13 E-value=1.4e+02 Score=37.15 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=123.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccC-----cch
Q 003347 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVI-----EDN 659 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~-----~e~ 659 (828)
.+..++..+.++++..+..|-..|..+-.++ ++...+..+|.. .+..+|..|+.+|.+.... +..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 4555666666677777788888887765444 334444455544 4789999999999886542 222
Q ss_pred HHHHHhhCChHHHHHhhcC-----CCHHHHHHHHHHHHHchhc--chhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHH
Q 003347 660 KIKIGRSGAIGPLVDLLGN-----GTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA 732 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s-----~~~~~~~~Al~aL~nLs~~--~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~La 732 (828)
...-.+...+..+...-.. .++.++...+.++..+... ++. + .+.++-|+.++..+...++..+.+|.
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-W----p~fi~dLv~~~~~~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-W----PTFISDIVGASRTSESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-C----TTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-c----cHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2222233444444443322 2345555555666666442 111 1 34666677766444556677778887
Q ss_pred HHhCC--c-------hh-----HHHHHhC--CcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHH
Q 003347 733 NLATI--P-------DG-----RVAIGQE--NGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795 (828)
Q Consensus 733 nLa~~--~-------e~-----r~~i~~~--g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L 795 (828)
.|+.. . .. +..+.+. ..+..+..++. ..++.....+..+|..+..--+ ...+++.+.++.|
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHH
Confidence 77652 1 01 2233332 12333444443 3567777777788877766432 2456677778877
Q ss_pred -HHhhcCCCHHHHHHHHHHHHHhhc
Q 003347 796 -VALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 796 -~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..++ +.+..+..|..+|..+-.
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CChHHHHHHHHHHHHHHh
Confidence 4555 467889999998776644
No 214
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=56.01 E-value=65 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.0
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
...+.|++|+.++. | .-+..||+|+.+-
T Consensus 169 ~~~~~C~~CG~i~~-------g-------------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 169 DKFHLCPICGYIHK-------G-------------EDFEKCPICFRPK 196 (202)
T ss_dssp CCEEECSSSCCEEE-------S-------------SCCSBCTTTCCBG
T ss_pred CcEEEECCCCCEEc-------C-------------cCCCCCCCCCCCh
Confidence 45788998877654 1 1225799999763
No 215
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=54.27 E-value=1.1e+02 Score=32.23 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=96.5
Q ss_pred HHHHHHhhcCC------CHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003347 628 IEPLIHVLQTG------SPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 628 l~~Lv~lL~s~------~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
+..+..++++| +.+..+.|+..|..+|-+.++-..|... ..+..|+ +.....+.+++.|+++|..-..++.
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44556667766 3456788899999998887777777763 4455555 2334567889999999988777544
Q ss_pred -hHHHHHH--hCcHHHHHHhc----C----CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC--CHHHHH
Q 003347 700 -NKARIVQ--AGAVKHLVDLM----D----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKE 766 (828)
Q Consensus 700 -n~~~iv~--~G~V~~Ll~LL----~----~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke 766 (828)
....+.+ ...|..++.-| . ....++..-+++|--|..++. .+. ..++..|.+++... .+.+|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCHHHHH
Confidence 4444443 34555554433 1 234566778899999988762 121 34667777777666 889999
Q ss_pred HHHHHHHHHhh
Q 003347 767 NAAAALLQLCT 777 (828)
Q Consensus 767 ~Av~~L~~L~~ 777 (828)
.+..++..+-.
T Consensus 179 Kvl~li~d~f~ 189 (315)
T 3qml_C 179 KVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99888877663
No 216
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=53.08 E-value=23 Score=33.22 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=57.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~------g~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.++++.++..|..+|-.+..+.+ .....+.....+..|+.++.. .+..+++++..++..-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999988854 455677677888889998874 2578999998888765543
No 217
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.04 E-value=19 Score=33.47 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=56.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+..|..++...++.+++++..++......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999998888887654 444555556777788888777889999999988865543
No 218
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.99 E-value=4.4 Score=27.04 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=12.6
Q ss_pred CCcccccCccccccCC
Q 003347 237 PSDFCCPLSLELMTDP 252 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP 252 (828)
|..|.||+|...|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4678899998887776
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.80 E-value=31 Score=34.76 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs 613 (828)
+..+..|.+.|++.++.+|..|+..|-.+.+.. ......|+...++..|+.++.. .++.|++.++..|...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999988853 2345666667888888888864 57889999999888775
No 220
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.15 E-value=22 Score=34.27 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=56.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~------g~~r~r~kA~~lL~~L~~ 819 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+..|+.++.. .+..+++++..++..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 367788889999999999999999999998764 44566667788889998863 247899999998876554
No 221
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=47.95 E-value=92 Score=38.65 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=58.0
Q ss_pred ChHHHHHhhcCC----CHHHHHHHHHHHHHchh----cchhHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHH
Q 003347 668 AIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 668 ~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~----~~~n~~~iv~~G~V~~Ll~LL-----~~~~~v~~~Al~~LanL 734 (828)
.+..+..|+.+. ++.++..|+.++.+|.. +... +....|+.+.++| ..+..-...++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 456666777653 45666667777766643 2221 1223345555544 34445566788888887
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHcc-------CCHHHHHHHHHHHHHHhhCCH
Q 003347 735 ATIPDGRVAIGQENGIPVLVEVVEL-------GSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 735 a~~~e~r~~i~~~g~I~~Lv~lL~s-------~s~~~ke~Av~~L~~L~~~~~ 780 (828)
... ..++.|..++.. ...+++..|+++|..+....+
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP 510 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch
Confidence 652 245666666531 245677778888888876654
No 222
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.56 E-value=5 Score=28.06 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=12.0
Q ss_pred CcccccCccccccCCe
Q 003347 238 SDFCCPLSLELMTDPV 253 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV 253 (828)
+-|.||||..-+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4589999988776653
No 223
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.73 E-value=7.1 Score=29.25 Aligned_cols=13 Identities=38% Similarity=1.157 Sum_probs=11.5
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999984
No 224
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.15 E-value=14 Score=33.16 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=38.2
Q ss_pred CCcccccCccccccC-CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 237 PSDFCCPLSLELMTD-PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~d-PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
|+-|.|..|...+.+ +.....|..||+.+-.+- ....|+.|++++...
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCTT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCcC
Confidence 567999999988876 666789999999986543 346799999988753
No 225
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.15 E-value=3.4e+02 Score=29.40 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL 612 (828)
.++++.++++....+.++|+..+..|...++...+.- ..+++.|..+|.++++.+...++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4677788877777788888888888877766544432 13566777777777787777777776655
No 226
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=43.15 E-value=2.6e+02 Score=35.12 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcc------CcchHHHHHhhCCh
Q 003347 598 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSV------IEDNKIKIGRSGAI 669 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL--~s~~~e~~~~Aa~aL~nLS~------~~e~k~~I~~~g~I 669 (828)
+...+..|-..|.++..++ .+...+...| .+.+..+|..|+.+|.+... .++.|..| +...+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHH
Confidence 6677888888887663322 2444444444 34468899999999988642 22233333 33334
Q ss_pred HHHHHhhcC---CCHHHHHHHHHHHHHchhcc-hhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 003347 670 GPLVDLLGN---GTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 670 ~~Lv~LL~s---~~~~~~~~Al~aL~nLs~~~-~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~ 736 (828)
..+...-.. ....++...+.++..++... ...+ .+.++.|+.++..+...++.++.+|..|+.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 444333211 34667777777887776531 1222 467788888885566667778888888864
No 227
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.23 E-value=48 Score=33.02 Aligned_cols=72 Identities=7% Similarity=0.102 Sum_probs=58.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs 613 (828)
+..+..|.+.|++.++.+|..|+..|-.+.+.. ...+..++...++..|+.++.. .+..|++.++..+...+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998864 3355667767788888888864 46888888888877664
No 228
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.05 E-value=38 Score=31.85 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=57.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~------g~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.+.++.++..|..+|-.+..+.+. ....+.....+.-|+.++.. ..+.+++++..++......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999887754 44566666788889988863 3578999999988866543
No 229
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=39.41 E-value=50 Score=30.70 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=51.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhC-CCHHHHHHhhcC-----CC---HHHHHHHHHHHHHhh
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQE-GAVPPLVALSQS-----GT---PRAKEKAQALLSYFR 818 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~-g~v~~L~~LL~~-----g~---~r~r~kA~~lL~~L~ 818 (828)
++..|.+-|...++.++..|..+|-.||.++.. .+..+.+. ..|..|...-.. |+ ..+|.+|.+++.+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 456788888889999999999999999987654 44444432 223333322211 22 579999999999998
Q ss_pred cccc
Q 003347 819 NQRH 822 (828)
Q Consensus 819 ~~~~ 822 (828)
....
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 7643
No 230
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=38.24 E-value=11 Score=28.97 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 231
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.23 E-value=9.6 Score=29.55 Aligned_cols=13 Identities=46% Similarity=0.938 Sum_probs=11.7
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999985
No 232
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.75 E-value=78 Score=29.79 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHH-HHHHHcC---CCHHHHHHHHHHHHHhh
Q 003347 541 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHN-MDNRMVIANCGAINI-LVDMLHS---SETKIQENAVTALLNLS 613 (828)
Q Consensus 541 ~~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~-Lv~lL~s---~d~~v~e~A~~aL~nLs 613 (828)
.+..+..|.+.|+ ..++.+|..|+..|-.+.+.. ......++...++.- |+.++.. ....|++.++..+...+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3678899999998 589999999999999998864 555666777788887 7888842 34688888888887664
No 233
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.59 E-value=59 Score=32.35 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=56.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+..|..++... ...+++++..++..-...
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 466778888899999999999999999998764 445666666777888887654 478999998888765543
No 234
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.50 E-value=54 Score=32.92 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=55.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|.+.++.++..|+.+|-.+..+.+. ....+.....+..|..++... ...+++++..++......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999998887553 455665666777777777654 468999999988876554
No 235
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.67 E-value=13 Score=28.62 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=11.7
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 236
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.53 E-value=14 Score=31.17 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=11.8
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 237
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.80 E-value=13 Score=28.90 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4899999999985
No 238
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.50 E-value=4.1e+02 Score=26.96 Aligned_cols=161 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh--------h
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL--------S 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL--------s 613 (828)
.++++.++.+....+.++|+..+..|...++..++.-... ++.|..+|..+++.+...++.+..++ +
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cCCc-----cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-------------------------HHH
Q 003347 614 INDN-----NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------IKI 663 (828)
Q Consensus 614 ~~~~-----~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-------------------------~~I 663 (828)
.++. ....-.-...=..++.++.+++..++..++..+-.+....... ..+
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~L 206 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKL 206 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHH
Q ss_pred Hhh--CChHHHHHhhcCC--CHHHHHHHHHHHHHchh-cchhHHHHHHh
Q 003347 664 GRS--GAIGPLVDLLGNG--TPRGKKDAATALFNLSI-YHENKARIVQA 707 (828)
Q Consensus 664 ~~~--g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~-~~~n~~~iv~~ 707 (828)
-.. +.+..|+.++.+. +......++.+|..|+. -+..-.+++.+
T Consensus 207 e~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 207 QEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHh
No 239
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=32.00 E-value=63 Score=28.07 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhhHHHHHHHHHH
Q 003347 27 LDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTS 106 (828)
Q Consensus 27 ~~~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~~i~~~f~~~ 106 (828)
....+|+=..+++++..+.++|+.|.+.+....+. ..--+.-...-++|+.|+.... ..|+.....|-..
T Consensus 12 ~~~L~~~R~~LV~~l~~V~~lLD~LL~~~VL~~ee-~~I~~~~~T~~~kaR~Lld~v~---------~KG~~A~~~F~~~ 81 (98)
T 2nz7_A 12 IQLLKSNRELLVTHIRNTQCLVDNLLKNDYFSAED-AEIVCACPTQPDKVRKILDLVQ---------SKGEEVSEFFLYL 81 (98)
T ss_dssp HHHHHHTHHHHHHHCCCCHHHHHHHHHTTSSCHHH-HHHHHTCCSHHHHHHHHHHHHH---------HHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCHHH-HHHHccCCCcHHHHHHHHHHHH---------HHhHHHHHHHHHH
Confidence 44457777779999999999999999887544443 2111123445789999997543 3566677777777
Q ss_pred HHHHHHHH
Q 003347 107 GLDIMLQL 114 (828)
Q Consensus 107 ~~~l~~~L 114 (828)
..+..++|
T Consensus 82 L~e~~~~~ 89 (98)
T 2nz7_A 82 LQQLADAY 89 (98)
T ss_dssp HHHHHHSS
T ss_pred HHHhCccc
Confidence 77777744
No 240
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=31.48 E-value=3.4e+02 Score=25.65 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhhH--HHHHHHHHHHHHHHH
Q 003347 35 QRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVE--SLMSKIRTSGLDIML 112 (828)
Q Consensus 35 ~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~--~i~~~f~~~~~~l~~ 112 (828)
+...+++.+|..-++||...++. +. --..|++-+..|..+..+.+.+. ..|-++.++ .++..+..+...|..
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l~-~g-E~eeLe~e~~rL~nae~l~~~~~----~a~~~L~~~e~~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSPD-PG-EEEGLNTELSRLSNLHTIAQAAA----GGVELLSDGDLNAAGLIGEAVRALNA 81 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC-TT-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CC-hHHHHHHHHHHHHCHHHHHHHHH----HHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 56679999999999999877643 33 24567777778888888887543 455556543 577777777777766
No 241
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=31.42 E-value=22 Score=30.64 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=37.4
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003347 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
+.|--|---.+ =.|..+.|-.|+.|+..-+..+ ..||+|+.+|..+--+
T Consensus 29 ~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSS-SEETTTTEECCCCSCT
T ss_pred ccChhhccccC-CeeeecchhhHHHHHHHHHhhc-cCCcccCCcCCcceec
Confidence 67888876554 3455668999999999888765 5599999999876443
No 242
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.04 E-value=41 Score=32.32 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=32.3
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
|+-|.|..|...+.+--....|..||+.+-.+ .-...|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~---~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFK---RFGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHH---TTSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccc---ccccccccCCCccCCC
Confidence 45688888887766543445788888877443 3335688888877654
No 243
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=30.82 E-value=2.8e+02 Score=34.27 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=88.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhc
Q 003347 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-------SETKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-------~d~~v~e~A~~aL~nLs~ 614 (828)
......|.+.+...+.+.+..+++.|.++... ..++.|..++.. ....++..|+++|.+++.
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 34555666677777777777788888887551 357778787742 245788899999988874
Q ss_pred CCccHHHHHHcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHH
Q 003347 615 NDNNKSAIANANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATAL 691 (828)
Q Consensus 615 ~~~~k~~I~~~g~l~~Lv~lL~--s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL 691 (828)
.... -+-+.++.+.. ..+.++|..|..+|+.-.-. ...+..+...+.. .+.++.......|
T Consensus 508 ~~p~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 508 RDPR-------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS---------VALVSMVAVRLRREPNLQVASFVYSQM 571 (1056)
T ss_dssp TCHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC---------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hchH-------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 3211 12344667773 45689999888888753211 2346677777766 4788999999999
Q ss_pred HHchhcc
Q 003347 692 FNLSIYH 698 (828)
Q Consensus 692 ~nLs~~~ 698 (828)
.+|+...
T Consensus 572 ~sla~s~ 578 (1056)
T 1lsh_A 572 RSLSRSS 578 (1056)
T ss_dssp HHHTTCC
T ss_pred HHHHhcC
Confidence 9998843
No 244
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.59 E-value=15 Score=30.07 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=11.7
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 4899999999985
No 245
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.41 E-value=81 Score=26.38 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=23.9
Q ss_pred CcccccCcccccc-CCeecCCCcchhHHHHHHHHh-cCCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMT-DPVIVASGQTYERAFIKKWID-LGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~-dPV~~~~G~ty~r~~I~~~~~-~~~~~cP~t~~~l~~ 286 (828)
..|.|++|...|. ....+ +.-+..+-. .....|+.|+..+..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L-------~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGL-------KKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHH-------HHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhhHHHH-------HHHHHHHcCCCCCEECCCCCCccCC
Confidence 4589999888775 43211 111222222 234579999887655
No 246
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.93 E-value=26 Score=31.48 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=40.5
Q ss_pred CCcccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003347 237 PSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 237 p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
|+-|.|..|...+.| +.....|..||+.+-.+-+... ..|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~-~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-CSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-CccccCCCCcCchhe
Confidence 456999999999974 5667889999999987766431 269999998886544
No 247
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.80 E-value=28 Score=25.58 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=22.8
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHh----cCCCCCCCCCCcCCC
Q 003347 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWID----LGLFVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~----~~~~~cP~t~~~l~~ 286 (828)
.|.|++|+..|... ..+..+.. .....||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 47899888776554 23333332 334569999887654
No 248
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.59 E-value=15 Score=36.18 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=18.0
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003347 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
.+.|++|+.++. |- .-+..||+|+.+-
T Consensus 155 ~~~C~~CG~~~~-------g~------------~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYVHE-------GT------------GAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCEEE-------EE------------ECCSBCTTTCCBG
T ss_pred eEEECCCCCEee-------CC------------CCCCCCCCCcCCH
Confidence 688988866654 11 2334799999863
No 249
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.07 E-value=18 Score=30.90 Aligned_cols=13 Identities=46% Similarity=1.076 Sum_probs=11.8
Q ss_pred CCCCcccccCccc
Q 003347 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
++|+++.||+|+.
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999985
No 250
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.58 E-value=35 Score=30.73 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=38.8
Q ss_pred CCcccccCcccccc---CCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 237 PSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 237 p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|+-|.|..|...+. .+.....|..||+.+-.+-+... ..|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccCc
Confidence 67799999999885 36778899999999977765321 269999998865
No 251
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=27.16 E-value=52 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=29.2
Q ss_pred CcccccCccccccCCeecCC----CcchhHHHHHHHHhc
Q 003347 238 SDFCCPLSLELMTDPVIVAS----GQTYERAFIKKWIDL 272 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~----G~ty~r~~I~~~~~~ 272 (828)
.-++|-||.+=++|--.+.| +|.||-.|-..+++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46899999999999876544 799999988888874
No 252
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.84 E-value=41 Score=28.66 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=35.7
Q ss_pred CCcccccCccccccCC-eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 237 PSDFCCPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 237 p~~f~CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|+-|.|..|...+.+. .....|..||+.+- .+.-...|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy---~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCT---TREDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHH---TTCCCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHh---hhhcCCccccCCCcccc
Confidence 5669999999888664 45678999999884 33334679999998864
No 253
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.62 E-value=88 Score=31.91 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHchhcch-hHHHHHHhCcHHHHHHhc-----C----CChHHHHHHHHHHHHHhCCch-hHHHHHh
Q 003347 678 NGTPRGKKDAATALFNLSIYHE-NKARIVQAGAVKHLVDLM-----D----PAAGMVDKAVAVLANLATIPD-GRVAIGQ 746 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~-n~~~iv~~G~V~~Ll~LL-----~----~~~~v~~~Al~~LanLa~~~e-~r~~i~~ 746 (828)
+.++..+..++++++|+-.++. .+..+........+++.+ + .+..++-.+..++.|++..-- .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4567889999999999988887 566555443444445433 1 123455566677788876210 010 1
Q ss_pred CCcHHHHHHHHcc---------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc--CCCHHHHHHHHHH
Q 003347 747 ENGIPVLVEVVEL---------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQAL 813 (828)
Q Consensus 747 ~g~I~~Lv~lL~s---------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~--~g~~r~r~kA~~l 813 (828)
......+++.+.. .+.+....+..+|.+|...++...+. .+....+-.... ...+|.+..+.++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~---a~~~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF---ANSVTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCC---TTTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHH---hccHHHHHHHHHHcccchHHHHHHHhc
Confidence 2234555665542 36788889999999998765432221 122333333321 1367887777654
No 254
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.76 E-value=1.1e+02 Score=28.80 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=53.7
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHH-HHHhhcC-C--CHHHHHHHHHHHHHhhcc
Q 003347 749 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP-LVALSQS-G--TPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 749 ~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~-L~~LL~~-g--~~r~r~kA~~lL~~L~~~ 820 (828)
++..|.+.|. .+++.++..|..+|-.+..+.+ .....+.....+.. |+.++.. . ...+++++..++..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4667888887 4899999999999999988864 45556666677777 7787743 2 358999999888765543
No 255
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.70 E-value=3.8 Score=35.49 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=26.6
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003347 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
..||.|+..|. + ..|+.+|..|=..+... ..||.|+++|..
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~~--a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEMK--ALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEEE--EECTTTCSBCEE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhcc--ccCcchhhHHHH
Confidence 68999998764 2 24444577773332222 359999998853
No 256
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.30 E-value=1.7e+02 Score=32.24 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHHcCCHHHHHHhhcC
Q 003347 560 QREATAELRLLAKHNMDNRMVIANCGAINILV-DMLHSSETKIQENAVTALLNLSINDNN-KSAIANANAIEPLIHVLQT 637 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv-~lL~s~d~~v~e~A~~aL~nLs~~~~~-k~~I~~~g~l~~Lv~lL~s 637 (828)
+.-++..||.+..+.+.+ +.+..++ ..+.+..+..+--++++|.|+-.++.. +..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 566888888887765432 2222233 233345677888999999999877774 4444332334556665431
Q ss_pred --------CCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhc---------CCCHHHHHHHHHHHHHchhcc
Q 003347 638 --------GSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLG---------NGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 638 --------~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~---------s~~~~~~~~Al~aL~nLs~~~ 698 (828)
.+..++..++..++|+|..-.. +. +......+++++. ..+.+...-++.||.+|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1345788888889999863110 00 0123344555554 236778888888888887533
No 257
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.58 E-value=61 Score=33.13 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCc-cHHHHHHcCCHHHHHHhhcC
Q 003347 560 QREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQT 637 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~-lL~s~d~~v~e~A~~aL~nLs~~~~-~k~~I~~~g~l~~Lv~lL~s 637 (828)
+.-++..+|.+..+.+.+ +.+..++. .+.+..+..+--+++++.|+-.++. ++..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 556788888777765432 23333322 2334567788899999999988877 66666544334445544321
Q ss_pred --------CCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcC---------CCHHHHHHHHHHHHHchh
Q 003347 638 --------GSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGN---------GTPRGKKDAATALFNLSI 696 (828)
Q Consensus 638 --------~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s---------~~~~~~~~Al~aL~nLs~ 696 (828)
.+..++..++..++|++..-. .+. +......+++++.. .+.+...-++.||.+|..
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 245678888889999986211 010 11223344444431 256777777777777765
No 258
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.39 E-value=21 Score=31.56 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.5
Q ss_pred CCCCCCCCCcCCC
Q 003347 274 LFVCPKTRQTLAH 286 (828)
Q Consensus 274 ~~~cP~t~~~l~~ 286 (828)
+..||+||+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3569999999875
No 259
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.39 E-value=24 Score=34.22 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=39.6
Q ss_pred CCcccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003347 237 PSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
|+-|.|..|...+.+ +.....|..||+.|-.+-+... ..|+.|++++...
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~~~ 82 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GACSACGQSIPAS 82 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-EECTTTCCEECTT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccC-CccccCCCccccC
Confidence 577999999999875 7788899999999976655321 1599999988753
No 260
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.82 E-value=66 Score=25.82 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=35.0
Q ss_pred CCcccccCccccccC-CeecCCCcchhH-HHHHHHHhcCCCCCCCCCCcCCC
Q 003347 237 PSDFCCPLSLELMTD-PVIVASGQTYER-AFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 237 p~~f~CpI~~~lm~d-PV~~~~G~ty~r-~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|+-|.|..|...+.+ +.....|..||+ .+-.+-+ ...|-.|+..+..
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~~ 73 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAESH 73 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSSC
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCceee
Confidence 567999999988876 667788999998 5865433 3568888765543
No 261
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.61 E-value=2.6e+02 Score=30.77 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcC---------CChHHHHHHHHHHHHHhCCchh-HHHHHh
Q 003347 678 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD---------PAAGMVDKAVAVLANLATIPDG-RVAIGQ 746 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~---------~~~~v~~~Al~~LanLa~~~e~-r~~i~~ 746 (828)
+..+..+..++++|+||-.+......++. ......+++.+. .+..++-.+..++.|++..--. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44678888999999999888874444443 334455665441 1223445566677787762110 00 1
Q ss_pred CCcHHHHHHHHc---------cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc--CCCHHHHHHHHHH
Q 003347 747 ENGIPVLVEVVE---------LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQAL 813 (828)
Q Consensus 747 ~g~I~~Lv~lL~---------s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~--~g~~r~r~kA~~l 813 (828)
...+..+++.+. ..+.++...++.+|.+|...++....... .+..+-.... ...+|.+..+.++
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHT---TCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc---CHHHHHHHHHhcccchHHHHHHHhc
Confidence 223456666665 24788999999999999976654333332 2333333322 2357777766554
No 262
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.51 E-value=1.1e+02 Score=22.28 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=25.0
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHh-c----CCCCCCCCCCcCCC
Q 003347 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWID-L----GLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~-~----~~~~cP~t~~~l~~ 286 (828)
..|.|++|...|.. +..+.+++. . ....|+.|+..+..
T Consensus 11 k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 45889988776643 455666654 2 23569999987653
No 263
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.05 E-value=43 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=23.1
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHh----cCCCCCCCCCCcCCC
Q 003347 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWID----LGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~----~~~~~cP~t~~~l~~ 286 (828)
|.|++|+..|..+ ..+.++.. .....|+.|+..+..
T Consensus 5 y~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 7788777766543 34444443 334569999987765
Done!