BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003348
(828 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
P F CP+SLELM DPVIV++GQTYER+ I+KW+D G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 296 KALIANWCELNNVK 309
K+LIA WCE N ++
Sbjct: 65 KSLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
V KLV+ L ST +TQ+EA +L +A I + G + +LV +L S+++++Q+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 605 AVTALLNL-SXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK- 662
A AL N+ S E L+ +L + E ++ AA L +++ D IK
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLMDPAA 721
I +G + LV LL + +K+AA AL N++ + + IV AG V+ LV L+
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 722 GMVDKAVA-VLANLATIPDGRV-AIGQENGIPVL 753
V K A LAN+A+ P + AI G+ VL
Sbjct: 184 SEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
IP C +S ELM +P I SG TY+R I++ + P TR L LIPN +
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 296 KALIANWCELN 306
K +I + + N
Sbjct: 70 KEVIDAFIQEN 80
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
IP C +S ELM +P I SG TY+R I++ + P TR L LIPN +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 296 KALI 299
K +I
Sbjct: 265 KEVI 268
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 295
IP C +S ELM +P I SG TY+R I++ + P TR L LIPN +
Sbjct: 2 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 296 KALI 299
K +I
Sbjct: 62 KEVI 65
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 169 KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQS 228
++++ L + LI A +L + +Q++ + + +M S HD+ +M
Sbjct: 34 RISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKS----KHDKYLM-DMD 88
Query: 229 QICSPV-------PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281
++ S V IP C +S ELM +P I SG TY+R I++ + P TR
Sbjct: 89 ELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTR 148
Query: 282 QTLAHTTLIPNYTVKALIANWCELN 306
L LIPN +K +I + + N
Sbjct: 149 SPLTQDQLIPNLAMKEVIDAFIQEN 173
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + + +P+ ++++
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + +P+ ++++
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 98 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 153
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + +P+ ++++
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 99 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 154
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + +P+ ++++
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 98
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 99 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 154
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + + +P+ ++++
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 97 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 152
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + + +P+ ++++
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 96
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 97 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 152
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE-NGIPVLVEVVEL 759
++QAG V LV+ M P ++ A A L N+A+ + + + + +P+ ++++
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWA-LTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815
GS KE A AL + +S+ + VLQ A+ P++ L S P A LS
Sbjct: 98 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 153
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296
P +F PL LMTDPV + SG +R+ I + + L P RQTL + L P +K
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPELK 85
Query: 297 ALIANWC 303
I W
Sbjct: 86 EQIQAWM 92
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD-PAAGM 723
+GA+ LV LL + + ++A AL N+ S +E ++ AGA+ LV L+ P +
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 724 VDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 782
+ +A+ L+N+A+ + ++ A+ +P LV+++ + + + A AL + + +
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 783 CSMVLQEGAVPPLVAL 798
V+ GA+P LV L
Sbjct: 173 IQAVIDAGALPALVQL 188
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 126/280 (45%), Gaps = 45/280 (16%)
Query: 543 TQVRKLVEDLKSTSLDTQREATAEL-RLLAKHNMDNRMVIANCGAINILVDMLHSSETKI 601
+++ ++ + L S + Q AT + ++L+ N + VI + GA+ LV +L S +I
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQI 70
Query: 602 QENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 661
+ A+ AL N++ +G E + +VI+
Sbjct: 71 LQEALWALSNIA-----------------------SGGNEQIQ---------AVID---- 94
Query: 662 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD-P 719
+GA+ LV LL + + ++A AL N+ S +E ++ AGA+ LV L+ P
Sbjct: 95 ----AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 720 AAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778
++ +A+ L+N+A+ + ++ A+ +P LV+++ + + + A AL + +
Sbjct: 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210
Query: 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
+ V + GA+ L L + +++AQ L +
Sbjct: 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296
P +F PL LMTDPV + SG +R+ I + + L P RQ L + L P +K
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70
Query: 297 ALIANWC 303
I W
Sbjct: 71 EQIQAWM 77
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 518 PSERFVPRIVSTSGAETRA--DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM 575
P+ R V IV+ A+T+ D + + L ++LK + ++EA + + N
Sbjct: 267 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS---IKKEACWTISNITAGNK 323
Query: 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 611
D + N G I LV++L ++E I++ A A+ N
Sbjct: 324 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 359
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 643 RENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHE 699
++ A T+ +++ ++I+ + +G IGPLV+LL KK+AA A+ N + H+
Sbjct: 308 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 367
Query: 700 NKARIVQAGAVKHLVDLM 717
+V G +K L DL+
Sbjct: 368 QIKYLVSEGCIKPLCDLL 385
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 704 IVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLA--TIPDGRVAIGQENGIPVLVEVVEL 759
++Q+G V V + + + +A L N+A T + +V I +P+ V+++
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLGS 133
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 797
S +E A AL + +S + +VL GA+ PL+A
Sbjct: 134 SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 171
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 643 RENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHE 699
++ A T+ +++ ++I+ + +G IGPLV+LL KK+AA A+ N + H+
Sbjct: 346 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 405
Query: 700 NKARIVQAGAVKHLVDLM 717
+V G +K L DL+
Sbjct: 406 QIKYLVSEGCIKPLCDLL 423
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 518 PSERFVPRIVSTSGAETRA--DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM 575
P+ R V IV+ A+T+ D + + L ++LK + ++EA + + N
Sbjct: 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS---IKKEACWTISNITAGNK 361
Query: 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 611
D + N G I LV++L ++E I++ A A+ N
Sbjct: 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 704 IVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLA--TIPDGRVAIGQENGIPVLVEVVEL 759
++Q+G V V + + + +A L N+A T + +V I +P+ V+++
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLGS 171
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 797
S +E A AL + +S + +VL GA+ PL+A
Sbjct: 172 SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 14/271 (5%)
Query: 534 TRADLSGIETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVD 592
+R L G V +V +++TS LDT R T+ L L+ H+ + + I G I LV
Sbjct: 52 SRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLS-HHREGLLAIFKSGGIPALVR 110
Query: 593 MLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXX-XEPLIHVLQTGSPEARENAAATLF 651
ML S + A+T L NL + ++ +L +P+ A T
Sbjct: 111 MLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKF---LAITTD 167
Query: 652 SLSVI----EDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQ 706
L ++ +++K+ I +G LV ++ N + + + L LS+ NK IV+
Sbjct: 168 CLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVE 227
Query: 707 AGAVKHL-VDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 765
AG ++ L L + +V + L NL+ + + G E+ + +LV + +
Sbjct: 228 AGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQE--GLESVLKILVNQLSVDDVNVL 285
Query: 766 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 796
A L L N+S+ ++V Q V L+
Sbjct: 286 TCATGTLSNLTCNNSKNKTLVTQNSGVEALI 316
>pdb|1TLV|A Chain A, Structure Of The Native And Inactive Lict Prd From B.
Subtilis
Length = 221
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 18 HLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLY 63
H+ S D LD VK+ Y RA + K ++ ++ + L SDE+LY
Sbjct: 167 HMESQDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLY 212
>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
Length = 224
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 18 HLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLY 63
H+ S D LD VK+ Y RA + K ++ ++ + L SDE+LY
Sbjct: 167 HMESEDDFLLDTVKEKYHRAYECTKKIQTYIEREYEHKLTSDELLY 212
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD-PAAGM 723
+GA+ LV LL + + ++A AL N+ S +E ++ AGA+ LV L+ P +
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 724 VDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 782
+ +A+ L+N+A+ + ++ A+ +P LV+++ + + + A AL + + +
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 783 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
V + GA+ L L + +++AQ L +
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 694 LSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRV-AIGQENGIP 751
LS +E ++ AGA+ LV L+ P ++ +A+ L+N+A+ + ++ A+ +P
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 752 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
LV+++ + + + A AL + + + V+ GA+P LV L
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 69 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 128
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLN 151
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 237 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 294
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 295 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 336
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 132 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 189 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 248
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 249 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 305
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 306 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 365
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 366 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 404
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 242 CPLSLELMTDPVIVASGQTYERAFI-----KKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296
CP+ LEL+T P+ + G ++ +A + K +D G CP R + + PN V
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81
Query: 297 ALI 299
++
Sbjct: 82 NIV 84
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 58 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 117
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 118 HQEGAKMAVRLAGGLQKMVALLN 140
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 226 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 283
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 284 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 325
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 121 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 177
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 178 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 237
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 238 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 294
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 295 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 354
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 355 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 393
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 69 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 128
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLN 151
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 237 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 294
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 295 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 336
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 132 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 189 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 248
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 249 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 305
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 306 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 365
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 366 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 404
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 56 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 115
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLN 138
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 224 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 281
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 282 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 323
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 119 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 176 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 235
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 236 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 292
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 293 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 352
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 353 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 391
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 73 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 132
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLN 155
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 241 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 298
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 299 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 340
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 136 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 193 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 252
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 253 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 309
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 310 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 369
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 370 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 408
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 60 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 119
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 120 HQEGAKMAVRLAGGLQKMVALLN 142
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 228 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 285
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 286 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 327
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 123 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 179
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 180 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 239
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 240 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 296
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 297 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 356
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 357 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 395
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 56 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 115
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLN 138
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 224 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 281
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 282 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 323
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 119 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 176 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 235
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 236 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 292
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 293 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 352
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 353 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 391
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 75 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 134
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 135 HQEGAKMAVRLAGGLQKMVALLN 157
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 243 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 300
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 301 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 342
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 138 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 194
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 195 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 254
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 255 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 311
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 312 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 371
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 372 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 410
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 72 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 131
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 132 HQEGAKMAVRLAGGLQKMVALLN 154
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 240 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 297
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 298 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 339
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 135 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 191
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 192 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 251
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 252 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 308
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 309 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 368
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 369 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 407
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E + TL +LS + + I +SG I LV++LG+ A T L NL +
Sbjct: 204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 264 HQEGAKMAVRLAGGLQKMVALLN 286
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 430 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 58/284 (20%)
Query: 526 IVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG 585
++ GA+ L+G ++K+V L T++ T L++LA N +++++I G
Sbjct: 262 LLHQEGAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 318
Query: 586 AINILVDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARE 644
LV+++ + + K+ L LS + L L S +
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378
Query: 645 NAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKA 702
N TL +LS D K G G +G LV LLG+ AA L NL+ ++NK
Sbjct: 379 NCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435
Query: 703 RIVQAGAVKHLV----------DLMDPAAG------------------------------ 722
+ Q G ++ LV D+ +PA
Sbjct: 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495
Query: 723 ---------MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 74 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 133
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 134 HQEGAKMAVRLAGGLQKMVALLN 156
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 242 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 299
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 300 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 341
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 137 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 193
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 194 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 253
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 254 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 310
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 311 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 370
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 371 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 409
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLN 153
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296
Query: 574 NMDNRMVIANCGAINILV-DMLHSSETK-IQENAVTALLNLS 613
N N+M++ G I LV +L + + + I E A+ AL +L+
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 134 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 251 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 73 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 132
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLN 155
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 241 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 298
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 299 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 340
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 58/279 (20%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K+V L T++ T L++LA N +++++I G L
Sbjct: 136 GAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V+++ + + K+ L LS + L L S +N T
Sbjct: 193 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 252
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 253 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 309
Query: 708 GAVKHLV----------DLMDPAAG----------------------------------- 722
G ++ LV D+ +PA
Sbjct: 310 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 369
Query: 723 ----MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 370 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 408
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLN 150
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 518 PSERFVPRIVST----SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKH 573
PS+R V + T S A T+ + G+E + LV+ L S ++ A L L +
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293
Query: 574 NMDNRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLS 613
N N+M++ G I LV + + + I E A+ AL +L+
Sbjct: 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 58/284 (20%)
Query: 526 IVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG 585
++ GA+ L+G ++K+V L T++ T L++LA N +++++I G
Sbjct: 126 LLHQEGAKMAVRLAG---GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182
Query: 586 AINILVDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARE 644
LV+++ + + K+ L LS + L L S +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 645 NAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKA 702
N TL +LS D K G G +G LV LLG+ AA L NL+ ++NK
Sbjct: 243 NCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 703 RIVQAGAVKHLV----------DLMDPAAG------------------------------ 722
+ Q G ++ LV D+ +PA
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 723 ---------MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 757
++ V ++ NLA P + ++ IP LV+++
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 22/281 (7%)
Query: 531 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 590
GA+ L+G ++K V L T++ T L++LA N +++++I G L
Sbjct: 76 GAKXAVRLAG---GLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 132
Query: 591 VDMLHS-SETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAAT 649
V++ + + K+ L LS + L L S +N T
Sbjct: 133 VNIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWT 192
Query: 650 LFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA 707
L +LS D K G G +G LV LLG+ AA L NL+ ++NK + Q
Sbjct: 193 LRNLS---DAATKQEGXEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQV 249
Query: 708 GAVKHLVDLMDPAA---GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG 760
G ++ LV + A + + A+ L +L + + A+ G+PV+V+++
Sbjct: 250 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPP 309
Query: 761 SARGKENAAAAL---LQLCTNSSRFCSMVLQEGAVPPLVAL 798
S A L L LC + + + ++GA+P LV L
Sbjct: 310 SHWPLIKATVGLIRNLALCPANH---APLREQGAIPRLVQL 347
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV LG+ A T L NL +
Sbjct: 13 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLL 72
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ V L++
Sbjct: 73 HQEGAKXAVRLAGGLQKXVALLN 95
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 67 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALLN 149
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 637 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696
T E A TL +LS + + I +SG I LV +LG+ A T L NL +
Sbjct: 67 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 697 YHENKARIVQ-AGAVKHLVDLMD 718
+ E V+ AG ++ +V L++
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALLN 149
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 666 SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD-PAAGM 723
+GA+ LV LL + + ++A AL N+ S +E ++ AGA+ LV L+ P +
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 724 VDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 782
+ +A+ L+N+A+ + ++ A+ +P LV+++ + + + A AL + + +
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 783 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818
V + GA+ L L + +++AQ L +
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 704 IVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVEVVELGS 761
++ AGA+ LV L+ P ++ +A+ L+N+A+ + ++ A+ +P LV+++ +
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Query: 762 ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
+ + A AL + + + V+ GA+P LV L
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA++ L +++HS I
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXG 324
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 325 SAAALRNL 332
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA+++L +++HS I
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 325 SAAALRNL 332
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V + VE LK + Q E+ L +A N ++ GA+ I +++L S +QE
Sbjct: 63 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 122
Query: 604 NAVTALLNLS 613
AV AL N++
Sbjct: 123 QAVWALGNIA 132
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 130
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 131 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 169
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 82 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 140
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 141 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 179
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA+++L +++HS I
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 325 SAAALRNL 332
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 603
V + VE LK + Q E+ L +A N ++ GA+ I +++L S +QE
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 604 NAVTALLNLS 613
AV AL N++
Sbjct: 126 QAVWALGNIA 135
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA++ L +++HS I
Sbjct: 274 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXG 333
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 334 SAAALRNL 341
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 154
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA+++L +++HS I
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 441 SAAALRNL 448
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 703 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 104
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 105 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 698 HENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRV-AIGQENGIPVLVE 755
+E ++ AGA+ LV L+ P ++ +A+ L+N+A+ + ++ A+ +P LV+
Sbjct: 44 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103
Query: 756 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
++ + + + A AL + + + V+ GA+P LV L
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 703 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 703 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 51 NIIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLA 109
Query: 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A+ IP + ++ A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 122 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 177
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 99
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 100 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 104
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 105 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 103
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 104 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 99
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 100 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 703 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 46 NIIRAGLIPKFVSFLGRTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLA 104
Query: 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GAV PL+AL
Sbjct: 105 SPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLAL 144
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 104
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 105 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 103
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + + S F +V++ GA+ PL+AL
Sbjct: 104 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 604
++ L++ LKS SL A L L+ N ++ + + GA+++L +++HS I
Sbjct: 267 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 326
Query: 605 AVTALLNL 612
+ AL NL
Sbjct: 327 SAAALRNL 334
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759
I++AG + V + D + + A A L N+A+ + A+ IP + ++
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWA-LTNIASGTSEQTKAVVDGGAIPAFISLLAS 173
Query: 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 798
A E A AL + S F +V++ GA+ PL+AL
Sbjct: 174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212
>pdb|1MR9|A Chain A, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
pdb|1MR9|B Chain B, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
pdb|1MR9|C Chain C, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
pdb|1MR9|X Chain X, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
pdb|1MR9|Y Chain Y, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
pdb|1MR9|Z Chain Z, Crystal Structure Of Streptogramin A Acetyltransferase
With Acetyl-Coa Bound
Length = 209
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694
I ++K+KIG+ +IGP V ++ NG + D +T FNL
Sbjct: 56 ILNDKLKIGKFCSIGPGVTIIXNGANH-RXDGSTYPFNL 93
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 629 EPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 688
EPL L+ P R+ AA + L I N + G + L DL+ + P +A
Sbjct: 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQMVEDQGFLDSLRDLIADSNPMVVANAV 181
Query: 689 TALFNLSIYHEN 700
AL +S H N
Sbjct: 182 AALSEISESHPN 193
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 629 EPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 688
EPL L+ P R+ AA + L I N + G + L DL+ + P +A
Sbjct: 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQMVEDQGFLDSLRDLIADSNPMVVANAV 181
Query: 689 TALFNLSIYHEN 700
AL +S H N
Sbjct: 182 AALSEISESHPN 193
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 715 DLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 765
++ DP + + ANLA +P V G N +PV V+V+ A GK
Sbjct: 399 EIKDPLTYYLXDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGK 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,728,719
Number of Sequences: 62578
Number of extensions: 794666
Number of successful extensions: 1789
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 208
length of query: 828
length of database: 14,973,337
effective HSP length: 107
effective length of query: 721
effective length of database: 8,277,491
effective search space: 5968071011
effective search space used: 5968071011
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)