Query 003348
Match_columns 828
No_of_seqs 540 out of 2807
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.6E-26 3.4E-31 291.1 33.1 280 541-820 11-313 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.1E-24 2.4E-29 274.6 33.1 279 542-821 445-766 (2102)
3 KOG0166 Karyopherin (importin) 99.9 3.5E-25 7.6E-30 247.8 24.1 279 542-820 108-394 (514)
4 KOG4224 Armadillo repeat prote 99.9 4.8E-24 1E-28 223.7 20.5 278 542-821 166-448 (550)
5 KOG4224 Armadillo repeat prote 99.9 4.6E-24 1E-28 223.8 19.6 276 544-820 127-406 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 4.5E-23 9.7E-28 214.8 14.9 280 542-821 113-400 (526)
7 KOG0166 Karyopherin (importin) 99.9 1.2E-21 2.7E-26 219.4 26.2 280 542-821 151-438 (514)
8 PF04564 U-box: U-box domain; 99.9 1.6E-22 3.4E-27 173.1 5.1 72 236-307 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 2.6E-20 5.5E-25 194.4 19.0 278 542-819 156-443 (526)
10 PF05804 KAP: Kinesin-associat 99.8 8.7E-17 1.9E-21 189.7 29.6 276 542-821 289-651 (708)
11 KOG1048 Neural adherens juncti 99.8 2.1E-17 4.7E-22 190.6 20.5 280 544-824 234-600 (717)
12 PF05804 KAP: Kinesin-associat 99.7 3.5E-16 7.5E-21 184.7 27.7 253 559-819 265-520 (708)
13 smart00504 Ubox Modified RING 99.7 3.5E-17 7.6E-22 136.0 5.4 63 239-302 1-63 (63)
14 KOG2122 Beta-catenin-binding p 99.7 1.3E-15 2.9E-20 180.9 18.5 263 558-821 312-603 (2195)
15 KOG4199 Uncharacterized conser 99.6 1.8E-13 3.9E-18 143.7 25.8 275 545-820 147-445 (461)
16 KOG1048 Neural adherens juncti 99.5 6.3E-13 1.4E-17 154.0 21.5 278 543-822 275-687 (717)
17 PF04826 Arm_2: Armadillo-like 99.5 1.6E-12 3.4E-17 137.5 21.6 191 542-737 11-206 (254)
18 KOG4199 Uncharacterized conser 99.5 1.7E-11 3.7E-16 129.0 26.3 266 552-821 116-405 (461)
19 PF04826 Arm_2: Armadillo-like 99.5 5.2E-12 1.1E-16 133.6 21.3 193 582-778 9-206 (254)
20 KOG2122 Beta-catenin-binding p 99.4 1.4E-12 3.1E-17 155.7 15.6 224 557-780 365-604 (2195)
21 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-10 5.3E-15 133.3 28.7 278 541-819 75-366 (503)
22 KOG4642 Chaperone-dependent E3 99.2 3E-10 6.5E-15 115.2 15.8 79 232-310 204-282 (284)
23 KOG1222 Kinesin associated pro 99.2 1.2E-09 2.7E-14 119.4 21.1 275 542-820 303-664 (791)
24 KOG2042 Ubiquitin fusion degra 99.2 7.3E-11 1.6E-15 140.5 12.4 131 142-306 803-937 (943)
25 COG5113 UFD2 Ubiquitin fusion 99.2 1.3E-10 2.8E-15 129.9 11.6 130 143-306 788-921 (929)
26 PF10508 Proteasom_PSMB: Prote 99.1 1E-08 2.2E-13 119.8 24.3 273 548-824 43-324 (503)
27 PLN03208 E3 ubiquitin-protein 99.1 5.9E-11 1.3E-15 118.0 4.0 61 233-293 12-87 (193)
28 cd00020 ARM Armadillo/beta-cat 99.1 1.9E-09 4E-14 100.0 14.0 116 581-696 3-120 (120)
29 PF15227 zf-C3HC4_4: zinc fing 99.1 6.6E-11 1.4E-15 89.8 2.9 39 242-280 1-42 (42)
30 cd00020 ARM Armadillo/beta-cat 99.1 3.5E-09 7.6E-14 98.2 14.9 116 703-818 2-119 (120)
31 KOG4500 Rho/Rac GTPase guanine 99.0 8.7E-09 1.9E-13 111.9 18.5 277 542-819 86-390 (604)
32 cd00256 VATPase_H VATPase_H, r 99.0 4.1E-08 8.9E-13 110.6 24.7 273 545-817 103-423 (429)
33 TIGR00599 rad18 DNA repair pro 99.0 3.1E-10 6.7E-15 125.8 6.7 69 235-304 22-90 (397)
34 KOG1222 Kinesin associated pro 99.0 2.9E-08 6.3E-13 108.9 20.1 257 543-802 260-559 (791)
35 PRK09687 putative lyase; Provi 99.0 5.6E-08 1.2E-12 105.0 20.8 222 543-815 54-278 (280)
36 PRK09687 putative lyase; Provi 98.9 1.2E-07 2.7E-12 102.4 20.7 223 543-816 23-247 (280)
37 KOG0168 Putative ubiquitin fus 98.9 5.2E-07 1.1E-11 105.1 26.4 257 542-802 166-438 (1051)
38 PF03224 V-ATPase_H_N: V-ATPas 98.9 6.4E-08 1.4E-12 106.5 18.4 249 566-814 33-309 (312)
39 KOG4500 Rho/Rac GTPase guanine 98.9 1.7E-07 3.6E-12 102.1 19.6 275 543-817 223-517 (604)
40 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.5E-07 3.2E-12 103.7 19.4 219 547-766 62-303 (312)
41 KOG0946 ER-Golgi vesicle-tethe 98.8 2.6E-06 5.6E-11 98.8 26.1 258 542-803 21-328 (970)
42 PF11789 zf-Nse: Zinc-finger o 98.7 3.9E-09 8.4E-14 85.4 2.1 44 238-281 10-55 (57)
43 PF13923 zf-C3HC4_2: Zinc fing 98.7 6.8E-09 1.5E-13 77.6 2.9 38 242-280 1-39 (39)
44 PRK13800 putative oxidoreducta 98.6 3.3E-06 7.3E-11 105.5 24.6 224 543-817 621-865 (897)
45 PRK13800 putative oxidoreducta 98.6 5.6E-06 1.2E-10 103.6 24.9 228 542-816 651-896 (897)
46 PF13445 zf-RING_UBOX: RING-ty 98.5 3.2E-08 7E-13 75.2 2.1 36 242-278 1-43 (43)
47 cd00256 VATPase_H VATPase_H, r 98.5 1E-05 2.3E-10 91.4 22.9 233 544-778 144-426 (429)
48 KOG0287 Postreplication repair 98.5 4.8E-08 1E-12 102.7 2.9 64 238-302 22-85 (442)
49 KOG4646 Uncharacterized conser 98.5 1.2E-06 2.5E-11 82.1 11.4 123 542-665 15-139 (173)
50 PF00097 zf-C3HC4: Zinc finger 98.5 8.2E-08 1.8E-12 72.5 3.1 39 242-280 1-41 (41)
51 KOG2160 Armadillo/beta-catenin 98.5 8.5E-06 1.8E-10 88.4 19.7 180 638-817 95-281 (342)
52 KOG0823 Predicted E3 ubiquitin 98.5 7.5E-08 1.6E-12 97.6 2.8 57 238-294 46-104 (230)
53 KOG0168 Putative ubiquitin fus 98.4 5.2E-06 1.1E-10 97.0 17.6 213 541-758 209-436 (1051)
54 KOG2759 Vacuolar H+-ATPase V1 98.4 2.2E-05 4.7E-10 86.3 21.4 268 546-817 117-436 (442)
55 KOG2973 Uncharacterized conser 98.4 6.7E-05 1.4E-09 79.5 23.6 270 544-819 4-315 (353)
56 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.6E-07 3.5E-12 74.2 3.2 47 238-285 1-48 (50)
57 PHA02929 N1R/p28-like protein; 98.4 4.2E-07 9.1E-12 94.6 7.0 49 236-285 171-227 (238)
58 KOG2160 Armadillo/beta-catenin 98.4 1.6E-05 3.4E-10 86.3 19.0 184 596-779 94-284 (342)
59 PF14835 zf-RING_6: zf-RING of 98.4 7.1E-08 1.5E-12 78.3 0.7 58 239-299 7-65 (65)
60 KOG2177 Predicted E3 ubiquitin 98.4 2.5E-07 5.4E-12 100.3 4.8 70 236-308 10-79 (386)
61 KOG0320 Predicted E3 ubiquitin 98.4 1.9E-07 4.2E-12 90.6 2.9 52 239-291 131-184 (187)
62 PF01602 Adaptin_N: Adaptin N 98.4 2.3E-05 5.1E-10 92.2 20.7 253 543-819 79-333 (526)
63 PF01602 Adaptin_N: Adaptin N 98.3 4.3E-05 9.4E-10 89.9 20.7 252 542-817 113-367 (526)
64 KOG0289 mRNA splicing factor [ 98.3 2.4E-07 5.1E-12 100.8 1.2 77 240-330 1-78 (506)
65 COG5432 RAD18 RING-finger-cont 98.3 4.9E-07 1.1E-11 93.3 3.2 65 239-304 25-89 (391)
66 cd00162 RING RING-finger (Real 98.2 1.4E-06 3E-11 66.3 3.8 44 241-284 1-45 (45)
67 PF13639 zf-RING_2: Ring finge 98.2 6.7E-07 1.4E-11 68.7 1.8 40 241-281 2-44 (44)
68 KOG3678 SARM protein (with ste 98.2 9.1E-05 2E-09 81.7 18.7 263 542-819 179-452 (832)
69 KOG4646 Uncharacterized conser 98.2 1.5E-05 3.2E-10 74.8 10.6 147 626-772 16-165 (173)
70 KOG1293 Proteins containing ar 98.1 7.4E-05 1.6E-09 86.0 17.1 273 547-821 236-535 (678)
71 KOG0317 Predicted E3 ubiquitin 98.1 2.1E-06 4.5E-11 89.8 4.2 54 236-290 236-289 (293)
72 smart00184 RING Ring finger. E 98.1 2.9E-06 6.3E-11 62.2 3.8 39 242-280 1-39 (39)
73 KOG2171 Karyopherin (importin) 98.1 0.00021 4.6E-09 87.0 20.9 233 544-779 349-596 (1075)
74 KOG1293 Proteins containing ar 98.1 0.00013 2.8E-09 84.1 17.6 170 619-788 370-544 (678)
75 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00031 6.6E-09 77.5 18.7 231 546-778 159-439 (442)
76 TIGR00570 cdk7 CDK-activating 98.0 7E-06 1.5E-10 87.9 6.0 65 238-302 2-75 (309)
77 KOG2171 Karyopherin (importin) 98.0 0.0016 3.5E-08 79.6 26.4 274 542-818 158-503 (1075)
78 PF05536 Neurochondrin: Neuroc 98.0 0.00018 3.9E-09 84.8 17.8 192 627-819 6-213 (543)
79 PHA02926 zinc finger-like prot 98.0 5.4E-06 1.2E-10 83.6 4.0 50 236-285 167-230 (242)
80 KOG2973 Uncharacterized conser 97.9 0.00035 7.6E-09 74.2 16.9 233 588-825 6-279 (353)
81 KOG2023 Nuclear transport rece 97.9 0.00023 5E-09 81.8 16.3 273 538-820 123-464 (885)
82 PTZ00429 beta-adaptin; Provisi 97.9 0.0014 3.1E-08 79.5 24.1 257 542-818 67-325 (746)
83 KOG0311 Predicted E3 ubiquitin 97.9 2.8E-06 6E-11 90.7 0.3 67 236-302 40-108 (381)
84 PTZ00429 beta-adaptin; Provisi 97.8 0.0031 6.8E-08 76.7 25.2 262 542-817 139-431 (746)
85 KOG2164 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 91.0 3.3 72 236-307 183-262 (513)
86 TIGR02270 conserved hypothetic 97.8 0.0014 3E-08 74.6 20.5 220 543-820 54-297 (410)
87 COG5222 Uncharacterized conser 97.8 2E-05 4.4E-10 81.8 5.2 67 240-306 275-343 (427)
88 PF14634 zf-RING_5: zinc-RING 97.8 1.9E-05 4.1E-10 60.6 3.3 41 241-282 1-44 (44)
89 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0011 2.4E-08 77.7 18.8 213 586-801 23-265 (970)
90 KOG0978 E3 ubiquitin ligase in 97.8 0.00059 1.3E-08 80.5 16.5 54 239-292 643-696 (698)
91 PF05536 Neurochondrin: Neuroc 97.7 0.0019 4.1E-08 76.3 20.4 234 543-777 5-261 (543)
92 COG5574 PEX10 RING-finger-cont 97.7 1.5E-05 3.3E-10 82.3 2.5 51 238-288 214-265 (271)
93 KOG2734 Uncharacterized conser 97.7 0.0073 1.6E-07 67.1 22.2 237 562-800 103-371 (536)
94 PF00514 Arm: Armadillo/beta-c 97.6 9.5E-05 2.1E-09 55.7 5.0 40 574-613 1-40 (41)
95 KOG0212 Uncharacterized conser 97.6 0.00094 2E-08 75.8 14.3 233 540-778 205-445 (675)
96 KOG3678 SARM protein (with ste 97.6 0.0012 2.6E-08 73.2 14.2 179 620-801 174-362 (832)
97 PF14664 RICTOR_N: Rapamycin-i 97.5 0.017 3.7E-07 65.1 23.7 272 542-817 24-362 (371)
98 KOG1517 Guanine nucleotide bin 97.5 0.0041 8.9E-08 75.0 18.5 242 543-786 472-741 (1387)
99 KOG2023 Nuclear transport rece 97.5 0.0039 8.3E-08 72.1 17.4 266 542-820 173-506 (885)
100 PF12678 zf-rbx1: RING-H2 zinc 97.5 9.5E-05 2.1E-09 63.3 3.6 44 236-281 17-73 (73)
101 KOG0297 TNF receptor-associate 97.5 7.7E-05 1.7E-09 84.4 3.5 66 236-302 18-85 (391)
102 KOG4159 Predicted E3 ubiquitin 97.4 8.8E-05 1.9E-09 83.0 3.7 73 232-305 77-154 (398)
103 PF00514 Arm: Armadillo/beta-c 97.4 0.00026 5.7E-09 53.3 5.1 41 737-777 1-41 (41)
104 KOG4413 26S proteasome regulat 97.4 0.013 2.8E-07 62.8 19.3 276 542-818 81-376 (524)
105 KOG2660 Locus-specific chromos 97.4 8.9E-05 1.9E-09 79.1 3.2 65 236-301 12-81 (331)
106 PF12348 CLASP_N: CLASP N term 97.4 0.001 2.2E-08 69.6 10.7 182 636-821 17-208 (228)
107 PF10165 Ric8: Guanine nucleot 97.4 0.013 2.9E-07 67.7 20.4 257 564-821 2-339 (446)
108 PF14664 RICTOR_N: Rapamycin-i 97.3 0.016 3.4E-07 65.4 20.1 247 570-819 10-269 (371)
109 COG5369 Uncharacterized conser 97.3 0.0022 4.9E-08 72.4 12.9 195 606-800 410-618 (743)
110 COG1413 FOG: HEAT repeat [Ener 97.3 0.02 4.4E-07 63.5 20.9 185 543-776 43-241 (335)
111 PF12348 CLASP_N: CLASP N term 97.3 0.0017 3.7E-08 67.9 11.1 182 550-736 14-206 (228)
112 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.0088 1.9E-07 63.9 15.8 226 593-818 157-427 (432)
113 KOG2734 Uncharacterized conser 97.2 0.099 2.1E-06 58.4 23.3 238 542-779 124-402 (536)
114 PF10165 Ric8: Guanine nucleot 97.1 0.065 1.4E-06 62.0 22.8 239 542-780 21-340 (446)
115 TIGR02270 conserved hypothetic 97.1 0.035 7.6E-07 63.3 20.0 151 585-776 54-206 (410)
116 COG5369 Uncharacterized conser 97.1 0.0036 7.7E-08 70.8 11.3 258 562-819 408-741 (743)
117 KOG0212 Uncharacterized conser 97.1 0.027 5.9E-07 64.4 18.2 272 541-819 165-444 (675)
118 PF13646 HEAT_2: HEAT repeats; 97.0 0.0042 9E-08 54.4 8.9 86 587-692 1-88 (88)
119 KOG0824 Predicted E3 ubiquitin 97.0 0.00038 8.3E-09 73.3 2.1 48 241-288 9-56 (324)
120 COG1413 FOG: HEAT repeat [Ener 96.9 0.04 8.7E-07 61.1 18.3 187 585-814 43-237 (335)
121 KOG1789 Endocytosis protein RM 96.9 0.15 3.3E-06 61.9 22.6 255 545-802 1773-2142(2235)
122 PF13646 HEAT_2: HEAT repeats; 96.8 0.0068 1.5E-07 53.0 8.7 85 628-732 1-88 (88)
123 COG5240 SEC21 Vesicle coat com 96.8 0.075 1.6E-06 60.9 18.5 251 542-820 263-556 (898)
124 KOG1242 Protein containing ada 96.7 0.18 3.8E-06 58.8 21.2 258 542-818 133-443 (569)
125 KOG1002 Nucleotide excision re 96.7 0.00083 1.8E-08 75.0 2.3 52 238-289 535-590 (791)
126 smart00185 ARM Armadillo/beta- 96.7 0.0042 9E-08 46.1 5.4 38 576-613 3-40 (41)
127 KOG1813 Predicted E3 ubiquitin 96.7 0.00071 1.5E-08 71.2 1.5 57 240-298 242-298 (313)
128 KOG0802 E3 ubiquitin ligase [P 96.6 0.00098 2.1E-08 78.9 2.0 47 237-284 289-340 (543)
129 KOG1059 Vesicle coat complex A 96.6 0.13 2.7E-06 60.6 18.8 254 540-816 178-440 (877)
130 PF11841 DUF3361: Domain of un 96.5 0.046 9.9E-07 53.8 12.6 119 662-780 6-134 (160)
131 KOG4413 26S proteasome regulat 96.5 0.14 2.9E-06 55.3 16.9 236 586-823 83-337 (524)
132 KOG1241 Karyopherin (importin) 96.5 0.18 3.8E-06 59.9 19.2 276 541-820 127-436 (859)
133 smart00185 ARM Armadillo/beta- 96.4 0.0061 1.3E-07 45.2 4.9 40 657-696 2-41 (41)
134 KOG1517 Guanine nucleotide bin 96.4 0.11 2.5E-06 63.2 17.6 215 603-817 485-730 (1387)
135 PF09759 Atx10homo_assoc: Spin 96.4 0.015 3.2E-07 53.0 8.0 65 724-788 3-70 (102)
136 PF04063 DUF383: Domain of unk 96.4 0.021 4.5E-07 58.3 10.1 121 680-800 8-157 (192)
137 PF12861 zf-Apc11: Anaphase-pr 96.3 0.0043 9.4E-08 54.1 4.0 47 239-285 32-82 (85)
138 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0027 5.9E-08 68.1 3.3 54 236-291 110-167 (260)
139 COG5152 Uncharacterized conser 96.3 0.0017 3.7E-08 64.2 1.5 46 240-286 197-242 (259)
140 KOG2979 Protein involved in DN 96.2 0.0045 9.8E-08 64.3 4.0 63 238-300 175-243 (262)
141 KOG0213 Splicing factor 3b, su 96.2 0.46 9.9E-06 56.3 20.2 233 542-779 798-1067(1172)
142 KOG1241 Karyopherin (importin) 96.2 0.25 5.4E-06 58.7 18.3 235 544-786 260-539 (859)
143 COG5231 VMA13 Vacuolar H+-ATPa 96.1 0.27 5.9E-06 52.9 16.9 220 556-777 162-428 (432)
144 KOG2259 Uncharacterized conser 96.1 0.079 1.7E-06 61.8 13.6 216 544-774 199-472 (823)
145 KOG4628 Predicted E3 ubiquitin 96.1 0.0038 8.3E-08 68.3 3.0 45 240-284 230-277 (348)
146 KOG2879 Predicted E3 ubiquitin 96.1 0.0043 9.2E-08 64.8 3.1 49 237-285 237-287 (298)
147 KOG1789 Endocytosis protein RM 96.0 0.087 1.9E-06 63.9 13.8 137 642-778 1741-1884(2235)
148 KOG4151 Myosin assembly protei 96.0 0.18 4E-06 60.2 16.4 244 569-817 488-739 (748)
149 KOG1078 Vesicle coat complex C 96.0 0.12 2.7E-06 61.3 14.8 259 543-819 245-532 (865)
150 PF05659 RPW8: Arabidopsis bro 96.0 0.049 1.1E-06 53.2 9.8 99 16-116 18-116 (147)
151 KOG1242 Protein containing ada 95.9 0.44 9.5E-06 55.6 18.6 218 542-778 95-325 (569)
152 KOG0213 Splicing factor 3b, su 95.8 0.52 1.1E-05 55.8 18.7 148 669-818 801-953 (1172)
153 KOG1061 Vesicle coat complex A 95.8 0.1 2.2E-06 62.0 13.3 172 541-719 119-291 (734)
154 KOG1824 TATA-binding protein-i 95.8 0.34 7.3E-06 58.8 17.4 234 539-780 43-289 (1233)
155 COG5243 HRD1 HRD ubiquitin lig 95.8 0.0062 1.4E-07 65.7 2.9 46 238-284 286-344 (491)
156 KOG2259 Uncharacterized conser 95.7 0.1 2.2E-06 60.9 12.6 181 589-778 202-440 (823)
157 KOG4367 Predicted Zn-finger pr 95.7 0.004 8.6E-08 68.2 1.3 33 237-269 2-34 (699)
158 KOG3036 Protein involved in ce 95.7 2.5 5.4E-05 44.4 21.2 176 601-777 95-291 (293)
159 COG5096 Vesicle coat complex, 95.7 0.16 3.4E-06 61.5 14.5 144 541-697 53-196 (757)
160 KOG3039 Uncharacterized conser 95.7 0.007 1.5E-07 62.0 2.8 54 238-292 220-277 (303)
161 COG5181 HSH155 U2 snRNP splice 95.6 0.44 9.6E-06 55.3 16.8 233 542-779 603-872 (975)
162 KOG3039 Uncharacterized conser 95.6 0.0076 1.7E-07 61.8 2.5 37 236-272 40-76 (303)
163 PF11841 DUF3361: Domain of un 95.5 0.13 2.7E-06 50.7 10.7 119 702-820 5-132 (160)
164 KOG1248 Uncharacterized conser 95.5 0.54 1.2E-05 58.5 18.3 216 595-819 664-898 (1176)
165 PF09759 Atx10homo_assoc: Spin 95.5 0.05 1.1E-06 49.6 7.3 66 560-625 3-71 (102)
166 KOG0826 Predicted E3 ubiquitin 95.5 0.0054 1.2E-07 65.5 1.2 53 236-289 297-350 (357)
167 COG5096 Vesicle coat complex, 95.4 0.54 1.2E-05 57.0 17.5 167 552-737 28-196 (757)
168 PF04063 DUF383: Domain of unk 95.2 0.082 1.8E-06 54.0 8.7 120 598-717 8-156 (192)
169 PF05004 IFRD: Interferon-rela 95.2 0.96 2.1E-05 49.9 17.7 177 599-777 57-257 (309)
170 PF13513 HEAT_EZ: HEAT-like re 95.2 0.039 8.4E-07 44.1 5.0 55 640-694 1-55 (55)
171 COG5215 KAP95 Karyopherin (imp 94.9 2.4 5.2E-05 49.2 19.8 271 541-820 131-438 (858)
172 PF04078 Rcd1: Cell differenti 94.9 0.98 2.1E-05 48.0 15.8 191 556-746 8-228 (262)
173 KOG1061 Vesicle coat complex A 94.9 0.3 6.4E-06 58.3 13.2 244 541-803 47-293 (734)
174 COG5540 RING-finger-containing 94.9 0.019 4.2E-07 60.6 3.0 47 240-286 324-373 (374)
175 KOG1824 TATA-binding protein-i 94.8 0.94 2E-05 55.2 16.8 263 547-820 9-287 (1233)
176 KOG1062 Vesicle coat complex A 94.8 3.3 7.1E-05 50.0 21.1 270 541-820 177-545 (866)
177 PF13764 E3_UbLigase_R4: E3 ub 94.8 1.7 3.7E-05 53.5 19.7 239 581-821 113-408 (802)
178 PF13513 HEAT_EZ: HEAT-like re 94.7 0.079 1.7E-06 42.3 5.6 54 681-734 1-55 (55)
179 KOG1062 Vesicle coat complex A 94.4 3.7 7.9E-05 49.6 20.4 246 542-802 141-453 (866)
180 KOG1077 Vesicle coat complex A 94.3 2.4 5.1E-05 50.4 18.1 106 541-655 109-216 (938)
181 KOG1059 Vesicle coat complex A 94.1 1.6 3.5E-05 51.9 16.4 240 550-817 116-363 (877)
182 PF08569 Mo25: Mo25-like; Int 94.1 1.3 2.8E-05 49.4 15.3 201 542-744 75-291 (335)
183 KOG3113 Uncharacterized conser 94.0 0.036 7.7E-07 57.3 2.6 51 238-291 110-164 (293)
184 PF11698 V-ATPase_H_C: V-ATPas 94.0 0.16 3.5E-06 47.5 6.7 71 542-612 42-113 (119)
185 PF05004 IFRD: Interferon-rela 94.0 2.2 4.7E-05 47.1 16.8 179 638-820 55-258 (309)
186 KOG3036 Protein involved in ce 94.0 3 6.5E-05 43.8 16.4 144 560-704 96-255 (293)
187 PF04078 Rcd1: Cell differenti 93.8 4.8 0.0001 42.9 17.9 220 598-818 8-261 (262)
188 PF06025 DUF913: Domain of Unk 93.7 7.4 0.00016 44.2 20.8 96 622-717 101-205 (379)
189 KOG0804 Cytoplasmic Zn-finger 93.7 0.022 4.8E-07 63.3 0.6 42 241-285 177-222 (493)
190 PF12755 Vac14_Fab1_bd: Vacuol 93.7 0.37 8E-06 43.7 8.4 68 748-818 27-96 (97)
191 KOG2817 Predicted E3 ubiquitin 93.7 0.043 9.4E-07 60.5 2.8 43 240-282 335-382 (394)
192 KOG1785 Tyrosine kinase negati 93.6 0.033 7.1E-07 60.8 1.6 47 241-287 371-418 (563)
193 KOG1248 Uncharacterized conser 93.5 2.8 6.1E-05 52.5 17.8 219 553-779 664-900 (1176)
194 KOG1645 RING-finger-containing 93.1 0.045 9.8E-07 60.2 1.8 62 239-300 4-71 (463)
195 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.089 1.9E-06 41.6 2.9 45 239-283 2-50 (50)
196 COG5215 KAP95 Karyopherin (imp 92.8 22 0.00047 41.7 22.2 274 542-820 38-358 (858)
197 KOG4692 Predicted E3 ubiquitin 92.8 0.15 3.3E-06 55.0 5.0 48 238-286 421-468 (489)
198 KOG4172 Predicted E3 ubiquitin 92.7 0.039 8.4E-07 43.5 0.5 44 241-284 9-53 (62)
199 PF08569 Mo25: Mo25-like; Int 92.7 8.9 0.00019 42.8 19.1 202 620-821 70-285 (335)
200 KOG1058 Vesicle coat complex C 92.7 3.9 8.5E-05 49.0 16.6 132 631-781 322-467 (948)
201 PF07814 WAPL: Wings apart-lik 92.6 3.3 7.3E-05 46.7 15.8 239 541-791 19-313 (361)
202 PF14668 RICTOR_V: Rapamycin-i 92.4 0.53 1.1E-05 40.3 6.9 65 684-748 4-70 (73)
203 KOG4151 Myosin assembly protei 92.3 1.9 4E-05 52.0 13.7 208 543-756 504-720 (748)
204 PF08045 CDC14: Cell division 92.2 1.6 3.4E-05 46.6 11.8 95 723-817 107-205 (257)
205 KOG2999 Regulator of Rac1, req 91.9 2.1 4.5E-05 49.5 12.8 152 628-779 85-244 (713)
206 PF12717 Cnd1: non-SMC mitotic 91.9 8.6 0.00019 38.7 16.5 92 556-656 1-93 (178)
207 KOG1240 Protein kinase contain 91.9 6.5 0.00014 49.5 17.8 265 544-820 426-726 (1431)
208 COG5181 HSH155 U2 snRNP splice 91.6 2.7 5.8E-05 49.2 13.4 233 586-821 605-872 (975)
209 PF06371 Drf_GBD: Diaphanous G 91.5 2.1 4.5E-05 43.1 11.6 76 701-776 100-186 (187)
210 KOG1240 Protein kinase contain 91.3 7 0.00015 49.3 17.2 231 538-778 457-726 (1431)
211 PF12755 Vac14_Fab1_bd: Vacuol 91.3 1.2 2.7E-05 40.3 8.5 67 667-734 27-94 (97)
212 PF11698 V-ATPase_H_C: V-ATPas 91.2 0.4 8.7E-06 44.9 5.3 71 708-778 43-116 (119)
213 PF14447 Prok-RING_4: Prokaryo 91.0 0.1 2.3E-06 41.6 1.1 47 239-288 7-53 (55)
214 smart00744 RINGv The RING-vari 91.0 0.28 6.1E-06 38.6 3.5 41 241-281 1-49 (49)
215 KOG1001 Helicase-like transcri 91.0 0.058 1.3E-06 65.0 -0.5 49 240-289 455-504 (674)
216 PF12719 Cnd3: Nuclear condens 90.9 3.6 7.8E-05 45.0 13.5 168 585-759 26-208 (298)
217 KOG1060 Vesicle coat complex A 90.8 11 0.00023 45.7 17.5 208 546-778 38-247 (968)
218 KOG0825 PHD Zn-finger protein 90.6 0.07 1.5E-06 62.8 -0.3 48 239-287 123-173 (1134)
219 KOG0883 Cyclophilin type, U bo 90.5 0.16 3.5E-06 55.6 2.4 53 238-291 39-91 (518)
220 PF12719 Cnd3: Nuclear condens 90.5 8.9 0.00019 42.0 16.2 168 542-717 25-206 (298)
221 KOG0827 Predicted E3 ubiquitin 90.2 0.19 4E-06 55.2 2.5 52 237-290 2-61 (465)
222 KOG2114 Vacuolar assembly/sort 90.1 2.7 5.9E-05 50.8 12.0 40 239-282 840-880 (933)
223 KOG2999 Regulator of Rac1, req 90.0 3.5 7.5E-05 47.8 12.3 152 668-819 84-242 (713)
224 KOG1734 Predicted RING-contain 89.9 0.083 1.8E-06 55.1 -0.4 55 238-292 223-288 (328)
225 PF14570 zf-RING_4: RING/Ubox 89.8 0.27 5.8E-06 38.3 2.4 43 242-284 1-47 (48)
226 KOG0915 Uncharacterized conser 89.8 5.3 0.00011 51.4 14.6 226 543-780 818-1071(1702)
227 KOG2274 Predicted importin 9 [ 89.6 5.8 0.00013 48.5 14.3 219 595-819 460-689 (1005)
228 KOG3800 Predicted E3 ubiquitin 89.6 0.27 5.9E-06 52.2 3.1 49 241-289 2-55 (300)
229 PF08324 PUL: PUL domain; Int 89.5 5 0.00011 43.0 13.0 183 587-769 65-266 (268)
230 KOG2611 Neurochondrin/leucine- 89.2 6.6 0.00014 44.9 13.6 130 630-759 15-163 (698)
231 KOG1039 Predicted E3 ubiquitin 89.2 0.24 5.3E-06 54.8 2.6 49 237-285 159-221 (344)
232 PF12717 Cnd1: non-SMC mitotic 89.1 16 0.00035 36.7 15.5 92 598-697 1-93 (178)
233 PF06371 Drf_GBD: Diaphanous G 89.1 3.2 6.9E-05 41.7 10.5 110 543-654 66-186 (187)
234 KOG0828 Predicted E3 ubiquitin 89.0 0.23 5.1E-06 55.9 2.3 33 254-286 603-635 (636)
235 PF13764 E3_UbLigase_R4: E3 ub 89.0 42 0.00092 41.7 21.5 213 543-759 117-386 (802)
236 PF06025 DUF913: Domain of Unk 89.0 11 0.00023 42.9 15.6 216 545-761 111-374 (379)
237 COG5109 Uncharacterized conser 88.2 0.28 6.1E-06 52.3 2.1 42 240-281 337-383 (396)
238 PF08045 CDC14: Cell division 88.2 4.4 9.6E-05 43.2 11.0 93 560-652 108-204 (257)
239 KOG0567 HEAT repeat-containing 88.2 11 0.00024 40.2 13.6 195 542-777 66-280 (289)
240 PF11793 FANCL_C: FANCL C-term 87.8 0.12 2.7E-06 43.8 -0.7 48 239-286 2-67 (70)
241 PF05918 API5: Apoptosis inhib 87.7 31 0.00068 40.9 18.5 131 544-692 24-158 (556)
242 KOG2611 Neurochondrin/leucine- 87.1 43 0.00093 38.6 18.1 185 591-777 17-225 (698)
243 KOG0211 Protein phosphatase 2A 87.1 15 0.00032 45.3 16.0 218 545-772 238-461 (759)
244 KOG0301 Phospholipase A2-activ 87.0 12 0.00026 44.5 14.3 164 548-717 549-725 (745)
245 PF11701 UNC45-central: Myosin 86.7 1.1 2.4E-05 44.2 5.3 142 628-773 5-155 (157)
246 KOG1788 Uncharacterized conser 86.6 11 0.00025 46.5 14.0 252 564-821 663-984 (2799)
247 KOG1058 Vesicle coat complex C 86.4 32 0.00069 41.7 17.3 183 542-738 133-348 (948)
248 KOG1077 Vesicle coat complex A 85.8 91 0.002 37.8 28.1 177 563-749 309-501 (938)
249 COG5175 MOT2 Transcriptional r 85.7 0.57 1.2E-05 50.5 2.7 50 238-288 14-67 (480)
250 KOG0567 HEAT repeat-containing 85.6 56 0.0012 35.1 18.4 60 748-818 218-279 (289)
251 KOG4653 Uncharacterized conser 85.5 17 0.00036 44.6 14.7 214 592-815 734-960 (982)
252 KOG3665 ZYG-1-like serine/thre 85.2 8.8 0.00019 47.1 12.9 190 566-772 494-692 (699)
253 KOG4535 HEAT and armadillo rep 85.2 1.3 2.7E-05 50.4 5.2 177 601-778 407-604 (728)
254 PF12460 MMS19_C: RNAPII trans 85.1 19 0.00042 41.3 15.1 188 541-738 187-396 (415)
255 COG5219 Uncharacterized conser 84.7 0.47 1E-05 57.3 1.7 45 241-285 1471-1523(1525)
256 KOG3161 Predicted E3 ubiquitin 84.6 0.57 1.2E-05 54.5 2.2 59 238-299 10-76 (861)
257 COG5627 MMS21 DNA repair prote 84.2 0.84 1.8E-05 47.0 3.0 65 239-303 189-259 (275)
258 KOG0915 Uncharacterized conser 84.1 87 0.0019 41.1 20.6 215 544-762 957-1186(1702)
259 PF02985 HEAT: HEAT repeat; I 83.7 2.2 4.9E-05 29.8 4.2 29 750-778 2-30 (31)
260 PF02985 HEAT: HEAT repeat; I 83.6 1.7 3.7E-05 30.4 3.6 29 586-614 1-29 (31)
261 KOG1820 Microtubule-associated 83.5 24 0.00052 43.8 15.5 183 544-736 254-443 (815)
262 KOG0301 Phospholipase A2-activ 83.4 27 0.00059 41.6 15.0 174 591-770 550-739 (745)
263 KOG4653 Uncharacterized conser 83.2 10 0.00022 46.4 11.7 176 635-819 736-918 (982)
264 COG5240 SEC21 Vesicle coat com 83.1 1.1E+02 0.0023 36.3 19.6 107 544-657 224-334 (898)
265 KOG3665 ZYG-1-like serine/thre 82.8 12 0.00026 46.0 12.6 193 608-817 494-695 (699)
266 PF14668 RICTOR_V: Rapamycin-i 82.8 6.3 0.00014 33.8 7.3 66 724-790 4-70 (73)
267 KOG0414 Chromosome condensatio 82.7 12 0.00025 47.3 12.3 142 542-696 918-1064(1251)
268 PF12031 DUF3518: Domain of un 82.0 4.1 8.8E-05 42.8 7.0 88 723-810 140-236 (257)
269 KOG1493 Anaphase-promoting com 81.9 0.4 8.6E-06 40.7 -0.3 50 236-285 28-81 (84)
270 PF11707 Npa1: Ribosome 60S bi 81.9 64 0.0014 35.9 17.1 159 543-701 56-242 (330)
271 PF14500 MMS19_N: Dos2-interac 81.8 80 0.0017 34.0 17.4 215 547-779 3-239 (262)
272 KOG2025 Chromosome condensatio 81.5 56 0.0012 39.5 16.6 132 600-740 61-194 (892)
273 PF08324 PUL: PUL domain; Int 80.7 9.8 0.00021 40.7 10.0 135 679-813 122-268 (268)
274 KOG0396 Uncharacterized conser 80.2 0.77 1.7E-05 50.5 1.1 50 239-288 330-382 (389)
275 KOG2025 Chromosome condensatio 79.3 60 0.0013 39.2 15.9 114 542-663 84-198 (892)
276 PF05918 API5: Apoptosis inhib 79.1 9.7 0.00021 45.1 9.7 98 542-651 58-158 (556)
277 KOG2274 Predicted importin 9 [ 79.0 92 0.002 38.7 17.7 223 554-784 461-696 (1005)
278 KOG1060 Vesicle coat complex A 78.4 1E+02 0.0022 37.9 17.5 201 589-815 39-242 (968)
279 KOG2062 26S proteasome regulat 78.3 1E+02 0.0023 37.5 17.5 125 666-807 553-682 (929)
280 KOG0298 DEAD box-containing he 78.0 9.7 0.00021 48.4 9.6 43 238-281 1152-1195(1394)
281 PF12031 DUF3518: Domain of un 77.9 3.9 8.6E-05 42.9 5.4 120 640-760 80-228 (257)
282 KOG0211 Protein phosphatase 2A 77.7 36 0.00079 42.0 14.3 264 544-816 356-622 (759)
283 KOG4185 Predicted E3 ubiquitin 77.0 1.9 4.2E-05 47.0 3.1 51 252-302 22-77 (296)
284 KOG4535 HEAT and armadillo rep 76.7 3.1 6.7E-05 47.4 4.5 173 642-816 407-600 (728)
285 PF12460 MMS19_C: RNAPII trans 76.6 36 0.00077 39.1 13.4 112 585-698 271-396 (415)
286 PRK14707 hypothetical protein; 76.1 1.8E+02 0.0039 39.8 19.9 254 545-803 165-429 (2710)
287 PF04641 Rtf2: Rtf2 RING-finge 76.0 2.7 5.9E-05 45.1 3.9 36 238-273 33-69 (260)
288 KOG1571 Predicted E3 ubiquitin 75.9 1.4 2.9E-05 48.5 1.5 49 232-284 298-346 (355)
289 cd03569 VHS_Hrs_Vps27p VHS dom 75.9 15 0.00032 35.8 8.5 72 542-613 40-113 (142)
290 KOG1788 Uncharacterized conser 75.7 59 0.0013 40.8 14.7 200 562-778 751-983 (2799)
291 PF06416 DUF1076: Protein of u 75.1 1.8 3.8E-05 39.7 1.7 58 232-290 32-96 (113)
292 KOG4265 Predicted E3 ubiquitin 74.9 1.7 3.8E-05 47.7 2.0 47 239-286 290-337 (349)
293 PF05883 Baculo_RING: Baculovi 74.8 3 6.4E-05 39.8 3.2 52 239-291 26-86 (134)
294 COG5194 APC11 Component of SCF 74.7 2.5 5.4E-05 36.3 2.4 44 241-285 33-81 (88)
295 smart00638 LPD_N Lipoprotein N 74.6 82 0.0018 37.8 16.4 177 586-780 312-512 (574)
296 KOG1943 Beta-tubulin folding c 74.2 2.1E+02 0.0046 36.4 19.3 244 541-807 339-599 (1133)
297 cd03561 VHS VHS domain family; 74.0 19 0.00042 34.3 8.8 73 542-614 36-112 (133)
298 KOG2032 Uncharacterized conser 73.3 1.9E+02 0.0041 33.8 20.7 263 541-819 256-531 (533)
299 KOG2137 Protein kinase [Signal 73.0 24 0.00052 42.5 10.8 130 625-762 388-522 (700)
300 PF05605 zf-Di19: Drought indu 72.5 8.3 0.00018 30.8 4.9 33 238-282 1-39 (54)
301 KOG0414 Chromosome condensatio 72.5 25 0.00054 44.6 11.0 136 668-817 920-1062(1251)
302 KOG4362 Transcriptional regula 72.5 1.7 3.7E-05 51.9 1.3 65 238-302 20-86 (684)
303 cd03568 VHS_STAM VHS domain fa 72.2 20 0.00044 34.9 8.5 72 542-613 36-109 (144)
304 COG5209 RCD1 Uncharacterized p 72.2 31 0.00068 35.9 10.0 145 602-746 117-278 (315)
305 PF10367 Vps39_2: Vacuolar sor 71.6 5.9 0.00013 35.9 4.5 36 232-267 71-108 (109)
306 PF10363 DUF2435: Protein of u 71.4 12 0.00025 33.7 6.1 70 543-614 3-72 (92)
307 KOG1820 Microtubule-associated 71.0 54 0.0012 40.9 13.6 145 667-817 294-441 (815)
308 COG5209 RCD1 Uncharacterized p 70.2 20 0.00044 37.3 8.1 143 561-704 118-276 (315)
309 KOG1814 Predicted E3 ubiquitin 69.7 5.4 0.00012 44.6 4.3 59 238-300 183-251 (445)
310 KOG1967 DNA repair/transcripti 69.0 18 0.0004 44.6 8.7 149 542-692 866-1020(1030)
311 KOG2933 Uncharacterized conser 69.0 41 0.00089 36.8 10.5 142 542-694 87-232 (334)
312 smart00288 VHS Domain present 68.8 28 0.0006 33.4 8.5 72 542-613 36-110 (133)
313 cd03561 VHS VHS domain family; 68.2 22 0.00049 33.9 7.8 74 749-822 38-115 (133)
314 KOG1941 Acetylcholine receptor 67.8 1.2E+02 0.0027 34.0 13.9 44 238-281 364-412 (518)
315 KOG1566 Conserved protein Mo25 67.8 2E+02 0.0043 31.8 15.3 197 542-740 78-290 (342)
316 cd03567 VHS_GGA VHS domain fam 67.5 32 0.0007 33.3 8.7 72 542-613 37-115 (139)
317 KOG1943 Beta-tubulin folding c 66.9 3.3E+02 0.0071 34.9 18.7 264 545-818 545-836 (1133)
318 cd03569 VHS_Hrs_Vps27p VHS dom 66.3 24 0.00053 34.2 7.7 75 749-823 42-118 (142)
319 KOG2062 26S proteasome regulat 65.5 1.4E+02 0.003 36.5 14.6 132 585-736 519-653 (929)
320 cd03568 VHS_STAM VHS domain fa 65.0 23 0.0005 34.5 7.2 73 749-821 38-112 (144)
321 KOG1243 Protein kinase [Genera 64.0 1.2E+02 0.0026 36.7 14.0 255 546-817 257-513 (690)
322 PF14666 RICTOR_M: Rapamycin-i 63.6 1.8E+02 0.0039 30.6 14.0 129 680-818 77-224 (226)
323 PLN02189 cellulose synthase 63.5 4.9 0.00011 50.4 2.7 46 240-285 35-87 (1040)
324 KOG4275 Predicted E3 ubiquitin 63.3 1.8 3.8E-05 46.1 -0.9 39 239-284 300-341 (350)
325 PF01347 Vitellogenin_N: Lipop 63.0 52 0.0011 39.8 11.5 162 627-812 396-582 (618)
326 COG5218 YCG1 Chromosome conden 63.0 44 0.00096 39.4 9.9 107 585-698 91-198 (885)
327 KOG1967 DNA repair/transcripti 62.1 26 0.00057 43.3 8.3 142 585-729 867-1017(1030)
328 KOG1940 Zn-finger protein [Gen 62.0 5.9 0.00013 42.6 2.7 43 239-282 158-204 (276)
329 COG5220 TFB3 Cdk activating ki 62.0 2.7 5.9E-05 43.4 0.1 47 238-284 9-63 (314)
330 PF14225 MOR2-PAG1_C: Cell mor 61.2 1.8E+02 0.0039 31.3 13.8 177 542-736 63-254 (262)
331 PF11701 UNC45-central: Myosin 60.8 29 0.00063 34.2 7.2 98 554-652 54-156 (157)
332 PRK14707 hypothetical protein; 60.8 6.3E+02 0.014 35.1 20.6 269 544-819 206-488 (2710)
333 PF05290 Baculo_IE-1: Baculovi 60.7 19 0.00041 34.3 5.4 51 237-287 78-134 (140)
334 PLN02195 cellulose synthase A 60.5 5.7 0.00012 49.5 2.5 46 241-286 8-60 (977)
335 PF08167 RIX1: rRNA processing 59.9 70 0.0015 31.8 9.8 108 627-736 26-143 (165)
336 KOG2930 SCF ubiquitin ligase, 59.6 7.6 0.00016 35.1 2.5 27 256-283 80-106 (114)
337 KOG3002 Zn finger protein [Gen 59.4 8.7 0.00019 42.0 3.5 60 236-302 45-105 (299)
338 KOG2032 Uncharacterized conser 59.0 1.4E+02 0.0031 34.7 12.9 149 595-744 268-423 (533)
339 KOG1078 Vesicle coat complex C 58.5 2.5E+02 0.0054 34.6 15.2 67 586-656 246-312 (865)
340 PF12530 DUF3730: Protein of u 58.2 2.5E+02 0.0053 29.6 17.7 198 587-803 2-216 (234)
341 PF10272 Tmpp129: Putative tra 58.0 6.6 0.00014 43.9 2.3 35 254-288 303-354 (358)
342 COG5098 Chromosome condensatio 57.8 2.1E+02 0.0044 34.9 14.1 129 555-696 908-1037(1128)
343 KOG4739 Uncharacterized protei 56.5 5.2 0.00011 41.8 1.1 40 250-292 15-55 (233)
344 PLN02436 cellulose synthase A 56.1 7.8 0.00017 48.7 2.7 46 240-285 37-89 (1094)
345 cd03567 VHS_GGA VHS domain fam 55.6 41 0.00089 32.6 7.1 71 749-819 39-116 (139)
346 COG1675 TFA1 Transcription ini 55.1 48 0.001 33.5 7.6 54 236-305 110-164 (176)
347 PF14726 RTTN_N: Rotatin, an a 54.9 1E+02 0.0022 28.1 9.0 67 706-772 28-95 (98)
348 PF08167 RIX1: rRNA processing 54.3 1.6E+02 0.0035 29.2 11.4 108 542-653 24-141 (165)
349 KOG2933 Uncharacterized conser 54.3 83 0.0018 34.5 9.6 137 631-775 93-232 (334)
350 KOG1991 Nuclear transport rece 53.9 4.6E+02 0.01 33.3 16.8 131 585-717 410-556 (1010)
351 KOG0825 PHD Zn-finger protein 53.3 15 0.00034 44.2 4.3 57 234-305 91-159 (1134)
352 smart00638 LPD_N Lipoprotein N 52.9 4E+02 0.0087 31.9 16.6 204 543-774 311-542 (574)
353 smart00288 VHS Domain present 52.8 58 0.0013 31.2 7.6 73 749-821 38-113 (133)
354 PF00790 VHS: VHS domain; Int 52.5 42 0.00091 32.3 6.7 72 542-613 41-117 (140)
355 cd00350 rubredoxin_like Rubred 51.7 11 0.00023 27.0 1.8 11 273-283 16-26 (33)
356 PF14726 RTTN_N: Rotatin, an a 51.5 75 0.0016 28.9 7.6 72 537-609 24-95 (98)
357 PRK06266 transcription initiat 50.7 59 0.0013 32.9 7.6 56 236-307 114-170 (178)
358 KOG2956 CLIP-associating prote 50.5 4.7E+02 0.01 30.5 17.5 183 543-734 286-475 (516)
359 PLN02638 cellulose synthase A 49.6 9.8 0.00021 48.0 2.1 46 240-285 18-70 (1079)
360 PF14225 MOR2-PAG1_C: Cell mor 49.6 3.7E+02 0.0079 29.0 14.4 176 585-777 60-254 (262)
361 PF11707 Npa1: Ribosome 60S bi 49.4 4.1E+02 0.0088 29.5 19.9 152 628-779 58-239 (330)
362 KOG2956 CLIP-associating prote 49.2 4.9E+02 0.011 30.4 16.1 141 669-818 331-476 (516)
363 PF14353 CpXC: CpXC protein 49.1 13 0.00028 35.3 2.5 47 239-285 1-49 (128)
364 KOG2137 Protein kinase [Signal 48.8 1.3E+02 0.0029 36.5 11.0 132 666-803 388-521 (700)
365 COG5098 Chromosome condensatio 48.6 45 0.00098 40.1 7.0 107 710-821 301-418 (1128)
366 KOG0314 Predicted E3 ubiquitin 47.6 8.5 0.00018 44.1 1.1 67 234-302 214-284 (448)
367 PF07814 WAPL: Wings apart-lik 47.5 4.6E+02 0.01 29.5 16.8 91 587-677 23-116 (361)
368 PF00790 VHS: VHS domain; Int 46.5 50 0.0011 31.8 6.1 73 749-821 43-120 (140)
369 KOG2034 Vacuolar sorting prote 45.5 46 0.00099 41.2 6.7 37 236-272 814-852 (911)
370 cd03572 ENTH_epsin_related ENT 45.4 71 0.0015 30.3 6.7 72 749-820 39-120 (122)
371 PF11865 DUF3385: Domain of un 44.9 1.5E+02 0.0033 29.3 9.4 144 543-694 10-155 (160)
372 PLN02915 cellulose synthase A 44.8 13 0.00027 46.9 2.1 46 240-285 16-68 (1044)
373 PRK10869 recombination and rep 44.7 6.3E+02 0.014 30.3 20.4 77 30-112 176-255 (553)
374 COG2176 PolC DNA polymerase II 44.5 16 0.00035 46.3 2.8 45 235-291 910-957 (1444)
375 smart00531 TFIIE Transcription 44.3 30 0.00066 33.7 4.3 39 237-287 97-136 (147)
376 PHA02862 5L protein; Provision 43.8 22 0.00047 34.4 3.0 46 241-287 4-55 (156)
377 PRK11088 rrmA 23S rRNA methylt 43.6 10 0.00022 40.8 1.0 27 239-265 2-31 (272)
378 COG5218 YCG1 Chromosome conden 43.5 1.9E+02 0.0041 34.5 10.8 101 707-812 90-192 (885)
379 KOG4464 Signaling protein RIC- 43.2 5.7E+02 0.012 29.4 15.8 82 556-637 110-198 (532)
380 TIGR00373 conserved hypothetic 42.7 13 0.00028 36.9 1.4 37 236-288 106-142 (158)
381 KOG1243 Protein kinase [Genera 41.3 75 0.0016 38.4 7.5 182 542-733 329-512 (690)
382 PF07191 zinc-ribbons_6: zinc- 41.1 2.5 5.4E-05 35.7 -3.3 42 239-286 1-42 (70)
383 KOG2038 CAATT-binding transcri 41.1 4.6E+02 0.0099 32.5 13.7 102 666-776 303-408 (988)
384 cd00729 rubredoxin_SM Rubredox 40.8 19 0.00042 26.0 1.7 10 274-283 18-27 (34)
385 PF12530 DUF3730: Protein of u 40.6 4.6E+02 0.0099 27.5 18.5 131 551-695 9-150 (234)
386 PF14446 Prok-RING_1: Prokaryo 40.4 22 0.00048 28.6 2.1 32 239-273 5-40 (54)
387 PF01347 Vitellogenin_N: Lipop 40.4 3.1E+02 0.0067 33.1 13.1 127 587-730 433-583 (618)
388 PHA02825 LAP/PHD finger-like p 39.6 31 0.00068 34.0 3.4 48 238-286 7-60 (162)
389 KOG1949 Uncharacterized conser 39.5 5.6E+02 0.012 31.5 13.9 144 629-778 177-332 (1005)
390 KOG1812 Predicted E3 ubiquitin 39.1 37 0.00079 38.7 4.5 67 239-306 146-226 (384)
391 COG1592 Rubrerythrin [Energy p 38.3 1.1E+02 0.0024 30.6 7.1 25 239-283 134-158 (166)
392 PF06012 DUF908: Domain of Unk 38.0 1.2E+02 0.0026 33.8 8.3 75 641-715 237-323 (329)
393 PF12830 Nipped-B_C: Sister ch 37.8 2.8E+02 0.0062 28.0 10.4 119 667-801 8-141 (187)
394 KOG4464 Signaling protein RIC- 37.7 4.6E+02 0.01 30.1 12.3 150 670-819 48-228 (532)
395 PF14500 MMS19_N: Dos2-interac 37.5 5.5E+02 0.012 27.6 17.2 215 590-819 4-237 (262)
396 PF11865 DUF3385: Domain of un 37.3 2.2E+02 0.0047 28.2 9.2 144 667-817 10-155 (160)
397 PF10363 DUF2435: Protein of u 36.8 1.3E+02 0.0028 26.9 6.8 67 713-781 8-76 (92)
398 KOG1991 Nuclear transport rece 36.5 1E+03 0.022 30.4 21.6 191 543-736 462-671 (1010)
399 COG0497 RecN ATPase involved i 36.4 8.3E+02 0.018 29.3 17.5 76 30-111 176-255 (557)
400 KOG4718 Non-SMC (structural ma 35.9 23 0.00049 36.4 1.9 45 241-286 183-228 (235)
401 cd08329 CARD_BIRC2_BIRC3 Caspa 35.7 1E+02 0.0022 27.8 5.9 63 27-90 8-70 (94)
402 cd00730 rubredoxin Rubredoxin; 35.5 17 0.00038 28.7 0.8 13 235-247 30-42 (50)
403 KOG1020 Sister chromatid cohes 35.4 3.8E+02 0.0081 35.7 12.5 106 667-780 816-924 (1692)
404 PF00619 CARD: Caspase recruit 35.0 1.6E+02 0.0035 25.2 7.0 65 29-94 3-67 (85)
405 KOG0392 SNF2 family DNA-depend 34.4 1E+03 0.022 31.4 15.7 224 542-779 76-327 (1549)
406 PLN03086 PRLI-interacting fact 34.1 39 0.00085 40.2 3.8 28 257-284 483-514 (567)
407 PF06685 DUF1186: Protein of u 34.0 4.2E+02 0.0092 28.3 11.2 100 586-706 32-153 (249)
408 TIGR00634 recN DNA repair prot 34.0 9E+02 0.019 29.0 20.5 76 31-112 181-262 (563)
409 COG5116 RPN2 26S proteasome re 33.6 9.2E+02 0.02 29.0 15.8 127 631-777 521-650 (926)
410 PLN02400 cellulose synthase 33.4 19 0.00041 45.6 1.1 46 240-285 37-89 (1085)
411 PF14838 INTS5_C: Integrator c 33.3 8.4E+02 0.018 30.1 14.6 196 539-746 177-400 (696)
412 PF14663 RasGEF_N_2: Rapamycin 32.5 1.2E+02 0.0027 28.2 6.2 39 586-624 9-47 (115)
413 KOG1992 Nuclear export recepto 32.5 3.1E+02 0.0068 34.0 10.7 236 586-821 499-776 (960)
414 PRK05978 hypothetical protein; 32.4 25 0.00055 34.4 1.6 32 240-287 34-65 (148)
415 PF08506 Cse1: Cse1; InterPro 32.4 7.9E+02 0.017 27.9 18.1 156 652-813 196-369 (370)
416 PF00301 Rubredoxin: Rubredoxi 32.1 19 0.00042 28.1 0.6 13 235-247 30-42 (47)
417 COG4530 Uncharacterized protei 31.3 34 0.00074 31.3 2.1 31 238-268 8-43 (129)
418 PF10521 DUF2454: Protein of u 31.2 4.1E+02 0.009 28.7 11.0 31 585-615 119-149 (282)
419 COG5656 SXM1 Importin, protein 31.0 1.1E+03 0.024 29.3 17.9 131 584-716 407-550 (970)
420 PF07165 DUF1397: Protein of u 31.0 2.5E+02 0.0055 29.2 8.8 86 26-117 66-151 (213)
421 KOG3899 Uncharacterized conser 30.1 29 0.00062 37.2 1.6 30 259-288 327-368 (381)
422 COG3813 Uncharacterized protei 29.9 49 0.0011 28.0 2.6 37 257-296 27-63 (84)
423 KOG1020 Sister chromatid cohes 29.8 1.1E+03 0.025 31.6 15.4 106 585-697 816-922 (1692)
424 KOG1566 Conserved protein Mo25 29.7 8.1E+02 0.018 27.2 16.5 201 620-820 73-287 (342)
425 PF04388 Hamartin: Hamartin pr 29.2 5.5E+02 0.012 31.6 12.6 133 585-736 4-140 (668)
426 cd00197 VHS_ENTH_ANTH VHS, ENT 29.2 3.3E+02 0.0071 24.9 8.5 71 542-612 36-113 (115)
427 PF12906 RINGv: RING-variant d 28.8 31 0.00068 26.8 1.3 29 252-280 13-47 (47)
428 PF12726 SEN1_N: SEN1 N termin 28.5 3.9E+02 0.0085 33.2 11.4 156 667-822 441-611 (727)
429 cd08324 CARD_NOD1_CARD4 Caspas 28.3 1.5E+02 0.0033 26.1 5.4 58 30-87 3-62 (85)
430 PF04499 SAPS: SIT4 phosphatas 28.1 3.9E+02 0.0085 31.4 10.6 111 707-820 20-150 (475)
431 KOG1087 Cytosolic sorting prot 27.8 1.8E+02 0.0038 34.1 7.6 75 749-823 39-116 (470)
432 cd03565 VHS_Tom1 VHS domain fa 27.6 3.9E+02 0.0084 25.8 8.9 72 542-613 37-114 (141)
433 COG5116 RPN2 26S proteasome re 27.4 1.2E+02 0.0025 36.0 5.9 66 707-780 550-618 (926)
434 cd00197 VHS_ENTH_ANTH VHS, ENT 27.0 2.8E+02 0.0062 25.3 7.6 70 749-818 38-114 (115)
435 PF07923 N1221: N1221-like pro 26.1 1.4E+02 0.0031 32.6 6.2 55 541-595 58-126 (293)
436 PF08216 CTNNBL: Catenin-beta- 26.1 66 0.0014 29.8 3.0 40 562-602 65-104 (108)
437 KOG2910 Uncharacterized conser 25.9 3.4E+02 0.0074 27.7 8.1 45 149-193 121-165 (209)
438 PF08746 zf-RING-like: RING-li 25.6 70 0.0015 24.4 2.6 39 242-280 1-43 (43)
439 cd08050 TAF6 TATA Binding Prot 25.5 4.1E+02 0.0089 29.8 9.9 102 544-655 179-297 (343)
440 PF03854 zf-P11: P-11 zinc fin 25.5 28 0.00061 27.1 0.4 33 254-287 16-48 (50)
441 PF09162 Tap-RNA_bind: Tap, RN 25.1 44 0.00095 29.8 1.6 25 253-280 10-34 (88)
442 cd03565 VHS_Tom1 VHS domain fa 25.0 3.7E+02 0.0081 26.0 8.3 75 749-823 39-119 (141)
443 PF08389 Xpo1: Exportin 1-like 24.9 4.6E+02 0.0099 24.5 9.0 106 541-650 24-148 (148)
444 PF14569 zf-UDP: Zinc-binding 24.7 64 0.0014 27.9 2.5 47 240-286 10-63 (80)
445 PF04821 TIMELESS: Timeless pr 24.3 9E+02 0.02 25.9 14.3 122 543-697 13-150 (266)
446 PF01365 RYDR_ITPR: RIH domain 24.3 2.6E+02 0.0055 28.7 7.5 99 700-801 35-153 (207)
447 KOG2005 26S proteasome regulat 24.1 1.4E+03 0.03 28.1 13.9 73 541-615 46-126 (878)
448 TIGR01562 FdhE formate dehydro 23.9 1.7E+02 0.0037 32.3 6.3 43 240-283 185-233 (305)
449 PF06844 DUF1244: Protein of u 23.8 46 0.00099 27.8 1.4 12 261-272 12-23 (68)
450 PHA03096 p28-like protein; Pro 23.6 51 0.0011 35.9 2.2 44 240-283 179-232 (284)
451 PF07539 DRIM: Down-regulated 23.5 5.5E+02 0.012 24.9 9.1 35 660-694 10-44 (141)
452 PF10408 Ufd2P_core: Ubiquitin 23.4 1.4E+02 0.0031 36.3 6.2 43 141-190 579-624 (629)
453 PF12252 SidE: Dot/Icm substra 23.3 1.6E+03 0.036 29.0 14.6 117 69-200 1013-1154(1439)
454 PF10521 DUF2454: Protein of u 23.2 6.8E+02 0.015 27.1 10.8 72 542-613 118-202 (282)
455 COG5236 Uncharacterized conser 23.1 59 0.0013 35.8 2.4 45 238-283 60-106 (493)
456 PF04423 Rad50_zn_hook: Rad50 22.9 24 0.00052 28.1 -0.4 12 276-287 22-33 (54)
457 PF11864 DUF3384: Domain of un 22.8 1.2E+03 0.027 27.0 17.0 85 722-812 230-323 (464)
458 PF12231 Rif1_N: Rap1-interact 22.6 1.1E+03 0.024 26.5 12.8 132 680-818 59-203 (372)
459 PF13251 DUF4042: Domain of un 22.4 6.8E+02 0.015 25.4 9.8 110 670-779 43-176 (182)
460 cd08325 CARD_CASP1-like Caspas 22.4 1.8E+02 0.0038 25.5 4.9 60 30-89 2-63 (83)
461 COG3364 Zn-ribbon containing p 22.2 41 0.00089 30.5 0.9 24 255-283 6-29 (112)
462 PF12830 Nipped-B_C: Sister ch 22.2 3.6E+02 0.0078 27.3 8.0 67 542-613 7-73 (187)
463 PRK12495 hypothetical protein; 22.1 1.7E+02 0.0038 30.4 5.5 32 236-286 39-70 (226)
464 KOG2676 Uncharacterized conser 21.8 1.3E+02 0.0028 33.7 4.6 63 726-788 375-440 (478)
465 KOG4642 Chaperone-dependent E3 21.3 21 0.00046 37.6 -1.2 65 232-298 18-82 (284)
466 KOG4231 Intracellular membrane 21.2 36 0.00078 39.4 0.4 65 672-736 333-399 (763)
467 PF06676 DUF1178: Protein of u 21.2 93 0.002 30.5 3.2 33 256-293 9-52 (148)
468 PF04821 TIMELESS: Timeless pr 21.1 6.9E+02 0.015 26.9 10.2 103 619-739 33-152 (266)
469 KOG0883 Cyclophilin type, U bo 21.1 45 0.00097 37.3 1.1 53 237-289 99-156 (518)
470 TIGR03847 conserved hypothetic 20.8 93 0.002 31.2 3.1 23 269-291 151-174 (177)
471 KOG1609 Protein involved in mR 20.7 75 0.0016 34.7 2.8 53 235-287 73-136 (323)
472 PF09845 DUF2072: Zn-ribbon co 20.7 43 0.00094 32.0 0.8 24 255-283 5-28 (131)
473 PF06012 DUF908: Domain of Unk 20.6 4.5E+02 0.0097 29.2 8.9 73 683-755 238-323 (329)
474 KOG4231 Intracellular membrane 20.5 77 0.0017 36.9 2.8 159 647-815 226-395 (763)
475 KOG1848 Uncharacterized conser 20.3 2.3E+02 0.005 37.2 7.0 177 626-807 840-1033(1610)
476 KOG3842 Adaptor protein Pellin 20.3 90 0.002 34.0 3.1 51 237-287 339-416 (429)
477 KOG2676 Uncharacterized conser 20.1 88 0.0019 34.9 3.0 62 563-624 376-440 (478)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=291.08 Aligned_cols=280 Identities=24% Similarity=0.286 Sum_probs=252.3
Q ss_pred hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 003348 541 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~ 617 (828)
....|..|++.|+++ +++.|..|+..|+.|++.+++||..|++ .|+||.|+.+|.+++..++++|+++|.||+.++.
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 467899999999977 7899999999999999999999999997 6999999999999999999999999999999999
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHH-hhCChHHHHHhhcCCC---HHHHHHHHHH
Q 003348 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIG-RSGAIGPLVDLLGNGT---PRGKKDAATA 690 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~-~~g~I~~Lv~LL~s~~---~~~~~~Al~a 690 (828)
++..|+..|+|++|+.+|++|+.+.+++|+++|++|+.+ +.++..|+ ..|++|.|+++|++++ ..++..|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 45565554 5799999999999974 2356677899
Q ss_pred HHHchhcchhHHH-HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccC-CHHHHH
Q 003348 691 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE 766 (828)
Q Consensus 691 L~nLs~~~~n~~~-iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke 766 (828)
|+||+.+.+++.+ +++.|+|+.|+.+| +.+..++..|+++|.+++.+ ++++..+++.|+||.|+++|+++ ++.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999998865 58999999999999 56788899999999998874 77999999999999999999875 569999
Q ss_pred HHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCC---------HHHHHHHHHHHHHhhcc
Q 003348 767 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 767 ~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~---------~r~r~kA~~lL~~L~~~ 820 (828)
+|+++|.+||.++.+++..+++.|+++.|+.++.... ...++.|.++|.++...
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998654 33589999999998763
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.1e-24 Score=274.64 Aligned_cols=279 Identities=23% Similarity=0.325 Sum_probs=247.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.++.|+++|++++...|..|++.|++++..+++++..++++|+||.|+.+|.+++.+++++|+++|.||+.++.+...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999988655444
Q ss_pred -HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-------------------------------------HH-
Q 003348 622 -IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK- 662 (828)
Q Consensus 622 -I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-------------------------------------~~- 662 (828)
+.+.|++++|+++|++++.+.+++|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 557899999999999999999999999999996422111 01
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--Cc
Q 003348 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IP 738 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~ 738 (828)
....|+++.|++||++++..+++.|+++|.|++. .++++..++..|+|++|+.+| ..+.++..+++++|.+|+. ..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 1124899999999999999999999999999998 556788899999999999999 5667889999999999996 44
Q ss_pred hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 739 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 739 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+++..+++.|+|+.|+++|.+.+..+++.|+.+|.+++...+ ....+..+|++++|+.++++|+++.|+.|.++|..|.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 556778999999999999999999999999999999999876 5677778999999999999999999999999888777
Q ss_pred ccc
Q 003348 819 NQR 821 (828)
Q Consensus 819 ~~~ 821 (828)
+..
T Consensus 764 ~~~ 766 (2102)
T PLN03200 764 KHF 766 (2102)
T ss_pred hCC
Confidence 654
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-25 Score=247.78 Aligned_cols=279 Identities=23% Similarity=0.289 Sum_probs=251.8
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003348 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.||+.|. ..++..|..|+|+|.++|.++.+.-..++++|++|.|+.+|.+++..+++.|+++|+|++.+ +..|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 378999999997 55699999999999999999999999999999999999999999999999999999999987 5678
Q ss_pred HHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh-
Q 003348 620 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~- 696 (828)
..+.+.|++++|+.++..... ....+++++|.||+........+.. ..++|.|..+|.+.+.++..+|+|||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999988764 7899999999999987655444444 3889999999999999999999999999997
Q ss_pred cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003348 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~ 773 (828)
.++..+.+++.|+++.|+++| +.+..++..|+.++.|++. +....+.+++.|+++.|..++. +.....+..|||+|.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 456667788999999999999 5667788899999999999 4455677899999999999998 567779999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|++.++.++.+.|+..|++|.|+.+++.+.-++|+.|++++.++...
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.8e-24 Score=223.69 Aligned_cols=278 Identities=24% Similarity=0.336 Sum_probs=258.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+.+..|.++-++.+..+|..+...|.+++. +.+||..++.+|++|.|+.++.+.|..+|+.+++++.|++.+..+++.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4567788887778889999999999999987 678999999999999999999999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003348 622 IANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 622 I~~~g--~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
+++.+ .++.|+.+.+++++.++..|..+|.+|+.+.+++..|++.|.+|.+++||++.........+.++.|++..+-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99987 9999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003348 700 NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
|...++++|.+.+|+++| ..+++++..|..+|+||+. .+.++..|.+.|+||.+.+++..+.-.+|+.-.+++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 999999999999999999 4567799999999999998 7788999999999999999999999999999888888888
Q ss_pred hCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 777 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 777 ~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
.++. .+..+.+.|+++.|+.+..+.+.+++..|+.+|-+|....
T Consensus 405 l~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 405 LNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred hccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 7664 5688889999999999999999999999999998887643
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.6e-24 Score=223.81 Aligned_cols=276 Identities=24% Similarity=0.367 Sum_probs=255.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+..|+..+-++..++|..++++|.+|+.- .+||..|+..|++.+|..+-++.+..+|.+|..+|.|+....+|+..++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 345677777777789999999999999986 5899999999999999998888999999999999999999999999999
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhC--ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 624 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.+|++|.|+.++++++..+++++..++.+++.+..+++.+++.+ .++.||+|+.+++++++..|..+|.||+.+.+.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999986 9999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~Av~~L~~L~~~~ 779 (828)
..++++|.+|.++++| ++....+-..++.+.|++.++-+...|++.|++..||.+|+-+ ++++|-+|+.+||+|+..+
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 9999999999999999 5667778888899999999999999999999999999999875 5669999999999999988
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+..+.+.|++++|..|+..+.-.++.....++..|.-.
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 88899999999999999999999888888888877776543
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=4.5e-23 Score=214.80 Aligned_cols=280 Identities=22% Similarity=0.238 Sum_probs=243.8
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 003348 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k 619 (828)
.+.|+.+++++. ....-.|.+|+|.|.+++.........++++|++|.++++|.+.+.+++++++|+|.|++.+ +..|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 467999999995 44455688999999999998877777888999999999999999999999999999999987 4578
Q ss_pred HHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 620 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~--~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
..+.+.|++.+++.+|.+.. .....++.++|.||+........-.. ..++|.|.+|+.+.++++..+|+|||..|+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 89999999999999998764 47889999999999974322111111 2568999999999999999999999999999
Q ss_pred cc-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003348 697 YH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
.+ +....+++.|+.+.|+++| +++..+...|+..+.|+.... ...+.+++.|+++.+-.+|.+.-+.++..|||++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 54 5567788999999999999 677778899999999999944 45677889999999999999988899999999999
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
|+..++.++.+.+++.+.+|+|+.++..-.-++|+.|.|++.+.....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999998876543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-21 Score=219.42 Aligned_cols=280 Identities=23% Similarity=0.283 Sum_probs=246.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCccHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~-~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.|+.|+.++.+++.+++.+|+++|.+++.+++..|..+.+.|+++.|+.++...+. .+..+++|+|.||+.+.+...
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3678999999999999999999999999999999999999999999999999988766 688999999999998754322
Q ss_pred H-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003348 621 A-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
. -.-..+++.|..+|.+.+.++...|+++|.+|+..... -..+.+.|+++.|+++|.+.+..++..|++++.|+....
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 2 22346899999999999999999999999999965444 455667799999999999999999999999999999866
Q ss_pred hhH-HHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003348 699 ENK-ARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 699 ~n~-~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
+.. ..++..|+++.|..+|. +...++.+|+|++.|++. +.+..++++++|.+|.|+.+|.++.-+.|..|+|++.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 555 56788999999999993 445588999999999998 66788999999999999999999999999999999999
Q ss_pred HhhCC-HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 775 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 775 L~~~~-~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
++..+ ++....+++.|++++|+.+|...+.++-..+...|.++....
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99875 567778889999999999998888888888888888876643
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.86 E-value=1.6e-22 Score=173.06 Aligned_cols=72 Identities=47% Similarity=0.882 Sum_probs=63.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 307 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~ 307 (828)
||++|+||||+++|+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999977899999999999999999999999999999985
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=2.6e-20 Score=194.38 Aligned_cols=278 Identities=22% Similarity=0.251 Sum_probs=242.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCcc-
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNN- 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~- 618 (828)
.+.||.++++|.+.+.+++.+++|+|.+++.+++..|..+.+.|++..|+.+|.+. +..+..++.|.|.||+...+.
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 36799999999999999999999999999999999999999999999999999875 457889999999999865321
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
-..-.-..++|.|.+++.+.++++...|++++.+|+..+..+ ..+.+.|..+.|+++|.+.+..++.-|++.+.|+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 111112346899999999999999999999999999866554 4455679999999999999999999999999999886
Q ss_pred chhH-HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003348 698 HENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 698 ~~n~-~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.+.+ ..++..|+++.+..+| ++...++.+|||.+.|+.. +.+..+++++.+.+|.|+.+|....-+.+..|||++.|
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 5677899999999999 5667899999999999988 77888999999999999999999999999999999999
Q ss_pred HhhCC---HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 775 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 775 L~~~~---~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
...++ ++....++..|.+.+|+.+|...+.++-+.|...++++-+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 98865 5677788899999999999999998899999888887644
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=8.7e-17 Score=189.68 Aligned_cols=276 Identities=19% Similarity=0.253 Sum_probs=226.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
++.|+.|++.|.+++.+....++..|.+|+.. .+|+..|++.|+|+.|+.++.+++.+++..++.+|.|||.++..|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67899999999999999999999999999994 57999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchh
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n 700 (828)
+++.|++|.|+.+|.++ ..+..++.+|.+||.++++|..+...++++.|+++|-++ ..++...++.++.||+.++.|
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999865 456779999999999999999999999999999987654 666777888888899999888
Q ss_pred HHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHH-------
Q 003348 701 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANL------- 734 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~--------------------------------------~~~~v~~~Al~~LanL------- 734 (828)
...+.+.|+++.|++.. . .+.+..-+++++|+||
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 88888877776665432 0 1223344566777776
Q ss_pred -------------------------------------hCCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 003348 735 -------------------------------------ATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 775 (828)
Q Consensus 735 -------------------------------------a~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L 775 (828)
|..++....+.+.|.++.|+++++. .+++..-+.+.+++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 3344444455566777777777754 3566777888888888
Q ss_pred hhCCHHhHHHHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 776 CTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 776 ~~~~~~~~~~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..+.. .+..++ +.+++..|+.++++.++.+|+.|-.+|-.+....
T Consensus 606 l~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 606 LFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 88865 444444 5789999999999999999999999998887653
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=2.1e-17 Score=190.57 Aligned_cols=280 Identities=23% Similarity=0.252 Sum_probs=228.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNKS 620 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~---~~~k~ 620 (828)
.++..+.+|.+.++.+|..|+..|..+++.+.+.+..+.+.|+|+.||.+|.+.+.++|.+|+++|.||... +.||.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 578899999999999999999999999999999999999999999999999999999999999999999865 35899
Q ss_pred HHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC--------------CHHHHH
Q 003348 621 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPRGKK 685 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~--------------~~~~~~ 685 (828)
.|.+.++|+.++++|+. ++.+++++.+++||||++.|..|..|+... +..|.+-+-.. ...+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999986 789999999999999999988888886643 45554443211 256788
Q ss_pred HHHHHHHHchh-cchhHHHHHH-hCcHHHHHHhc-------CCChHHHHHHHHHHHHHhCCch-----------------
Q 003348 686 DAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD----------------- 739 (828)
Q Consensus 686 ~Al~aL~nLs~-~~~n~~~iv~-~G~V~~Ll~LL-------~~~~~v~~~Al~~LanLa~~~e----------------- 739 (828)
++..+|.|++. ..+.+.+|.+ .|.|..|+..+ +.+...+++|+.+|.||+..-+
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999998 7788888887 89999999877 2556789999999999975221
Q ss_pred ----------------hHH---------------------HHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH-
Q 003348 740 ----------------GRV---------------------AIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS- 780 (828)
Q Consensus 740 ----------------~r~---------------------~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~- 780 (828)
-+. -+....+|..-..+| .+.++.+.|.++++|.||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 001 001111233323334 35788999999999999998753
Q ss_pred ---HhHHHH-HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccccc
Q 003348 781 ---RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 824 (828)
Q Consensus 781 ---~~~~~v-~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~~ 824 (828)
..+..+ .++.+.+.|++|++.+++++.+.+..+|++|+.....+
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 344455 78999999999999999999999999999998876543
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=3.5e-16 Score=184.66 Aligned_cols=253 Identities=21% Similarity=0.249 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC
Q 003348 559 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 638 (828)
Q Consensus 559 ~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~ 638 (828)
..+-+...|.+|+. +..+...+.+.|+|+.|+.+|++++.++...+++.|.+||+..+||..|.+.|++++|++++.++
T Consensus 265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 44567788999998 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-
Q 003348 639 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 717 (828)
Q Consensus 639 ~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL- 717 (828)
+...+..++.+|+|||.+++.|..++..|++|.|+.+|.+++ .+..|+.+|+|||.+++++..+...++++.|++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 55679999999999999999999999999999987
Q ss_pred -CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHH
Q 003348 718 -DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 796 (828)
Q Consensus 718 -~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~ 796 (828)
.++..+...+++++.||+.++.+.+.|++.++++.|++......+ .-...++.|++.+++.....+. +.+..|+
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 355556667899999999999999999999999999988755333 2244689999999865444443 4788888
Q ss_pred HhhcCCC-HHHHHHHHHHHHHhhc
Q 003348 797 ALSQSGT-PRAKEKAQALLSYFRN 819 (828)
Q Consensus 797 ~LL~~g~-~r~r~kA~~lL~~L~~ 819 (828)
.++..+. +...-.+.++|.+|.-
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhccc
Confidence 8888764 5566666777777653
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.68 E-value=3.5e-17 Score=136.02 Aligned_cols=63 Identities=52% Similarity=0.892 Sum_probs=60.3
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 57899999999999999999999999998
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=1.3e-15 Score=180.87 Aligned_cols=263 Identities=25% Similarity=0.297 Sum_probs=227.1
Q ss_pred HHHH-HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHH
Q 003348 558 DTQR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIA 623 (828)
Q Consensus 558 ~~q~-~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~------------d~~v~e~A~~aL~nLs~~-~~~k~~I~ 623 (828)
+-|. .|+..|-.+++ +++.|..+.+.|++..+..||.-+ ...++..|.++|.||.+. ..||..++
T Consensus 312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3454 78888889999 679999999999999999987531 244889999999999876 56788877
Q ss_pred H-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHHchh-cc
Q 003348 624 N-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YH 698 (828)
Q Consensus 624 ~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~-~~ 698 (828)
. .|++..+|..|.+...++....+.+|.||++.. ..|..+-+.|-+..|+.. |+.......+..+.||+||+. ..
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 599999999999999999999999999999943 346677777999998877 566677889999999999998 56
Q ss_pred hhHHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003348 699 ENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 699 ~n~~~iv~-~G~V~~Ll~LL~-----~~~~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+||..|.. .|++..|+.+|. ....+++.|-+||.|++. +++.|+.+.+.+.+..|+..|++.+-.+.-|+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 89999997 899999999993 235688999999999654 77889999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 769 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 769 v~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
|++||||...+++.++.+++.|+++.|..|+.+.+.-+.+-++..|++|-+++
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888888888888887766
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.8e-13 Score=143.67 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=231.1
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCcc---
Q 003348 545 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN--- 618 (828)
Q Consensus 545 V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~--- 618 (828)
...++..|. ..+.++-...+..++.-+-.++.||..+.+.++.+.+...|... ..++...+.+++.-|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 445555554 45566677788888888888899999999999999999877654 346888899999988776543
Q ss_pred -------HHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCC----HHHHHH
Q 003348 619 -------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKKD 686 (828)
Q Consensus 619 -------k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~----~~~~~~ 686 (828)
...|+..|++..|++.|+-+ ++.+...+..+|..|+..++....|.+.|++..|+.++.+.+ ....+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 45677788999999999876 577888999999999999999999999999999999998743 345678
Q ss_pred HHHHHHHchhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc--C
Q 003348 687 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--G 760 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~ 760 (828)
++..|..|+.+++++..+++.|+.+.++.++ ..++-+++.++.++..||- .|+.-..+++.|+-...++-|+. .
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8889999999999999999999999999987 4678889999999999998 88888889999998888998875 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 761 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 761 s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+|.+||+.+.|+...+.+++..++.. |+..|+......++..+..|...||-|-.+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 56799999999999999998777777654 688899998888888888888899866443
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.52 E-value=6.3e-13 Score=154.00 Aligned_cols=278 Identities=22% Similarity=0.261 Sum_probs=216.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~--nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+.|++||.+|.+.+.++|.+|+++|++|.+.+.. |+..|.+.++|+.|+.+|.. .|.++++....+|+||+.++..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 4678999999999999999999999999998766 99999999999999999987 79999999999999999887766
Q ss_pred HHHHHcCCHHHHHHhhcCC--------------CHHHHHHHHHHHHHhcc-CcchHHHHHhh-CChHHHHHhhcC-----
Q 003348 620 SAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN----- 678 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~--------------~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~s----- 678 (828)
..|+.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+..+++
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 666543 344443322110 12345567777777665 45556666555 666665555541
Q ss_pred --------------------------------------------------------------------------------
Q 003348 679 -------------------------------------------------------------------------------- 678 (828)
Q Consensus 679 -------------------------------------------------------------------------------- 678 (828)
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence
Q ss_pred -----------------CCHHHHHHHHHHHHHchhcc-----hhHHHH-HHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003348 679 -----------------GTPRGKKDAATALFNLSIYH-----ENKARI-VQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 679 -----------------~~~~~~~~Al~aL~nLs~~~-----~n~~~i-v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
.+..+.++++.+|-||+... ..+..+ ..+.+.+.|++|| ..+..++..++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 12233446777777776621 223333 5577889999999 46788999999999999
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHccC------CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHH
Q 003348 735 ATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAK 807 (828)
Q Consensus 735 a~~~e~r~~i~~~g~I~~Lv~lL~s~------s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r 807 (828)
+.+..++..|. ..+++.|++.|... ++...-.++.+|+++...+..+...+++.+++++|+.|..+. +++.-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999999998 67899999999652 367888999999999999998999999999999999999886 46899
Q ss_pred HHHHHHHHHhhcccc
Q 003348 808 EKAQALLSYFRNQRH 822 (828)
Q Consensus 808 ~kA~~lL~~L~~~~~ 822 (828)
+.|..+|..|+.+.+
T Consensus 673 kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 673 KAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1.6e-12 Score=137.54 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=170.5
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.++.|+..|+ +.++.+|..|+..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 357899999999 5689999999999999877 56899999999999999999999999999999999999999998988
Q ss_pred HHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003348 621 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
.|-. +++.+++...+. +...+..++.+|.+|+..+++...+.. .++.++.||.+|+..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 8753 588888765554 568889999999999998888777754 6999999999999999999999999999999
Q ss_pred hhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCC
Q 003348 699 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~ 737 (828)
.+...++.++++..++.+++ ...++...++.+..||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999994 4577889999999999763
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.7e-11 Score=129.01 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=222.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCH
Q 003348 552 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI 628 (828)
Q Consensus 552 L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs-~~~~~k~~I~~~g~l 628 (828)
-.+++..+-.+++..|..+....++ +.++.+...++.+|.. ++.++....+..+..-+ .++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4467777888999999999887665 4566788889998853 56666666666665554 467899999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhccCcch----------HHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003348 629 EPLIHVLQT-GSPEARENAAATLFSLSVIEDN----------KIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 629 ~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~----------k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
+.+...|.. |...+...+.+++..|..+++. ...|+..|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977754 4456777888999988877663 46677788999999999987 78899999999999999
Q ss_pred cchhHHHHHHhCcHHHHHHhcCC-C----hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc--cCCHHHHHHHH
Q 003348 697 YHENKARIVQAGAVKHLVDLMDP-A----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA 769 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL~~-~----~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~--s~s~~~ke~Av 769 (828)
.++.+..+.+.|++..|++++++ + ..+...++.+|..|+.+...+..|++.|+.+.++.++. +.+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999932 2 33667899999999999999999999999999999885 47899999999
Q ss_pred HHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhccc
Q 003348 770 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 770 ~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~ 821 (828)
.++.-||-..+++...+++.|+-...++-+... ..-+++.|.+++|++..+.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888877765 3568899999999987653
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=5.2e-12 Score=133.64 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=170.6
Q ss_pred HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH
Q 003348 582 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 582 ~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
.+.+.++.|+.+|+. .|+.+++.|+.+|.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456778999999985 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003348 661 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 661 ~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
..|-. .++.+++.+.+. +..++..++++|.||+...+.+..+. +.++.++.+| ..+..+...++.+|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 477777765554 67899999999999999887766554 4799999998 56778889999999999999
Q ss_pred chhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhC
Q 003348 738 PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 738 ~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~ 778 (828)
+.....++..+++..++.++.. .+.....+++.+..|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999998999999999987 4778899999999999765
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.43 E-value=1.4e-12 Score=155.67 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCHHHHHH
Q 003348 557 LDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIEPLIH 633 (828)
Q Consensus 557 ~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~-~~k~~I~~~g~l~~Lv~ 633 (828)
-.+++.|.-.|.+|++.+..|+..+... |++..+|..|.+...+++...+.+|.||++. + +.|..+-+.|-+..|..
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3467889999999999999999988775 9999999999998889999999999999987 3 34666778899999887
Q ss_pred h-hcCCCHHHHHHHHHHHHHhccC-cchHHHHHhh-CChHHHHHhhcCC----CHHHHHHHHHHHHHchh----cchhHH
Q 003348 634 V-LQTGSPEARENAAATLFSLSVI-EDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKA 702 (828)
Q Consensus 634 l-L~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~-g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~----~~~n~~ 702 (828)
+ |...........+.+||||+.+ .+||..|... |++..||-+|... ...+.+.|-++|.|.+. ..+.++
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 5 4555566778889999999985 6899999886 9999999999754 56788899999999877 567778
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 703 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.+.+..++..|+..| +..-.++.++|++||||+. +++.++.+++.|+|+.|..++.+.+..+-+-++.+|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 888999999999999 5667789999999999987 88999999999999999999999999999999999999998875
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.36 E-value=2.5e-10 Score=133.27 Aligned_cols=278 Identities=16% Similarity=0.169 Sum_probs=223.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
..+..+.|...|.++++.+|..++..|.+++.++......+.+.+.++.++.+|.+++..+...|+.+|.+|+.++.+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 35678899999999999999999999999999887666777788999999999999999999999999999998888877
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003348 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.+...+.+..|..++...+..+|..+..++.+++.. ++.-..+...|+++.++..|++.+.-++.+|+.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 888888899999999998888999999999999864 5556666677999999999999899999999999999999999
Q ss_pred hHHHHHHhCcHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 700 NKARIVQAGAVKHLVDLM-D--PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~--~~~---~-v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+...+.+.|+++.|..++ + .++ . +.-..+...++++......-.-.-...+..|.+++.+.++..+..|..++
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 999999999999999998 2 222 1 22344466777777422211111123466677778889999999999999
Q ss_pred HHHhhCCHHhHHHH-HhC-C----CHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 773 LQLCTNSSRFCSMV-LQE-G----AVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~~~~~~~~~v-~~~-g----~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+|.... ....+ ... + ++........++...+|..+...|..+-.
T Consensus 315 g~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 315 GQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99997654 34444 333 2 35555556667778899999998888744
No 22
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3e-10 Score=115.24 Aligned_cols=79 Identities=35% Similarity=0.497 Sum_probs=74.6
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 003348 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 310 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~ 310 (828)
.+.++|+.++|.|+++||+|||+.|+|.||+|..|.+++..-+..+|+||.+|+..+++||++|+..|..|.+.|+|..
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 5678999999999999999999999999999999999999866779999999999999999999999999999998853
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.2e-09 Score=119.41 Aligned_cols=275 Identities=16% Similarity=0.217 Sum_probs=205.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..|..||+.|...+.+........|..|+-- .+|+..+.+.|.|..|+.+....+++++...+..|.|||++...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 56889999999988888888899999999884 48999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchh
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n 700 (828)
++..|.+|.|..+|.+.. -...|+..|+.+|.+++.|..+....+|+.+.+.+-++ +.++-.+.+....|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 999999999999997654 34568889999999999999999999999999887665 455555555555688888877
Q ss_pred HHHHHHhCcHHHHHHh------------c---------------------------CCChHHHHHHHHHHHHHhCCc---
Q 003348 701 KARIVQAGAVKHLVDL------------M---------------------------DPAAGMVDKAVAVLANLATIP--- 738 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~L------------L---------------------------~~~~~v~~~Al~~LanLa~~~--- 738 (828)
.+.+++..++..|++. + +.++...-+|+++|+||.-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 7666665455444331 1 112233446888888874311
Q ss_pred -----------------------------------------hhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 003348 739 -----------------------------------------DGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 775 (828)
Q Consensus 739 -----------------------------------------e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L 775 (828)
.+...+..++.|+.|+++|+. .+++..-+-..+.+++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 111222345567777777764 3444445555555666
Q ss_pred hhCCHHhHHHHHhC-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 776 CTNSSRFCSMVLQE-GAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 776 ~~~~~~~~~~v~~~-g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+. ..+..++++ ..-..|+.|+...+..+|+.+-.+|-.+..+
T Consensus 620 l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 6653 234445544 4556689999999999998888888777654
No 24
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.3e-11 Score=140.48 Aligned_cols=131 Identities=26% Similarity=0.343 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Q 003348 142 YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRM 218 (828)
Q Consensus 142 ~e~~~~~~~~~l~~~~~~~~~~~~~l~~i~~~l---~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (828)
...|.+.+. .|+|+|+.+.|......+ ++++...+ ++...|....+.....+...+.
T Consensus 803 ~~~F~~avA------~D~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee------------- 862 (943)
T KOG2042|consen 803 EPSFVEAVA------KDGRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEE------------- 862 (943)
T ss_pred chhHHHHHh------ccccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 556666554 689999999999666544 44433322 2233333322221111101111
Q ss_pred HHHHHHhhhhccCCCCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHH
Q 003348 219 HDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKA 297 (828)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~ 297 (828)
.-.++|++|..||+..+|+|||++| +|+|.||+.|++|+..+ .++|+||+||+.+++.||.+||.
T Consensus 863 -------------~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~ 928 (943)
T KOG2042|consen 863 -------------ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKA 928 (943)
T ss_pred -------------HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHH
Confidence 1124999999999999999999998 99999999999999976 78999999999999999999999
Q ss_pred HHHHHHHHc
Q 003348 298 LIANWCELN 306 (828)
Q Consensus 298 ~i~~~~~~~ 306 (828)
.|+.|..+.
T Consensus 929 kI~~~~~ek 937 (943)
T KOG2042|consen 929 KIRCWIKEK 937 (943)
T ss_pred HHHHHHHHh
Confidence 999997664
No 25
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.3e-10 Score=129.90 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHH---HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 003348 143 EQTSSLIKEAIRDQVDGVAPSSEILV---KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 219 (828)
Q Consensus 143 e~~~~~~~~~l~~~~~~~~~~~~~l~---~i~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (828)
-+|++.++ .|+++++.+.|+ +|.++..+.++..+ +|++.+-.-.|+.+..+..++.
T Consensus 788 s~FveaVA------~D~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeE-------------- 846 (929)
T COG5113 788 SKFVEAVA------SDKRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEE-------------- 846 (929)
T ss_pred HHHHHHHH------cccccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhh--------------
Confidence 45666554 688999999998 45566667777665 3344444433332222211111
Q ss_pred HHHHHhhhhccCCCCCCCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003348 220 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 220 ~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
+..+||++|..|++..+|+|||++| +|.|.||+.|..|+-.+ .|+|+.|.||+.++.+||-.||+.
T Consensus 847 ------------D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrek 913 (929)
T COG5113 847 ------------DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREK 913 (929)
T ss_pred ------------hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHH
Confidence 2456999999999999999999987 79999999999999986 789999999999999999999999
Q ss_pred HHHHHHHc
Q 003348 299 IANWCELN 306 (828)
Q Consensus 299 i~~~~~~~ 306 (828)
|-.|....
T Consensus 914 In~f~k~k 921 (929)
T COG5113 914 INRFYKCK 921 (929)
T ss_pred HHHHHhcc
Confidence 99986543
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.10 E-value=1e-08 Score=119.80 Aligned_cols=273 Identities=15% Similarity=0.127 Sum_probs=212.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHHcC
Q 003348 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN 626 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-k~~I~~~g 626 (828)
++..|.+.+.+.-..++..|..+.... .-... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 788888777776677788888776633 22222 457889999999999999999999999999877655 44455779
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-chhHHHHH
Q 003348 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIV 705 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~-~~n~~~iv 705 (828)
.++.++..|..++.++...|+.+|..|+..+..-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999887777787888899999999988888888899999999874 55666667
Q ss_pred HhCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC--CH-H---HHHHHHHHHHHHhhC
Q 003348 706 QAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA-R---GKENAAAALLQLCTN 778 (828)
Q Consensus 706 ~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~-~---~ke~Av~~L~~L~~~ 778 (828)
+.|+++.++..|+ ++.-++..|+.+|..|+..+.|...+.+.|+++.|+.++... ++ - .--..+....+++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 7999999999884 444566789999999999999999999999999999999652 33 0 111222344555554
Q ss_pred CHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcccccc
Q 003348 779 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 824 (828)
Q Consensus 779 ~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~~~~ 824 (828)
.+..... .-...+..|..++.++++..+..|...+..+....+|+
T Consensus 280 ~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 280 SPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred ChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 3321111 11345667778888899999999999999887665553
No 27
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=5.9e-11 Score=118.00 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.7
Q ss_pred CCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhc---------------CCCCCCCCCCcCCCCCCCCcH
Q 003348 233 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY 293 (828)
Q Consensus 233 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pN~ 293 (828)
.++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456688999999999999999999999999999999852 234699999999999999985
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=1.9e-09 Score=100.05 Aligned_cols=116 Identities=30% Similarity=0.415 Sum_probs=106.0
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-
Q 003348 581 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED- 658 (828)
Q Consensus 581 i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e- 658 (828)
+.+.|+++.|+.+|.+.+..+++.++.+|.+++.+ +.....+.+.|+++.++.+|.+++..++..++++|.+|+....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56889999999999999999999999999999987 6788888889999999999999999999999999999998764
Q ss_pred hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 659 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 659 ~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
....+...|+++.|+.+|.+.+..+++.|+++|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45666777999999999999999999999999999863
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.08 E-value=6.6e-11 Score=89.77 Aligned_cols=39 Identities=31% Similarity=0.777 Sum_probs=31.5
Q ss_pred ccCccccccCCeecCCCcchhHHHHHHHHhcCC---CCCCCC
Q 003348 242 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~---~~cP~t 280 (828)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 359986
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.07 E-value=3.5e-09 Score=98.18 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=107.6
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 703 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 703 ~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.+++.|+++.|+++| +.+..++..++.+|++++.. ++.+..+.+.|+++.+++++.+.++.++..|+++|.+|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 56678999999999999996 7888899999999999999999999999999999999999988
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.....+.+.|+++.|..++..++.++++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888889999999999999999999999999999875
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.04 E-value=8.7e-09 Score=111.89 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=213.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----CC---HHHHHHHHHHHHHhhc
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s----~d---~~v~e~A~~aL~nLs~ 614 (828)
.+.+..|.+...|++.++-.+..+.|.++++.+.++|..+.+.|+-..++..|+. ++ ++....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4566777777778888999999999999999999999999999997777766653 33 4566677888888876
Q ss_pred C-CccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-cch-HHHHHhhCChHHHHHhhcCC-CHHHHHHHH
Q 003348 615 N-DNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDN-KIKIGRSGAIGPLVDLLGNG-TPRGKKDAA 688 (828)
Q Consensus 615 ~-~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~-~e~-k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al 688 (828)
+ +.-+..+++.|.++.|...+.-+ +.+..+......+||.+. .++ +....+......++++|... .+.......
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 5 45688899999999999888654 456666666666666542 222 34444556677788888765 566777788
Q ss_pred HHHHHchhcchhHHHHHHhCcHHHHHHhcCC--C----h---HHHHHHHHHHHHHhCCchhHHHHHhCC-cHHHHHHHHc
Q 003348 689 TALFNLSIYHENKARIVQAGAVKHLVDLMDP--A----A---GMVDKAVAVLANLATIPDGRVAIGQEN-GIPVLVEVVE 758 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~--~----~---~v~~~Al~~LanLa~~~e~r~~i~~~g-~I~~Lv~lL~ 758 (828)
..|...+.++..+..+++.|.+..+++++.. . . .....++.....|....+.-+.+...+ ++..++..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 8899999999999999999999999998821 1 1 122345555555666666666666666 7899999999
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhc
Q 003348 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-----GTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~-----g~~r~r~kA~~lL~~L~~ 819 (828)
+.+......++-++.|+++.+. .|..+++.+.+..|+.++.. |+-+.+..+..+||+|--
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 9999999999999999999876 78888899999999998865 456788889999998853
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.04 E-value=4.1e-08 Score=110.62 Aligned_cols=273 Identities=15% Similarity=0.110 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 003348 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 545 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
...++..|..++..++..|+..|..|...+..+.......-.+..|...|.+. +...+..|+.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566688888888999999999988765443211111111334555566543 57788889999999999999999999
Q ss_pred HcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcc--
Q 003348 624 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~-- 698 (828)
+.++++.|+.+|+.. +...+.+++-++|-||..++........+.|+.|+++++.. ...+.+.++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999763 46899999999999999888777666679999999999876 6789999999999998832
Q ss_pred -----hhHHHHHHhCcHHHHHHhcC---CChHHHHHHH-------HHHHHHhCCc------------------------h
Q 003348 699 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIP------------------------D 739 (828)
Q Consensus 699 -----~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al-------~~LanLa~~~------------------------e 739 (828)
.....|+..|+.+.+-.|.. .++++.+..- ..+..+++.+ +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456777888776655542 3444443221 1122222221 2
Q ss_pred hHHHHHhCC--cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 740 GRVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 740 ~r~~i~~~g--~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
+...+-+.+ .+..|+++|. +.++.+..-||.=|..++++.|..+..+-+.|+=..++.|+.+.++++|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233444444 3789999995 5678888889999999999988888888889999999999999999999999998876
Q ss_pred h
Q 003348 817 F 817 (828)
Q Consensus 817 L 817 (828)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=3.1e-10 Score=125.84 Aligned_cols=69 Identities=17% Similarity=0.419 Sum_probs=63.3
Q ss_pred CCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003348 235 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 235 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
.+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|+.|.++|+.|..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 355789999999999999999999999999999999864 579999999998899999999999999965
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.9e-08 Score=108.86 Aligned_cols=257 Identities=22% Similarity=0.258 Sum_probs=194.3
Q ss_pred hHHHHHHHHhcCC---CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003348 543 TQVRKLVEDLKST---SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~---~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
..+..+.+.++.. .....+-|+..|.+||.. ...-..+.....|..||..|+.++..+..-.+..|..||+..+||
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK 338 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK 338 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch
Confidence 3445555555421 122334577888899883 345566777799999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
..+.+.|.+..|+++.....++.+...+..|+|||.+...+..++..|.+|.|+.+|.+.+. .-.|+..|+.|+.+.+
T Consensus 339 ~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 339 IVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 99999999999999999999999999999999999999999999999999999999987653 3357788999999999
Q ss_pred hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHH------------Hcc------
Q 003348 700 NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------VEL------ 759 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~l------------L~s------ 759 (828)
.+..+....+|+.+++.+ ..+.++--..++.--|||.+..+.+.+++..++..|++. ++.
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg 496 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEG 496 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccc
Confidence 999999999999999965 333333333444446677666555555554444444332 211
Q ss_pred --------------------CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003348 760 --------------------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 760 --------------------~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
.++.---.+.++|.+|.-.+-.....+...+.+|.+-..++.|
T Consensus 497 ~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 497 ATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence 1222333567777777766655666777788999998888876
No 35
>PRK09687 putative lyase; Provisional
Probab=98.95 E-value=5.6e-08 Score=105.04 Aligned_cols=222 Identities=18% Similarity=0.108 Sum_probs=150.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~l-L~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..+..+.+.+++.++.++..|++.|..|..... . ...+++.|..+ +.++++.|+..|+.+|.++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 455666677777777778788877777744211 0 12356677766 55667788888888887774322111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
...++..+...+.+.+..+|..++.+|..+. ...+++.|+.+|++.+..++..|+.+|..+....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 1123555666677777788888888776542 3357888888888888888888888888873211
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..+++.|+.+| +.+..++..|+..|..+- ...+++.|++.+.++. .+..|+.+|..+..
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--- 250 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRK----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD--- 250 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccC----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence 24566777777 567777888888877643 2356888888887765 44556666666543
Q ss_pred HhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHHHH
Q 003348 781 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLS 815 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~lL~ 815 (828)
..+++.|..++. .++.+++.+|.+.|+
T Consensus 251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 146899999997 778999999998875
No 36
>PRK09687 putative lyase; Provisional
Probab=98.89 E-value=1.2e-07 Score=102.40 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=168.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..|++.|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+++|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 357899999999999999999999987643 34678888999999999999999999998543221
Q ss_pred HHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 623 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
...+++.|..+ ++..+..++..|+.+|.++....... ...++..+...+.+.+..++..|+.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 22456777766 67788999999999999985422111 1134666778888889999999999997652
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
...+++.|+.+| +++..++..|+..|..+... ...+++.|+.++.+.++.++..|+..|..+-. +
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence 344788999999 67788999999999988432 12457889999999999999999999987432 2
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
.+++.|+..++++.. +..|...|..
T Consensus 223 ---------~av~~Li~~L~~~~~--~~~a~~ALg~ 247 (280)
T PRK09687 223 ---------RVLSVLIKELKKGTV--GDLIIEAAGE 247 (280)
T ss_pred ---------hHHHHHHHHHcCCch--HHHHHHHHHh
Confidence 467888888887763 3344444443
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.2e-07 Score=105.08 Aligned_cols=257 Identities=18% Similarity=0.154 Sum_probs=198.5
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC-Cc
Q 003348 542 ETQVRKLVEDLKST-SLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~-~~ 617 (828)
..-+++|++.|+.. ++..|.+|+.+|. .|...+++.-..+--.-+||.|+.+|+++ +.+++..|+++|.+|+.- +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788999999965 8889999999998 45555555544444447899999999885 799999999999999754 77
Q ss_pred cHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 618 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
....+++.++||.|+.-|. -....+.+.++.+|..|+..+ -..|.+.|++...+.+|.--+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999997654 456889999999999998643 3567788999999999988889999999999999988
Q ss_pred c--chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC----CchhHHHHHhCCcHHHHHHHHccC----CHHHH
Q 003348 697 Y--HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK 765 (828)
Q Consensus 697 ~--~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~----s~~~k 765 (828)
. .+.-..+ ..++|.|..+| ..+...++.++-.+..++. .++--+.+...+.|....++|.-. +....
T Consensus 324 si~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3 3333323 34789999999 3555556666655555554 444557788889999999888532 33445
Q ss_pred HHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC
Q 003348 766 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 766 e~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
-..+..|..+|++.+-....+.+.++...|..+++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5566777888888888888888999999999988754
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=6.4e-08 Score=106.52 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=168.2
Q ss_pred HHHHhhccChhhHHHHHhc---CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCC-ccHHHHHH------cCCHHHHHH
Q 003348 566 ELRLLAKHNMDNRMVIANC---GAINILVDMLHS--SETKIQENAVTALLNLSIND-NNKSAIAN------ANAIEPLIH 633 (828)
Q Consensus 566 ~L~~La~~s~~nr~~i~~~---GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~-~~k~~I~~------~g~l~~Lv~ 633 (828)
.|..+-+...+.|..+.+. +....++.+|+. .++++....+..+..+..++ .....+.. ...+.++++
T Consensus 33 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ 112 (312)
T PF03224_consen 33 LIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK 112 (312)
T ss_dssp HHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH
Confidence 3333333334444444443 346666676654 58889999999999986554 44444443 136888999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHHchhcchhHHHHHHhCc
Q 003348 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGA 709 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~ 709 (828)
++.+++..++..|+.+|..|......+..-...+.++.++++|.+. +...+..|+.+|.+|...++.|..+.+.|+
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 9999999999999999999987666555444466778888887763 445678999999999999999999999999
Q ss_pred HHHHHHhc------CCC--hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH
Q 003348 710 VKHLVDLM------DPA--AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 710 V~~Ll~LL------~~~--~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~ 780 (828)
++.|+.+| ... ..+.-+++-+++.|+.+++....+.+.+.|+.|+++++. ..+++..-++++|.||+....
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 99999998 222 345678999999999999999999998899999999975 678999999999999998876
Q ss_pred H-hHHHHHhCCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 003348 781 R-FCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 814 (828)
Q Consensus 781 ~-~~~~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL 814 (828)
+ ....++..|+++.|-.|.... ++...+--..+-
T Consensus 273 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 273 KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5 566677776666666665543 566665544443
No 39
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.85 E-value=1.7e-07 Score=102.10 Aligned_cols=275 Identities=15% Similarity=0.123 Sum_probs=205.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CC-------HHHHHHHHHHHHHhhc
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTALLNLSI 614 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d-------~~v~e~A~~aL~nLs~ 614 (828)
..+..|++.+.+.-.+.....+.++..-+.+++..+..+++.|.+..++.++.. .+ -.....++....-|..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 345566666654322222333344444444477888999999999999999865 21 1122334444444455
Q ss_pred CCccHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-----CCHHHHHHHH
Q 003348 615 NDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKDAA 688 (828)
Q Consensus 615 ~~~~k~~I~~~g-~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-----~~~~~~~~Al 688 (828)
.++....+...+ .+.-++..+.+.+....-.++-+|.|++..|++...+++.+++..|+++|.. ++.+.+.+++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 566655565555 8889999999999999999999999999999999999999999999999853 4789999999
Q ss_pred HHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhC-CcHHHHHHHHccCCHH-H
Q 003348 689 TALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVELGSAR-G 764 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~-g~I~~Lv~lL~s~s~~-~ 764 (828)
.||.||.....|+.+++.+|+++.++..+ ...++++-.-++.|..+....+ ....+... ..+..|++.-++.+-. +
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 99999999999999999999999999988 4667888899999998877554 33344433 3588888888876544 6
Q ss_pred HHHHHHHHHHHhhCC--HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 765 KENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 765 ke~Av~~L~~L~~~~--~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.-..-..|..+..++ .+....+.+.|++..++.++...+-..+..|.-.|..+
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 667777888888874 34556677889999999999888777777666655544
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.84 E-value=1.5e-07 Score=103.68 Aligned_cols=219 Identities=19% Similarity=0.169 Sum_probs=163.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~------GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.|++.+ +.+.+.....+..+..+...++.....+.+. .....++.++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 5678888899999999988887666666552 367888899999999999999999999976544333
Q ss_pred HHHHcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh------cCC-CHHHHHHHHH
Q 003348 621 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL------GNG-TPRGKKDAAT 689 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s----~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL------~s~-~~~~~~~Al~ 689 (828)
.....+.++.++..|++ .+.+.+..++.+|.+|...+++|..+.+.++++.|+++| .+. +.+.+..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33235667888877765 334567899999999999999999999999999999999 222 5789999999
Q ss_pred HHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch--hHHHHHhCCcHHHHHHHHcc--CCHH
Q 003348 690 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR 763 (828)
Q Consensus 690 aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e--~r~~i~~~g~I~~Lv~lL~s--~s~~ 763 (828)
+++-|+.+++....+...+.|+.|++++ ...+.++.-++++|.||+.... ....|+..|+++.+-.+... .+++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999998 5678899999999999999666 77888887777776666644 4555
Q ss_pred HHH
Q 003348 764 GKE 766 (828)
Q Consensus 764 ~ke 766 (828)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 41
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-06 Score=98.84 Aligned_cols=258 Identities=18% Similarity=0.242 Sum_probs=199.5
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCc-
Q 003348 542 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~- 617 (828)
...|+.|+..+.+. -.+.++.|++.|..+++ ..|..++. -|++.|+..|.. .|+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999999855 57889999999999998 57777654 568888888876 489999999999999965542
Q ss_pred ------cH----------HHHH-HcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHHhh-CChHHHHHhhc
Q 003348 618 ------NK----------SAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRS-GAIGPLVDLLG 677 (828)
Q Consensus 618 ------~k----------~~I~-~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~~~-g~I~~Lv~LL~ 677 (828)
.+ ..+. ..+.|..|+..+...+-.+|.++...|.+|-. ..+.+..+... -+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 1222 34789999999999999999999999999865 34566666665 88999999999
Q ss_pred CCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcCC-----ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcH
Q 003348 678 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI 750 (828)
Q Consensus 678 s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~~-----~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I 750 (828)
+....++..|+..|..|+.+..+.++++. .++...|+.+++. ..-+++.|+.+|-||.. +..++..+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998888888776 8899999999932 23578999999999998 55667777778889
Q ss_pred HHHHHHHcc---CCH----------HHHHHHHHHHHHHhhCC-----H-HhHHHHHhCCCHHHHHHhhcCCC
Q 003348 751 PVLVEVVEL---GSA----------RGKENAAAALLQLCTNS-----S-RFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 751 ~~Lv~lL~s---~s~----------~~ke~Av~~L~~L~~~~-----~-~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
|.|.++|.. ++. ..-..|.-++..+..-+ . .++..+.+.+++..|+.++.+..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 999988842 331 11223444455554422 1 23356677899999999988874
No 42
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.74 E-value=3.9e-09 Score=85.40 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=31.5
Q ss_pred CcccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCC
Q 003348 238 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTR 281 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~ 281 (828)
-.|.||||+..|+|||. ..|||+|||.+|.+|+..+ ...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 46899999999999999 5899999999999999543 34599965
No 43
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=6.8e-09 Score=77.61 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=33.3
Q ss_pred ccCccccccCC-eecCCCcchhHHHHHHHHhcCCCCCCCC
Q 003348 242 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t 280 (828)
||||.+.+.|| |+++|||+||+.||++|++. +.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5789987
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=3.3e-06 Score=105.54 Aligned_cols=224 Identities=22% Similarity=0.207 Sum_probs=144.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..++.|++.|.+.++.+|..|+..|..+. ..++++.|+.+|.++++.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 46789999999999999999999998764 2357899999999999999999999997773211
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc-----
Q 003348 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----- 697 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~----- 697 (828)
...+.|...|.+.++.++..|+.+|..+.. +....|+.+|.+.++.++..|+.+|..+-..
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~ 749 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAG 749 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHH
Confidence 122456666666677777777766665421 1123344455555555555555555443100
Q ss_pred ------chhHHHHH---------HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC
Q 003348 698 ------HENKARIV---------QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 698 ------~~n~~~iv---------~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
.+.+...+ ..+.++.|+.++ +++..++..|+..|..+... ...++.++..+.+.+
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d 820 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASA 820 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCC
Confidence 00000000 111245566666 45555666666666655321 112345667777777
Q ss_pred HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 762 ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 762 ~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
+.+|..|+.+|..+.. ...++.|..++.+.+..+|..|...|..+
T Consensus 821 ~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 821 WQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7777777777766532 23569999999999999999999999876
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=5.6e-06 Score=103.57 Aligned_cols=228 Identities=21% Similarity=0.175 Sum_probs=152.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-----
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----- 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~----- 616 (828)
...++.|++.|++.++.++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 457889999999999999999998887774311 12245556666666666666666665442110
Q ss_pred ------cc--HHHH----HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHH
Q 003348 617 ------NN--KSAI----ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 684 (828)
Q Consensus 617 ------~~--k~~I----~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~ 684 (828)
+. +... ...+..+.|..+|.+++.++|..++.+|..+... ....++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 00 0000 0012223445555555555665555555554321 11346888888888889999
Q ss_pred HHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHH
Q 003348 685 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 685 ~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 763 (828)
..|+.+|.++.... .+++.|+..| +++..++..|+.+|..+. ....++.|+.+|.+.+..
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHH
Confidence 99999988873321 1234577777 667778888999998654 234579999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
+|..|+.+|..+- .++ ...+.|...+.+.++.+|+.|...|..
T Consensus 854 VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999998861 222 247778889999999999999998863
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.55 E-value=3.2e-08 Score=75.16 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=23.4
Q ss_pred ccCccccccC----CeecCCCcchhHHHHHHHHhcC---CCCCC
Q 003348 242 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP 278 (828)
Q Consensus 242 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~---~~~cP 278 (828)
||||.+ |.+ |++++|||+||+.||++++..+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 33577
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.54 E-value=1e-05 Score=91.43 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHH
Q 003348 544 QVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 544 ~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+..|...+++. +...+.-|+.+|..|.+. +..|..+.+.++++.|+.+|+.. +.+++.+++-++.-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 455666777643 456677788999999885 47898898999999999999763 56899999999999999987666
Q ss_pred HHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc-------chHHHHHhhCChHHHHHhhcCC---CHHHHHHHH-
Q 003348 621 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIE-------DNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAA- 688 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~~-------e~k~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al- 688 (828)
.....+.|+.|+.+++... ..+..-++++|.||.... .....++..|.++ ++..|... ++++..+--
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHH
Confidence 6667799999999998764 668889999999997632 1234455556555 55555432 333322111
Q ss_pred ------HHHHHchhc------------------------chhHHHHHHhC--cHHHHHHhcC--CChHHHHHHHHHHHHH
Q 003348 689 ------TALFNLSIY------------------------HENKARIVQAG--AVKHLVDLMD--PAAGMVDKAVAVLANL 734 (828)
Q Consensus 689 ------~aL~nLs~~------------------------~~n~~~iv~~G--~V~~Ll~LL~--~~~~v~~~Al~~LanL 734 (828)
.-+..|++. .+|..++-+.+ ++..|+++|+ .++.+..-||.=++.+
T Consensus 302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~ 381 (429)
T cd00256 302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY 381 (429)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence 122233321 34555565533 6788888883 4455566677778888
Q ss_pred hC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 735 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 735 a~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+. +|.||..+-+.|+=..++++|.+.+++++.+|..++..|..+
T Consensus 382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88 889999998999999999999999999999999999877543
No 48
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.51 E-value=4.8e-08 Score=102.65 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=59.6
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
+-++|-||.+.|+-||++|||||||--||.+|+... ..||.|..+++...|.-|+.|-++|+.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHH
Confidence 457999999999999999999999999999999875 5699999999999999999999999877
No 49
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.50 E-value=1.2e-06 Score=82.05 Aligned_cols=123 Identities=21% Similarity=0.262 Sum_probs=109.6
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.+.+..|+...+ ..+.+.|.+.+..|.++++ ++.|...+.+.+++..++..|..++..+.+.++..|+|++.++.|+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 367888888887 5688899999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHh
Q 003348 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGR 665 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~ 665 (828)
.|.++++++.++..|.++.......|+.+|..|+.... .+..+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999999999999999999986443 3444433
No 50
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.50 E-value=8.2e-08 Score=72.51 Aligned_cols=39 Identities=36% Similarity=0.941 Sum_probs=35.9
Q ss_pred ccCccccccCCe-ecCCCcchhHHHHHHHHh-cCCCCCCCC
Q 003348 242 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~-~~~~~cP~t 280 (828)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 555679987
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=8.5e-06 Score=88.35 Aligned_cols=180 Identities=22% Similarity=0.193 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHh
Q 003348 638 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 716 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~L 716 (828)
.+.+-++.|..-|..+..+-++...+...|++..++.++.+.+..++..|+++|...+. ++..+..+++.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35778888888888888888889999999999999999999999999999999999988 56677889999999999999
Q ss_pred cC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCC
Q 003348 717 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791 (828)
Q Consensus 717 L~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~ 791 (828)
|. ....+..+|+.++..|.. ++.|...+...+|...|...+.+ .+.+.+..|+..+..|..........+-..+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 93 445667899999999998 77889999999999999999988 67889999999999999887766666666777
Q ss_pred HHHHHHhhcCCCHHHHHHHHH-HHHHh
Q 003348 792 VPPLVALSQSGTPRAKEKAQA-LLSYF 817 (828)
Q Consensus 792 v~~L~~LL~~g~~r~r~kA~~-lL~~L 817 (828)
...+..+..+....+++.|.. +|..+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 788888888888888877766 33333
No 52
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.5e-08 Score=97.60 Aligned_cols=57 Identities=25% Similarity=0.566 Sum_probs=51.1
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCCCCCCCCcHH
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHTTLIPNYT 294 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pN~~ 294 (828)
..|-|-||++.-+|||++.|||-||=.||.+|+... ...||+|+..++.+.++|-|.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 479999999999999999999999999999999853 334999999999999999753
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.2e-06 Score=97.04 Aligned_cols=213 Identities=16% Similarity=0.170 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCcc
Q 003348 541 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
++.+|+.|+.+|+ ..+.+++..|+++|..|+..-|.....+++.++||.|+.-|.. +--++.|+++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 4678999999999 5589999999999999999888888889999999999986644 67889999999999998643
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003348 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
-..|..+|+|-..+..|.--+..++..|+++..|++.. ++... + ..++|.|..+|+..+.+..+.++.++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 36788999999999999877888999999999998762 22222 2 367899999999999999999999999887
Q ss_pred h----cchhHHHHHHhCcHHHHHHhcCCC-----hHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc
Q 003348 696 I----YHENKARIVQAGAVKHLVDLMDPA-----AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 758 (828)
Q Consensus 696 ~----~~~n~~~iv~~G~V~~Ll~LL~~~-----~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~ 758 (828)
. .++--.++...|.|.....||.-. ..+-...+..|..+|+ ++.....+...++...|..+|.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 6 233336678899999999988322 2334456677777777 5888888888888888888874
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.45 E-value=2.2e-05 Score=86.27 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=198.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH----HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHH
Q 003348 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN----ILVDMLHS-SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~----~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
...+.+|..++.-....+.+.|..++.-.... .+.+... .|-..+.+ .+.+....|+.+|--+...++.|.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 45677777777777777888888877643221 1111222 22333444 567777889999988888899999
Q ss_pred HHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhc
Q 003348 621 AIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~ 697 (828)
.++.++++..++..|.+ .+..++....-++|-|+.++.....+...+.|+.|.+++++. ...+.+.++.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998843 368899999999999999988888886669999999999987 578999999999999885
Q ss_pred c-------hhHHHHHHhCcHHHHHHhcC---CChHHHHHHHH-------HHHHHhCCch---------------------
Q 003348 698 H-------ENKARIVQAGAVKHLVDLMD---PAAGMVDKAVA-------VLANLATIPD--------------------- 739 (828)
Q Consensus 698 ~-------~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al~-------~LanLa~~~e--------------------- 739 (828)
. +....|+..++.+.+-.|.. +++++++..-. -...|++..+
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 5 44456677777666554442 34444433221 1222333222
Q ss_pred ---hHHHHHhCC--cHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHH
Q 003348 740 ---GRVAIGQEN--GIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 813 (828)
Q Consensus 740 ---~r~~i~~~g--~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~l 813 (828)
+...+-+.+ .+..|+++|+. .+|..---||.=+....+..|+....+.+.||=+.+++|+.+.++++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 222333333 58899999986 458888889999999999999999999999999999999999999999999887
Q ss_pred HHHh
Q 003348 814 LSYF 817 (828)
Q Consensus 814 L~~L 817 (828)
+..|
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 7755
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=6.7e-05 Score=79.50 Aligned_cols=270 Identities=17% Similarity=0.181 Sum_probs=189.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
....|++++.+.+|.++..|+..+..|+.. ..+..... .-.++.|..++...++ .+.|+++|.|++.++.-++.+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 456789999999999999999999999885 33443332 3678888898877655 678999999999988877777
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-------hCChHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 003348 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TP-RGKKDAATALFN 693 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-------~g~I~~Lv~LL~s~-~~-~~~~~Al~aL~n 693 (828)
.+. .+..+++.+-++........+.+|.||+..++....+.. .|.+...+.....+ +. .-..+-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 766 778888888877666777788999999997765444322 34455555555544 22 334466678889
Q ss_pred chhcchhHHHHHHhCcHHH--HHHhcCCChHHH-HHHHHHHHHHhCCchhHHHHHhCC--cHHHHH--------------
Q 003348 694 LSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV-------------- 754 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~--Ll~LL~~~~~v~-~~Al~~LanLa~~~e~r~~i~~~g--~I~~Lv-------------- 754 (828)
|+.....|..+.+...++. |+.+-+.+..++ ...+++|.|.|........+++.+ .+|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999999988887664332 222224333444 346899999999777776666533 244433
Q ss_pred -------HHH-----ccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003348 755 -------EVV-----ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 755 -------~lL-----~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
+++ +..++.++..-+.+|..||.... .++.+...|+.+.|-++-... ++.+++++-.+..+|-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 222 12467788899999999998654 566776777776666664443 57788888888887766
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.42 E-value=1.6e-07 Score=74.24 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.7
Q ss_pred CcccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
+++.|+||++-+.++++.||||. ||..|+.+|+.. ..+||+||++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 477999999875
No 57
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.41 E-value=4.2e-07 Score=94.63 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=41.5
Q ss_pred CCCcccccCccccccCC--------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 236 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
..++..||||++.+.+| |+.+|||+||+.||.+|+.. ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 45678999999987764 56789999999999999986 468999998875
No 58
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.6e-05 Score=86.29 Aligned_cols=184 Identities=19% Similarity=0.186 Sum_probs=154.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHH
Q 003348 596 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVD 674 (828)
Q Consensus 596 s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~ 674 (828)
+.+.+-++.|+.-|..+..+-+|...+...|++.+++..|++++.++|+.|+++|...+. ++..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 346777788888888888888888999999999999999999999999999999999987 5778889999999999999
Q ss_pred hhcCC-CHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCc-hhHHHHHhCC
Q 003348 675 LLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIP-DGRVAIGQEN 748 (828)
Q Consensus 675 LL~s~-~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g 748 (828)
.|.+. +..++..|+.|+.+|-. +......+...++...|.+.+ + .+..++.+++..+..|.... ..+..+...+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99866 56788999999999988 556778889999999999999 3 45667889999999988733 3444445566
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
....++.+....+..+.+.|+.+++.+...-
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6777777888889999999999998877653
No 59
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.40 E-value=7.1e-08 Score=78.30 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=33.5
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHH
Q 003348 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 299 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i 299 (828)
-++|++|.++|++||. ..|.|+||+.||.+.+.. .||+|+.|-...++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4789999999999997 589999999999886653 399999999999999999998876
No 60
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.5e-07 Score=100.29 Aligned_cols=70 Identities=26% Similarity=0.569 Sum_probs=60.9
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 308 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~ 308 (828)
..+++.||||++.|++|++++|||+||+.||..++. +...||.|+. . ...+.||..+.++++.+...+..
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999999 5567999996 2 22788999999999999877644
No 61
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.9e-07 Score=90.62 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=45.1
Q ss_pred cccccCccccccC--CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003348 239 DFCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 239 ~f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
-|.||||++-+.. ||.+.|||.||+.||+..++.+ .+||.|++.++++++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3999999988876 4557899999999999999987 56999999999887765
No 62
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.35 E-value=2.3e-05 Score=92.20 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=170.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
-.+..+.+.|.++++.++..|++.|.++.. ++-.. -.++.+..+|.++++.|+..|+.++..+..... ..+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~ 149 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLV 149 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHH
Confidence 467788899999999999999999999873 22222 257888899999999999999999998853311 112
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHh-ccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 623 ANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nL-S~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|..++...++-.+...+.+|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 222 588899999888999999999999988 2111111 1 11244556666667778888888888888887744332
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..- ...++.+..++ +.+..++-.|+.++..+...+. .-..+++.|+.++.+.++.++..++..|..++...+
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 211 55666777766 3456667777777777776555 223457778888887788888888888888887652
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+ . .....+..+..+.+..+|.+|..+|..+..
T Consensus 300 ---~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 300 ---PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ---hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 222 1 222333334446667777777777766654
No 63
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=4.3e-05 Score=89.91 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=157.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..++.+.+.+.++++.+|+.|+.++..+.+.+++. +... .++.|..+|.+.++.++..|+.++..+..++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence 456788889999999999999999999998876543 2333 69999999999999999999999988811111100
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
-.-...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 111233455555566777888888888888776543322210 3456777777777777777777777777665444
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCC
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.-..+++.|..+| +++..++-.++..|..++... ...+. .....+..+. +.+..++..++.+|..++...
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 4456667777777 455567777777777777643 22222 2222233444 567777777777777777532
Q ss_pred HHhHHHHHhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q 003348 780 SRFCSMVLQEGAVPPLVALS-QSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL-~~g~~r~r~kA~~lL~~L 817 (828)
.... +++.|...+ ...+...++.+...+..+
T Consensus 336 --n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~l 367 (526)
T PF01602_consen 336 --NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDL 367 (526)
T ss_dssp --HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred --chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 2222 344455555 222444555544444433
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.27 E-value=2.4e-07 Score=100.77 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=65.7
Q ss_pred ccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 003348 240 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTAS 318 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~~~~~~~~~~~~~~~ 318 (828)
|.|.|++++.++||+-+ +||.|||+-|++|+.+. .+||+|+++|+.++|+|-. -.....|+|+...+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~Ik-----------~~~~v~pk~~satS 68 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEIK-----------VPAQVRPKPPSATS 68 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeecc-----------ccccccCCCCCccc
Confidence 57999999999999975 99999999999999976 5799999999999998852 23446678877777
Q ss_pred CCCCCCcccccC
Q 003348 319 LNQPSPLFVHAD 330 (828)
Q Consensus 319 ~~~~~~~~~~~~ 330 (828)
+ |.++..+||
T Consensus 69 I--PalL~~lQd 78 (506)
T KOG0289|consen 69 I--PALLKTLQD 78 (506)
T ss_pred h--HHHHHHHHH
Confidence 6 889999998
No 65
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.26 E-value=4.9e-07 Score=93.29 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 304 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~~~ 304 (828)
-++|-||.+.++-|++++||||||.-||.+|+... ..||+|+.+.....+.-+..++..++.|..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 47899999999999999999999999999999875 669999999998888889888988888743
No 66
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.20 E-value=1.4e-06 Score=66.32 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=39.1
Q ss_pred cccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 241 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
.||||.+.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998667899998753
No 67
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.19 E-value=6.7e-07 Score=68.69 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=33.7
Q ss_pred cccCcccccc---CCeecCCCcchhHHHHHHHHhcCCCCCCCCC
Q 003348 241 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281 (828)
Q Consensus 241 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 281 (828)
.||||++-|. .++.++|||.|++.||.+|++.. .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999984 45568999999999999999985 6899996
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.18 E-value=9.1e-05 Score=81.71 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=185.0
Q ss_pred hhHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-Cc
Q 003348 542 ETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-DN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~--q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~-~~ 617 (828)
.+.+..|++++.+++.+. +.+|.+.|-.+.. .+||..++..| ...++.+-+ .+.++.+...+.+|.++-.+ ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 567789999999988776 6788888877655 47999998876 344443332 34678888899999999877 44
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc--chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003348 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
....+++.|+++.++-..+..++.+..+++.+|.|++.+. +.+..|++..+-+-|..|-.+.+.-.+..||.+++-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 5667888999999999898888999999999999998753 56788888888888888887778889999999999999
Q ss_pred hcchhHHHHHHhCcH---HHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 696 IYHENKARIVQAGAV---KHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 696 ~~~~n~~~iv~~G~V---~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
.+.+.-..+-+.|.+ .+++..+++..-.++ + .....|+ ...-++.|+.+|.+.-.+.+--++.-+
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD-~-------hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFARD-A-------HDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhhh-h-------hhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 998877766666644 444444444321111 0 0000110 012377888888855444444443333
Q ss_pred HHHhh-CCHH-hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 773 LQLCT-NSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~-~~~~-~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..=+. ...+ ....+-+-|+|+.|.++..+.+.-..+-|.+.|+.+-.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 22221 1112 22344456999999999998887788888889988755
No 69
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.17 E-value=1.5e-05 Score=74.83 Aligned_cols=147 Identities=20% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHH
Q 003348 626 NAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI 704 (828)
Q Consensus 626 g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i 704 (828)
+.+..|+.-.. ..+.+.++...+-|.|.+.++.|-..+.+..++...++-|...+...+..++..|+|+|.++.|+..|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 45666665444 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
++++++|.++..+ ++...++..|+..|..|+... .-|..+....++..+.+.-.+.+...+.-|-..|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999888 566778888999999999843 4466676655555555554444444444444444
No 70
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.12 E-value=7.4e-05 Score=86.02 Aligned_cols=273 Identities=13% Similarity=0.108 Sum_probs=175.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhh----H-HHHHhcC--cH--HHHHHHHcCCCHHHH--HHHHHHHHHhh-c
Q 003348 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDN----R-MVIANCG--AI--NILVDMLHSSETKIQ--ENAVTALLNLS-I 614 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n----r-~~i~~~G--aI--~~Lv~lL~s~d~~v~--e~A~~aL~nLs-~ 614 (828)
.+-++++.+....+..++.+|..+...+-.. . ..+.+.| -+ -..+.+.. +|.+. ..++..-+.++ .
T Consensus 236 ~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~--~P~~s~l~~~~~l~c~~a~~ 313 (678)
T KOG1293|consen 236 VVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN--DPGLSTLDHTNVLFCILARF 313 (678)
T ss_pred hhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec--CCceeehhhhhhhHHHHHHH
Confidence 4555566777777788888887776644110 0 1111222 00 00111111 22221 11222222222 1
Q ss_pred CCccHHHHHHcCCHHHHHHhhcCC------CHHHHHHHHHHHHHhccC-----cchHHHHHhhCChHHHHHhhcCCCHHH
Q 003348 615 NDNNKSAIANANAIEPLIHVLQTG------SPEARENAAATLFSLSVI-----EDNKIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 615 ~~~~k~~I~~~g~l~~Lv~lL~s~------~~e~~~~Aa~aL~nLS~~-----~e~k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
-..++....+...++.++++|..+ .++.+.-++.-...+... -.++..+.+......+..+....+...
T Consensus 314 ~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~ 393 (678)
T KOG1293|consen 314 ASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDF 393 (678)
T ss_pred HHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHH
Confidence 233444445556677777766532 333333333222222211 234555555555566666666667888
Q ss_pred HHHHHHHHHHchhcc-hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccC
Q 003348 684 KKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG 760 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~-~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~ 760 (828)
..+|+.++.+++..- .-+..+-+..++.+|++++ +++..+...++++|.||.. ...-+..++..|||..+.+++.+.
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~ 473 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP 473 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC
Confidence 889999998887632 2222245577899999998 6777888889999999998 778899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCHHhHHHH-HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 761 SARGKENAAAALLQLCTNSSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 761 s~~~ke~Av~~L~~L~~~~~~~~~~v-~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
....+..+.|+|+++..+..+..+.. ...=....|..+..+.+..+++.+-.+||+|..+.
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999987544433 33345677888888999999999999999998753
No 71
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.1e-06 Score=89.75 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=47.7
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
.+..+.|-||++-+.||--+||||.||=+||..|..+. .-||.||+++++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 34569999999999999999999999999999999875 4499999999887653
No 72
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.11 E-value=2.9e-06 Score=62.21 Aligned_cols=39 Identities=41% Similarity=0.943 Sum_probs=36.0
Q ss_pred ccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCC
Q 003348 242 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t 280 (828)
||||++..++|++++|||.|+..|+..|+..+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999666779986
No 73
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00021 Score=86.99 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=160.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 621 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~ 621 (828)
.++.+-.+|++.++..+..|+..|..++.+..+. ..... ..++..+..|.++++.|+..|+.++..++.+ ...-..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 4677778889999999999999999998865433 22222 6888889999999999999999999999977 333333
Q ss_pred HHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHh--hCChH-HHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 622 IANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGR--SGAIG-PLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~-~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
-...-.++.|+..+.+. +..++.+|+.+|.|++..-. +..|.. .+.+. .|..|++++++.++..++++|...+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33445677888888765 68999999999999976432 233332 26666 344455677999999999999998886
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC--CchhHHHHHhC--CcHHHHHHH---HccCCHHHHHHH
Q 003348 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT--IPDGRVAIGQE--NGIPVLVEV---VELGSARGKENA 768 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~--~~e~r~~i~~~--g~I~~Lv~l---L~s~s~~~ke~A 768 (828)
.+.+-.-.-.-.+|.|.++|. .+.+.+.....++..++. ..-|++.+... ..+..+..+ ....++..++.-
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 666555555778899999882 223333333333333222 34456666542 245566555 333466677777
Q ss_pred HHHHHHHhhCC
Q 003348 769 AAALLQLCTNS 779 (828)
Q Consensus 769 v~~L~~L~~~~ 779 (828)
.....++|..-
T Consensus 586 ~~~warmc~il 596 (1075)
T KOG2171|consen 586 IAFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHHHh
Confidence 77778888753
No 74
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.06 E-value=0.00013 Score=84.10 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=123.1
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-
Q 003348 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 696 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~- 696 (828)
+..+.+.-....+..+....+...+..|+-++.+++. .+..+.-+....++.+||++|..+...+...++++|+||..
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme 449 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME 449 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh
Confidence 3344333333333333333445555555555555543 22222223345789999999999999999999999999987
Q ss_pred cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH--HHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003348 697 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV--AIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 697 ~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~--~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
+.+-+.++++.|+|..|..++ +.+..++..++++|.++..+.+... +....=+...++.++.++++.++|.+...|.
T Consensus 450 fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 450 FSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788899999999999999998 6778889999999999999655433 3333334678888999999999999999999
Q ss_pred HHhhCCHHhHHHHHh
Q 003348 774 QLCTNSSRFCSMVLQ 788 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~ 788 (828)
||.++..+-.+.+++
T Consensus 530 Nl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLE 544 (678)
T ss_pred HhhcCcHHHHHHHHH
Confidence 999987655555443
No 75
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.02 E-value=0.00031 Score=77.49 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=166.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 546 RKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 546 ~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..|...+++ .+.+...-|+++|..+.+.+ +.|..+..++++..|+..|.+ .+-++|.+.+-++.-|+.++.....+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 445555554 55566677889999999965 799999999999999998843 47889999999999999998877777
Q ss_pred HHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccCcc---hH----HHHHhhCChHHHHHhhcCC---CHHHHHHHH---
Q 003348 623 ANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAA--- 688 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~~e---~k----~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al--- 688 (828)
...+.|+.|..+++... ..+..-.++++.|+..... .+ ..++..+ ++.-++.|... ++++..+--
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 77799999999998765 5577788899999876442 22 3333344 45555555433 332222111
Q ss_pred ----HHHHHchhc------------------------chhHHHHHH--hCcHHHHHHhcC--CChHHHHHHHHHHHHHhC
Q 003348 689 ----TALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 689 ----~aL~nLs~~------------------------~~n~~~iv~--~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~ 736 (828)
.-...||+. .+|..++-+ ..++..|+++|+ .++.+..-|+.=+.....
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 112223332 234444544 348889999993 445555666666666666
Q ss_pred -CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 737 -IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 737 -~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|+|+..+.+.||=+.++++|.+.+++++.+|..++..|..+
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887654
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=7e-06 Score=87.94 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=50.0
Q ss_pred CcccccCccc-cccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC----CCCcHHHHHHHHHH
Q 003348 238 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANW 302 (828)
Q Consensus 238 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pN~~l~~~i~~~ 302 (828)
++..||+|.. ....|= +.+|||+||++||.+.|..+...||.|+.++.... ..++..+.+.|.--
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence 5678999996 345553 23799999999999999887778999999998876 55666666555543
No 77
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0016 Score=79.65 Aligned_cols=274 Identities=18% Similarity=0.209 Sum_probs=164.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCC
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDML----HSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL----~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
....+.+.+.+.+++..++..|++.+..++...+.+....... ..+|.++..+ ..+|.+....++.+|..|....
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 4566777778887766699999999998887664344433332 4566565554 4456666666666666665432
Q ss_pred c-c-HHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC----------------------------c-------
Q 003348 617 N-N-KSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI----------------------------E------- 657 (828)
Q Consensus 617 ~-~-k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~----------------------------~------- 657 (828)
. . +..+. ..|...+.+.++. +..+|..|+..|..++.+ +
T Consensus 238 pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 238 PKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 1 1 11111 1122222222222 233444444333333221 0
Q ss_pred -----c---hH----HHH---Hh-hC-------ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHH
Q 003348 658 -----D---NK----IKI---GR-SG-------AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714 (828)
Q Consensus 658 -----e---~k----~~I---~~-~g-------~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll 714 (828)
+ +. ..+ .- .| .++.+-.+|++.+..-+++|+.+|..++......-.-.=..+++.++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 0 00 000 00 11 24455566677788888888888877655222111111144666666
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCC
Q 003348 715 DLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEG 790 (828)
Q Consensus 715 ~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g 790 (828)
..| ++.+.++-.|+.++..++. ....-+.-...-.++.|+..+.+ .+++++.+|+.+|.|+....+. ...-.+ .+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 667 7889999999999999998 33444444555678889998876 7889999999999998876542 111111 34
Q ss_pred CHH-HHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 791 AVP-PLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 791 ~v~-~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.+. .|..|.+++++.+++.|+..|.-..
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 555 6777888899999999988876543
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.00018 Score=84.80 Aligned_cols=192 Identities=19% Similarity=0.180 Sum_probs=143.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc----hHHHHHhhCChHHHHHhhcCC-------CHHHHHHHHHHHHHch
Q 003348 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLS 695 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~s~-------~~~~~~~Al~aL~nLs 695 (828)
.+...+.+|+..+++-|-.++..+..+...++ .+..|.+.=+.+.|-+||+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46678889999888888888888888876544 244577774579999999883 3567788999999999
Q ss_pred hcchhHHHHHHhCcHHHHHHhc-CCCh-HHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003348 696 IYHENKARIVQAGAVKHLVDLM-DPAA-GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 773 (828)
Q Consensus 696 ~~~~n~~~iv~~G~V~~Ll~LL-~~~~-~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~ 773 (828)
..++....---.+.||.|++++ ..+. .++..|+.+|..++.+++|++++++.|+++.|++.+.+ .+...+.|..+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9777655444467899999988 4444 89999999999999999999999999999999999987 7788999999999
Q ss_pred HHhhCCHHhHHHH---HhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 774 QLCTNSSRFCSMV---LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 774 ~L~~~~~~~~~~v---~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+++...+...-.- .-..+++.|...........+-.+..+|..+-.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 9988654111000 001345555555555555555555555554433
No 79
>PHA02926 zinc finger-like protein; Provisional
Probab=97.97 E-value=5.4e-06 Score=83.58 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCcccccCccccccC---------CeecCCCcchhHHHHHHHHhcC-----CCCCCCCCCcCC
Q 003348 236 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~ 285 (828)
...+..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4577889999998644 4677999999999999999753 245999999876
No 80
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00035 Score=74.21 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=164.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh
Q 003348 588 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666 (828)
Q Consensus 588 ~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~ 666 (828)
.-|+.+|.+.+|.++..|+..|.+++.. ..+..... ...++.+.++++.... .+.|+.+|.|++.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999999765 33443332 3567778888877655 678899999999999888888777
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH-------hCcHHHHHHhcCCCh---HHHHHHHHHHHHHhC
Q 003348 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT 736 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-------~G~V~~Ll~LL~~~~---~v~~~Al~~LanLa~ 736 (828)
.++.++.++-+.....-...+.+|.||+..++....+.. .|.+.....+.+.+. .-....+-+++||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888999998887667778888999999997776654432 355555555554322 234667889999999
Q ss_pred CchhHHHHHhCCc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC--CCHHHHH----------------
Q 003348 737 IPDGRVAIGQENG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE--GAVPPLV---------------- 796 (828)
Q Consensus 737 ~~e~r~~i~~~g~--I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~--g~v~~L~---------------- 796 (828)
.+.||..+.+... +..++.+-..++.--+...+++|.|.|....-+-. ++.+ ++++.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 9999999988664 34444444445666777889999999987653322 2222 1222221
Q ss_pred -----Hhhc-----CCCHHHHHHHHHHHHHhhccccccC
Q 003348 797 -----ALSQ-----SGTPRAKEKAQALLSYFRNQRHGNA 825 (828)
Q Consensus 797 -----~LL~-----~g~~r~r~kA~~lL~~L~~~~~~~~ 825 (828)
+++- ..++.+|.+-.+.|-+|...+.||+
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 2222 1246789999998888888887774
No 81
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00023 Score=81.82 Aligned_cols=273 Identities=17% Similarity=0.137 Sum_probs=187.1
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003348 538 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 538 l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~----~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+..+.+.++.|.++|.+.+...+.-|..+|..++.++.+.-..=+. .-.||.++.+.++.+++++.+|+.++...-
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 3445778999999999998888999999999999876543222111 146899999999999999999999985553
Q ss_pred cCCccHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 614 INDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 614 ~~~~~k~~I~~~-g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.. .++..+..- ..+..+..+-...++++|.+.+.+|..|-...-.|..---.++++.++...++.+..+-..|+....
T Consensus 203 ~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 203 II-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred ec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 32 334444332 5677777777788999999999999988654333322222378888888889999999999999999
Q ss_pred HchhcchhHHHHHH--hCcHHHHHHhc---CCCh----------------------------------------------
Q 003348 693 NLSIYHENKARIVQ--AGAVKHLVDLM---DPAA---------------------------------------------- 721 (828)
Q Consensus 693 nLs~~~~n~~~iv~--~G~V~~Ll~LL---~~~~---------------------------------------------- 721 (828)
.++..+..+..+.. ...||.|+.=+ +.+.
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99998855444433 56777776633 1110
Q ss_pred --------HHHH---HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--
Q 003348 722 --------GMVD---KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-- 788 (828)
Q Consensus 722 --------~v~~---~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-- 788 (828)
.++. .++.+|+|+-. ..+.. -.+|.|-+.|.+....+||.++.+|..++.+.- +-+..
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~-----~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~L 432 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFG-----DELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHL 432 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhH-----HHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccch
Confidence 0111 12223332211 11111 124555555566788999999999999997643 22222
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 789 EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 789 ~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...+|.|+.++.+..+-+|....|.|..+..+
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 13688899999999999998888888876654
No 82
>PTZ00429 beta-adaptin; Provisional
Probab=97.92 E-value=0.0014 Score=79.51 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=170.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.......++.+.+.+.++++-.--.|..+++.+++.-. -+|..|.+=+.+.++.++-.|+++|.++-.. .
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~ 136 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----S 136 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----H
Confidence 44667778888888888888777777778776554321 2477788888889999999999999877431 1
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
+++ -.+.++.+.|.+.++.+|..|+-++..+-..+. ..+...+.++.|.++|.+.++.++.+|+.+|..+.......
T Consensus 137 i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 137 VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 111 245667788889999999999999999854222 33445588999999999999999999999999997644332
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS- 779 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~- 779 (828)
. -...+.+..|+..| +-++-.+-..+.+|... .+...... ...+..+...|.+.++.+.-.|+.+++++....
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 2 23345556666666 32322233444444331 22222211 235777788888899999999999999988653
Q ss_pred HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 780 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 780 ~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.....+. .....+|+.|+ ++.+.++-.+..-|..+.
T Consensus 289 ~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 289 QELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 22222221 12235566663 455677777766555443
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.8e-06 Score=90.71 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=55.7
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC-CCCCCcHHHHHHHHHH
Q 003348 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANW 302 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~i~~~ 302 (828)
+-.+|.||||+++.+--.++ .|+|-||+.||-+.+..++..||.||+.+.. ..|.++...-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 34678999999999999887 5999999999999999999999999999755 5777666556666543
No 84
>PTZ00429 beta-adaptin; Provisional
Probab=97.85 E-value=0.0031 Score=76.67 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=159.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..+..+.+.+.+.++.+++.|+-++.++...+++ .+.+.|.++.|..+|.+.|+.|+.+|+.+|..+....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 44566777888899999999999999999776553 3456689999999999999999999999999986443222 2
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch-h
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-N 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~-n 700 (828)
-...+.+..|+..|..-++=.+...+.+|..... ..... ....+..+...|++.++.+...|+.++.++....+ .
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 2234556677777766666566666666654322 11111 12567788888889999999999999999876421 1
Q ss_pred HHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-Cchh-----HHH--------------------HHhCC----cH
Q 003348 701 KARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDG-----RVA--------------------IGQEN----GI 750 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e~-----r~~--------------------i~~~g----~I 750 (828)
....+-..+...|+.|+..+.+++--++..+..|+. .+.- +.. +++.. .+
T Consensus 291 ~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL 370 (746)
T PTZ00429 291 LIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEIL 370 (746)
T ss_pred HHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHH
Confidence 111111122344555554444444444444433322 1100 000 00111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 751 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
..|.+.+...+...+..++.++..++...+... ..++..|+.++..+..-+.+ +...++.+
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~~~v~e-~i~vik~I 431 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRRPELLPQ-VVTAAKDI 431 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCchhHHH-HHHHHHHH
Confidence 344444455666777777777777776544322 34577788888765544433 44445544
No 85
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.4e-06 Score=90.96 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=57.6
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcC----CCCCCCCCCcCCCCCCCCcH----HHHHHHHHHHHHcC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNY----TVKALIANWCELNN 307 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~~~l~pN~----~l~~~i~~~~~~~~ 307 (828)
.+.+..||||++-..=|+.+.|||.||=.||.+||..+ ...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 44589999999999999999999999999999999854 45699999999998877753 23444555555565
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.83 E-value=0.0014 Score=74.62 Aligned_cols=220 Identities=16% Similarity=0.048 Sum_probs=119.5
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 543 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..++.|+..|. ..+.++...++..+. ...++ .++..|+..|.+.++.++..++.+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 45667777774 445555444433332 12111 13666777776666667777777665331
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
.....+.|+.+|++.++.++..++.++... .....+.|..+|++.++.++..|+.+|..|-
T Consensus 115 --~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------ 175 (410)
T ss_pred --chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence 224455666666666666666555544431 1133456666666666666666666666542
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHH----hC------------------CcHHHHHHHHc
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG----QE------------------NGIPVLVEVVE 758 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~----~~------------------g~I~~Lv~lL~ 758 (828)
....++.|...+ +.+..++..|+..|..+.. ++....+. .. ..++.|..+++
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~ 250 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQ 250 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhc
Confidence 223344444444 4555555555555544432 11111111 01 23445555554
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 759 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 759 s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.. .++..++.+|..+.. ...++.|+..+... ..++.|.+.++.+..-
T Consensus 251 d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 251 AA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred Ch--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 42 266666666554432 35788888877654 3889999998888653
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.82 E-value=2e-05 Score=81.84 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=59.0
Q ss_pred ccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCc-CCCCCCCCcHHHHHHHHHHHHHc
Q 003348 240 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN 306 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~i~~~~~~~ 306 (828)
+.||+|+.|.+.|+-+ +|||+||..||+..+......||.|... +-.+.|.|++..+..|+.+.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 6899999999999998777889999643 55678999999999999987743
No 88
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.79 E-value=1.9e-05 Score=60.64 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=34.9
Q ss_pred cccCccccc---cCCeecCCCcchhHHHHHHHHhcCCCCCCCCCC
Q 003348 241 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 282 (828)
Q Consensus 241 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 282 (828)
.||||.+.+ .-|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999998 457789999999999999998 44467999985
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0011 Score=77.70 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=163.1
Q ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc----
Q 003348 586 AINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED---- 658 (828)
Q Consensus 586 aI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e---- 658 (828)
-|+.|+.-+.+ .-.+-+..|+..|..++. ..|..+ -+-|+++|+++|... ++++..+++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 45666665544 345567888888887763 233333 345799999999875 68999999999999987653
Q ss_pred ---hH----------HHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc--hhHHHHH-HhCcHHHHHHhc-CCC
Q 003348 659 ---NK----------IKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIV-QAGAVKHLVDLM-DPA 720 (828)
Q Consensus 659 ---~k----------~~I~-~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~--~n~~~iv-~~G~V~~Ll~LL-~~~ 720 (828)
.+ ..+. ..+.|..|+..+...+-.++..|+..|.+|..+. +.+..++ -.-+|..|+.+| +..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 12 2222 3488999999999999999999999999997744 4444444 477999999999 556
Q ss_pred hHHHHHHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHcc-C---CHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHH
Q 003348 721 AGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVEL-G---SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795 (828)
Q Consensus 721 ~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~s-~---s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L 795 (828)
..++..++-.|..|.......+.++. +++...|..+++. | ..-+.+.|...|.||-.++...+..+.+.+.+|.|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 77888899999999986555555544 6789999999975 2 23588999999999999998888999999999999
Q ss_pred HHhhcC
Q 003348 796 VALSQS 801 (828)
Q Consensus 796 ~~LL~~ 801 (828)
.+++..
T Consensus 260 ~klL~~ 265 (970)
T KOG0946|consen 260 LKLLSV 265 (970)
T ss_pred HhhcCc
Confidence 987753
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00059 Score=80.46 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=49.7
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
-+.||.|..=++|-|++.|||.||-.||+..+.....+||.|+..|...++.|-
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 478999999999999999999999999999999888899999999998887663
No 91
>PF05536 Neurochondrin: Neurochondrin
Probab=97.73 E-value=0.0019 Score=76.29 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=158.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh---HHHHHhcCcHHHHHHHHcC-------CCHHHHHHHHHHHHHh
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHS-------SETKIQENAVTALLNL 612 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~GaI~~Lv~lL~s-------~d~~v~e~A~~aL~nL 612 (828)
..+...+++|+..+.+.+..++-.+.++.+.++.+ ++.+.++=+.+.|-++|.+ +....+.-|+++|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788899999888677778888888998876643 3457787667999999987 2355677899999999
Q ss_pred hcCCccHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 003348 613 SINDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 691 (828)
Q Consensus 613 s~~~~~k~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL 691 (828)
+.+++....---.+-||.|+.++.+.+. ++...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....|+.+|
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 8876543222222569999999988776 99999999999999999999999999999999999988 566788899999
Q ss_pred HHchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh--HHHHHh----CCcHHHHHHHHcc-
Q 003348 692 FNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIGQ----ENGIPVLVEVVEL- 759 (828)
Q Consensus 692 ~nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~--r~~i~~----~g~I~~Lv~lL~s- 759 (828)
.+++........--. ..+++.|-..+ .......-.++..|..+-...+. ...... ......|..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 998774332110011 12334444444 22223344567777776654421 111111 2234555566665
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 003348 760 GSARGKENAAAALLQLCT 777 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~ 777 (828)
..+..|..|..+...|..
T Consensus 244 ~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 456666655555444443
No 92
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.5e-05 Score=82.32 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHH-HHhcCCCCCCCCCCcCCCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+|.|+||.+.|.+|+-++|||.||-.||.. |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5899999999999999999999999999999 87776667999998765543
No 93
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0073 Score=67.08 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=177.2
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHHcCCHHHH
Q 003348 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPL 631 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~------~~~----k~~I~~~g~l~~L 631 (828)
..+..+..+|. -|+---.+++.++|+.|+.+|.+++.++....+..|..|... .++ -..+++.+.++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 35666677776 566777888999999999999999999998888888888632 122 3345566888888
Q ss_pred HHhhcCCC------HHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHHchhcch-hH
Q 003348 632 IHVLQTGS------PEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHE-NK 701 (828)
Q Consensus 632 v~lL~s~~------~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~~~~-n~ 701 (828)
++-+..=+ .....++.+.+-|+... ++....+++.|.+..|+.-+... -...+.+|...|.-+..+.+ ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 88765432 23566778888888764 55677778888888877755432 45677888888887777554 77
Q ss_pred HHHHHhCcHHHHHHhc------CC----ChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003348 702 ARIVQAGAVKHLVDLM------DP----AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL------~~----~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
.......+|..|++-+ ++ +.++.++....|+.+...+++|+.+....|++...-+++. ....+..|..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 7788888999988865 21 3467788889999999999999999998887766555554 55677788999
Q ss_pred HHHHhhCCH--HhHHHHHhCCCHHHHHHhhc
Q 003348 772 LLQLCTNSS--RFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 772 L~~L~~~~~--~~~~~v~~~g~v~~L~~LL~ 800 (828)
|-....+.+ .+|..+++.+|+..+.-+..
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 988888765 68888888877777666554
No 94
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.63 E-value=9.5e-05 Score=55.72 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003348 574 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 574 s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+++++..+.+.|+||.|+.+|.+.+++++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
No 95
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00094 Score=75.80 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=163.7
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 003348 540 GIETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 540 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~ 616 (828)
-......-|..+|...+.+++..+-..|..+-. .++.. +--...++.|+.-+.++++.+|..|+.-|..+..-.
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 345677789999999999988655444433322 12221 112267899999999999999999988887775444
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHH---HHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 617 NNKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~-e~~~~Aa~---aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
...-...-+|.+..++.++.+... .+++.+.. .|..+...+..+..|--...|..|...+.++..+.+..|+..+.
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~ 361 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWII 361 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 444444556778888888766543 34444433 23344333333333333357888889999999999999999999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 003348 693 NLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 771 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~ 771 (828)
.|-....++.........+.|+.-| +.+..++..++.+|+++|..+..... -.++..|+++......-....+..+
T Consensus 362 ~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lI 438 (675)
T KOG0212|consen 362 LLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLI 438 (675)
T ss_pred HHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHH
Confidence 9987777777667788889998888 67788999999999999997766511 1234455555566666788889999
Q ss_pred HHHHhhC
Q 003348 772 LLQLCTN 778 (828)
Q Consensus 772 L~~L~~~ 778 (828)
+..||.-
T Consensus 439 IRqlC~l 445 (675)
T KOG0212|consen 439 IRQLCLL 445 (675)
T ss_pred HHHHHHH
Confidence 9999974
No 96
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.56 E-value=0.0012 Score=73.22 Aligned_cols=179 Identities=21% Similarity=0.226 Sum_probs=138.6
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHH--HHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003348 620 SAIANANAIEPLIHVLQTGSPEA--RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~--~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
..|...|+++.|++++..++.+. +..++..|..+. ..+|+..++..| +..++.+-+.. .++..+..+..|.||-.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45556799999999999998654 888888887764 456778887776 66666666554 67889999999999988
Q ss_pred -cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 697 -YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 697 -~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
.++.+.+++++|++..++-.+ ..++.+...|.-+|+|++- ..+++..|++..+-..|.-+-.+.++-.+.+||-++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 457889999999999987776 5678899999999999887 446678888888888888888888999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCC---HHHHHHhhcC
Q 003348 773 LQLCTNSSRFCSMVLQEGA---VPPLVALSQS 801 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~---v~~L~~LL~~ 801 (828)
..|+.+.+ .-..+.+.|. +.+|+..+..
T Consensus 332 ~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 332 AVLATNKE-VEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred hhhhhhhh-hhHHHhhccchhhhhhhhhccCc
Confidence 99998653 3344444443 4444444443
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.55 E-value=0.017 Score=65.06 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=181.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~~~~k 619 (828)
......+..++-+++.+++..+.+.+|.+.. +...-..+.+.+.--.++.-|..+ +..=+++|+..+..+.....+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 3455555555555668899999999999888 446667777777666777777654 3334568888877664332222
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
.. ...|.+..|+.+..+.++..+..+..+|+.|+..+ -..+...|++..|++.+.++..+.....+.++..+...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 11 24478889999999999999999999999998642 2456677999999999998877788888889999988888
Q ss_pred hHHHHHHhCcHHHHHHhc-CC-------Ch--HHHHHHHHHHHHHhCCchhHHHHHhC--CcHHHHHHHHccCCHHHHHH
Q 003348 700 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN 767 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~-------~~--~v~~~Al~~LanLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~ 767 (828)
.|..+...--+..++.-+ +. +. .....+..++..+-.+=.|--.+... .++..|+..|..+++++++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 877665533344444433 21 22 22334444444443333343333322 35777777777777777776
Q ss_pred HHHHHHHHhhC------------------C--------------------------H----H----hHHHHHhCCCHHHH
Q 003348 768 AAAALLQLCTN------------------S--------------------------S----R----FCSMVLQEGAVPPL 795 (828)
Q Consensus 768 Av~~L~~L~~~------------------~--------------------------~----~----~~~~v~~~g~v~~L 795 (828)
...++..+-.- + . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 66666554420 0 0 0 11234578999999
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHh
Q 003348 796 VALSQSG-TPRAKEKAQALLSYF 817 (828)
Q Consensus 796 ~~LL~~g-~~r~r~kA~~lL~~L 817 (828)
+.+.... ++...+||.-+|.-+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 788999999988754
No 98
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.0041 Score=74.97 Aligned_cols=242 Identities=18% Similarity=0.165 Sum_probs=172.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCCccHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~n-Ls~~~~~k~~ 621 (828)
.++|.+++-|-+. --+..|+..|..+---.+=.-..-..-|.+|..+++|++.-.+++---+-+=.. |+.++..+..
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 3455555554221 234456655555544333233333445999999999999888877665555444 4788888888
Q ss_pred HHHcCCHHHHHHhhcC-C--CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchh
Q 003348 622 IANANAIEPLIHVLQT-G--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s-~--~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~ 696 (828)
+++.++-...+.+|.. + +++-|..||-+|..+..+ .-.+....+.+.|...+..|.++ .+-.+.+++.+|..|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8888888888888877 3 357788888888887653 34455566668888888888886 57899999999999977
Q ss_pred -cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-----chhHHHH------------HhCCcH---HHHH
Q 003348 697 -YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-----PDGRVAI------------GQENGI---PVLV 754 (828)
Q Consensus 697 -~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~-----~e~r~~i------------~~~g~I---~~Lv 754 (828)
+.++++.-++.++...|+.+| ++-++++..|+-+|..+..+ ++....+ ++.... -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 678888889999999999999 57788999999999988773 3332222 121122 2566
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHH
Q 003348 755 EVVELGSARGKENAAAALLQLCTNSSRFCSMV 786 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v 786 (828)
.++..+++-++...+.+|..+..+...+...+
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 77788999999999999988888765444433
No 99
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0039 Score=72.13 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=172.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
.-.+++++++.++.++.++..|+.++..+.-.. ....+..- .+++.|..+-..++++|+.+.+.+|.-|-.-...|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 567999999999999999999999998765532 33333332 566777777778899999999999877743221111
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCCC--H---------------
Q 003348 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGT--P--------------- 681 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~~--~--------------- 681 (828)
.---.+.+..+++.-+..+.++...|+.....++..+-.+..+... ..||.|+.=+.-.+ .
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 1111356777777778888889999999999998887666666554 66666665332111 0
Q ss_pred ---------------------------------------HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-----
Q 003348 682 ---------------------------------------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----- 717 (828)
Q Consensus 682 ---------------------------------------~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL----- 717 (828)
..++-.+.+|--|+ .+....+++.++.+|
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcC
Confidence 11222222222111 123344566666655
Q ss_pred CCChHHHHHHHHHHHHHhCCchhHH-HHHhC--CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHH
Q 003348 718 DPAAGMVDKAVAVLANLATIPDGRV-AIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVP 793 (828)
Q Consensus 718 ~~~~~v~~~Al~~LanLa~~~e~r~-~i~~~--g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~ 793 (828)
+++..+++.++-+|..+|. |+. -+... ..||.|+.+|.+..+-+|.-.||+|...+..-. +....... .++.
T Consensus 404 ~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~ 479 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLE 479 (885)
T ss_pred cchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHH
Confidence 3445566777777776663 433 23332 258999999999999999999999977654311 01111111 2456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 794 PLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.|+.-+..++.++++.|......|-+.
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 677777788999999999988877664
No 100
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.49 E-value=9.5e-05 Score=63.32 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.6
Q ss_pred CCCcccccCccccccCC-------------eecCCCcchhHHHHHHHHhcCCCCCCCCC
Q 003348 236 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR 281 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 281 (828)
++++- |+||++-|.|| +..+|||.|-..||.+|+..+ .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 44444 99999999555 235899999999999999876 5899996
No 101
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.45 E-value=7.7e-05 Score=84.38 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCCcccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-cHHHHHHHHHH
Q 003348 236 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW 302 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~i~~~ 302 (828)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|++.+.....+| -..++..+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 6778999999999999999 599999999999999998 678999999988877776 34556666555
No 102
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=8.8e-05 Score=82.97 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC-----CCCCcHHHHHHHHHHHHH
Q 003348 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL 305 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-----~l~pN~~l~~~i~~~~~~ 305 (828)
.+..++.+|-|-||..++.+||++||||+||+.||.+-+... ..||.|+.++... ...+|+.+..+|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345679999999999999999999999999999999977743 5599999988752 334577788888888664
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.43 E-value=0.00026 Score=53.30 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=38.4
Q ss_pred CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 737 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 737 ~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+++++..+++.|+++.|+++|.+.++.++++|+++|.|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999984
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.013 Score=62.80 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=185.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH----HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM----VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~----~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~ 617 (828)
.+..+.|-.-|..++..++..++..+..+..+.+.|-. .++.+|..+.++..+..+|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 34566677777777888888899988888776554432 34567999999999999999999999999999999888
Q ss_pred cHHHHHHcCCHHHHH--HhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003348 618 NKSAIANANAIEPLI--HVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 693 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv--~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s-~~~~~~~~Al~aL~n 693 (828)
....|.++..++.+- .+--.-+.-+|......+..+.+ .++.....-..|.+..|..=|+- .+.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 888888887766543 23333344566666666666544 34444444456877777666654 567788888899999
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHH----HHHHHHhCCchhHHHHHhC--CcHHHHHHHHccCCHHH
Q 003348 694 LSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARG 764 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al----~~LanLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ 764 (828)
|+..+..+..+...|+|+.+..++ ++++--.-.++ ..+.+.+...-.-+++++. -+|....++++..++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 999888999999999999999988 33333233333 3333333322223344442 24666778888999999
Q ss_pred HHHHHHHHHHHhhCCHHhHHHHHhCCC--HHHHHHhhcCCCHHHH-HHHHHHHHHhh
Q 003348 765 KENAAAALLQLCTNSSRFCSMVLQEGA--VPPLVALSQSGTPRAK-EKAQALLSYFR 818 (828)
Q Consensus 765 ke~Av~~L~~L~~~~~~~~~~v~~~g~--v~~L~~LL~~g~~r~r-~kA~~lL~~L~ 818 (828)
++.|+.+|..|.++.. ..+.+++.|- ...|+.-.-+.+..++ +.|..+|..+.
T Consensus 321 ieaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 9999999999988764 3445555442 3334333333333332 33444554443
No 105
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.41 E-value=8.9e-05 Score=79.13 Aligned_cols=65 Identities=15% Similarity=0.340 Sum_probs=53.4
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC----CCCCcHHHHHHHHH
Q 003348 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIAN 301 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~i~~ 301 (828)
+=....|++|..+|.|+-++ .|=|||||+||-+||.. ..+||.|+..+..+ .+.++.+|+.++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34677899999999999986 59999999999999998 47899999877655 45666777766654
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.38 E-value=0.001 Score=69.57 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=117.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---chHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003348 636 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 636 ~s~~~e~~~~Aa~aL~nLS~~~---e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
.+.+++.+..|+..|..+.... .....+... ..+..+...+.+....+.+.|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567889999999988886543 333333332 56677888888778889999999999998854444333456688
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH---HhHHH-
Q 003348 711 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS---RFCSM- 785 (828)
Q Consensus 711 ~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~---~~~~~- 785 (828)
+.|++.+ +....+.+.|..+|..++.+-..-..+ .++.+...+.+.++.+|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 8898888 566778888999999888854411111 15566677788999999999999999877655 11111
Q ss_pred HHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 786 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 786 v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
..-..+++.|...+.+.++.+|+.|..++..|....
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111346888999999999999999999999886654
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.36 E-value=0.013 Score=67.69 Aligned_cols=257 Identities=15% Similarity=0.162 Sum_probs=167.4
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHH----------cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHH
Q 003348 564 TAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 632 (828)
Q Consensus 564 l~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL----------~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv 632 (828)
+..|+.|++ ++.+-..+....++..|+.+- ...+..+..+|+.+|+|+-.. +..|..+++.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456677766 445656666656666666654 335788999999999998765 56788888999999999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHhcc-CcchHHHHHhh-CChHHHHHhhcC-----------------CCHHHHHHHH
Q 003348 633 HVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDAA 688 (828)
Q Consensus 633 ~lL~s~-----~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~s-----------------~~~~~~~~Al 688 (828)
..|+.. +.+.......+||-++. ..+.+..+.+. +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 68888899999998876 45556566554 777777776631 1235677899
Q ss_pred HHHHHchhcchhHHHHHHhCcH----HHHHHh---c---CCChHHHHHHHHHHHHHhCC-chh-------HHHH----Hh
Q 003348 689 TALFNLSIYHENKARIVQAGAV----KHLVDL---M---DPAAGMVDKAVAVLANLATI-PDG-------RVAI----GQ 746 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V----~~Ll~L---L---~~~~~v~~~Al~~LanLa~~-~e~-------r~~i----~~ 746 (828)
.++||+..+......--..+.+ ..|..+ . .+.......++.+|.|+--. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998744332211223333 334444 1 12245567777777776211 011 0111 11
Q ss_pred CCcHHHHHHHHcc----CC----HHHHHHHHHHHHHHhhCCHHhHHHHHh----------------CCCHHHHHHhhcCC
Q 003348 747 ENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQSG 802 (828)
Q Consensus 747 ~g~I~~Lv~lL~s----~s----~~~ke~Av~~L~~L~~~~~~~~~~v~~----------------~g~v~~L~~LL~~g 802 (828)
...+..|+++|.. .. ...----+.+|..++......++.+.. ...-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2347777777743 11 133444566677777776544444432 23567799999999
Q ss_pred CHHHHHHHHHHHHHhhccc
Q 003348 803 TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 803 ~~r~r~kA~~lL~~L~~~~ 821 (828)
.+.+|..+.++|-.|.+..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 9999999999998887644
No 108
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.34 E-value=0.016 Score=65.38 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=170.9
Q ss_pred hhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHH
Q 003348 570 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAA 647 (828)
Q Consensus 570 La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa 647 (828)
|-+..+.-+..+.-...++.+..++-+++.+++..+.+++..+..+...-..+.+.+.---++.-|... ...-|++|.
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence 334444445554444455666656656669999999999998888887777777777555566667654 466788999
Q ss_pred HHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHH
Q 003348 648 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK 726 (828)
Q Consensus 648 ~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~ 726 (828)
..+..+.........+ ..|.+..++.+..+.++..+..|+.+|+.|+..+. ..++..|++..|++.+ +....+.+.
T Consensus 90 kliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 8888776543322222 45889999999999999999999999999988433 3457899999999987 554557888
Q ss_pred HHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-------CCH--HHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHH
Q 003348 727 AVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-------GSA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV 796 (828)
Q Consensus 727 Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-------~s~--~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~ 796 (828)
.+.++..+..+|..|..+...--+..++.-+.+ .+. ..-..+..++..+-+..+.....-.. ..++..|+
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 899999999999999987653334444443321 122 23344555555555544332222222 25789999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhc
Q 003348 797 ALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 797 ~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
..+...++++|+....++--+-+
T Consensus 247 ~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 247 DSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHC
Confidence 99999999999999887765543
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0022 Score=72.38 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=147.6
Q ss_pred HHHHHHhhcCC-ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHH
Q 003348 606 VTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 606 ~~aL~nLs~~~-~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
+..|..++.+- .-|.-+.+.....+|+++|..+..-+.--+...++|+.. ....+..+.+.|+|..|+.++.+.+...
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaL 489 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDAL 489 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhh
Confidence 33344444432 236667788899999999999877777778888898876 5566888888999999999999888999
Q ss_pred HHHHHHHHHHchhcch--hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC----chhHHHHHhCC----cHHH
Q 003348 684 KKDAATALFNLSIYHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI----PDGRVAIGQEN----GIPV 752 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~--n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~----~e~r~~i~~~g----~I~~ 752 (828)
+.+..|.|.+|..+.+ .+-+++..-++..++.+. ++.-.+.+.++.+|.|+.-+ ++.+..+...- ....
T Consensus 490 qans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~ 569 (743)
T COG5369 490 QANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKR 569 (743)
T ss_pred hhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHH
Confidence 9999999999988543 455678888889999998 78888999999999998762 22333332221 3567
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-CCCHHHHHHhhc
Q 003348 753 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQ 800 (828)
Q Consensus 753 Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-~g~v~~L~~LL~ 800 (828)
|++.++..+|-..+..+.+|.+++..++.....+.+ +..+..+.+++.
T Consensus 570 l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 570 LIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 788888899988889999999999888766666654 445555555443
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.33 E-value=0.02 Score=63.45 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=133.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
..+..+++.+.+.+..++..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468889999998888889888888554432 347899999999999999999999887662
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHH------------HHHHHH
Q 003348 623 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT 689 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~------------~~~Al~ 689 (828)
....++.|+..|. +.+..++..++.+|..+- ...++..|+.++++..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2347889999998 588999999999998773 3456888999988865333 222222
Q ss_pred HHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003348 690 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 690 aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+|.. +...-.++.+..++ +....++..|...|..+.... ..+.+.+...+...+..++..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 22344677788877 555677888888888877754 2345666667777777777666
Q ss_pred HHHHHHHh
Q 003348 769 AAALLQLC 776 (828)
Q Consensus 769 v~~L~~L~ 776 (828)
+..|..+-
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 66665443
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.29 E-value=0.0017 Score=67.87 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=113.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHH
Q 003348 550 EDLKSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIAN 624 (828)
Q Consensus 550 ~~L~s~~~~~q~~Al~~L~~La~~s--~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~-k~~I~~ 624 (828)
+.-.+.+++.+..|+..|+.+...+ ......+.+. ..+..++..+.+....+...|+.++..|+..-.. -... -
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~ 92 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-A 92 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-H
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-H
Confidence 3345789999999999999998876 3333333332 5556777777766778889999999988754222 2222 3
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch-hHHH
Q 003348 625 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKAR 703 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~-n~~~ 703 (828)
...++.|++.+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 357899999999999999999999999887643311111 14666677788899999999999988866333 2222
Q ss_pred HHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003348 704 IVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 704 iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
+-. ..+++.+...+ |.+.++++.|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 222 44667777777 7889999999888888865
No 112
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.26 E-value=0.0088 Score=63.94 Aligned_cols=226 Identities=14% Similarity=0.122 Sum_probs=161.2
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-HcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhh-CC
Q 003348 593 MLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-GA 668 (828)
Q Consensus 593 lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~-~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~ 668 (828)
+++.-++-++..|+.+|.++...++.|..+- +..+-..++.++++ |..+.+.+++-++|-|+........|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344456678889999999998887766654 44455678888876 45789999999999999988887666655 77
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhc-C---CChHHHHHH---HHHHHH-----
Q 003348 669 IGPLVDLLGNG-TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM-D---PAAGMVDKA---VAVLAN----- 733 (828)
Q Consensus 669 I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL-~---~~~~v~~~A---l~~Lan----- 733 (828)
|..|+.+.+.. ...+.+.++..+.|++. ..+....+.-.|-+.+-+++| + ++++++... -..|.+
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888876 57788899999999988 224445555566455555555 2 334433211 111111
Q ss_pred --------------HhCCc---------hhHHHHHhCC--cHHHHHHHHccCCHH-HHHHHHHHHHHHhhCCHHhHHHHH
Q 003348 734 --------------LATIP---------DGRVAIGQEN--GIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMVL 787 (828)
Q Consensus 734 --------------La~~~---------e~r~~i~~~g--~I~~Lv~lL~s~s~~-~ke~Av~~L~~L~~~~~~~~~~v~ 787 (828)
|+-.| .+...+.+.+ .+..|.++++...+. .-.-||.=+.++.+..|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 12222 1233444433 478888999876665 455678888888998998888999
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 788 QEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 788 ~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+.|+-+.++.|+.++++++|-.|..++..+-
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999887653
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.099 Score=58.44 Aligned_cols=238 Identities=16% Similarity=0.155 Sum_probs=170.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----hhh----HHHHHhcCcHHHHHHHHcCC------CHHHHHHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDN----RMVIANCGAINILVDMLHSS------ETKIQENAV 606 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-----~~n----r~~i~~~GaI~~Lv~lL~s~------d~~v~e~A~ 606 (828)
-..|+.|+++|...|.++-...+..|..|+-.+ .+. -..+++.++++.|++-+..= ...-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357899999999999999999999999998643 221 22345668899998877542 233446677
Q ss_pred HHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-cchHHHHHhhCChHHHHHhhc----C
Q 003348 607 TALLNLSI-NDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG----N 678 (828)
Q Consensus 607 ~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~----s 678 (828)
..+-|+.. .+.....+++.|.+.-|+.-+... -..-+.+|..+|.-+-.+ ++++...+...++..+++-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888854 466677788888888877755433 355778888888887664 458888888888888877663 1
Q ss_pred C-----CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHHHhCCcH
Q 003348 679 G-----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAIGQENGI 750 (828)
Q Consensus 679 ~-----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~---r~~i~~~g~I 750 (828)
+ ..+...+-..+|+.+...+.|+.+++...+++...-++....-..--++.+|-.+...+++ +..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 1355667777888888899999999998888865555544444556789999998887775 4566777777
Q ss_pred HHHHHHHc-c--------C-CHHHHHHHHHHHHHHhhCC
Q 003348 751 PVLVEVVE-L--------G-SARGKENAAAALLQLCTNS 779 (828)
Q Consensus 751 ~~Lv~lL~-s--------~-s~~~ke~Av~~L~~L~~~~ 779 (828)
..+..+.. . . -...-++.+.+|+++-.+.
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 76665543 1 1 2456778889998887643
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.13 E-value=0.065 Score=62.03 Aligned_cols=239 Identities=19% Similarity=0.237 Sum_probs=160.9
Q ss_pred hhHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHH
Q 003348 542 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV 606 (828)
Q Consensus 542 ~~~V~~Lv~~L----------~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-----d~~v~e~A~ 606 (828)
+..+..|++.- ...++.+..+|+++|.++...++..|..+.+.|..+.++..|+.. +.++.....
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 45566676665 255788899999999999999999999999999999999999875 788888888
Q ss_pred HHHHHhhc-CCccHHHHH-HcCCHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhccCcchHHHHHhhC
Q 003348 607 TALLNLSI-NDNNKSAIA-NANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG 667 (828)
Q Consensus 607 ~aL~nLs~-~~~~k~~I~-~~g~l~~Lv~lL~s-----------------~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g 667 (828)
++|.-++. ....+..++ +.+++..|+..|.. ........++.++||+..+......--...
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 88877754 345555555 45788877776531 134467788999999976433222101123
Q ss_pred ChHHHHHhhc-------C--CCHHHHHHHHHHHHHchhcc-hh-------HH----HHHHhCcHHHHHHhcC------CC
Q 003348 668 AIGPLVDLLG-------N--GTPRGKKDAATALFNLSIYH-EN-------KA----RIVQAGAVKHLVDLMD------PA 720 (828)
Q Consensus 668 ~I~~Lv~LL~-------s--~~~~~~~~Al~aL~nLs~~~-~n-------~~----~iv~~G~V~~Ll~LL~------~~ 720 (828)
.++.|+.+|. . ........++.+|.|+=... .. .. ......++..|+.+|+ ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 3444444432 1 13567788888888882211 11 00 0122346777777772 11
Q ss_pred ---hHHHHHHHHHHHHHhCC-chhHHHHHh--------------CC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 721 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 721 ---~~v~~~Al~~LanLa~~-~e~r~~i~~--------------~g--~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.....-.+.+|..++.. ...|..+.. .| .-..|+.++.+..+.++..++..|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 23455677888888884 455555532 12 35789999998889999999999999998765
No 115
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.11 E-value=0.035 Score=63.31 Aligned_cols=151 Identities=24% Similarity=0.150 Sum_probs=114.3
Q ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003348 585 GAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 585 GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
.+++.|+..|. .+++++...++.+|. ..+. ..++..|+..|.+.+..++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 46888999995 566777665555543 2211 11388999999999999999999988754
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 003348 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
...++.+.|+.+|++.++.++..++.++.. ......+.|..+| +++..+...|+.+|..+..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 244778999999999999999888877766 2223456788888 6778889999999987653
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003348 743 AIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
...++.|...+.+.++.++..|+..|..+.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 345677888888999999999999887664
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0036 Score=70.82 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=169.7
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcCCCH
Q 003348 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP 640 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~~~ 640 (828)
.++..|..+++.-..-|.-+.++..+++|+.+|+.++..+.--+...++|+... .+-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 344555566665555677788889999999999887766667788888888654 5568889999999999999998888
Q ss_pred HHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc-h---hHHHHHHhC----cH
Q 003348 641 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E---NKARIVQAG----AV 710 (828)
Q Consensus 641 e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~-~---n~~~iv~~G----~V 710 (828)
..+.++.|+|..+..+... |-.....-++..++++..++.-.++..++..|.|++-+. . .+.-+++.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999886554 444455566899999999999999999999999996622 2 222222222 23
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHHhCCchhHHHH-Hh-CCcHHHHHHHHc----c-----C------------------
Q 003348 711 KHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAI-GQ-ENGIPVLVEVVE----L-----G------------------ 760 (828)
Q Consensus 711 ~~Ll~LL~-~~~~v~~~Al~~LanLa~~~e~r~~i-~~-~g~I~~Lv~lL~----s-----~------------------ 760 (828)
..|++.+. .++-.....+.+|.+++.+.+....+ .+ ...+..+.++|. . +
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 33444442 33444556678887777765554433 32 223333333321 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHHHhhC---------CHHhHHHHHhCCCHHHHHHhhcCCCHH
Q 003348 761 --------------------------SARGKENAAAALLQLCTN---------SSRFCSMVLQEGAVPPLVALSQSGTPR 805 (828)
Q Consensus 761 --------------------------s~~~ke~Av~~L~~L~~~---------~~~~~~~v~~~g~v~~L~~LL~~g~~r 805 (828)
+.+......|++.|+... ..+.++.+...|.-..|..+....++.
T Consensus 648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~ 727 (743)
T COG5369 648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI 727 (743)
T ss_pred ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence 111222344444443321 113344445556666666666666779
Q ss_pred HHHHHHHHHHHhhc
Q 003348 806 AKEKAQALLSYFRN 819 (828)
Q Consensus 806 ~r~kA~~lL~~L~~ 819 (828)
+|+++..+|.+++-
T Consensus 728 vrek~~taL~~l~l 741 (743)
T COG5369 728 VREKIGTALENLRL 741 (743)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998863
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.027 Score=64.41 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=181.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
..++|+.|-+.+..-++..+...+.-|..|-... .+..+.-. ...+-|..+|..+..+++..+-++|.++-..-.++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4678898989998889999988888888875543 33333332 67788889999999999877777776653211111
Q ss_pred HHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHH-HHHHHHH---HHHHc
Q 003348 620 SAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR-GKKDAAT---ALFNL 694 (828)
Q Consensus 620 ~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~-~~~~Al~---aL~nL 694 (828)
...++ ...++.++.-+.++.++++..|..-|..............-.|++..++.++.+..+. .+..|.. .|..+
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 11112 2467778888888899999988777776655444444444458888888888776553 4443333 23333
Q ss_pred hhcchhHHHHHHh-CcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 695 SIYHENKARIVQA-GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~-G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
+.....+.. ++. ..+..|...+ ++..+.+-.++..+..|-....|+-........+.|++-|.+.++.+...+..++
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 333333323 443 3566677777 4556677788888888877777777777777899999999999999999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.++|...... .. -..+..|+++...++.-.+..+.-++|.|..
T Consensus 402 a~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 402 ASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999875421 00 1123445555555555555666666665543
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.00 E-value=0.0042 Score=54.41 Aligned_cols=86 Identities=31% Similarity=0.430 Sum_probs=70.5
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003348 587 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 665 (828)
Q Consensus 587 I~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~ 665 (828)
||.|+..| .++++.++..|+.+|.++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 68899988 7889999999999998442 124699999999999999999999999977 24
Q ss_pred hCChHHHHHhhcCC-CHHHHHHHHHHHH
Q 003348 666 SGAIGPLVDLLGNG-TPRGKKDAATALF 692 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~-~~~~~~~Al~aL~ 692 (828)
..+++.|.+++.+. +..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999886 4556888888874
No 119
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00038 Score=73.31 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=44.3
Q ss_pred cccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003348 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.+++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999988877788999999998863
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.94 E-value=0.04 Score=61.09 Aligned_cols=187 Identities=28% Similarity=0.334 Sum_probs=126.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
..++.++.++.+.+..++..|...|..+. ..-+++.+..+|.+.+..++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 47889999999988989988888865442 3357899999999999999999999777652
Q ss_pred hhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhH--
Q 003348 665 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR-- 741 (828)
Q Consensus 665 ~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r-- 741 (828)
...+++.|+.+|. +.+..++..|+.+|..+- ...++..|+.++....... +...+. ......|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~--a~~~~~--~~~~~~r~~ 168 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS--AAAALD--AALLDVRAA 168 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh--hhhhcc--chHHHHHHH
Confidence 3477999999999 588999999999998863 2333777788773322111 111110 0000111
Q ss_pred -----HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003348 742 -----VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 814 (828)
Q Consensus 742 -----~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL 814 (828)
..+.+...++.+.+.+......++..|+.+|..+.... ..+...+...+..+...+|.++...|
T Consensus 169 a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 169 AAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 11223446889999999999999999999999988764 12334444444444444444444443
No 121
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.15 Score=61.92 Aligned_cols=255 Identities=19% Similarity=0.199 Sum_probs=155.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 003348 545 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 623 (828)
Q Consensus 545 V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~ 623 (828)
.+.++..|+ ...+.+|..|+..+..++. +.+.-..++..|.+..|+.+|.+ -|..++.++.+|..|+.+.+.-..-+
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345566666 4567789999998888776 45566778888999999999966 57788999999999988876666666
Q ss_pred HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcc--hHHHHHhh------------CChHHHHHhhcCC--CH-----
Q 003348 624 NANAIEPLIHVLQT-GSPEARENAAATLFSLSVIED--NKIKIGRS------------GAIGPLVDLLGNG--TP----- 681 (828)
Q Consensus 624 ~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~~------------g~I~~Lv~LL~s~--~~----- 681 (828)
+.|++..+..++-. .++..+..|+..|..|..+.- .|..|--. ..=+..|.++... ++
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccC
Confidence 77888888876654 457777777777765543211 11111000 0112222222211 11
Q ss_pred -HHHHHHHH-----------------------------------------------------------------------
Q 003348 682 -RGKKDAAT----------------------------------------------------------------------- 689 (828)
Q Consensus 682 -~~~~~Al~----------------------------------------------------------------------- 689 (828)
..+.....
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 00000001
Q ss_pred -----------------HHHHchh-cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcH
Q 003348 690 -----------------ALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGI 750 (828)
Q Consensus 690 -----------------aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I 750 (828)
|+..|.. .+.-..++-..|-+|.++..+ ..+..+-..|+.+|..|+.+.-+..+|.....+
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i 2090 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI 2090 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc
Confidence 1111111 122222233345555555443 122222246788899999998899999887777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhC-CHHhHHHHHhCCCHHHHHHhhcCC
Q 003348 751 PVLVEVVELGSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSG 802 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~-~~~~~~~v~~~g~v~~L~~LL~~g 802 (828)
..++..++..-. .---|+.+|-.+... .++.+...++.|.++.|+.|+...
T Consensus 2091 ~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2091 DGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 778887764322 222677777776654 345667778899999999999854
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.81 E-value=0.0068 Score=53.03 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=67.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH
Q 003348 628 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 628 l~~Lv~lL-~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
|+.|++.| ++++..++..++.+|..+- ...+++.|+.++++.++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899988 8888999999999998552 2366999999999999999999999999872 4
Q ss_pred hCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 003348 707 AGAVKHLVDLM-DP-AAGMVDKAVAVLA 732 (828)
Q Consensus 707 ~G~V~~Ll~LL-~~-~~~v~~~Al~~La 732 (828)
..+++.|.+++ ++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55888999988 33 3445677777764
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.075 Score=60.88 Aligned_cols=251 Identities=20% Similarity=0.146 Sum_probs=137.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN---- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~---- 617 (828)
..+.++|-..|++....++.++++.+..|+..+- -..+. ..+|..|-.+|.+.....+-.|+++|..|+.--.
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 4577888888887777899999999999887541 11111 2467888889999999999999999999974311
Q ss_pred -----cHHHHHHcC---CHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHHh-------------hCChHHHHH
Q 003348 618 -----NKSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-------------SGAIGPLVD 674 (828)
Q Consensus 618 -----~k~~I~~~g---~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~~-------------~g~I~~Lv~ 674 (828)
.-..|-+.+ ..-++..+|+.|+.+....-+..+-++.. .+..|..+++ ...+..|..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 122232221 23345667777765544443333333221 1111111110 011222222
Q ss_pred hh-cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHH----Hh
Q 003348 675 LL-GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAI----GQ 746 (828)
Q Consensus 675 LL-~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~---r~~i----~~ 746 (828)
.| +.|.-+.++.++.+| .++++..+...+.|+..|+.....-+. ...| ++
T Consensus 420 ~L~~eGg~eFK~~~Vdai----------------------sd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAI----------------------SDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHHhcccchHHHHHHHHH----------------------HHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 22 122333344443333 333333334444444443333221111 1111 11
Q ss_pred CC--------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 747 EN--------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 747 ~g--------~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+| .|..+...+--.+.-+|..|+.+|...+.+-. ..+....+...|.+.+.+.++.+|..|.-+|+.++
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 11 24444444433566788888888877666532 22333445667778888889999999999999998
Q ss_pred cc
Q 003348 819 NQ 820 (828)
Q Consensus 819 ~~ 820 (828)
..
T Consensus 555 ~~ 556 (898)
T COG5240 555 LS 556 (898)
T ss_pred hh
Confidence 54
No 124
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.18 Score=58.80 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=131.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHH----HHHhhcCC
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTA----LLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~-A~~a----L~nLs~~~ 616 (828)
....+.+.+.+.+.....+..+.+.+..+.++. .-..+.+.+++..|...+.......... +.-+ ..+|..
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-- 208 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-- 208 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC--
Confidence 456778888888888888999999999988854 3344566688888888886644333322 1111 111211
Q ss_pred ccHHHHHHcCCHHHHHHhh---cCCCHHH--------------------------------------HHHHHHHHHHhcc
Q 003348 617 NNKSAIANANAIEPLIHVL---QTGSPEA--------------------------------------RENAAATLFSLSV 655 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL---~s~~~e~--------------------------------------~~~Aa~aL~nLS~ 655 (828)
..+...++.+-.+| .+...++ +..++..|..++.
T Consensus 209 -----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 209 -----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred -----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 01112222222222 2222333 3444444444333
Q ss_pred CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003348 656 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 656 ~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
....+-...-..++|.|.+.|-+..+++++.+..+|..++..-+|.. =.-.+|.|++-+ ++. .-+.+++..|..-
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d---I~~~ip~Lld~l~dp~-~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD---IQKIIPTLLDALADPS-CYTPECLDSLGAT 359 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHhcCcc-cchHHHHHhhcce
Confidence 33222223333445555555555555555555555555544444433 111233333333 121 1122222222111
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHcc----CCHHHHHHHHHHHHHHhhCC--HHhHHHHHhCCCHHHHHHhhcCCCHHHHH
Q 003348 735 ATIPDGRVAIGQENGIPVLVEVVEL----GSARGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKE 808 (828)
Q Consensus 735 a~~~e~r~~i~~~g~I~~Lv~lL~s----~s~~~ke~Av~~L~~L~~~~--~~~~~~v~~~g~v~~L~~LL~~g~~r~r~ 808 (828)
... +.+++..+..++.+|+. .+...+..++.+++|+|.-- +....-.+ .-.+|.|-..+....|.+|.
T Consensus 360 tFV-----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 360 TFV-----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eee-----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHH
Confidence 110 01123345555555543 45667789999999999865 32222222 23577777777777899999
Q ss_pred HHHHHHHHhh
Q 003348 809 KAQALLSYFR 818 (828)
Q Consensus 809 kA~~lL~~L~ 818 (828)
.|...|.-+.
T Consensus 434 vaarAL~~l~ 443 (569)
T KOG1242|consen 434 VAARALGALL 443 (569)
T ss_pred HHHHHHHHHH
Confidence 9888884443
No 125
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.69 E-value=0.00083 Score=75.03 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=45.1
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhc----CCCCCCCCCCcCCCCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~l 289 (828)
.+..|-+|.+.-+||+...|.|+|||-||.+|... .+-+||.|..+|+.+.-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 35789999999999999999999999999998763 35689999998887643
No 126
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.67 E-value=0.0042 Score=46.11 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.8
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003348 576 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 576 ~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
+++..+.+.|+++.|+.+|.+++++++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
No 127
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00071 Score=71.16 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=45.7
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003348 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
|.|-||.+.|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~ 298 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVS 298 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHH
Confidence 7899999999999999999999999999998876 569999886544 33344444333
No 128
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00098 Score=78.93 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=41.7
Q ss_pred CCcccccCccccccC-----CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 237 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 237 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
..+-.|+||.+.|.. |-.++|||.|...|+.+|+++. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7789999999999999999984 7899999843
No 129
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.13 Score=60.64 Aligned_cols=254 Identities=16% Similarity=0.215 Sum_probs=156.3
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCcc
Q 003348 540 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 540 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
+.+-..+.|++.|..+++.+|..|+..|+.||+.+|.|.-.+ -|.+..+|.+ .+.=+....+....+|+--+.-
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR 252 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence 446678999999999999999999999999999998886655 4777777754 3444566666777777543321
Q ss_pred HHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHH--hcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003348 619 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFS--LSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~n--LS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
.-...+++|..++.+.. +.+...+..++.. ++. .+++-..+ .-++..|-.++.+.++..+..++.|+..+
T Consensus 253 ----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 253 ----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred ----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 12246889999988765 4455555555543 222 11222221 13466777778888999999999999988
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHHH
Q 003348 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAAL 772 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~Av~~L 772 (828)
.-.+.-. +.+ --..+++.| +.+..++-+|+.+|.-+.... +-.+ .+..|+..+...+ ..-+..-+.-+
T Consensus 327 ~ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 327 LKTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred hhhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHH
Confidence 7644321 111 113456666 677889999999998776532 2222 2455555543322 35566666667
Q ss_pred HHHhhCCHHhHHHHHh-CCCHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 003348 773 LQLCTNSSRFCSMVLQ-EGAVPPLVALSQS-GTPRAKEKAQALLSY 816 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~-~g~v~~L~~LL~~-g~~r~r~kA~~lL~~ 816 (828)
..+|+.+.- ..+.. +-.+..|++|.+- |+..+...|..++..
T Consensus 397 I~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 397 ISICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 777776531 22222 3345555555443 244444444444443
No 130
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.49 E-value=0.046 Score=53.75 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=99.4
Q ss_pred HHHhhCChHHHHHhhcCCC------HHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC---CChHHHHHHHHHHH
Q 003348 662 KIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLA 732 (828)
Q Consensus 662 ~I~~~g~I~~Lv~LL~s~~------~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~---~~~~v~~~Al~~La 732 (828)
.+...+++..|+.++.++. ......++.++..|..+.-..+..+....|..++..+. .+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4556789999999999886 37778899999999888777888899999999999882 35778999999999
Q ss_pred HHhCCchhHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 733 NLATIPDGRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 733 nLa~~~e~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
+++.+....- .+.++=.++.|+..|+..++..+.+|++.+-.|....+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999777644 44444459999999999999999999999999877654
No 131
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.14 Score=55.29 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=162.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Ccc----HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSIN-DNN----KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~----k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
..|.|-.=|..++..+..-++..++-+..+ +.| ...++.+|.++.++..+...+.++...|...|..++.++..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 344444445566777777777777666544 322 233457899999999999999999999999999999988877
Q ss_pred HHHHhhCChHHH--HHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHh
Q 003348 661 IKIGRSGAIGPL--VDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLA 735 (828)
Q Consensus 661 ~~I~~~g~I~~L--v~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa 735 (828)
..|.+...+..+ +++--..+.-++...+..+..+.+ .++.....-..|.+..|..-|. .+.-+.-.++.....|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 777776655543 333333344455556666666655 4555555667898888877673 33445677888899999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC------H-HhHHHHHhCCCHHHHHHhhcCCCHHH
Q 003348 736 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS------S-RFCSMVLQEGAVPPLVALSQSGTPRA 806 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~------~-~~~~~v~~~g~v~~L~~LL~~g~~r~ 806 (828)
...-+++.+.+.|.|..+..++.. .+|-.+-.+......+-... + ..|+... -.+..-++++...++.+
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchH
Confidence 999999999999999999999964 45666665655544433321 1 1122211 24566677788888999
Q ss_pred HHHHHHHHHHhhccccc
Q 003348 807 KEKAQALLSYFRNQRHG 823 (828)
Q Consensus 807 r~kA~~lL~~L~~~~~~ 823 (828)
.+.|...|..|-..-+|
T Consensus 321 ieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEG 337 (524)
T ss_pred HHHHHHHHHhccCCcch
Confidence 99999999888766554
No 132
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.18 Score=59.86 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=172.1
Q ss_pred hhhHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc-C
Q 003348 541 IETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSI-N 615 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~-~q~~Al~~L~~La~~s~~nr~~i~~~-GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~-~ 615 (828)
+.+.+..|+.......+. ++..++..|..++.+= .-....... .++-.++.-..+ ++..++-.|+.+|.|--. -
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 457888888888766555 7778889999988852 222333332 445555554433 467789999999988521 1
Q ss_pred CccHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 616 DNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 693 (828)
Q Consensus 616 ~~~k~~I~~~g-~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~n 693 (828)
..|-..=.+.+ .+...++.-.+++.+++..|..+|..+.. +.+.-..-.....+..-+.-+++.++++...|...=.+
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11111111112 22334555567788899999999988754 22222222223344555566778888888888887777
Q ss_pred chhcchh----HHHHHH---------------hCcHHHHHHhc-C--CC-----hHHHHHHHHHHHHHhCCchhHHHHHh
Q 003348 694 LSIYHEN----KARIVQ---------------AGAVKHLVDLM-D--PA-----AGMVDKAVAVLANLATIPDGRVAIGQ 746 (828)
Q Consensus 694 Ls~~~~n----~~~iv~---------------~G~V~~Ll~LL-~--~~-----~~v~~~Al~~LanLa~~~e~r~~i~~ 746 (828)
+|...-. -..+++ .+++|.|+++| . ++ ......|-..|..++.. ....|+.
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~ 363 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVP 363 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchh
Confidence 7662211 011111 36788899988 2 11 12334444444444331 1112222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 747 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 747 ~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.++|.+-+-+++++.+.++.|+.+...+-.+....+..-+..++++.++.++.+.+--+++.+.+.|..+.+.
T Consensus 364 -~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 364 -HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred -hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 3455555667789999999999999998887766666656678999999999977778889999988776554
No 133
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.41 E-value=0.0061 Score=45.20 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=36.0
Q ss_pred cchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 657 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 657 ~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
++++..+.+.|+++.|+++|++++.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888899999999999999999999999999999863
No 134
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.11 Score=63.19 Aligned_cols=215 Identities=16% Similarity=0.145 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcC-CccH---HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH-HhccCcchHHHHHhhCChHHHHHhhc
Q 003348 603 ENAVTALLNLSIN-DNNK---SAIANANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 603 e~A~~aL~nLs~~-~~~k---~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~-nLS~~~e~k~~I~~~g~I~~Lv~LL~ 677 (828)
.+-++||.-|+.. +-+. ..-..-|.+|.++++|++...+.+..-+-+=. -|+.++..+..+++.++-...+..|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 4445555555432 2232 22335599999999999998888765444333 36778888888998877777888887
Q ss_pred CC---CHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhCCcH
Q 003348 678 NG---TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI 750 (828)
Q Consensus 678 s~---~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~~--~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I 750 (828)
.+ +++-+..|+-.|.-++. ++-.+....+.+.+...++.|.. .+-++.-++-.|..|=. +++.|-.=++.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 73 46888888889998888 45566677788999988888843 24445556666666655 55555555678889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCC----HHhHHHH-----------HhCCCH----HHHHHhhcCCCHHHHHHHH
Q 003348 751 PVLVEVVELGSARGKENAAAALLQLCTNS----SRFCSMV-----------LQEGAV----PPLVALSQSGTPRAKEKAQ 811 (828)
Q Consensus 751 ~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~----~~~~~~v-----------~~~g~v----~~L~~LL~~g~~r~r~kA~ 811 (828)
..|..+|....+++|..|+.+|..+..+. ++....+ .-+..+ ..|+.++..+++-++...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999988753 2221111 112223 3778888889988886655
Q ss_pred HHHHHh
Q 003348 812 ALLSYF 817 (828)
Q Consensus 812 ~lL~~L 817 (828)
..|..+
T Consensus 725 v~ls~~ 730 (1387)
T KOG1517|consen 725 VALSHF 730 (1387)
T ss_pred HHHHHH
Confidence 555544
No 135
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.40 E-value=0.015 Score=53.01 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHH--ccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003348 724 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 724 ~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL--~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
....+.+|+|||. ++..+..+.+.|+++.++... ...+|-.+|+|++++.+||.++++.++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999998 778889999999999999876 4579999999999999999999988887765
No 136
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.40 E-value=0.021 Score=58.33 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHh----------------CcHHHHHHhc-C------CChHHHHHHHHHHHHHhC
Q 003348 680 TPRGKKDAATALFNLSIYHENKARIVQA----------------GAVKHLVDLM-D------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~----------------G~V~~Ll~LL-~------~~~~v~~~Al~~LanLa~ 736 (828)
.......++..|.||+..+..+..++.. ..+..|++++ . ....-.+..+.+|+|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445667888999999988888766542 2566777766 3 223456789999999999
Q ss_pred CchhHHHHHhC--Cc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--CCCHHHHHHhhc
Q 003348 737 IPDGRVAIGQE--NG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQ 800 (828)
Q Consensus 737 ~~e~r~~i~~~--g~--I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~--~g~v~~L~~LL~ 800 (828)
.++||..+.+. +. +..|+.++.+.+..-|..++.+|.|+|.....+...+-. .++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999874 34 778888888889999999999999999988766444443 367777777666
No 137
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.33 E-value=0.0043 Score=54.05 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=35.2
Q ss_pred cccccCccccccC-Ceec-CCCcchhHHHHHHHHhc--CCCCCCCCCCcCC
Q 003348 239 DFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDL--GLFVCPKTRQTLA 285 (828)
Q Consensus 239 ~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~ 285 (828)
+-.||.|..-=.| |++. .|||.|-..||.+|+.. ...+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3446655554444 6664 79999999999999985 3567999999864
No 138
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.31 E-value=0.0027 Score=68.06 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCcccccCccccccC--Cee--cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003348 236 IPSDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
-...|.|||++..|.. +.+ .+|||.|...+|.+-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3568999999999954 333 5999999999999983 2356999999999987764
No 139
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.28 E-value=0.0017 Score=64.17 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.7
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
|.|-||.+=++.||++.|||.||-.|-.+-++.| .+|-+|+....-
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 9999999999999999999999999988877766 679999876443
No 140
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.19 E-value=0.0045 Score=64.29 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=47.2
Q ss_pred CcccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCCCCCc----CCCCCCCCcHHHHHHHH
Q 003348 238 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIA 300 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~----l~~~~l~pN~~l~~~i~ 300 (828)
-+++|||+......||+ ..|||.|+|..|+.++... ...||+-|.. +....+.+...++..|+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr 243 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR 243 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence 45899999999999998 5799999999999998752 2349998766 22345555555555544
No 141
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.18 E-value=0.46 Score=56.26 Aligned_cols=233 Identities=14% Similarity=0.125 Sum_probs=142.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH---HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR---MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr---~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~- 617 (828)
...+...+..|++.++.++.+|+..+..++..- .++ ..++..|.| |-..|..+.+++.-..+.+|..+...-.
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 345667788899999999999999999888742 122 234444543 5677778889988776666655532110
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
.+..=--.+.+|.|.-+|++....++++....+..++..........+ ..+--.|+++|+..+.+.+++|..++..++.
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 010001247899999999999999999999999988763322111111 1333468888888888888888887777655
Q ss_pred c---chhHHH---------------------HHH--hC---cHHHHHHhc-CCChHHHHHHHHHHHHHhC--CchhHHHH
Q 003348 697 Y---HENKAR---------------------IVQ--AG---AVKHLVDLM-DPAAGMVDKAVAVLANLAT--IPDGRVAI 744 (828)
Q Consensus 697 ~---~~n~~~---------------------iv~--~G---~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--~~e~r~~i 744 (828)
. ++.-.. ++. .| ++|.|+.=- .++..++...+.+|..+=. ++-++..|
T Consensus 955 aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 1 111100 111 11 222222211 2444455555555554432 12222222
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
. ...|.|-+-|...+..-+.-|+.++.+|+-+.
T Consensus 1035 y--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1035 Y--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred H--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 2 24566666677778888888999998888764
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.25 Score=58.67 Aligned_cols=235 Identities=13% Similarity=0.130 Sum_probs=148.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh----------------hHHHHHh--cCcHHHHHHHHcCC-------C
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMD----------------NRMVIAN--CGAINILVDMLHSS-------E 598 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~----------------nr~~i~~--~GaI~~Lv~lL~s~-------d 598 (828)
....-+..+++.+.++..++......++.+.-+ +..+... .+.+|.|+.+|.+. +
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 444556677899999888888777766543211 1112111 27888999988652 2
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH----hhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHH
Q 003348 599 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH----VLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLV 673 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~----lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv 673 (828)
......|..+|.-++.. +....+++++. -+++++..-++.|+-++.++-..++ .+..-...+++|.++
T Consensus 340 Wnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 22445555666544321 12223444333 5567888889988888888765443 344445569999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHchhc-chhH-HHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC--CchhHHH----HH
Q 003348 674 DLLGNGTPRGKKDAATALFNLSIY-HENK-ARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT--IPDGRVA----IG 745 (828)
Q Consensus 674 ~LL~s~~~~~~~~Al~aL~nLs~~-~~n~-~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~--~~e~r~~----i~ 745 (828)
.++.+.+.-++..++|+|+.++.. ++.+ ....-.+.++.++.-|...+.+..+++|++-+|+. .+..+.. ..
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 999988888899999999999883 3222 22344677788888787888999999999999984 1111111 21
Q ss_pred hCCcHHHHHH-HH---cc---CCHHHHHHHHHHHHHHhhCCHHhHHHH
Q 003348 746 QENGIPVLVE-VV---EL---GSARGKENAAAALLQLCTNSSRFCSMV 786 (828)
Q Consensus 746 ~~g~I~~Lv~-lL---~s---~s~~~ke~Av~~L~~L~~~~~~~~~~v 786 (828)
. ...+.++. ++ .. .....|-.|-.+|..|..++++.+..+
T Consensus 493 t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 493 T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 1 22333333 22 21 234567777788888888776554433
No 143
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.14 E-value=0.27 Score=52.95 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHH-HHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHH
Q 003348 556 SLDTQREATAELRLLAKHNMDNRMV-IANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL 631 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~-i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~k~~I~~~-g~l~~L 631 (828)
++-.+.-|+.++..+... ++.|.. .++..+-..++.+++. .+.++|.+.+-++.-|+.++.....|-.. ..+.-|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444566788999998884 455544 4555555667777765 46789999999999998887655444332 567777
Q ss_pred HHhhcCCC-HHHHHHHHHHHHHhccCcchHHHH---HhhCChHHHHHhhcCC---CHHHHHHHHH---HH----HHchhc
Q 003348 632 IHVLQTGS-PEARENAAATLFSLSVIEDNKIKI---GRSGAIGPLVDLLGNG---TPRGKKDAAT---AL----FNLSIY 697 (828)
Q Consensus 632 v~lL~s~~-~e~~~~Aa~aL~nLS~~~e~k~~I---~~~g~I~~Lv~LL~s~---~~~~~~~Al~---aL----~nLs~~ 697 (828)
+.+.+... ..+-.-+++++.|+.. ...|..| +-.|-+...+++|..+ +.+.+.+--. .| ..||..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777654 4466677788888765 2333333 3346566777777543 3333221110 00 011111
Q ss_pred ------------------------chhHHHHHH--hCcHHHHHHhcCCC--hHHHHHHHHHHHHHhC-CchhHHHHHhCC
Q 003348 698 ------------------------HENKARIVQ--AGAVKHLVDLMDPA--AGMVDKAVAVLANLAT-IPDGRVAIGQEN 748 (828)
Q Consensus 698 ------------------------~~n~~~iv~--~G~V~~Ll~LL~~~--~~v~~~Al~~LanLa~-~~e~r~~i~~~g 748 (828)
+.|...+.+ ..++..|.+++..+ .....-|+.=+..+.. .|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 234444444 34778888888322 2233445555555555 899999999999
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+-+.+++++.+.+++++-.|..++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999887653
No 144
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.079 Score=61.75 Aligned_cols=216 Identities=19% Similarity=0.163 Sum_probs=137.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc------CCc
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI------NDN 617 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~------~~~ 617 (828)
...-|+....+.+..++..|+..|..|.....-.+. .....+..+.+++..++..|+..+...+. ...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 334488888888999999999999888764432222 34567788888888999888777655432 111
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------------------------------------
Q 003348 618 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--------------------------------------- 658 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--------------------------------------- 658 (828)
+-..-....++..+++.++..+..+|..|+.+|..+-...+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11111223467788888888887777777766654322111
Q ss_pred ------------hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHH
Q 003348 659 ------------NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVD 725 (828)
Q Consensus 659 ------------~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~ 725 (828)
....|...|+-..+|.=|.+.--+++++|+..++.|+.+... -...++..|++++ ++...++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHH
Confidence 112233344455566666666678888888888888774432 2234566788888 44466777
Q ss_pred HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003348 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
.|+.+|..|+.+-. ++..-++.+.+-|...++.+|+..-..|.+
T Consensus 429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888888877622 233446677777777777777766555544
No 145
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0038 Score=68.35 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=38.7
Q ss_pred ccccCccccccCC--e-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 240 FCCPLSLELMTDP--V-IVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 240 f~CpI~~~lm~dP--V-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
+.|-||+|-+++= | ++||+|.|=..||..|+......||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 7999999988753 3 5899999999999999998766799998843
No 146
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0043 Score=64.79 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCcccccCccccccCCeec-CCCcchhHHHHHHHHhcC-CCCCCCCCCcCC
Q 003348 237 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 285 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 285 (828)
-.+-.||+|++-..-|.++ +|||.||.-||..-+.-. ..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999999987 599999999999876643 468999998754
No 147
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.087 Score=63.86 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcc-CcchHHHHHh----hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHH
Q 003348 642 ARENAAATLFSLSV-IEDNKIKIGR----SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 715 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~-~~e~k~~I~~----~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~ 715 (828)
-.+.++.+|.|+.. +++....++. .|.++.+..+|... ++++++.|+..+.-++.+.++...++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45567788888754 5554444432 37888888888765 789999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhC
Q 003348 716 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 716 LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|++-+..++.++.+|..|+++++...+.++.|++..+..++ .+.++..+..|+..+..|...
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999889999999999999999988877777778766666655 678899999999999998875
No 148
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.18 Score=60.23 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=162.9
Q ss_pred HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCccHHHHHHcCCHHHHHHhhcCCC-HHHHHHH
Q 003348 569 LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENA 646 (828)
Q Consensus 569 ~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~-nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~-~e~~~~A 646 (828)
.++......|...++.|+...|+.+..-..++....+..+|. .+++.- .+ ....++++...+.+.. .--...+
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 334334566777788899999999998877777777777776 222211 11 1134445555544332 1233467
Q ss_pred HHHHHHhccCc-chHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH-H-hCcHHHHHHhcC-CChH
Q 003348 647 AATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q-AGAVKHLVDLMD-PAAG 722 (828)
Q Consensus 647 a~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv-~-~G~V~~Ll~LL~-~~~~ 722 (828)
+.++.||+... ..|..|...-+++.+-.++-..++..+..++..+.||...+..-.+.+ + ...++.....++ ....
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 88899998854 457778887677777777888899999999999999999887665544 3 345555555553 3334
Q ss_pred HHHHHHHHHHHHhCCchh-HHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc
Q 003348 723 MVDKAVAVLANLATIPDG-RVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 723 v~~~Al~~LanLa~~~e~-r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~ 800 (828)
..-.++++++.+....++ +..+.+ ..+...++.++.+.++.+|...+.+.+++.....+....+.....++.+..+-.
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445566777766664433 332433 456788899999999999999999999977777677777777777766666544
Q ss_pred CCCHHHHHHHHHHHHHh
Q 003348 801 SGTPRAKEKAQALLSYF 817 (828)
Q Consensus 801 ~g~~r~r~kA~~lL~~L 817 (828)
-.....++.|...|...
T Consensus 723 ~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 723 LNRAPKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhhhhHHHHH
Confidence 44455666665555443
No 149
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.12 Score=61.32 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=159.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN---- 617 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~---- 617 (828)
.+.+++-..+++-...+..+|++.+..|...+. +.+. .++..|-.+|.+..+-++..|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456777788888888889999999999977543 2222 2888899999999999999999999988742 21
Q ss_pred -c---HHHHHHc---CCHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcchHHHHH-------------hhCChHHHHHh
Q 003348 618 -N---KSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIG-------------RSGAIGPLVDL 675 (828)
Q Consensus 618 -~---k~~I~~~---g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e~k~~I~-------------~~g~I~~Lv~L 675 (828)
| -..|-+. -+-..+..+|+.|+......-...+.+... .+++|..++ ..+.+..|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 1222222 244556778888876554444443333322 233332211 12556667677
Q ss_pred hcC-CCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003348 676 LGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 676 L~s-~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
|++ |.-+.+++...++..+.. +++.|. -++..|.+.+. +.+....+..+|..|.. +|-.+......+..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIE-Dce~~~i~~rILhlLG~--EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIE-DCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHH-hccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence 654 345666666666666555 444333 23344555442 22334455555555543 121122223345555
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 754 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 754 v~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
.+.+--.+..++-.|+.+|..+..+++ .....+.-.|.+.+.+.+..+|+.|...|+.+..
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 555555677889999999999885543 1233455667777778889999999999998873
No 150
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.96 E-value=0.049 Score=53.20 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHhhhccccchhhHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHh
Q 003348 16 FLHLSSFDSIKLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQ 95 (828)
Q Consensus 16 ~~~~~~~~~~~~~~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~ 95 (828)
+...+..+..+...||--+.++..-++.|.|+++||...+.-++.....-++.|...|++|+.|++.|. ..+-|=++.
T Consensus 18 Llk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s--k~~r~n~~k 95 (147)
T PF05659_consen 18 LLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS--KVRRWNLYK 95 (147)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc--cccHHHHHh
Confidence 334455556677788899999999999999999999877644455457889999999999999999986 356677788
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 003348 96 VESLMSKIRTSGLDIMLQLKS 116 (828)
Q Consensus 96 ~~~i~~~f~~~~~~l~~~L~~ 116 (828)
-..+..+++++-.+|...++.
T Consensus 96 k~~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 96 KPRYARKIEELEESLRRFIQV 116 (147)
T ss_pred hHhHHHHHHHHHHHHHHHhcc
Confidence 888999988888888885553
No 151
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.44 Score=55.64 Aligned_cols=218 Identities=18% Similarity=0.173 Sum_probs=143.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..++..|++.+..+++.+|+....+|..+...... ....-+.+.+..++......-+..|...+..+..+ ..-..
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIES 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhh
Confidence 46789999999999999999999998877653221 11224567788888877777778888888777543 22344
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHH-----HHHHhccCcchHHHHHhhCChHHHHHhh---cCCCHHHHHHHHHHHHH
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAA-----TLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFN 693 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~-----aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~s~~~~~~~~Al~aL~n 693 (828)
+.+.+.+..|...+..........++. ...+|.. ..+...++.+-.+| .+....++..|..+...
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-------PFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-------CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 556678888888887654333222221 1122221 11224444444444 34456677766666555
Q ss_pred chhcchhHHHHHHhCcHHHHHH-----hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003348 694 LSIYHENKARIVQAGAVKHLVD-----LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~-----LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
+.. -+...+|+.++. +++........++.+|..++.+....-...-...||.+.+.|-+..+++|+.+
T Consensus 243 i~~-------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 243 IMR-------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred HHH-------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 432 122333333333 22334455678899999999988888778878899999999999999999999
Q ss_pred HHHHHHHhhC
Q 003348 769 AAALLQLCTN 778 (828)
Q Consensus 769 v~~L~~L~~~ 778 (828)
..+|..+|.-
T Consensus 316 ~~~l~~~~sv 325 (569)
T KOG1242|consen 316 IETLLKFGSV 325 (569)
T ss_pred HHHHHHHHHh
Confidence 9999999873
No 152
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.82 E-value=0.52 Score=55.78 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=101.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHH---HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003348 669 IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR---IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 669 I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~---iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
+..++..|++.++.++..|+..+..|+..-.+|.. +...|+| |.+.| +..+++.--.++++..++..-..-...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 55667788889999999999999999875555532 3334443 66777 455666666666666555422111111
Q ss_pred -HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 745 -GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 745 -~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
=-.+.+|.|.-+|++...+++++++..+..+|..++++...--=..+---|+++|.+.+..+|+.|...+..+.
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 01357899999999999999999999999999988763322111234455788888888888888877655443
No 153
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.1 Score=62.04 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
++.....|.+.+++.++.+++.|+....++-.. +.......|.++.|-.++.+.++.|..+|+.+|..+.....+..
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 456778899999999999999999999888553 45566778999999999999999999999999999865433211
Q ss_pred H-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcch
Q 003348 621 A-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 621 ~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~ 699 (828)
. ....-.+..++..|..-+.=.+...+.++.+-...+. +. ....+..+...|++.+..+...+..++.++.....
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE---AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh---HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 0 0011122223333322122222222222222222222 11 11345666667777777777777777777766555
Q ss_pred hHHHHHHhCcHHHHHHhcCC
Q 003348 700 NKARIVQAGAVKHLVDLMDP 719 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL~~ 719 (828)
.....+-..+-+.|+.+++.
T Consensus 272 ~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred HHHHHHHHHhcccceeeecc
Confidence 44444445555566666643
No 154
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.79 E-value=0.34 Score=58.79 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=134.7
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHH-HHHHHHHHhhcCCc
Q 003348 539 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE-NAVTALLNLSINDN 617 (828)
Q Consensus 539 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e-~A~~aL~nLs~~~~ 617 (828)
.+....+..|++.|...+.++|..|+++|.-|+..-++.+.. -.++.|+.=+-++-...+. .++.....++.-+.
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 445678999999999999999999999999998654333321 1233444322222222222 22222222222222
Q ss_pred cHHHHHHcCCHHHHHHhhcCCC------HHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 003348 618 NKSAIANANAIEPLIHVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s~~------~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
.-.......+++.+...|.++. ..++..++..|..+-. ..+.-.. ...+.+..++.-|.+.-..+++.|+.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 2222333444555555554332 2255555555543221 1110000 123556677777777778899999999
Q ss_pred HHHchhcchhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH---ccCCHHHH
Q 003348 691 LFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGK 765 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL---~s~s~~~k 765 (828)
|..|+..-.. .+-.+++..|++=|. .....+.--+..|+.+|.....|---.-...+|.+.++. +..+++.+
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 9999874322 245567777777663 334444555566666665433332111234688888888 66889999
Q ss_pred HHHHHHHHHHhhCCH
Q 003348 766 ENAAAALLQLCTNSS 780 (828)
Q Consensus 766 e~Av~~L~~L~~~~~ 780 (828)
|.+.-++-.+-...+
T Consensus 275 E~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHHHHHhCh
Confidence 999888877766554
No 155
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0062 Score=65.73 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=38.9
Q ss_pred CcccccCccccc-cCC------------eecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 238 SDFCCPLSLELM-TDP------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 238 ~~f~CpI~~~lm-~dP------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
+|=.|-||.+=| .-| =-+||||.+--.|++.|+++. .|||.||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence 567899999664 333 579999999999999999986 7899999995
No 156
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.1 Score=60.88 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=116.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc------chHHH
Q 003348 589 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE------DNKIK 662 (828)
Q Consensus 589 ~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~------e~k~~ 662 (828)
-|+.+....|..|+.+|+.+|+.|+..-.-- .-.....++.++.....+|..|+.+++-.+... ++...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 3777788889999999999998886421111 123455678888888889999988877654321 11111
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcc-hhHHHH-------------------------------------
Q 003348 663 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARI------------------------------------- 704 (828)
Q Consensus 663 I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~-~n~~~i------------------------------------- 704 (828)
=....++..+.+.+.+.+..++..|+.+|..+-... +...+-
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 112356777888888887777777777777664421 111111
Q ss_pred -------------HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 003348 705 -------------VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 770 (828)
Q Consensus 705 -------------v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~ 770 (828)
+..|+.-+++.=| ++--+++..|+..+..|+.+..+-. ...+..|+++++..-..+|..|..
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122223333333 2224677788888888887433211 124778899999888999999999
Q ss_pred HHHHHhhC
Q 003348 771 ALLQLCTN 778 (828)
Q Consensus 771 ~L~~L~~~ 778 (828)
+|..++.+
T Consensus 433 aL~~Is~~ 440 (823)
T KOG2259|consen 433 ALTMISVH 440 (823)
T ss_pred HHHHHHHH
Confidence 99998876
No 157
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.74 E-value=0.004 Score=68.17 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHH
Q 003348 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKW 269 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~ 269 (828)
-+++.||||...|+||+|++|||+.||.|-...
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 378999999999999999999999999996643
No 158
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.72 E-value=2.5 Score=44.39 Aligned_cols=176 Identities=17% Similarity=0.148 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCcchH--HHHHhhCChHHHH
Q 003348 601 IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLV 673 (828)
Q Consensus 601 v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~-----~~e~~~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~Lv 673 (828)
=..+|+..|--++.+++.|..+..+..--.|-.+|..+ .+..|..+++++..|..+++.- ..+...+++|.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 44567777777788999999999886544555666543 3668999999999998866543 3344569999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH----hCcHH----HHHHhc--CCChHHHHHHHHHHHHHhCCchhHHH
Q 003348 674 DLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AGAVK----HLVDLM--DPAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 674 ~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~----~G~V~----~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
+.+..|+...+..|...+..+..++.+-..+.. --+|. .++.-+ .++..+...++.+.-+|+.++..|.+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999888776654433322 22222 222222 46778889999999999999999988
Q ss_pred HHh---CCcH-HHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 744 IGQ---ENGI-PVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 744 i~~---~g~I-~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+.. .+.- .....+++ .++..+..-...+.++|.
T Consensus 255 L~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 255 LRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 864 1111 12222333 445555555555555553
No 159
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.16 Score=61.45 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+....+.+++.+.+.+.++++-.-.-|..+++..++- ++ =+++.+.+=++++++.++-.|++.|..+-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--AL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 4556788888888889998888888888888877622 22 2577888888999999999999999766211
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
. .-...++++.+.+.++++.+|.+|+-+++.+=. -.+..+.+.|.+..+..++.+.++.++.+|+.+|+.+...
T Consensus 123 e-l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 123 E-LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred H-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1 122468899999999999999999999998842 2344555668999999999999999999999999987543
No 160
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.007 Score=62.01 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=47.3
Q ss_pred CcccccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003348 238 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
..|.||+|.+.+.+-+ +-+|||.|+..|.++.+... ..||+|+.++..+++++=
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 6799999999988865 35899999999999999865 679999999999999873
No 161
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.61 E-value=0.44 Score=55.27 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=138.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh---HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
...|...+..|++..+.++.+|+.....|++.= .+ -..+...|.| |-.-|..+.+++.-..+.|+..+......
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 457888999999999999999998888877631 11 1223333432 44556667888887777777665321111
Q ss_pred H-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 619 K-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 619 k-~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+ -+---.|.+|.|..+|++....+..+..+.+..++.....+.-..+ ..+--.|+++|++.+.+.+++|..++..++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 1111348899999999999999999999988888764332211111 1334468889999999999988888777765
Q ss_pred c--c-hh-------------HHHH--------H-H-hC---cHHHHHHhc-CCChHHHHHHHHHHHHHhCC--chhHHHH
Q 003348 697 Y--H-EN-------------KARI--------V-Q-AG---AVKHLVDLM-DPAAGMVDKAVAVLANLATI--PDGRVAI 744 (828)
Q Consensus 697 ~--~-~n-------------~~~i--------v-~-~G---~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~--~e~r~~i 744 (828)
. + +. +.+. + + .| ++|.|+.=- .++..++...+.+++.+=.. ...+..+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 11 1111 1 1 11 222222111 23344444444444443221 1111111
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
....|.|-+.|...++.-+.-|..++.+|+-+.
T Consensus 840 --y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 840 --YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred --HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 123456666666677888888888888887664
No 162
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.0076 Score=61.75 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=33.4
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhc
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL 272 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~ 272 (828)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5556689999999999999999999999999999864
No 163
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.52 E-value=0.13 Score=50.73 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=98.2
Q ss_pred HHHHHhCcHHHHHHhcC-CC------hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHH
Q 003348 702 ARIVQAGAVKHLVDLMD-PA------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAAL 772 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL~-~~------~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~Av~~L 772 (828)
..++..|++..|+.+++ .. ..+...++.++..|-.+.-.--...+..+|..++.++... +..+...|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 46788999999999983 22 3566778888888888755444566677889999998753 588999999999
Q ss_pred HHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 773 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 773 ~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
-+++.+++.....|.++=-++.|+..++..++.++.+|..++..|-..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999999998788888888899999999999999999999998877543
No 164
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.54 Score=58.52 Aligned_cols=216 Identities=17% Similarity=0.197 Sum_probs=130.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cchHHHHHhhCChH
Q 003348 595 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG 670 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~--g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~--~e~k~~I~~~g~I~ 670 (828)
++.+..+|..+-.+|..++..+.......+. .....|..-+++.....+...+.+|..|-.- .+....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 4457889999999999987664443333221 2233344444444455555556665555321 1222222 24466
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC------cHHHHHHhcC---CChHHHHHH--HHHHHHHhCCch
Q 003348 671 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLMD---PAAGMVDKA--VAVLANLATIPD 739 (828)
Q Consensus 671 ~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G------~V~~Ll~LL~---~~~~v~~~A--l~~LanLa~~~e 739 (828)
.++-.++..+...++.|..+|..|+. .....+.| .|...+.++. .+......+ +-++..+.. +
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--e 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--E 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--H
Confidence 66666688899999999999999874 11122222 3333333331 111111222 222222222 1
Q ss_pred hHHHHHhC----CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 740 GRVAIGQE----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 740 ~r~~i~~~----g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
.. .+++. +.+..+...|.++++.+...|+..+..++...++.+-.-..+-+++.+..+++..+-.+|.++..+|.
T Consensus 816 ~~-~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FK-NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred Hh-ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11 12222 34556666677899999999999999999988865444444558999999999999999999999888
Q ss_pred Hhhc
Q 003348 816 YFRN 819 (828)
Q Consensus 816 ~L~~ 819 (828)
.|-+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 7754
No 165
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.51 E-value=0.05 Score=49.59 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcC-CccHHHHHHc
Q 003348 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSIN-DNNKSAIANA 625 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~ 625 (828)
+...++.|.+|+..++.++..+.+.|+||.+++...- .+|.+++.|+.++.||+.+ ++|+..|.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567888999999999999999999999999997754 5799999999999999865 6788877653
No 166
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0054 Score=65.52 Aligned_cols=53 Identities=23% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCcccccCccccccCCeecC-CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003348 236 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.|+.=.||+|..--.+|-++. +|..||-.||-.|..+ +.+||+|+.|..-.++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 455668999998888887765 6999999999999994 5779999988765443
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.54 Score=56.95 Aligned_cols=167 Identities=20% Similarity=0.167 Sum_probs=118.7
Q ss_pred hcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 003348 552 LKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 630 (828)
Q Consensus 552 L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~ 630 (828)
+.+.+...+..|.+.+- .++.+.+ -- -..+-+++...+.|.++..-.--=|.+.+........+ +++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 55666777777776654 4444332 11 23556666666777777766666666666544322222 4677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003348 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
+.+=|.++++.+|..|+.++..|=. +.. -..+++++.+++.++++.+++.|+-|+++|-. -.+....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHH
Confidence 8888899999999999999987621 111 12468899999999999999999999999743 334456788999
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 003348 711 KHLVDLM-DPAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 711 ~~Ll~LL-~~~~~v~~~Al~~LanLa~~ 737 (828)
..+..++ ++++.++..|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999988 78888999999999987653
No 168
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.22 E-value=0.082 Score=54.00 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHH----------------cCCHHHHHHhhcCC------CHHHHHHHHHHHHHhcc
Q 003348 598 ETKIQENAVTALLNLSINDNNKSAIAN----------------ANAIEPLIHVLQTG------SPEARENAAATLFSLSV 655 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~~----------------~g~l~~Lv~lL~s~------~~e~~~~Aa~aL~nLS~ 655 (828)
.......+++.|.||+..+.....+.. ..++..|+..+..| ...-..+.+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556778888888877666554432 23677788777652 23456788999999999
Q ss_pred CcchHHHHHhh--CC--hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHh---CcHHHHHHhc
Q 003348 656 IEDNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA---GAVKHLVDLM 717 (828)
Q Consensus 656 ~~e~k~~I~~~--g~--I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~---G~V~~Ll~LL 717 (828)
.++.|..+... +. +..|+.++.+.+..-+.-++.+|.|+|...+....+... +++|.|+--|
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999999875 44 788888888888778888999999999998888877764 4555544433
No 169
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.20 E-value=0.96 Score=49.86 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cchHHHHHhhCChHHHH
Q 003348 599 TKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLV 673 (828)
Q Consensus 599 ~~v~e~A~~aL~nLs~~~~~k~~I~~--~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~Lv 673 (828)
...++.++..|.++.........+.+ .-.+..+.+.++.|..+-+..|+.++.-|+.. .+....+. ....|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHH
Confidence 44555555555554322222222221 13567788888888765556666665555543 12233332 25678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHchhcchh-HHHHH-HhCcHHHHHH--hc--C---------CChHHHHHHHHHHHHHhC
Q 003348 674 DLLGNGT--PRGKKDAATALFNLSIYHEN-KARIV-QAGAVKHLVD--LM--D---------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 674 ~LL~s~~--~~~~~~Al~aL~nLs~~~~n-~~~iv-~~G~V~~Ll~--LL--~---------~~~~v~~~Al~~LanLa~ 736 (828)
..+.+++ ...+..++.||.-++..... -..+. -...+..+.. .+ + ++..++..|+..|+.|.+
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 8888764 45556666677666552111 11111 0122221111 11 1 124688899999998887
Q ss_pred Cchh-H-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 737 IPDG-R-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 737 ~~e~-r-~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
.-+. . .... ...++.|+.+|.+.+..+|..|..+|.-|..
T Consensus 216 ~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 216 TLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4433 2 2222 3469999999999999999988888766643
No 170
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.18 E-value=0.039 Score=44.09 Aligned_cols=55 Identities=27% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003348 640 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
+.+|..|+.+|.+++........-....+++.|+.+|++.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578999999999876555444445568899999999999999999999999875
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.95 E-value=2.4 Score=49.18 Aligned_cols=271 Identities=12% Similarity=0.079 Sum_probs=163.1
Q ss_pred hhhHHHHHHHHhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCcHH--HHHHHHcC-CCHHHHHHHHHHHHH-hhc-
Q 003348 541 IETQVRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAIN--ILVDMLHS-SETKIQENAVTALLN-LSI- 614 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~-~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~--~Lv~lL~s-~d~~v~e~A~~aL~n-Ls~- 614 (828)
+.+.+..+++..-.+.| ..+..++..+...+.. ..-...+...++|- .....++. .+..++-.|+.+|.+ |-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 45677788888765544 3567788888877663 22234444444332 22233433 467788889999887 321
Q ss_pred -----CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 003348 615 -----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 688 (828)
Q Consensus 615 -----~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al 688 (828)
++.++..+ +...++.-+.++.+++..|.++|..+-. +...-..+.+..........+++.+.++...|+
T Consensus 210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qav 284 (858)
T COG5215 210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAV 284 (858)
T ss_pred HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 12223222 2234455556678888888888887643 222223444444455556777888888888887
Q ss_pred HHHHHchhcc-h----------------hHHHHHHhCcHHHHHHhc-C--CC-----hHHHHHHHHHHHHHhCCchhHHH
Q 003348 689 TALFNLSIYH-E----------------NKARIVQAGAVKHLVDLM-D--PA-----AGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 689 ~aL~nLs~~~-~----------------n~~~iv~~G~V~~Ll~LL-~--~~-----~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
..-..+|... + +-.+..-+.++|.|+.|| . ++ ...-..|...|...+.. ....
T Consensus 285 EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~ 362 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDK 362 (858)
T ss_pred HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhH
Confidence 7655555421 1 011122345889999998 2 11 22333444444433321 1122
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
|++. ++..+-.-+++.+...+|.|+.++..+..+..+.+..-.-..++|.+..++.+..--++..++|++..+..+
T Consensus 363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 3332 334444456788999999999999999887655555444566888898888877778899999988877654
No 172
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.92 E-value=0.98 Score=47.97 Aligned_cols=191 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcC-------C--CH---HHHHHHHHHHHHhhcCCccHHHH
Q 003348 556 SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHS-------S--ET---KIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s-------~--d~---~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
+++.+..|+.+|..--...++---.+-. .|.+..|++=+-+ + .+ .-..+|++.|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677778877776543333332223333 3888887763321 1 12 23345666666678899999999
Q ss_pred HHcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHch
Q 003348 623 ANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~-----~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs 695 (828)
.++...--|..+|+..+ +..|..+++++..|...++. -..+...+++|..++.+..|+.-.|..|.-.+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99986666666665543 55889999999999874443 344456799999999999999999999999999988
Q ss_pred hcchhHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh
Q 003348 696 IYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ 746 (828)
Q Consensus 696 ~~~~n~~~iv~--------~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~ 746 (828)
.++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77665444332 22333344433 67888999999999999999999998864
No 173
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.3 Score=58.27 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+....+.+++.....+.+.++-.---+.+.++..+.- ..+++..++.=..++++.++--|++.+.-+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 3456788899999888877777777777777766532 2256777777667789999988888876553221
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003348 621 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
+ -.-...+|.+.++.+++.++..++..+.++ ++.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+
T Consensus 118 -i-~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 -I-TEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred -H-HHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 1 113577899999999999999888877766 344555666679999999999999999999999999998774432
Q ss_pred -HHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCch--hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 701 -KARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 701 -~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e--~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
..-.+....+..+++.+.. ..-..-+.+|..++..-. .+++. ..+..+...+.+.+..+.-.++.+++++..
T Consensus 194 ~~~~~l~~~~~~~lL~al~e--c~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNE--CTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCcccccHHHHHHHHHHHHH--hhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 1111222233344444411 111223445555554211 12211 234566666777777778888888888776
Q ss_pred CCHHhHHHHHhCCCHHHHHHhhcCCC
Q 003348 778 NSSRFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 778 ~~~~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
.-.. ....+-...-++|+.++....
T Consensus 269 ~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 269 YLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHH-HHHHHHHHhcccceeeecccc
Confidence 5544 222223345666666666654
No 174
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.019 Score=60.60 Aligned_cols=47 Identities=15% Similarity=0.411 Sum_probs=37.8
Q ss_pred ccccCccccc--cCCe-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 240 FCCPLSLELM--TDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~lm--~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.-|-||.+=| -|-+ ++||.|.|-+.||.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4699998654 2444 489999999999999999655679999987754
No 175
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.79 E-value=0.94 Score=55.16 Aligned_cols=263 Identities=16% Similarity=0.153 Sum_probs=140.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHH
Q 003348 547 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIAN 624 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~ 624 (828)
.|++.+.+.+.+.+.-|+.-|. .|-+. .-+-..=.+...+..|+++|.+.+.+||..|+.+|+-|+.- ++.+ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--le- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--LE- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--HH-
Confidence 7889999888888887776664 33332 11111112346888999999999999999999999988621 1111 10
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHH-HhccCcc-----hHHHHHhhCChHHHHHhhcC-C-CHHHHHHHHHHHHHchh
Q 003348 625 ANAIEPLIHVLQTGSPEARENAAATLF-SLSVIED-----NKIKIGRSGAIGPLVDLLGN-G-TPRGKKDAATALFNLSI 696 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~-nLS~~~e-----~k~~I~~~g~I~~Lv~LL~s-~-~~~~~~~Al~aL~nLs~ 696 (828)
-.++.|+.-+-+|....+..+.-.|. .++..+. ....+ -....+.|...+.- + ...++..++..+.-+-.
T Consensus 85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV-~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATV-CKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHH-HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 12333333333444444443333332 2222221 11111 11223344443322 2 23355566655554322
Q ss_pred c-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 003348 697 Y-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 773 (828)
Q Consensus 697 ~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~ 773 (828)
. .+--.. ...+....++.-| .+...++.+|+.+|+.|+..-.+ .... +.+..|++=|. ..+.....--+-+|.
T Consensus 163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLYV--ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHHH--HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 1 110000 2234444444444 45567889999999999874221 1111 12333333332 234455555566677
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhh---cCCCHHHHHHHHHHHHHhhcc
Q 003348 774 QLCTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL---~~g~~r~r~kA~~lL~~L~~~ 820 (828)
.+|+..+. +-----..+++.+.... +.++++.|++....|..|-.+
T Consensus 239 ~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 239 AICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 77775441 11111145788888888 667889999999998877553
No 176
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=3.3 Score=49.96 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=152.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC---------------CCHHHHHHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS---------------SETKIQENA 605 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s---------------~d~~v~e~A 605 (828)
.+.+++...+.|.+.+..+...++..+..+++.+++.-..+.+ .++-|+..|+. .||-+|...
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 3567777788888888888888889999999988777666665 66777776631 378899999
Q ss_pred HHHHHHhhcCCcc-HHHHHHc--------------C------CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH-HHH
Q 003348 606 VTALLNLSINDNN-KSAIANA--------------N------AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKI 663 (828)
Q Consensus 606 ~~aL~nLs~~~~~-k~~I~~~--------------g------~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k-~~I 663 (828)
+..|.-|-.++.. ...+.+- | ++..+..+. .+...+..|+.+|...-.+.++- ..+
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeee
Confidence 9988888655332 2222110 0 111111111 23345555666665443322221 111
Q ss_pred H--------h--hCC----hHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHH
Q 003348 664 G--------R--SGA----IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAV 728 (828)
Q Consensus 664 ~--------~--~g~----I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al 728 (828)
+ . ..+ =..+++.|++.+..+++.|+..++.|.- ..|... .+..|+.+| ..+++....+.
T Consensus 333 aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~-----mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRV-----MVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHH-----HHHHHHHHHHhccHHHHHHHH
Confidence 0 0 011 1246667777788888888888777633 333332 334566666 45666666666
Q ss_pred HHHHHHhC--CchhHHHH-------------HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC--------------
Q 003348 729 AVLANLAT--IPDGRVAI-------------GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS-------------- 779 (828)
Q Consensus 729 ~~LanLa~--~~e~r~~i-------------~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~-------------- 779 (828)
.-+..++. .|+.+-.| ++..++..++.++.++.+...+.++.-|+.-...+
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa 486 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVA 486 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 66666655 33333211 12345777888887664544444444443322211
Q ss_pred ----HHhHHHHH------------hCCCHHHHHHhhcCCC--HHHHHHHHHHHHHhhcc
Q 003348 780 ----SRFCSMVL------------QEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 780 ----~~~~~~v~------------~~g~v~~L~~LL~~g~--~r~r~kA~~lL~~L~~~ 820 (828)
+++-+.++ +..++..|..++.+.+ ..++..|..+|--|..+
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR 545 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 01111222 2346778888887763 56777777766655543
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.77 E-value=1.7 Score=53.50 Aligned_cols=239 Identities=18% Similarity=0.180 Sum_probs=144.0
Q ss_pred HHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc----CCC----HHHHHHHH
Q 003348 581 IANCGAINILVDMLHSS-----ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA 647 (828)
Q Consensus 581 i~~~GaI~~Lv~lL~s~-----d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~----s~~----~e~~~~Aa 647 (828)
+.+.|++..|+.++.+- +..+....+..|...+.-+.||..+++.|+++.|++.|. .+. .++.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45679999999999762 344555666666666666889999999999999998874 333 55666666
Q ss_pred HHHHHhccCcc---hHHHHH--hh--------CChHHHHHhhcCC----CHHHHHHHHHHHHHchhcchhHHHHHHhCcH
Q 003348 648 ATLFSLSVIED---NKIKIG--RS--------GAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAV 710 (828)
Q Consensus 648 ~aL~nLS~~~e---~k~~I~--~~--------g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V 710 (828)
.++..|..... ...... .. .-+..|++.+.+. ++.+....+++|-+|+...+.+...+-.-.-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 55555433111 111100 11 2256666666553 5788888999999998866655433322222
Q ss_pred HHHHHh--cCC----Ch-HHHHHHHHHHHHHhCCchh---HHHHHhCCcHHHHHHHHccC--------CHHHH-------
Q 003348 711 KHLVDL--MDP----AA-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SARGK------- 765 (828)
Q Consensus 711 ~~Ll~L--L~~----~~-~v~~~Al~~LanLa~~~e~---r~~i~~~g~I~~Lv~lL~s~--------s~~~k------- 765 (828)
+. +++ ++. +. -..+..+.+..+|-.+..| |..|++.|++...+++|... +++-+
T Consensus 273 p~-l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PY-LDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred Hh-cChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 21 122 111 11 1223333444444334333 68889999999999888542 33333
Q ss_pred -HHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhccc
Q 003348 766 -ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 766 -e~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~~ 821 (828)
..+...|.-||.+... .+..+..++++.|-.|=+.. +..+-..|..+|..|+...
T Consensus 352 Lp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 3577788888887653 34446667776666655444 3456667777777776643
No 178
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.70 E-value=0.079 Score=42.27 Aligned_cols=54 Identities=26% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003348 681 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 681 ~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
+.++..|+++|.+++........-....+++.|+.+| +++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999988777666667889999999999 67778999999999875
No 179
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.7 Score=49.55 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=129.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 620 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~ 620 (828)
.+..+.+.++++..++.++++|+-+...+-+..++--.. +++....+|...+..|.-.++..+..++.. ++.-.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 456788888899999999999998888877766544332 233444444444444444444444443321 21111
Q ss_pred HHHHcCCHHHH---------------------------------HHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh-
Q 003348 621 AIANANAIEPL---------------------------------IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 666 (828)
Q Consensus 621 ~I~~~g~l~~L---------------------------------v~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~- 666 (828)
.+-+ .++.+ +++|.+++...-+....+|..++...+.-..++..
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI 293 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI 293 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH
Confidence 1111 22333 33444555555455555555544433322222221
Q ss_pred --CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC-----------cH----HHHHHhc-CCChHHHHHHH
Q 003348 667 --GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG-----------AV----KHLVDLM-DPAAGMVDKAV 728 (828)
Q Consensus 667 --g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G-----------~V----~~Ll~LL-~~~~~v~~~Al 728 (828)
.++..+..+ ..+...+..|+.+|.....+.++-.+-+... +| ..+++.| +++..+..+|+
T Consensus 294 LYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrral 371 (866)
T KOG1062|consen 294 LYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRAL 371 (866)
T ss_pred HHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 122222222 1245566677777776655554332222111 11 1234444 56677777777
Q ss_pred HHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-HH------hHHHHH-------hCCCHHH
Q 003348 729 AVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS-SR------FCSMVL-------QEGAVPP 794 (828)
Q Consensus 729 ~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~-~~------~~~~v~-------~~g~v~~ 794 (828)
.++..|......+. .+..|+++|.+.++..+...+.-+..++... +. ..-.|+ ...++..
T Consensus 372 ELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~n 445 (866)
T KOG1062|consen 372 ELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNN 445 (866)
T ss_pred HHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHH
Confidence 77766654322221 2566778888788888888888888777642 21 111222 2235667
Q ss_pred HHHhhcCC
Q 003348 795 LVALSQSG 802 (828)
Q Consensus 795 L~~LL~~g 802 (828)
|+.++.++
T Consensus 446 ll~LIa~~ 453 (866)
T KOG1062|consen 446 LLRLIANA 453 (866)
T ss_pred HHHHHhcC
Confidence 77777766
No 180
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=2.4 Score=50.36 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d--~~v~e~A~~aL~nLs~~~~~ 618 (828)
++..+..+-..|.+.++..+..|+.++.++... +++..+. .-|+ ++|-+.+ .-++..|+-+|+.|-.. +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--s 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--S 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--C
Confidence 355667777788888988889999999988653 3444332 2333 5555543 44667777777776432 1
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 003348 619 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 655 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~ 655 (828)
-..+--.+....++++|...+..+.-.+...+..|+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 1122223566778888877766555555555555544
No 181
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=1.6 Score=51.86 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=144.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCH
Q 003348 550 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAI 628 (828)
Q Consensus 550 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l 628 (828)
+.+++.+...---|+..|..+...+ -.| +.-+-++.+|++.-+-++..|+.+|..+.. +++. -..++
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~F 183 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCF 183 (877)
T ss_pred HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhH
Confidence 3344666555555666666655532 233 334578899999999999999999988753 2321 12578
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHH
Q 003348 629 EPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQ 706 (828)
Q Consensus 629 ~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~ 706 (828)
|.|..-|..+++.++..|+.+++.|+. ++.+-- ..-|.+.++|-+. +-=....-+....+|+....- +.
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----Lg 254 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LG 254 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hh
Confidence 999999999999999999999999986 443322 3345666666543 222333344456666654332 33
Q ss_pred hCcHHHHHHhcCCC--hHHHHHHHHHHH--HHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003348 707 AGAVKHLVDLMDPA--AGMVDKAVAVLA--NLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 707 ~G~V~~Ll~LL~~~--~~v~~~Al~~La--nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
..++++|.+++++. ..+.-+|+.++- ++.. .++.-+.+. -.++.|-.++.+.++..+.-++-++.-+....+.
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 44667777777322 233333333221 2222 222222221 1356666677777888888888888877776664
Q ss_pred hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 782 FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 782 ~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.++.- -+.++..|.+.++.+|-+|..+|.-+
T Consensus 333 ~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 333 AVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 33322 23455566666666777776666544
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.10 E-value=1.3 Score=49.36 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=145.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH-----HHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~-----~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~ 614 (828)
.+.+..|+..|..-+.+.+..++.....+.+.....+. .+... ..+..|+.-- +++++--.+...|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 46788899999988999999999999888877655543 22221 2333333322 466677788888888888
Q ss_pred CCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHh-h--CChHHHHHhhcCCCHHHHHHHHHH
Q 003348 615 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR-S--GAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 615 ~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~-~--g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
++.-...+.....+..+......++-++...|..++..|-. +......... . .++.....||.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 87777778888889999999999999999999999988543 4333222222 2 677888999999999999999999
Q ss_pred HHHchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003348 691 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
|..|-.+..|...|.. ..-+..++.+| +....++-+|..++.....+|..-..|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 9999999988876654 55777788888 677889999999999888876544333
No 183
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.036 Score=57.27 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=42.8
Q ss_pred CcccccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003348 238 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
..|+|||++-.|.+-. +-+|||.|.-.++++.- ..+||+|++.+..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 5799999999999875 46899999999988874 356999999999887553
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.98 E-value=0.16 Score=47.55 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003348 542 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL 612 (828)
-..+..|++.|. +.++....-|+.-|..+++.-|..|..+.+.|+-..+..++.++|++|+.+|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 357899999994 55677777899999999999999999998899999999999999999999999998765
No 185
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.98 E-value=2.2 Score=47.07 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHHchhc---chhHHHHHHhCcHHH
Q 003348 638 GSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGAVKH 712 (828)
Q Consensus 638 ~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~---~~n~~~iv~~G~V~~ 712 (828)
.....|+.++..|..+-........+.. ...+..+...++.+..+-+..|+.++.-|+.. .+.... +-..+.|.
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~~~~~~ 133 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFEELKPV 133 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHHHHHHH
Confidence 3455666666666555432222222222 14577788888888766667777777666654 223333 33457778
Q ss_pred HHHhc-CCC--hHHHHHHHHHHHHHhC---C-chhHHHHHhCCcHHH--HHHHHcc-C---------CHHHHHHHHHHHH
Q 003348 713 LVDLM-DPA--AGMVDKAVAVLANLAT---I-PDGRVAIGQENGIPV--LVEVVEL-G---------SARGKENAAAALL 773 (828)
Q Consensus 713 Ll~LL-~~~--~~v~~~Al~~LanLa~---~-~e~r~~i~~~g~I~~--Lv~lL~s-~---------s~~~ke~Av~~L~ 773 (828)
|..++ +.. ...+..++.+|+.++. . .+.....++ .+.. ....++. + ++.+.-.|+.+-.
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 88877 322 3344455555555544 2 122221111 2221 1112222 1 2334444444433
Q ss_pred HHhhCCHH-hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 774 QLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 774 ~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
-|...-+. .....+ ...++.|..+|.+.+..+|-.|.+.|.+|-..
T Consensus 212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33333222 222222 34689999999999999999999998887543
No 186
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.97 E-value=3 Score=43.77 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHH
Q 003348 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLI 632 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----~d~~v~e~A~~aL~nLs~~~~--~k~~I~~~g~l~~Lv 632 (828)
...|+..+.-++.+ ++.|..+.++..--.|-.+|.. ..+.++-.++.+++.|..+++ .-..+...+.||..+
T Consensus 96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 35677777777775 5788888888766666677753 356788899999999876543 344456789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--------hCChHHH-HHhhcCCCHHHHHHHHHHHHHchhcchhHHH
Q 003348 633 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 633 ~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--------~g~I~~L-v~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
+.+..|+...+.-|+.++--+-.+|..-..|.. ...+..+ ..+.+.++.+..+.++++..+|+.++..+..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999988877776654322221 1223333 4445567899999999999999999887765
Q ss_pred H
Q 003348 704 I 704 (828)
Q Consensus 704 i 704 (828)
+
T Consensus 255 L 255 (293)
T KOG3036|consen 255 L 255 (293)
T ss_pred H
Confidence 4
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.76 E-value=4.8 Score=42.86 Aligned_cols=220 Identities=16% Similarity=0.099 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHH-Hc-CCHHHHHH-------hhcCCC--H---HHHHHHHHHHHHhccCcchHHHH
Q 003348 598 ETKIQENAVTALLNLSINDNNKSAIA-NA-NAIEPLIH-------VLQTGS--P---EARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~-~~-g~l~~Lv~-------lL~s~~--~---e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
+++.+++|+.-|..--..-.+-..+. .. |.+..|++ .|..+. . .-..+|++.|-.++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 67777777766654422222333333 33 66666543 233332 1 33557788888889999999999
Q ss_pred HhhCChHHHHHhhcCCC-----HHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHHHh
Q 003348 664 GRSGAIGPLVDLLGNGT-----PRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLA 735 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~-----~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa 735 (828)
.+....-.|..+|...+ +..+-.+++.++.|.. +.+....+...+++|..++.++ .++-....|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887767777776542 5678889999999987 4456667788999999999984 33444556778888888
Q ss_pred CCchhHHHHHhCC--------cHHHHH-HHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh---CCCHHHHHHhhcCCC
Q 003348 736 TIPDGRVAIGQEN--------GIPVLV-EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ---EGAVPPLVALSQSGT 803 (828)
Q Consensus 736 ~~~e~r~~i~~~g--------~I~~Lv-~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~---~g~v~~L~~LL~~g~ 803 (828)
.++.|-..+.+.. ++..++ .+.+..+++.-.+.+.+-..|+.+.. .+..+.+ ...-.....-+-.++
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~~~LP~~Lrd~~f~~~l~~D 246 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALRQCLPDQLRDGTFSNILKDD 246 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHHHHS-GGGTSSTTTTGGCS-
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHHHhCcHHHhcHHHHHHHhcC
Confidence 8888877665421 222222 23456899999999999999998753 4555432 111111111222346
Q ss_pred HHHHHHHHHHHHHhh
Q 003348 804 PRAKEKAQALLSYFR 818 (828)
Q Consensus 804 ~r~r~kA~~lL~~L~ 818 (828)
+.+++.-..++.++.
T Consensus 247 ~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 247 PSTKRWLQQLLSNLN 261 (262)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 778877777777664
No 188
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.72 E-value=7.4 Score=44.17 Aligned_cols=96 Identities=13% Similarity=0.244 Sum_probs=74.2
Q ss_pred HHH-cCCHHHHHHhhcCCC---HHHHHHHHHHHHHhccCcch-HHHHHhhCChHHHHHhhc-CC---CHHHHHHHHHHHH
Q 003348 622 IAN-ANAIEPLIHVLQTGS---PEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLG-NG---TPRGKKDAATALF 692 (828)
Q Consensus 622 I~~-~g~l~~Lv~lL~s~~---~e~~~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~-s~---~~~~~~~Al~aL~ 692 (828)
+++ ...+..|..++++.. ..+...|+.++..+..++.. -..|.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 444556777777653 56777888888887765554 455556699999999988 54 5677777777999
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhc
Q 003348 693 NLSIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
.||.+.....++.+.+.++.+++++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHh
Confidence 9999999999999999999999987
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.72 E-value=0.022 Score=63.32 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=36.2
Q ss_pred cccCccccccCCe----ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 241 CCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 241 ~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
.||+|++=|.+-| ++.|.|+|--+|+.+|+. .+||+||--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 7999999999988 368999999999999976 46999986544
No 190
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.69 E-value=0.37 Score=43.66 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=55.8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh--CCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 748 g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~--~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
..++.++..+.+.+.++|..|+.+|++++.... ..++. ..++..|.+++.+.++++|..|.-+-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 468888888999999999999999999997644 23332 468899999999999999988877777765
No 191
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.043 Score=60.53 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=37.9
Q ss_pred ccccCccccccC---CeecCCCcchhHHHHHHHHhcCC--CCCCCCCC
Q 003348 240 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ 282 (828)
Q Consensus 240 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~ 282 (828)
|.|||..+-=.| |+.+.|||..+|.+|.+-..+|. ..||.|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 689999988776 88999999999999999999886 56999943
No 192
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.56 E-value=0.033 Score=60.76 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=41.1
Q ss_pred cccCccccccCCeecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 003348 241 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 287 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 287 (828)
.|-||-+==+|=-|-||||-.|-.|+..|..+. +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999988888788999999999999999653 68899999887654
No 193
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=2.8 Score=52.48 Aligned_cols=219 Identities=18% Similarity=0.226 Sum_probs=132.5
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCH
Q 003348 553 KSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAI 628 (828)
Q Consensus 553 ~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~-~~k~~I~~~g~l 628 (828)
++.+..+|.++-+.|..++.. +.......+. .....|..-+++...-++..++.+|..|-.. + ++...+. ..|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHH
Confidence 355788999999999988875 3333332221 3344455555556666777777777666322 2 2222222 235
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc----CcchHHHHHhhCChHHHHHhhcCC--CHHHHHHH--HHHHHHchhcchh
Q 003348 629 EPLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHEN 700 (828)
Q Consensus 629 ~~Lv~lL~s~~~e~~~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~A--l~aL~nLs~~~~n 700 (828)
+-++-.++.-+...+.+|..+|..+.. .++.... ....|...+..+..+ .......| +.++..+.. .
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 555555577789999999999998872 1111111 122556666666554 23333333 333333332 2
Q ss_pred HHHHHHhCcHHHHHHh----c-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003348 701 KARIVQAGAVKHLVDL----M-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 774 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~L----L-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~ 774 (828)
...+++.+.++.+++. | +....++..|++.+..++. .++-.-.-.....++.+..++.......+...-..|-.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2234555566666654 3 5778899999999999887 55555544445578888888888788888777777777
Q ss_pred HhhCC
Q 003348 775 LCTNS 779 (828)
Q Consensus 775 L~~~~ 779 (828)
|++..
T Consensus 896 Lirkf 900 (1176)
T KOG1248|consen 896 LIRKF 900 (1176)
T ss_pred HHHHh
Confidence 77653
No 194
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.045 Score=60.23 Aligned_cols=62 Identities=19% Similarity=0.469 Sum_probs=49.6
Q ss_pred cccccCccccccCCe-----ecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCcHHHHHHHH
Q 003348 239 DFCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
...||||++-..=|+ ++.|||-|--.||++|+-+. ...||.|.-.-...++.|-+.+|...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 357999999888886 47899999999999999532 234999988777788988888775543
No 195
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.06 E-value=0.089 Score=41.58 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=25.7
Q ss_pred cccccCccccccCCee-cCCCcc--hhHHHHHHHHh-cCCCCCCCCCCc
Q 003348 239 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWID-LGLFVCPKTRQT 283 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~-~~~~~cP~t~~~ 283 (828)
.+.|||+...|+-||- ..|.|. ||-....+... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999997 568775 88755555444 344569999875
No 196
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.81 E-value=22 Score=41.71 Aligned_cols=274 Identities=13% Similarity=0.065 Sum_probs=155.9
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHH-hhccChhhHHHHHhc--C-------cHH-HHHHHHcCCCHHHHHHHHHH
Q 003348 542 ETQVRKLVEDLKST--SLDTQREATAELRL-LAKHNMDNRMVIANC--G-------AIN-ILVDMLHSSETKIQENAVTA 608 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~-La~~s~~nr~~i~~~--G-------aI~-~Lv~lL~s~d~~v~e~A~~a 608 (828)
..++..|++.|-.. +++.+..|.-.|.+ |...+++-+....+. | -|+ ..++.|.+..+..-..|..+
T Consensus 38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql 117 (858)
T COG5215 38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL 117 (858)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 44555666666533 44555555555543 333233222222211 1 111 23445666777777777777
Q ss_pred HHHhhcCCccHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhC-ChHHHH-HhhcCC-CHHHH
Q 003348 609 LLNLSINDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSG-AIGPLV-DLLGNG-TPRGK 684 (828)
Q Consensus 609 L~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g-~I~~Lv-~LL~s~-~~~~~ 684 (828)
+..++..+-.-. ...|.+..++.....+ ....+..++.++.+.+........+.... ++-.++ --++++ +..++
T Consensus 118 ~aaIA~~Elp~~--~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avR 195 (858)
T COG5215 118 LAAIARMELPNS--LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVR 195 (858)
T ss_pred HHHHHHhhCccc--cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHH
Confidence 766653211000 0112333333333333 35578899999999988766655555553 233333 334555 56788
Q ss_pred HHHHHHHHH-chhcchhHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHH
Q 003348 685 KDAATALFN-LSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV 757 (828)
Q Consensus 685 ~~Al~aL~n-Ls~~~~n~~~iv~~G~V~~Ll~LL-----~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL 757 (828)
..|+.||++ |-.. +..+-.++-...++... .++.++...|.+.|..+.. +-.--+..++..........+
T Consensus 196 LaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m 272 (858)
T COG5215 196 LAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM 272 (858)
T ss_pred HHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999998 4332 23344444444455443 4677888899988887765 223333455544556667788
Q ss_pred ccCCHHHHHHHHHHHHHHhhCCHHhHHHHH----------------hCCCHHHHHHhhcCCC------H-HHHHHHHHHH
Q 003348 758 ELGSARGKENAAAALLQLCTNSSRFCSMVL----------------QEGAVPPLVALSQSGT------P-RAKEKAQALL 814 (828)
Q Consensus 758 ~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~----------------~~g~v~~L~~LL~~g~------~-r~r~kA~~lL 814 (828)
++.++++.-.|+..-..+|...-+.--... -..++|.|+.||...+ . .....|..+|
T Consensus 273 ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCL 352 (858)
T COG5215 273 KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCL 352 (858)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHH
Confidence 999999999999987788875321111111 1236888999998732 1 3556677788
Q ss_pred HHhhcc
Q 003348 815 SYFRNQ 820 (828)
Q Consensus 815 ~~L~~~ 820 (828)
.++...
T Consensus 353 qlfaq~ 358 (858)
T COG5215 353 QLFAQL 358 (858)
T ss_pred HHHHHH
Confidence 877653
No 197
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.15 Score=55.00 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=41.2
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
+|=.||||..=--..|..||||.-|..||.+|+.+. ..|-+|+.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 678999999888888899999999999999999865 569999765543
No 198
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.039 Score=43.50 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred cccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 241 CCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
.|-||.+-..|-|+--|||. .|-.|=.+-|..++..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998889889999986 788887777777778999999765
No 199
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.74 E-value=8.9 Score=42.77 Aligned_cols=202 Identities=13% Similarity=0.082 Sum_probs=139.7
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHH-HHHhh--CChHHHHHhhcCC--CHHHHHHHHHHHHH
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKI-KIGRS--GAIGPLVDLLGNG--TPRGKKDAATALFN 693 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~-~I~~~--g~I~~Lv~LL~s~--~~~~~~~Al~aL~n 693 (828)
..+...+.+..|+..|..-+-+++..++.+..++-... +.+. ..++. .-.+.++..|-.+ ++++--.+-..|..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 44556789999999999999999999988888876532 2222 11111 2213333333222 56666677777777
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh-CCchhHHHHHhCC---cHHHHHHHHccCCHHHHHHH
Q 003348 694 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA-TIPDGRVAIGQEN---GIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa-~~~e~r~~i~~~g---~I~~Lv~lL~s~s~~~ke~A 768 (828)
...++.....++....+..+.+.+ .++-++...|..++.-|- .|..-...+...+ .+..+..+|.+++.-+|.++
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 777887788888888888888887 567788999999998754 4776667766644 47788889999999999999
Q ss_pred HHHHHHHhhCCHHhHH--HHH-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 769 AAALLQLCTNSSRFCS--MVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 769 v~~L~~L~~~~~~~~~--~v~-~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+..|..|-.+...... ..+ ...-+..++.++.+....++-.|-.+.+.+...+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999876542221 222 2345677788888888889999999998887654
No 200
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=3.9 Score=48.95 Aligned_cols=132 Identities=18% Similarity=0.254 Sum_probs=76.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-----------CCHHHHHHHHHHHHHchhcch
Q 003348 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSIYHE 699 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-----------~~~~~~~~Al~aL~nLs~~~~ 699 (828)
++++|.+++.+++..+....+-|+ ...-+..++.+|+. .+.+-+..-+.+|...+..-.
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLv----------ssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLV----------SSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhh----------hhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 445556666666666666655554 33445666666642 123445666667776665322
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHh
Q 003348 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLC 776 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~ 776 (828)
. +.+.+|+.|++.+ +.+.......+..+...-. .+.-|..| +..|++-+.. .+.++-+.|+|++...|
T Consensus 392 ~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 392 E----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred H----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 2 5678899999999 4444333333433333222 33333333 3444444432 57788899999999999
Q ss_pred hCCHH
Q 003348 777 TNSSR 781 (828)
Q Consensus 777 ~~~~~ 781 (828)
....+
T Consensus 463 e~~~~ 467 (948)
T KOG1058|consen 463 EGLSE 467 (948)
T ss_pred hhhHH
Confidence 87664
No 201
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.56 E-value=3.3 Score=46.66 Aligned_cols=239 Identities=18% Similarity=0.206 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHH-HHHHHHhhcCCc
Q 003348 541 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENA-VTALLNLSINDN 617 (828)
Q Consensus 541 ~~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A-~~aL~nLs~~~~ 617 (828)
..+.|..+++.|. +....+|+.++-.|..-+. ++..|..+...|.+..++..+.. .+..+.-.+ +.++.-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 4567899999998 3355677788888887777 67899999999999999999954 333244333 444444555555
Q ss_pred cHHHHHHcCCHHHHHHhhcC--C---CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc---------CCCHHH
Q 003348 618 NKSAIANANAIEPLIHVLQT--G---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRG 683 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~lL~s--~---~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---------s~~~~~ 683 (828)
+...+.+.+.+..++.+|+- . .......-. .+++ .+ ....+..+..++. ......
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhh-------HH-HHHHHHHHHHHHhccccccccCCccccc
Confidence 55555566677777888871 1 000000000 0000 00 0111121222221 112234
Q ss_pred HHHHHHHHHHchh---------------cchhHHHHHHhCcHHHHHHhcC----CC-------------hHHHHHHHHHH
Q 003348 684 KKDAATALFNLSI---------------YHENKARIVQAGAVKHLVDLMD----PA-------------AGMVDKAVAVL 731 (828)
Q Consensus 684 ~~~Al~aL~nLs~---------------~~~n~~~iv~~G~V~~Ll~LL~----~~-------------~~v~~~Al~~L 731 (828)
+..|+.+|-.++. ..-.|..+...|++..+++++. .. ....+.++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 4455555555531 1223566777888888888751 10 12456799999
Q ss_pred HHHhC-CchhHHHHHhC--CcHH-HHHHHHcc---CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCC
Q 003348 732 ANLAT-IPDGRVAIGQE--NGIP-VLVEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 791 (828)
Q Consensus 732 anLa~-~~e~r~~i~~~--g~I~-~Lv~lL~s---~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~ 791 (828)
.+.+. +.+++..+... +.++ .+..++.. ........++.++.|+..+++..|..+...+.
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 99887 55556555442 2333 33333332 23344678999999999999877777665433
No 202
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.39 E-value=0.53 Score=40.32 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003348 684 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
.|.|++|+.|++..+.....+-+.++++.++++. .+-..++--|..+|..++...+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888877777889999999998 3456778889999999999999999887765
No 203
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.31 E-value=1.9 Score=51.98 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=133.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHH-HHHHHHHHHhhcC-CccH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ-ENAVTALLNLSIN-DNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~-e~A~~aL~nLs~~-~~~k 619 (828)
+....|+++....+++.+..+...|. .+...+ +| ....++++.+.++.+...+. ..++.+|.||+.. +..|
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 44555666655555555555555554 222211 11 12466677776655432222 5688999999654 5567
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-hHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e-~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
..|...-+++.+-..+...++..+..++..+.||...+. +...+++. ...+....++.........+++.++..++..
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 778888778877777878888999999999999988665 46667774 6677777777777788888888888877665
Q ss_pred chh-HHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHH
Q 003348 698 HEN-KARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEV 756 (828)
Q Consensus 698 ~~n-~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~l 756 (828)
.+| +..+.+ ......++.++ +.+..+....+.+..|+.. ..+....+.....++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 443 343333 45556666666 6777888888777777443 22333444554555544443
No 204
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.22 E-value=1.6 Score=46.62 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc
Q 003348 723 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 800 (828)
Q Consensus 723 v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~ 800 (828)
....|+.+|.-+|- |+..|..+.+...+..|+.+|. ...+.++-.+..+|..+...++.+...+-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567888888777 9999999999999999999995 467999999999999999999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHh
Q 003348 801 SG--TPRAKEKAQALLSYF 817 (828)
Q Consensus 801 ~g--~~r~r~kA~~lL~~L 817 (828)
+. +..+|-|..+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 87 467888888866644
No 205
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.94 E-value=2.1 Score=49.53 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCH----HHHHHHHHHHHHchhcchhHHH
Q 003348 628 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 628 l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~----~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
...+.+++.+|+...+..|...|.+|+.+......+....++..|..++.++.. .....++.++..|....-.-+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455678888999888888999999999988888888888889999999998753 5566666666666554444444
Q ss_pred HHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCch-hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 704 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 704 iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
.+...+|.....+. ..+..+...|+.+|.++..+.. -+..+.++-.+..|+..+...+..++..|.+.|-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 45555555555554 2334566789999999998666 4566677777999999999999999999888888776653
No 206
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.94 E-value=8.6 Score=38.66 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC-HHHHHHh
Q 003348 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA-IEPLIHV 634 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~-l~~Lv~l 634 (828)
++.++..++..+..|+..-+. +++ ..+|.+...|.++++.++..|+.+|..|...+--| -.|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 467888999999999885432 222 46889999999999999999999999986543222 1133 3778888
Q ss_pred hcCCCHHHHHHHHHHHHHhccC
Q 003348 635 LQTGSPEARENAAATLFSLSVI 656 (828)
Q Consensus 635 L~s~~~e~~~~Aa~aL~nLS~~ 656 (828)
|...+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9899999999999999988654
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.93 E-value=6.5 Score=49.51 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=140.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc---C-Ccc
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI---N-DNN 618 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~---~-~~~ 618 (828)
.+..-++.++. .+.+..|+..|+.|+... .+++. .-++|.++.++.+..++|+..|+.+|..+-. + +..
T Consensus 426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKT--IQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhc--chhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34445555554 356788999999998742 22322 2579999999999999999999999887632 1 111
Q ss_pred HHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhccC------------------c-chH--------HHHHhh-CCh
Q 003348 619 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI------------------E-DNK--------IKIGRS-GAI 669 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~-~e~~~~Aa~aL~nLS~~------------------~-e~k--------~~I~~~-g~I 669 (828)
-..|.-.=.+|.|-+++.+.+ ..++..-|..|.-|+.. + ++. ...... ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 122222235666777776633 33444444444433321 0 000 000000 112
Q ss_pred H-HHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhC
Q 003348 670 G-PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQE 747 (828)
Q Consensus 670 ~-~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~ 747 (828)
. ..+.||.+..+-+++.-+..|.-||..-.-.. ...=+++.|+.+| +.+..++-.-...+.-+|..-..| -+++
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~se 655 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSE 655 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHH
Confidence 2 22333334444455444445555544211000 1112445555555 333333322222222222211111 1234
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 748 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 748 g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
..+|.|.+-|..+.+.+...|..+|..||..+--....+. .+++-..-++.+.+.-+|+.+..++....++
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 4578888888888999999999999999886531111221 2344455566778888999988877665544
No 208
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.64 E-value=2.7 Score=49.19 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc---cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSINDN---NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~---~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
.|...+.+|.+..+.++++|+.....|+.--. .-..+...|. .|.+-|....+++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 34556677888899999999988887753211 1122222222 244566666788877777777776553332211
Q ss_pred -HHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC---
Q 003348 663 -IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--- 736 (828)
Q Consensus 663 -I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~--- 736 (828)
---.|.+|.|...|++....+..+.+..+..+|.+.....-..+ -.+.--|+++| +-+.+++..|...+..++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 11248899999999999999999999988888875432111111 11122244444 3455666655554444432
Q ss_pred -------------CchhH---------HHHHhCC----cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCC
Q 003348 737 -------------IPDGR---------VAIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG 790 (828)
Q Consensus 737 -------------~~e~r---------~~i~~~g----~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g 790 (828)
..+-+ ..+.+.. ++|.|+.=-+..+..+|.....++..+...-++.....+ .-
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv-y~ 841 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV-YS 841 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 11111 1112222 233333333445566666555555554443222111111 22
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 003348 791 AVPPLVALSQSGTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 791 ~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~~ 821 (828)
+.|.|-.-+.+.++.-|.-|..++++|.-..
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 4555666677777888888888888876543
No 209
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.51 E-value=2.1 Score=43.11 Aligned_cols=76 Identities=13% Similarity=0.267 Sum_probs=62.8
Q ss_pred HHHHHHhCcHHHHHHhcC----------CChHHHHHHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHccCCHHHHHHHH
Q 003348 701 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA 769 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL~----------~~~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av 769 (828)
...+++.|++..|+++|. .+......++.+|..|..+..|...+.. .+++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 457889999999999871 2235677899999999999999999887 56799999999999999999999
Q ss_pred HHHHHHh
Q 003348 770 AALLQLC 776 (828)
Q Consensus 770 ~~L~~L~ 776 (828)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.29 E-value=7 Score=49.26 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=138.0
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhh---ccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhh
Q 003348 538 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLA---KHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLS 613 (828)
Q Consensus 538 l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La---~~s~~nr~~i~~~GaI~~Lv~lL~s~d~-~v~e~A~~aL~nLs 613 (828)
.......+|.++.++..+...+|..|+..|..+. +.-+..-..|...=.+|.|-.++.+.++ .++..-+..|..|+
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 3456778999999999999999999888776543 2212222223333456677777766332 23322222233332
Q ss_pred c------------------C-CccHHHHH-----Hc----CCHHH-HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003348 614 I------------------N-DNNKSAIA-----NA----NAIEP-LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 614 ~------------------~-~~~k~~I~-----~~----g~l~~-Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
. + +++..... +. ..+.. ...+|....+.++..-+..|.-|+. .++
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFG 610 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFG 610 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH------Hhh
Confidence 1 1 11100100 00 12222 2334544455565555555555542 233
Q ss_pred hh----CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch
Q 003348 665 RS----GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 739 (828)
Q Consensus 665 ~~----g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e 739 (828)
+. -.++.|+..|.+.+...+-+=...|..+|..-.- +-++.+.+|.|..-| +.++.++..|++.|..|+...-
T Consensus 611 k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 611 KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 32 3578888888888777766555555555553332 226788899888877 7788899999999999998544
Q ss_pred hHH-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 740 GRV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 740 ~r~-~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
-+. ++.+ .++...-+|-..+.-+|..++.++......
T Consensus 689 l~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 332 2332 345555567788999999999999988765
No 211
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.25 E-value=1.2 Score=40.26 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=48.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHH
Q 003348 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANL 734 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanL 734 (828)
..+++++..+.+.+.+++..|+.+|+|++..........-..+...|.+++ ++++.+ ..++..|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHH
Confidence 678999999999999999999999999986443322222356777788877 555554 4455666554
No 212
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.18 E-value=0.4 Score=44.94 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=56.0
Q ss_pred CcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 708 GAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 708 G~V~~Ll~LL~--~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
.++..|+.+|+ .++.+..-|+.=|..++. +|.||..+-+.|+-..++++|.+.+++++.+|..++..+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 37788999983 334455567777888887 899999998889999999999999999999999999877643
No 213
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.02 E-value=0.1 Score=41.56 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
+..|=.|...=...++++|||..|+.| |=-+.-+.||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNC---FPGERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccc---cChhhccCCCCCCCcccCCC
Confidence 344666777777889999999999998 43334455999999987654
No 214
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.02 E-value=0.28 Score=38.57 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=32.4
Q ss_pred cccCccc--cccCCeecCCC-----cchhHHHHHHHHhcC-CCCCCCCC
Q 003348 241 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR 281 (828)
Q Consensus 241 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~~~~~-~~~cP~t~ 281 (828)
.|-||++ --.+|.+.||. +-+=+.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788885 56788888874 679999999999764 45799985
No 215
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.99 E-value=0.058 Score=65.05 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=41.4
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCC-CCCCCCCcCCCCCC
Q 003348 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLF-VCPKTRQTLAHTTL 289 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~-~cP~t~~~l~~~~l 289 (828)
+.|+||.+ ..+||++.|||.||+.|+.+.+..... .||.|+..+.+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 899999999999999999999886433 59999877665433
No 216
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.87 E-value=3.6 Score=45.02 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=110.7
Q ss_pred CcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchH---
Q 003348 585 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--- 660 (828)
Q Consensus 585 GaI~~Lv-~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k--- 660 (828)
+.+..|+ ..+.+.++.+++.|+.+|+-.+.-+. .+ ....++.+...++.++.+++..|+.+|+.+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---EL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 56778899999999999988875443 11 1234777888888889999999999999886532211
Q ss_pred ------HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHh-cC----CChHHHHHHHH
Q 003348 661 ------IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MD----PAAGMVDKAVA 729 (828)
Q Consensus 661 ------~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~L-L~----~~~~v~~~Al~ 729 (828)
........+..+.+.|.+.+++++..|+..++.|........ ...++..|+-+ ++ ++..++.--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 112234677888888998999999999999998866443322 13344444433 23 22344444445
Q ss_pred HHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003348 730 VLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 730 ~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+-..|......+..+...+++.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 566677755555566666778888777764
No 217
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=11 Score=45.74 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=137.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 003348 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 625 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~ 625 (828)
..|.++|.+.....+..|...|..+.....+. ...+|..|+-..+.+.++..-.---|...+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 46788888888888888887766554433221 235678888888888888876665565555543332221
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHH
Q 003348 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARI 704 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~i 704 (828)
-|..+-+-|+.++..+|..|+.+|..+= ..+..-=++-.+-+...+..+.+++.|+.||-.|=. .++.+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 3566778899999999999999988762 112111112223344456689999999999998855 44444433
Q ss_pred HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 705 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 705 v~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+..+-.|| +.++.++-.|+.+...+|- +.-..|. +-...|..++...++..|-.....|...|+.
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 33444456 5666677777777776663 3333332 3477888888888888888888888777764
No 218
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.60 E-value=0.07 Score=62.79 Aligned_cols=48 Identities=17% Similarity=0.381 Sum_probs=40.4
Q ss_pred cccccCccccccCCee---cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003348 239 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
.=.||+|..-+.|-.+ .+|||.||..||..|-+.. .|||.|+..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhee
Confidence 3479999999999887 4799999999999998864 6899999877553
No 219
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.16 Score=55.55 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=48.3
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
...+|.+++-.|.|||-+..|..||-..|--|++.. .+-|.||+++...+|++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 456899999999999999999999999999999974 67899999999999886
No 220
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.53 E-value=8.9 Score=41.96 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=109.8
Q ss_pred hhHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CC-cc
Q 003348 542 ETQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND-NN 618 (828)
Q Consensus 542 ~~~V~~Lv-~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~-~~ 618 (828)
.+.+..|| ..+++.++.+|..|+.+|..++--+.+. +. ..++.+...+..+++.++..|+.+|..+.. +. ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 45666665 7888999999999999999988865422 11 347778888877899999999999998853 21 11
Q ss_pred HH-------HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC----CHHHHHHH
Q 003348 619 KS-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDA 687 (828)
Q Consensus 619 k~-------~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~A 687 (828)
.. .......+..+.+.|.+.+++++..|+..++-|-....... ...++..|+-+--+. +++.+..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 12223567778889999999999999998888754322211 123344444433222 34444433
Q ss_pred HHHHHHchhcchhHHHHHHhCcHHHHHHhc
Q 003348 688 ATALFNLSIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 688 l~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
...+-..+..+...+..+....++.+..+.
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334556666666556677777777777766
No 221
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.19 Score=55.16 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCcccccCccccccCCee-----c-CCCcchhHHHHHHHHhcCCC--CCCCCCCcCCCCCCC
Q 003348 237 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTTLI 290 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~~~~~~~--~cP~t~~~l~~~~l~ 290 (828)
|---.|.||-+.+ |+. + .|||+|.-.|+.+||+..+. +||.|+-.+......
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 3445699996654 443 3 49999999999999997554 699998555554433
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=2.7 Score=50.84 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=33.9
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcCCCCCCCCCC
Q 003348 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ 282 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 282 (828)
.-.|..|...+.=|+| -.|||.|-+.|.+ .+...||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3579999999999998 6899999999988 44567999954
No 223
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.99 E-value=3.5 Score=47.78 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCC----hHHHHHHHHHHHHHhCCchhHH
Q 003348 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPA----AGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 668 ~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~----~~v~~~Al~~LanLa~~~e~r~ 742 (828)
....+.+++.+++...+..|+..|..|+.+......++...++..|..++ +.+ ..+...++.++..+-.+.-.--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35677888899998889899999999999999999999999999999998 322 3344455555554443322111
Q ss_pred HHHhCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 743 AIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~--s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
......+|.....+.. .....+-..|...|-++..++....+.+.++--++.|+..++.++.++...|..++..|..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1122334444445442 2345667788999999988888778888899999999999999999999999998886654
No 224
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.083 Score=55.12 Aligned_cols=55 Identities=18% Similarity=0.421 Sum_probs=44.2
Q ss_pred CcccccCccccccCCe----------ecCCCcchhHHHHHHHHhcC-CCCCCCCCCcCCCCCCCCc
Q 003348 238 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN 292 (828)
++=.|.+|+.-+-+-| .++|+|.|---||.-|.--| ..|||-|++.+....+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4567999997776666 58999999999999998755 4689999988776655544
No 225
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.78 E-value=0.27 Score=38.35 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=22.0
Q ss_pred ccCccccc--cCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 242 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 242 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
||+|.+-| +|=-.. +||+.+||-|-.+-...++..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 222233 57999999998888876667899999875
No 226
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=5.3 Score=51.39 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=127.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH-HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh-hc-CCccH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV-IANCGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~-i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~-~~~~k 619 (828)
.....|...+.+.++..+..++.-|..+.+.-...+.. .........+..+|...|+-+|..|..-|.-. .. +...|
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 34456677777999998876554444443321112211 11124447888899888888998888776432 11 22223
Q ss_pred HHHHHcCCHHHHHHhhcCCCHH-------H---------------HHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc
Q 003348 620 SAIANANAIEPLIHVLQTGSPE-------A---------------RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG 677 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e-------~---------------~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~ 677 (828)
.- .+..|+.-|-.|... . ....-.=|+||+. .+++...+...++|-+
T Consensus 898 ~~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 898 KS-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhh
Confidence 33 334455444333211 0 1111122233322 1223345566666666
Q ss_pred CC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HHHHhCCcHHHHH
Q 003348 678 NG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLV 754 (828)
Q Consensus 678 s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r-~~i~~~g~I~~Lv 754 (828)
++ .-..++-|+.-+..|+....-+.+-.-...||.|.+.= +++..++.....++..|...+... .... ......|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence 65 33455555555555554433222222345677777764 888888887777777777653332 2222 23566666
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 755 EVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 755 ~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.-+.+...++||.+|.+|..|-.+.+
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCC
Confidence 66777889999999999999998754
No 227
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.60 E-value=5.8 Score=48.53 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=139.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcchHHHHH-hhCChHH
Q 003348 595 HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGP 671 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~ 671 (828)
.++.|.+.-.|.+++...+.. ..+...+- -.+...+..+. +...-++..|+.+++..+... ...- ..+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHH
Confidence 345666666777777765432 12221111 12223333332 334556777777777665211 1111 1377888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHHHHhCC
Q 003348 672 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 748 (828)
Q Consensus 672 Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g 748 (828)
|.++....+.++...-..+|...+..+.-.....+.-+.|..+.++ .+++-++..+-.++..|+....+..-+. ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HH
Confidence 8888888888888888889998888777777778888888888876 4666777777777777776443333332 34
Q ss_pred cHHHHHHHHccCC----HHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 003348 749 GIPVLVEVVELGS----ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 749 ~I~~Lv~lL~s~s----~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~L-L~~g~~r~r~kA~~lL~~L~~ 819 (828)
.||.|+..|.... .....-|+.+|-.+.++.+.-....+-.-++|++.+. +.+++..+-..|.++|+.+-.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 6999999997654 5666777788877877765322222223356777775 445567788889999987644
No 228
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.27 Score=52.20 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=40.5
Q ss_pred cccCcc-ccccCCee----cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCC
Q 003348 241 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 241 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 289 (828)
.||+|. +.+..|-+ -+|||+.|-+|.-+-|..|...||.|+..|....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499998 66677753 38999999999999999998889999998876443
No 229
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.48 E-value=5 Score=42.99 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcchH
Q 003348 587 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK 660 (828)
Q Consensus 587 I~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g--~l~~Lv~lL~s----~~~e~~~~Aa~aL~nLS~~~e~k 660 (828)
+..+...+....++-+--++-.+.-+..++..-..+...+ ....+..++.. .....+.-++.++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3455555555544445556666655566655544444332 24444554433 35778888999999998888888
Q ss_pred HHHHhh-C-ChHHHHHhhcCC----CHHHHHHHHHHHHHchhcch-hH-HHHHHhCcHHHHHHhc---CCChHHHHHHHH
Q 003348 661 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYHE-NK-ARIVQAGAVKHLVDLM---DPAAGMVDKAVA 729 (828)
Q Consensus 661 ~~I~~~-g-~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~-n~-~~iv~~G~V~~Ll~LL---~~~~~v~~~Al~ 729 (828)
..+... + .+-..+..+... +..++..++++++|++..-- .+ ..-....++..+++.+ ..+.+..-+++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 777665 4 455555555444 67888999999999987321 11 1112233556666633 267889999999
Q ss_pred HHHHHhCCchhHHHHHhC-CcHHHHHHHH-ccCCHHHHHHHH
Q 003348 730 VLANLATIPDGRVAIGQE-NGIPVLVEVV-ELGSARGKENAA 769 (828)
Q Consensus 730 ~LanLa~~~e~r~~i~~~-g~I~~Lv~lL-~s~s~~~ke~Av 769 (828)
+|++|...+......... ++-..+.... ....+++++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 999999877777766664 3333333333 345677776554
No 230
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.24 E-value=6.6 Score=44.86 Aligned_cols=130 Identities=19% Similarity=0.146 Sum_probs=94.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCcc----hHHHHHhhCChHHHHHhhcCC-------CHHHHHHHHHHHHHchhcc
Q 003348 630 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 630 ~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~s~-------~~~~~~~Al~aL~nLs~~~ 698 (828)
-+..+++..+++-+-.|+-....+...++ +|..+.+.-+++.+-+||.+. +.-.+..++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35556666666666666666666665443 577788886688898998754 2345667777888888887
Q ss_pred hhHHHHHHhCcHHHHHHhc----CCC----hHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003348 699 ENKARIVQAGAVKHLVDLM----DPA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL----~~~----~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
+-...----..||.|++++ +++ ..+++.+-..|..++.++.|...++..|+++.+.++-.-
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 7543322345789999988 222 237899999999999999999999999999999876543
No 231
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=0.24 Score=54.75 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCcccccCccccccCCe-----e---cCCCcchhHHHHHHHHhcCC------CCCCCCCCcCC
Q 003348 237 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA 285 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~~~~~~------~~cP~t~~~l~ 285 (828)
-.+..|-||++.-.+++ . .+|-|+||-.||.+|-.... ..||+||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999999999998 3 45999999999999984332 56999997643
No 232
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.10 E-value=16 Score=36.68 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCC-hHHHHHhh
Q 003348 598 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA-IGPLVDLL 676 (828)
Q Consensus 598 d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~-I~~Lv~LL 676 (828)
++.++.+++.+|+.|+..-.+ ++ ...++.+...|+++++.+|..|+.+|..|...+-.|. .|- +..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 577889999999988753221 11 2458889999999999999999999999976433221 233 37788888
Q ss_pred cCCCHHHHHHHHHHHHHchhc
Q 003348 677 GNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 677 ~s~~~~~~~~Al~aL~nLs~~ 697 (828)
.+.+++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 233
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.07 E-value=3.2 Score=41.72 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=78.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC---------CCHHHHHHHHHHHHHh
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL 612 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s---------~d~~v~e~A~~aL~nL 612 (828)
.....+++.+++..... ..+..|+..-+.. ..--..+.+.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677888887665432 4555555433333 2334556678999999998853 3567888999999888
Q ss_pred hcCCccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 003348 613 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS 654 (828)
Q Consensus 613 s~~~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS 654 (828)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 877777777765 589999999999999999999999888765
No 234
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.23 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=28.3
Q ss_pred ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 254 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 254 ~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
++||.|.|-|.|+++|.+.-.-.||+||++|..
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 469999999999999999654579999999864
No 235
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.99 E-value=42 Score=41.74 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=118.5
Q ss_pred hHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc----CCC----HHHHHHHHHHH
Q 003348 543 TQVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTAL 609 (828)
Q Consensus 543 ~~V~~Lv~~L~s-----~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~----s~d----~~v~e~A~~aL 609 (828)
+.+..|+..+.+ +..+.-...+..|+..++ -..||..+.+.|+++.|+..|. .+. +.+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 345556666553 222333345555556666 5789999999999999999874 333 56667766666
Q ss_pred HHhhcCCccHHH-----HH--------HcCCHHHHHHhhcCC----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHH
Q 003348 610 LNLSINDNNKSA-----IA--------NANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 672 (828)
Q Consensus 610 ~nLs~~~~~k~~-----I~--------~~g~l~~Lv~lL~s~----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L 672 (828)
..|......... .. ....+..|+..+.+. +..+....+.+|-+|+..+..+....-.- +.+.
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F~p~ 274 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-FKPY 274 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHHh
Confidence 555322111000 01 112366677777654 47788888999999988655443332211 1222
Q ss_pred HHhhc--CC-CHHHHHHHHHHHHHchh----c---chhHHHHHHhCcHHHHHHhc-C--C------ChHH--------HH
Q 003348 673 VDLLG--NG-TPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLM-D--P------AAGM--------VD 725 (828)
Q Consensus 673 v~LL~--s~-~~~~~~~Al~aL~nLs~----~---~~n~~~iv~~G~V~~Ll~LL-~--~------~~~v--------~~ 725 (828)
+++=+ .. ..+- ...+.+++.++. + ..-|..+++.|++...++.| . + +++. ..
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 22211 11 1111 122444444443 1 23557788999999888876 1 1 1222 34
Q ss_pred HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc
Q 003348 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.++.+|.-||......+.+...+++ .++..|+.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 5788888888855544444555666 44455543
No 236
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.97 E-value=11 Score=42.87 Aligned_cols=216 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-C---CCHHHHHHHHHHHHHhhcCCccHH
Q 003348 545 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNKS 620 (828)
Q Consensus 545 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s---~d~~v~e~A~~aL~nLs~~~~~k~ 620 (828)
+..+++.-..-.+.+-..|+..+..+....|..-..+.++|.++.++..+. . ...++....-.+|.-|+.+..+.+
T Consensus 111 L~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~ 190 (379)
T PF06025_consen 111 LKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLE 190 (379)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHH
Confidence 444444444445677788999999999999999999999999999999887 4 356666666677777889999999
Q ss_pred HHHHcCCHHHHHHhhcCCCH-H-HHH-HHHHHH----HHhcc-CcchHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHH
Q 003348 621 AIANANAIEPLIHVLQTGSP-E-ARE-NAAATL----FSLSV-IEDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 621 ~I~~~g~l~~Lv~lL~s~~~-e-~~~-~Aa~aL----~nLS~-~~e~k~~I~~~--g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
.+.+.+.++.+++++.+..- . .+. ..+..| -.|.. ++..|..+.+. ..+..++.+-+......-..+-..
T Consensus 191 ~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~ 270 (379)
T PF06025_consen 191 KVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLW 270 (379)
T ss_pred HHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 99999999999999977541 1 111 233333 33444 23445555443 444444444333221110000000
Q ss_pred H-------------HHchhcchhHHHHHHhC-cHHHHHH-hcC-------------------CChHHHHHHHHHHHHHhC
Q 003348 691 L-------------FNLSIYHENKARIVQAG-AVKHLVD-LMD-------------------PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 691 L-------------~nLs~~~~n~~~iv~~G-~V~~Ll~-LL~-------------------~~~~v~~~Al~~LanLa~ 736 (828)
. .+.....+. ......+ .+..... -.+ .-...+...+..|..+-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fs 349 (379)
T PF06025_consen 271 TEDSQGKPVVSGESSAVSTDEEM-EEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFS 349 (379)
T ss_pred ccccCCCCCCCCCcccccccccc-ccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcC
Confidence 0 000000000 0000000 0000000 000 001345788888888889
Q ss_pred CchhHHHHHhCCcHHHHHHHHccCC
Q 003348 737 IPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 737 ~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
+.+.+..+++.||+..|++++..++
T Consensus 350 N~~~C~~FVe~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 350 NSDHCREFVEKGGIELLLDLLTLPS 374 (379)
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 9999999999999999999987643
No 237
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.24 E-value=0.28 Score=52.31 Aligned_cols=42 Identities=33% Similarity=0.679 Sum_probs=36.4
Q ss_pred ccccCccccccC---CeecCCCcchhHHHHHHHHhcCC--CCCCCCC
Q 003348 240 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTR 281 (828)
Q Consensus 240 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~ 281 (828)
|.||+..+.-+| ||++.|||..-+.++.+--++|. ..||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899999998876 89999999999999988877764 3599994
No 238
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=88.20 E-value=4.4 Score=43.23 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHhhcC
Q 003348 560 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQT 637 (828)
Q Consensus 560 q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs-~~~~~k~~I~~~g~l~~Lv~lL~s 637 (828)
...|+..|.-++--.+..|..+.+...+..|+.+|.. ..+.++..++.+|..+- .++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4567788888887788999999999999999999954 57889999999887764 557899999999999999999987
Q ss_pred CC--HHHHHHHHHHHHH
Q 003348 638 GS--PEARENAAATLFS 652 (828)
Q Consensus 638 ~~--~e~~~~Aa~aL~n 652 (828)
.. .+++...+..|+-
T Consensus 188 ~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccHHHhHHHHHHHHH
Confidence 63 6676666666553
No 239
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.18 E-value=11 Score=40.16 Aligned_cols=195 Identities=25% Similarity=0.262 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--
Q 003348 542 ETQVRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-- 617 (828)
Q Consensus 542 ~~~V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~-- 617 (828)
+..|+.|+..|. +..+-++..|..+|..+.. . +..+.|-+..+.+...+.+....++..+-+-..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 456888888887 4456677788888877652 1 345566666655566666666666655532110
Q ss_pred ---cHHHH--------HHcCCHHHHHHhhcCCC-H-HHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHH
Q 003348 618 ---NKSAI--------ANANAIEPLIHVLQTGS-P-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 684 (828)
Q Consensus 618 ---~k~~I--------~~~g~l~~Lv~lL~s~~-~-e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~ 684 (828)
+.... ...+-+..|-..|...+ . .-+..|+-.|.|+ +...+|..|++=+..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence 00000 01122344443333332 2 2233333333332 223457777777777777788
Q ss_pred HHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCC
Q 003348 685 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 685 ~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
..++.++..| ...-.|+.|.+.| + ..+-++..|+.+|..++. ...++.|.+++....
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 8888887665 4455788888877 2 345566788888887653 456888888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 003348 762 ARGKENAAAALLQLCT 777 (828)
Q Consensus 762 ~~~ke~Av~~L~~L~~ 777 (828)
+-+++.|..+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765543
No 240
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.76 E-value=0.12 Score=43.81 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=23.5
Q ss_pred cccccCcccccc----CCeec----CCCcchhHHHHHHHHhc--CC--------CCCCCCCCcCCC
Q 003348 239 DFCCPLSLELMT----DPVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~----dPV~~----~~G~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~~ 286 (828)
+..|+||..... .|+++ .||++|=..|+.+||.. +. .+||.|+++++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998654 25553 58999999999999974 11 249999988753
No 241
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.66 E-value=31 Score=40.93 Aligned_cols=131 Identities=22% Similarity=0.313 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I 622 (828)
.-..++...+ ++...+.-|+..|..+.+.-++-.. .+|..++.++..+|..++..|+..|-.++.+ ++....+
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 3455555555 5678899999999999998776544 4788999999999999999999999999876 3344443
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc---CCCHHHHHHHHHHHH
Q 003348 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF 692 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---s~~~~~~~~Al~aL~ 692 (828)
.+.|+++|.+.+..-...+-.+|..|-..+ ..+.+..|..-+. +++..++..++..|.
T Consensus 98 -----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 -----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 567889998877543333333333332111 1244455555444 456667777776664
No 242
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.11 E-value=43 Score=38.62 Aligned_cols=185 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHcCCHHHHHHhhcCCC-------HHHHHHHHHHHHHhccCcch
Q 003348 591 VDMLHSSETKIQENAVTALLNLSIN----DNNKSAIANANAIEPLIHVLQTGS-------PEARENAAATLFSLSVIEDN 659 (828)
Q Consensus 591 v~lL~s~d~~v~e~A~~aL~nLs~~----~~~k~~I~~~g~l~~Lv~lL~s~~-------~e~~~~Aa~aL~nLS~~~e~ 659 (828)
..++...+..-+-.|+-....+..+ ..+|..+.++-|++-+=++|.+++ ...+..+..+|.-.+..++.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 3444444444444444445555544 346888888877777777776542 34566777778777777664
Q ss_pred HHHHHhhCChHHHHHhhcCC-CH------HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHH
Q 003348 660 KIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAV 730 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s~-~~------~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~ 730 (828)
...---...||.|..++..+ ++ ....++-.+|..++..+.....++..|+++.+.++- .....-...++.+
T Consensus 97 Ash~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~V 176 (698)
T KOG2611|consen 97 ASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKV 176 (698)
T ss_pred ccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHH
Confidence 32211125688898888654 22 377899999999999999999999999999999864 2222222334444
Q ss_pred HHHHhC----CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 731 LANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 731 LanLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+..+.. .++.-..+.. .|..+..=+...+...+-..+.+|..+-.
T Consensus 177 lll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 177 LLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 433332 2222222222 14444443444556677777777765443
No 243
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.06 E-value=15 Score=45.25 Aligned_cols=218 Identities=18% Similarity=0.204 Sum_probs=129.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHHH
Q 003348 545 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSA 621 (828)
Q Consensus 545 V~~Lv~~L-~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~--~~~k~~ 621 (828)
...+.+.+ +...+.++..++..+..+++.-+. .....+.++.++.++..+...+++.|...+.++... ...
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--- 311 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--- 311 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---
Confidence 33444443 456788888899999998885433 566679999999999988888999999988887432 221
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh--cch
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHE 699 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~--~~~ 699 (828)
=...-..+.++...+.++...+...+...+.|+..-+. ..+...-+++...+++....+++..++.-...++. +.+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 12234678888999999988888888888777542111 22233456777777777666666666655554444 333
Q ss_pred hHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 700 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
....+....+++.+-.+. +.+..+....+.....+...-. +..-+ ....|.+...++...+.++.+-...+
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHH
Confidence 444555555667666665 4444444433333333322100 00000 11234444445555555555555443
No 244
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.03 E-value=12 Score=44.53 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=101.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh---cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 003348 548 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 624 (828)
Q Consensus 548 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~---~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~ 624 (828)
.+..+..-.++++.-|+..||.+.++...+-..+-. +..+..|+..+. .++..+.-++++|.|+-.++.++..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 444455667888999999999999976655544432 235555555554 5677788899999999888778877775
Q ss_pred c--CCHHHHHHhhcCC-CHHHHHHHHHHHHHhcc--CcchHHHHHhhCChHHHHHhhcCC-----CHHHHHHHHHHHHHc
Q 003348 625 A--NAIEPLIHVLQTG-SPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNG-----TPRGKKDAATALFNL 694 (828)
Q Consensus 625 ~--g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~s~-----~~~~~~~Al~aL~nL 694 (828)
. -.+.+++. .++. +..++...+....|++. ...+-+ .+..+.|..++... +-+.....+.||.+|
T Consensus 628 ~~~~i~~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 628 RLESILDPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHhhhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 4 12222222 2233 34566555555566653 211111 34444444444321 335666777889999
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc
Q 003348 695 SIYHENKARIVQAGAVKHLVDLM 717 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL 717 (828)
+..+.+..++...--|..+++-+
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHH
Confidence 98888888877766666666655
No 245
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.67 E-value=1.1 Score=44.23 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=91.2
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHH-
Q 003348 628 IEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKAR- 703 (828)
Q Consensus 628 l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~- 703 (828)
++.++..|.. ...++|..++-++..+- +..+... ..-+-+.+-.++..+..+....++.++..|-. .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4445554443 45667777777777662 2233332 22233444444555545567777777777755 3444444
Q ss_pred HHHhCcHHHHHHhcC---CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc-cCCHH-HHHHHHHHHH
Q 003348 704 IVQAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSAR-GKENAAAALL 773 (828)
Q Consensus 704 iv~~G~V~~Ll~LL~---~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~-~ke~Av~~L~ 773 (828)
+...|.++.++.++. .+..+...++.+|..-|.....|..|.+ .+++.|-++++ +.++. +|..|+.+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 446899999999884 4566777888888888888888887776 46899999995 45566 6888877765
No 246
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=11 Score=46.55 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=151.5
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHHHHhhcCCC---
Q 003348 564 TAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGS--- 639 (828)
Q Consensus 564 l~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k~~I~~~g~l~~Lv~lL~s~~--- 639 (828)
..+|..|-+.+.+|...+.++.++..++.++-+ .+-+...+.++..|-. ++.. +....+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 456777888899999999999888888888833 3333444444444422 2221 11223456677777642
Q ss_pred ---------HHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHHc-----
Q 003348 640 ---------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL----- 694 (828)
Q Consensus 640 ---------~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s----------~~~~~~~~Al~aL~nL----- 694 (828)
.......++++|.+.. +...+..+++.+++..|..+|.. ++.-+-..-...|+.+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1245566788887764 45567778888888888777632 1222222222233332
Q ss_pred hhcchhHHHHH-------------HhC---------cHHHHHHhc-C--CChHHH--HHHHHHHHHHh------CCc---
Q 003348 695 SIYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLA------TIP--- 738 (828)
Q Consensus 695 s~~~~n~~~iv-------------~~G---------~V~~Ll~LL-~--~~~~v~--~~Al~~LanLa------~~~--- 738 (828)
|.+..|+.++- +.| +|..|.++- + .-+.+. ..|++-+..+- ..|
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33555654432 223 223333221 0 001111 12222222221 122
Q ss_pred --hhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc---CCCHHHHHHHHHH
Q 003348 739 --DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQAL 813 (828)
Q Consensus 739 --e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~---~g~~r~r~kA~~l 813 (828)
..++.|.+.|++..|+..+....++.+..-...|-.+++.++.........|.+..|++++. +|++..--.|..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 23577888999999999998899999999999999999999888888888899999888765 4555555566666
Q ss_pred HHHhhccc
Q 003348 814 LSYFRNQR 821 (828)
Q Consensus 814 L~~L~~~~ 821 (828)
+.+|...+
T Consensus 977 vemLgayr 984 (2799)
T KOG1788|consen 977 VEMLGAYR 984 (2799)
T ss_pred HHHHhhcc
Confidence 66665544
No 247
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=32 Score=41.72 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=88.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHh--------
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNL-------- 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nL-------- 612 (828)
+..+|.+...|...+..+++.|.-++..+-+... ..+ .++-+.+-.+|.. .|+....+|...|...
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y 207 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY 207 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH
Confidence 4567888888999999999999988887766321 111 1344444445533 3555555554433221
Q ss_pred ----h-----cCCccHHHHHH-------------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChH
Q 003348 613 ----S-----INDNNKSAIAN-------------ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIG 670 (828)
Q Consensus 613 ----s-----~~~~~k~~I~~-------------~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~ 670 (828)
. .++.-+..|++ +..|..+..+|.+.+..++..|+++|.+|+.++..-. .+..
T Consensus 208 l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-----~Aa~ 282 (948)
T KOG1058|consen 208 LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-----AAAS 282 (948)
T ss_pred HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-----HHHH
Confidence 0 01111111111 1245555566666666666666666666654433211 1112
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc
Q 003348 671 PLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 738 (828)
Q Consensus 671 ~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~ 738 (828)
.+++++... +-.++...+--|..|. .+... +-.|.+--++.+| .++-+++.+++.+..-|+++.
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~---~~~~~-il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELK---ALHEK-ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHh---hhhHH-HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 223332211 1112221122222221 11111 1123333445555 467788888888777776643
No 248
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=91 Score=37.75 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=113.2
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc-CCCHH
Q 003348 563 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE 641 (828)
Q Consensus 563 Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~-s~~~e 641 (828)
.+.+.-+|+.+-+.....+. .++..|.++|.+....++.-|+..+..|+..+.....+-.. .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 44455556655444444444 36788888888888888888888888887776555555544 788899998 56788
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh--------cchhHHH-------HHH
Q 003348 642 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--------YHENKAR-------IVQ 706 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~--------~~~n~~~-------iv~ 706 (828)
++..|+..|..++... |...| +..|++.|.+-+..++++-+.=+.-|+. +-+...+ .++
T Consensus 385 irrravDLLY~mcD~~-Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVS-NAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhchh-hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 9999999999887543 43334 4567777777666665544443333332 1111122 234
Q ss_pred hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCc
Q 003348 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 749 (828)
Q Consensus 707 ~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~ 749 (828)
.++...++++.-.++++...|+..+......+..-+.|+..|+
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 5666777777766677777777666655555555555555443
No 249
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.70 E-value=0.57 Score=50.45 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcccccCccccccC--Cee--cCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003348 238 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 238 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
+|+ ||+|.+-|.- --. -+||+..||-|-...-+.-+..||.||...+...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 9999998853 222 4689999999855443433457999998887753
No 250
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.57 E-value=56 Score=35.05 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=46.9
Q ss_pred CcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 748 NGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 748 g~I~~Lv~lL~s--~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
-.|+.|.+.|.. .++-+|..|+.+|..++.. ..++.|.+++....+-+++-+.-.|.++-
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 358899888864 6789999999999988753 35677788888888888888877777654
No 251
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=17 Score=44.60 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=124.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHH
Q 003348 592 DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGP 671 (828)
Q Consensus 592 ~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~ 671 (828)
..+.++-+.++..|++.|..+.........+...+.+...+..|++.+..+-.+|...+..|+.. .....++.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 34444556678888888888876655566677778999999999998888877888766666543 23355666
Q ss_pred HHHh-hcCC---CHHHHHHHHHHHHHchhc-chhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH--HH
Q 003348 672 LVDL-LGNG---TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR--VA 743 (828)
Q Consensus 672 Lv~L-L~s~---~~~~~~~Al~aL~nLs~~-~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r--~~ 743 (828)
|.+. .... .++-+...-.++.++... .+-..+.. +-.+...+..+ +++...+.-++++|++||.-..++ ..
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 6663 3222 122333333566665441 12111111 13333344444 566667888899999998733321 22
Q ss_pred HHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHHhHHHHHhC---CCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 003348 744 IGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQE---GAVPPLVALSQSG-TPRAKEKAQALLS 815 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~---g~v~~L~~LL~~g-~~r~r~kA~~lL~ 815 (828)
+. ..+..++.+.+ +++.-+|..|+-++..+-.+.+...-.+.++ .....+..+.... ++.+|-.|...|.
T Consensus 886 ~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 886 FH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22 23455555555 4788999999999988877665433333322 2233334443333 3445555544333
No 252
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=85.24 E-value=8.8 Score=47.07 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=114.7
Q ss_pred HHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH--HHHHhhcCCCH-H
Q 003348 566 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGSP-E 641 (828)
Q Consensus 566 ~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~--~Lv~lL~s~~~-e 641 (828)
.|...+..+++++..+.+.|++..+...+.. +..+++..++..|.|++.....+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999986 567799999999999987654444433222222 33335555444 7
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHH-HHHhc--C
Q 003348 642 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D 718 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~-Ll~LL--~ 718 (828)
.-.+|+.+|..+..+.+. ....+.-+..-+++. .++........++.-...+.. +..++ .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~--------------e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLV--------------EAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHH--------------HHhhccCccceeehhhhhcchhHHHHhccc
Confidence 778888888887654332 111122222222211 111112222222222222222 44444 3
Q ss_pred CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 003348 719 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 772 (828)
Q Consensus 719 ~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L 772 (828)
.....+--|++++.+++. +++....+.+.++++.+.++-.. ....+++.+..++
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 445567788888888888 66667777778887777665432 2444555555444
No 253
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.16 E-value=1.3 Score=50.36 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhcCCccHHH-HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-----Ccc---hHHHHHhhCChHH
Q 003348 601 IQENAVTALLNLSINDNNKSA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-----IED---NKIKIGRSGAIGP 671 (828)
Q Consensus 601 v~e~A~~aL~nLs~~~~~k~~-I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-----~~e---~k~~I~~~g~I~~ 671 (828)
+...|.+++..+..++..+.. +.-..+...++..|.+.....++.+++++.|++. .+. ....+... .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHH
Confidence 445667777666666554332 2334566667777766667788999999998863 111 12222111 1222
Q ss_pred HHHhh---cCCCHHHHHHHHHHHHHchhcch----hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH
Q 003348 672 LVDLL---GNGTPRGKKDAATALFNLSIYHE----NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 672 Lv~LL---~s~~~~~~~~Al~aL~nLs~~~~----n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
+..+- .-...+++.+|..+|.|+...-+ .....+..|.+..++.-. .....++.+|+.++.||-.++.-.-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22221 12357899999999999977332 112223344444444422 4556788999999999999876532
Q ss_pred HHH--hCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhC
Q 003348 743 AIG--QENGIPVLVEVVEL-GSARGKENAAAALLQLCTN 778 (828)
Q Consensus 743 ~i~--~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~ 778 (828)
+-. ...+.+.|..++.+ .+=++|-+|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 222 22347888888865 6778899999988776653
No 254
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.06 E-value=19 Score=41.31 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCcc
Q 003348 541 IETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL-~s~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
....+..++....+. ++..+..++..+..|.-.-+..- .+ ..++..+...+ ...+...+..++.++.-++
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~----- 258 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT----- 258 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----
Confidence 345778888886643 56677778888887765421111 11 12334444434 2333444444444443332
Q ss_pred HHHHHH-----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cch--------HHHHHhh----CChHHHHHhhcCCC
Q 003348 619 KSAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGT 680 (828)
Q Consensus 619 k~~I~~-----~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~-~e~--------k~~I~~~----g~I~~Lv~LL~s~~ 680 (828)
|..++. ...+..|+.+|.+ .++...|+..+.-|..+ ++. -+.+.+. ..+|.|++-.+..+
T Consensus 259 KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 259 KALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred HHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC
Confidence 222222 1346678888866 56677778777777655 221 1222222 45677777777777
Q ss_pred HHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCc
Q 003348 681 PRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP 738 (828)
Q Consensus 681 ~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~~~ 738 (828)
...+...+.||.+|..+-.....+-+ ..++|.|++-|+ ++..+...++.+|..+....
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77888889999999885553333333 558888888884 66778889999999888754
No 255
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.73 E-value=0.47 Score=57.31 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=34.2
Q ss_pred cccCcccccc--C---Ceec--CCCcchhHHHHHHHHhc-CCCCCCCCCCcCC
Q 003348 241 CCPLSLELMT--D---PVIV--ASGQTYERAFIKKWIDL-GLFVCPKTRQTLA 285 (828)
Q Consensus 241 ~CpI~~~lm~--d---PV~~--~~G~ty~r~~I~~~~~~-~~~~cP~t~~~l~ 285 (828)
-|+||.-+.. | |=-. .|.|.|--+|+-+|+.. ++.+||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998864 3 3222 36789999999999986 4567999996554
No 256
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=0.57 Score=54.47 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=40.1
Q ss_pred CcccccCccccc----cCCeecCCCcchhHHHHHHHHhcCCCCCC--CCCCc--CCCCCCCCcHHHHHHH
Q 003348 238 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCP--KTRQT--LAHTTLIPNYTVKALI 299 (828)
Q Consensus 238 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~~~~~~~~cP--~t~~~--l~~~~l~pN~~l~~~i 299 (828)
+-++|+||..+| ..||.+-||||.|+.|.+.-... +|| .-.-. ...+...-|++|-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence 457899997666 57999999999999999987654 577 22111 1223444567665554
No 257
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=84.16 E-value=0.84 Score=46.99 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=47.8
Q ss_pred cccccCccccccCCee-cCCCcchhHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCCcHHH--HHHHHHHH
Q 003348 239 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANWC 303 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l--~~~i~~~~ 303 (828)
+.+|||+..-..-|++ ..|.|.|||..|.++++-. ...||. |-+.+..+.++-.+.| |..|...+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 4689999999999987 5799999999999999843 234886 5566777777655444 44444443
No 258
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=87 Score=41.08 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=123.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccH
Q 003348 544 QVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNL-SINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k 619 (828)
.|=++.++-+ +..+.-+.-|+.-+..+++.. +..+... -.||.|.+.-.+++..+|. |.+-++|. ..+..+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKV 1032 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHH
Confidence 3334444443 224445566777777777633 3333332 5788888888888888875 44445554 3333222
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHH---HHHHHHch
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDA---ATALFNLS 695 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~A---l~aL~nLs 695 (828)
..-.-...+.-|+.-|.+....+|+.++.+|..|-...+.-...-.. ..+..+.+.+.+=...++++| +.+|..|+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223456777777777778899999999999997754433222222 556666666655445555544 44555554
Q ss_pred h-----cchhHHHHHHhCcHHHHHH--hcCCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCH
Q 003348 696 I-----YHENKARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 762 (828)
Q Consensus 696 ~-----~~~n~~~iv~~G~V~~Ll~--LL~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~ 762 (828)
. .+..+.+-+-.-++|.|+. +++.-.+++.-++.++.-|+.+..+.-.-.-...||.|++....-++
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 4 2223333333445555554 33444678888999999998865442111112346666666554433
No 259
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.68 E-value=2.2 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 003348 750 IPVLVEVVELGSARGKENAAAALLQLCTN 778 (828)
Q Consensus 750 I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~ 778 (828)
+|.+++++.+.++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998863
No 260
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.65 E-value=1.7 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSI 614 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~ 614 (828)
.+|.+++++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998863
No 261
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.48 E-value=24 Score=43.83 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH---HHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAI---NILVDMLHS-SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI---~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+.+.|-..+.+.++..+.+|+..+........ .....|.. -.++..... .+..+.-.|+.+|.-++..-...
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44566777778889999999999987766332 22233333 333433332 45666677777777776431111
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cc
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH 698 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~ 698 (828)
..=...+.++.|+.-+......++..+..++-.... .......++.+...+++++++.+..+...+..... ..
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 112234678888888887777777766666554432 11123567888888999999999887777665544 22
Q ss_pred -hhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003348 699 -ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 699 -~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
.+...-.-.++++.++... +.+.+++..|+.+++.+-.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2333333456667777766 6778888888877766544
No 262
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.36 E-value=27 Score=41.64 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=105.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh
Q 003348 591 VDMLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 666 (828)
Q Consensus 591 v~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~----~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~ 666 (828)
+..+.....+++.-|+-+|.-+..+...-..+.. ...+..++..+. +.+.-+..++++|.|+-.+...+..+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344455677778888888777666554444433 235666666665 56777888999999998776666665543
Q ss_pred --CChHHHHHhhcCC-CHHHHHHHHHHHHHchh--cchhHHHHHHhCcHHHHHHhc----CC--ChHHHHHHHHHHHHHh
Q 003348 667 --GAIGPLVDLLGNG-TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DP--AAGMVDKAVAVLANLA 735 (828)
Q Consensus 667 --g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~--~~~n~~~iv~~G~V~~Ll~LL----~~--~~~v~~~Al~~LanLa 735 (828)
..+..++.. +.. +..++.+-++...|++. ..++-+ .|..+.|..++ ++ +-+..-+.+.+|.+|+
T Consensus 629 ~~~i~~~~~~~-~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 LESILDPVIEA-SSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHhhhhhhh-hcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 222222222 233 34555555555666654 222211 45555555543 32 2234456788899999
Q ss_pred CCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHH
Q 003348 736 TIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAA 770 (828)
Q Consensus 736 ~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~ 770 (828)
..+.....+...-.+..+++.+++ .+.....+.+.
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 998888888887778888888875 34333333333
No 263
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.17 E-value=10 Score=46.35 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=108.7
Q ss_pred hcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHH
Q 003348 635 LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 714 (828)
Q Consensus 635 L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll 714 (828)
+.++-..++.+++..|..+....+.+..+...+++....++|++.++-+--+|...+..||.. ....++|.|.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~ 808 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLS 808 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHH
Confidence 334445577788888888887666677777789999999999999988888888877777762 2234556666
Q ss_pred H-hcC----CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003348 715 D-LMD----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 715 ~-LL~----~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
+ ..+ ...+.+-....++.+++. -.+-..... +-.+...+..+++++..-|..+++++.+||..........+-
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 6 331 112233333344444432 111111111 123556666667666677899999999999754322222221
Q ss_pred CCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003348 789 EGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 789 ~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
.++..++.+.+.+ ..-+|+.|+.++..+-.
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2344555555544 56788999888876654
No 264
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=83.11 E-value=1.1e+02 Score=36.35 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003348 544 QVRKLVEDLKSTS----LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 544 ~V~~Lv~~L~s~~----~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...+|++.+.... .-....-++.+..|.+.++..+..+ .|.|-.-|++...-++-+++.++..++...-.
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~- 297 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG- 297 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-
Confidence 4566777776543 1111223455556666666555554 45666666666677888888888887643211
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE 657 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~ 657 (828)
..++ ...+..|-.+|++.....|-.|+.+|..|+...
T Consensus 298 ~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 298 SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 1111 134666777888888899999999999998643
No 265
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=82.80 E-value=12 Score=45.98 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=120.8
Q ss_pred HHHHhhcC-CccHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHhhCChH--HHHHhhcCCCH-H
Q 003348 608 ALLNLSIN-DNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIG--PLVDLLGNGTP-R 682 (828)
Q Consensus 608 aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~--~Lv~LL~s~~~-~ 682 (828)
+|.++..+ +.+...+.+.|++..+.+.++.- ..+.+..+.+.+.+++...+++........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 66677544 66788899999999999999864 57789999999999998766554443322222 33334444333 6
Q ss_pred HHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHH-HHhCCchhHHHHHhCCcHHH-HHHHHc-c
Q 003348 683 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA-NLATIPDGRVAIGQENGIPV-LVEVVE-L 759 (828)
Q Consensus 683 ~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~La-nLa~~~e~r~~i~~~g~I~~-Lv~lL~-s 759 (828)
.-..|+..|+.+..+.+. ....+. .+.+...+. .+.........+.....+.. +..++. +
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~--------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF--------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc--------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 677777777777665443 111111 112221111 12222222222222222222 555554 4
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 003348 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYF 817 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L 817 (828)
..+..+..|++++.+++...++++..+.+.|+++.+..+-... ...++..+..++...
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 7889999999999999999999999999999999988875544 345566666555443
No 266
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.80 E-value=6.3 Score=33.80 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCC
Q 003348 724 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEG 790 (828)
Q Consensus 724 ~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g 790 (828)
...|+++++++++.+.|...+-+.+.++.++++.+. ....+|--|..+|.-++.. .+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 467999999999999999999988999999999975 6677787777777766664 33455554443
No 267
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.72 E-value=12 Score=47.34 Aligned_cols=142 Identities=22% Similarity=0.180 Sum_probs=107.5
Q ss_pred hhHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCC
Q 003348 542 ETQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIND 616 (828)
Q Consensus 542 ~~~V~~Lv~~L~----s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~ 616 (828)
..++|.+++..+ .++|+.|..|.-+|..|..-+.+.+. ...|.|+..+. ++++.++.+++-+|+.|+..=
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 456777888774 55799999999999998876644332 35899999997 689999999999999997542
Q ss_pred ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 617 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
+|- + .-.-+.|...|...+..+|.+|..+|.+|-..+ .|--.|.++.+..+|.+++.+++..|-.....|+.
T Consensus 993 pnl---i-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNL---I-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc---c-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 1 123456778889999999999999999996543 34445999999999999999888877755555543
No 268
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.01 E-value=4.1 Score=42.81 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhCCc-------HHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCHHhHH-HHHhCCCHH
Q 003348 723 MVDKAVAVLANLATIPDGRVAIGQENG-------IPVLVEVV-ELGSARGKENAAAALLQLCTNSSRFCS-MVLQEGAVP 793 (828)
Q Consensus 723 v~~~Al~~LanLa~~~e~r~~i~~~g~-------I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~~~~~-~v~~~g~v~ 793 (828)
-+..|+.+|..|+-.+.+...+...+- +..|++++ ..+++-.||.|+.+|.+||..+...+. ...+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 357788888888888888777776553 33444444 347889999999999999999987764 445688999
Q ss_pred HHHHhhcCCCHHHHHHH
Q 003348 794 PLVALSQSGTPRAKEKA 810 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA 810 (828)
.|+..+......+...+
T Consensus 220 ~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988765544433
No 269
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=0.4 Score=40.69 Aligned_cols=50 Identities=30% Similarity=0.503 Sum_probs=34.2
Q ss_pred CCCcccccCccccccC-Ceec-CCCcchhHHHHHHHHhcC--CCCCCCCCCcCC
Q 003348 236 IPSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 285 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 285 (828)
.|-+=.||-|.-.=.| |.++ -|-|.|-+.||.+|+... ...||.|||...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444556655433222 4444 689999999999999853 345999999754
No 270
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.89 E-value=64 Score=35.90 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=113.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChhhHHHHHhc-C-cHHHHHHHHcCC-----C--------HHHHHHHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIANC-G-AINILVDMLHSS-----E--------TKIQENAV 606 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~-~s~~nr~~i~~~-G-aI~~Lv~lL~s~-----d--------~~v~e~A~ 606 (828)
..++.+.+.|.+.....+..+++.|..++. .+......+... + -.+.|..++... + +.++...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 457788889988888888889999999888 665555555543 3 344566666321 1 27777888
Q ss_pred HHHHHhhcC--CccHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCc----chHHHHHhhCChHHHHHhhcC
Q 003348 607 TALLNLSIN--DNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS-VIE----DNKIKIGRSGAIGPLVDLLGN 678 (828)
Q Consensus 607 ~aL~nLs~~--~~~k~~I~~-~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~----e~k~~I~~~g~I~~Lv~LL~s 678 (828)
..+..+... ...+..+.+ .+.+..+.+-|...+.++....+.+|..-. .++ ..|..+....++..|+.+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 777666433 344666654 467888999999988999999999998533 322 346667777889999998876
Q ss_pred CCH----HHHHHHHHHHHHchhcchhH
Q 003348 679 GTP----RGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 679 ~~~----~~~~~Al~aL~nLs~~~~n~ 701 (828)
..+ .+...+-..|..+|.++.+-
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCcc
Confidence 666 78888888999998765543
No 271
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.80 E-value=80 Score=33.99 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=124.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCcc-HHHHH
Q 003348 547 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNN-KSAIA 623 (828)
Q Consensus 547 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~-k~~I~ 623 (828)
.|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ +|......++.+|..|...... ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 34567888889999999999886655433221 122335667766644 4666666667777666533221 111
Q ss_pred HcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcc
Q 003348 624 NANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 624 ~~g~l~~Lv~lL~--s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~ 698 (828)
....+..+.+-.. +-....|..+..+|..|..+ +...+.. .+++..+++++..+ +|+....+...+..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 0112222222111 11245677777777776543 2333322 36788888888765 8999988888888776643
Q ss_pred hhHHHHHHhCcHHHHHHhc--------CC---Ch-HH-HHH-HHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHH
Q 003348 699 ENKARIVQAGAVKHLVDLM--------DP---AA-GM-VDK-AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARG 764 (828)
Q Consensus 699 ~n~~~iv~~G~V~~Ll~LL--------~~---~~-~v-~~~-Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ 764 (828)
+. ...++.|.+.+ .+ ++ .+ .+. ..++...|++++.- ..-.+|.|++.|.+.++.+
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHH
Confidence 32 33344444433 11 11 12 222 23333444444322 2246899999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 003348 765 KENAAAALLQLCTNS 779 (828)
Q Consensus 765 ke~Av~~L~~L~~~~ 779 (828)
|..+..+|...+...
T Consensus 225 K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 225 KLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999998877654
No 272
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.48 E-value=56 Score=39.50 Aligned_cols=132 Identities=18% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCC
Q 003348 600 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG 679 (828)
Q Consensus 600 ~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~ 679 (828)
.+...+++.+..|-..+..-. .-.|.+..|++-..+.+..+|.+.+.+|.-++....-...-+-.+.+..|..-|.+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 344555555544432221111 223566777777778889999999999988875222222333446677777778888
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh
Q 003348 680 TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
.+.++..|+.||..+=.++.+ =+..++..+..++ +++.+++..|+ .|++-.+..
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsT 194 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNST 194 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCCcHHHHHHHH---HhhccCccc
Confidence 899999999999888532211 1234566777777 67777777654 444444333
No 273
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=80.73 E-value=9.8 Score=40.73 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHchhcchhHHHHHHhC--cHHHHHHhc-CC----ChHHHHHHHHHHHHHhCCc-hhHH-HHHhCCc
Q 003348 679 GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLM-DP----AAGMVDKAVAVLANLATIP-DGRV-AIGQENG 749 (828)
Q Consensus 679 ~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G--~V~~Ll~LL-~~----~~~v~~~Al~~LanLa~~~-e~r~-~i~~~g~ 749 (828)
..+..+..+++++.|+-.+...+..+.... .+-..+..+ .. +..++..+..++.|++..- ..+. .=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 467888899999999998888887777633 233333333 33 4566677778888887511 1110 0000112
Q ss_pred HHHHHHHHc-c-CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhc-CCCHHHHHHHHHH
Q 003348 750 IPVLVEVVE-L-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQAL 813 (828)
Q Consensus 750 I~~Lv~lL~-s-~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~-~g~~r~r~kA~~l 813 (828)
+..+++.+. . .++++..+++.+|.+|+..++.........|+...+..... ...+|+++.+.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 445555332 2 68999999999999999877655555544566655555544 4468898888764
No 274
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.18 E-value=0.77 Score=50.46 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred cccccCccccccC---CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003348 239 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 239 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
.+.|.|++++|.| |++.|.|++|-...|+.|=...+-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3689999999987 9999999999999999997765577999988776543
No 275
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.30 E-value=60 Score=39.24 Aligned_cols=114 Identities=20% Similarity=0.130 Sum_probs=77.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.+++..|++...+.+..++.+++..|+.+..... .+..-+-.+....|..-|....+.|+.+|+-+|..+-.++.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 4677788888889999999999999999987432 2222233466677777777778999999999999996443221
Q ss_pred HHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhccCcchHHHH
Q 003348 622 IANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
+..++..+..++++ +++++|..|+ .+++.+......|
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCI 198 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhH
Confidence 12345566666664 5788887655 4555544433333
No 276
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.12 E-value=9.7 Score=45.07 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=61.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..+..++.+....+..+|.+|++.|-.+|+++++.-..+ +..|+++|.++++.-...+-.+|..|-..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 5678899999999999999999999999999887776665 568999999988765555555554442111
Q ss_pred HHHcCCHHHHHHhhc---CCCHHHHHHHHHHHH
Q 003348 622 IANANAIEPLIHVLQ---TGSPEARENAAATLF 651 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~---s~~~e~~~~Aa~aL~ 651 (828)
-.+.+..|+..+. +++..+|+.++..|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1244555554443 566677887776664
No 277
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=78.96 E-value=92 Score=38.73 Aligned_cols=223 Identities=15% Similarity=0.108 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH--HcCCHHH
Q 003348 554 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA--NANAIEP 630 (828)
Q Consensus 554 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k~~I~--~~g~l~~ 630 (828)
+..|..-.+|...+..++.....+...+. -+....+..+..+ .+-+...|+.++...+. ...+. ..+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 44565555666666666554333333221 1333444444333 34455666666655441 11111 2366777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhc--CCCHHHHHHHHHHHHHchhcchhHHHHHHhC
Q 003348 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAG 708 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G 708 (828)
|+++....+.++.-..+.+|+.....+.-...-.+.-+.|..+.+.. ++++.+...+-.++..|+....|.+. ...-
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHH
Confidence 88888777888888888888887776655555556677777777753 44777777777788888774444433 3345
Q ss_pred cHHHHHHhcC-CC----hHHHHHHHHHHHHHhCCchh--HHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 003348 709 AVKHLVDLMD-PA----AGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 709 ~V~~Ll~LL~-~~----~~v~~~Al~~LanLa~~~e~--r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.+|.|+..|. +. ..++.-++.+|..+...... -..+.. -+.|.+.+.+ .+++...-.+|-.+|..+...+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 7888999883 22 56777788888877663222 222322 2456666654 56888889999999999988876
Q ss_pred HhHH
Q 003348 781 RFCS 784 (828)
Q Consensus 781 ~~~~ 784 (828)
+...
T Consensus 693 eq~~ 696 (1005)
T KOG2274|consen 693 EQLL 696 (1005)
T ss_pred HHHH
Confidence 4433
No 278
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.44 E-value=1e+02 Score=37.86 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=125.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhC
Q 003348 589 ILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 667 (828)
Q Consensus 589 ~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g 667 (828)
-|..+|++........|+.-+..+ +.+.+ -...++.+++-.-+.+.+++.-.---|...+....+-.. -
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----L 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----L 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----e
Confidence 466788877666666666554444 44443 224577788888888888887666555555443222111 2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHH
Q 003348 668 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIG 745 (828)
Q Consensus 668 ~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~ 745 (828)
-|..+-+-|++.++-++..|+++|..+ |.-++..=++-++-+.. +....++..|+-++-.|=+ .++.+.++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL- 181 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL- 181 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence 366777788999999999999998775 21122111111222222 5666777766666655544 55555533
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~ 815 (828)
+..+-.+|...++.+.-.|+.+.-.+|-+. .+.+ .+-...|+.++..-+...+-.....|-
T Consensus 182 ----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 182 ----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred ----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 345666778899999999999988888653 2333 345778888888877777766655443
No 279
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.26 E-value=1e+02 Score=37.49 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=79.1
Q ss_pred hCChHHHHHh-hcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhH
Q 003348 666 SGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR 741 (828)
Q Consensus 666 ~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r 741 (828)
.++|..|+.+ ..+.+..+++.|+.+|.-++. +++. ++..+.+| +-++-++-.++.+|...|.....+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 3667777777 556689999999999987766 3333 34566677 345667777888888888765555
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH-hhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHH
Q 003348 742 VAIGQENGIPVLVEVVELGSARGKENAAAALLQL-CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 807 (828)
Q Consensus 742 ~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L-~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r 807 (828)
++| ..|-.++.....-+|..|+-++.-+ +..++..+..+ .++...+.+++.+.+..+-
T Consensus 624 eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 543 3444455566777888888777664 44444333333 2345556666655554433
No 280
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=78.05 E-value=9.7 Score=48.44 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=37.8
Q ss_pred CcccccCcccccc-CCeecCCCcchhHHHHHHHHhcCCCCCCCCC
Q 003348 238 SDFCCPLSLELMT-DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 281 (828)
Q Consensus 238 ~~f~CpI~~~lm~-dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 281 (828)
..+.|+||+++|+ -=-+.-|||.||-.|+.-|+... ..||.|.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchh
Confidence 4458999999999 66678899999999999999975 6799997
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.92 E-value=3.9 Score=42.91 Aligned_cols=120 Identities=27% Similarity=0.228 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhccC---cchHHHHHhhCChHHHHHhhcC---------------CCHHHHHHHHHHHHHchhcchhH
Q 003348 640 PEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLVDLLGN---------------GTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 640 ~e~~~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~Lv~LL~s---------------~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
..+|++|.-+|.|++.. ..+-..|. .-++..|+...-. ....-++.|+.+|+.|+..+.|.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIA-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHH-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 34677777778777752 11222221 1223333333321 12367899999999999999998
Q ss_pred HHHHHhC-------cHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH-HH-HhCCcHHHHHHHHccC
Q 003348 702 ARIVQAG-------AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV-AI-GQENGIPVLVEVVELG 760 (828)
Q Consensus 702 ~~iv~~G-------~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~-~i-~~~g~I~~Lv~lL~s~ 760 (828)
..++..+ .+..|+++| ..+.-.+|-|+.+|.+||...+... .+ .+.+.|..|+.+++..
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7776644 556666666 3556678999999999999655533 33 4577899999999753
No 282
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.66 E-value=36 Score=42.01 Aligned_cols=264 Identities=14% Similarity=0.083 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 622 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I 622 (828)
.++.....++....+.+..++.....|+.. +...+..+.....+|.+-.+..+.+..+....+..+.+++---. +..-
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t 434 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT 434 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC
Confidence 356666777766666666666666666553 22334555566667888777777777777666666555532100 1000
Q ss_pred HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH
Q 003348 623 ANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 701 (828)
Q Consensus 623 ~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~ 701 (828)
-.-.++.++..++....+++.+....+..+-. .+...........++.++.+-.....+++......+.-++....
T Consensus 435 -i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 435 -ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred -ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--
Confidence 01345666667777778888887766655433 33334444455667777777666667777777777766655333
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 702 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 702 ~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..+.+.-..+.+...+ +....+.+.|...|..++..-...- .....++.++.+...++...|...+..+..++.--+
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 2222222223333323 2233455555555555544111100 011124444444444444444444444333332111
Q ss_pred HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 781 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 816 (828)
Q Consensus 781 ~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~ 816 (828)
+.+..+-.++.+..+..+..+.+|-.++..|..
T Consensus 590 ---~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 590 ---QEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred ---cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 122223345555555555555555555554443
No 283
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.04 E-value=1.9 Score=47.03 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=41.8
Q ss_pred CeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC--CC---CCCCCcHHHHHHHHHH
Q 003348 252 PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--AH---TTLIPNYTVKALIANW 302 (828)
Q Consensus 252 PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l--~~---~~l~pN~~l~~~i~~~ 302 (828)
|=++.||||+|..|+.+.+..+...||+||.+. .. ..+..|+.+-..|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 556779999999999999888777799999984 22 4678888888888776
No 284
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=76.70 E-value=3.1 Score=47.38 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhccCcchHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHHchhc----chh----HHHHHHhCcHHH
Q 003348 642 ARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----HEN----KARIVQAGAVKH 712 (828)
Q Consensus 642 ~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~----~~n----~~~iv~~G~V~~ 712 (828)
.+..|..++.-+..++..+...+- ..+...+...|.+..-..+..|++++.|++.. -.+ ..++. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 444455555545556665544433 35566666666666667888899999998761 111 12222 222233
Q ss_pred HHHhc---C-CChHHHHHHHHHHHHHhCCch-----hHHHHHhCCcHHHHHH-HHccCCHHHHHHHHHHHHHHhhCCHH-
Q 003348 713 LVDLM---D-PAAGMVDKAVAVLANLATIPD-----GRVAIGQENGIPVLVE-VVELGSARGKENAAAALLQLCTNSSR- 781 (828)
Q Consensus 713 Ll~LL---~-~~~~v~~~Al~~LanLa~~~e-----~r~~i~~~g~I~~Lv~-lL~s~s~~~ke~Av~~L~~L~~~~~~- 781 (828)
++.+- + .+..+..+++..|.|+...-+ +-..+.+ +.+..+.. ..-.+.-++|=|||.++.||..+..-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 33322 2 345677888888888875222 1111222 22222222 22346778999999999999987541
Q ss_pred hHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 003348 782 FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSY 816 (828)
Q Consensus 782 ~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~ 816 (828)
....-...-+++.|..|+.+. +-++|-.|+.+|..
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 111112233577777777654 56777777776654
No 285
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.58 E-value=36 Score=39.15 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=78.7
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc--------cHHHHHHc----CCHHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSIN-DN--------NKSAIANA----NAIEPLIHVLQTGSPEARENAAATLF 651 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~--------~k~~I~~~----g~l~~Lv~lL~s~~~e~~~~Aa~aL~ 651 (828)
..+..|+.+|.+ +++...|+.++.-|..+ +. +-+.+... -.+|.|++..+..+.+.+.+-..+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 346677888866 66677888888777554 21 12223332 35777777777777778888888888
Q ss_pred HhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcc
Q 003348 652 SLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 652 nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~ 698 (828)
++-.+-.....+.+. ..+|.|++-|...+..++..++.+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 887644433344443 78899999999889999999999999887755
No 286
>PRK14707 hypothetical protein; Provisional
Probab=76.07 E-value=1.8e+02 Score=39.84 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=135.3
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 545 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 545 V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
|..|+.-++ .++.+-+..+......++..+ ..|..+ ...+|-.+++-+++ ++.....+|+..|...-.++.....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 444555554 345555555556556666643 455554 34556666666654 4555556677776655444443333
Q ss_pred HHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHH-hccCcchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHH-Hchhc
Q 003348 622 IANANAIEPLIHVLQT-GSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALF-NLSIY 697 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~-nLs~~ 697 (828)
-++..++...+..|.. ++...-.+++.+|.. ++.+...+..+...++ ...++-| +-.+..+...|+..|. .|..+
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~v-analNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINV-TQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHH-HHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 3344455555555544 344455555555543 4433333333322222 2222222 3345555555555444 55444
Q ss_pred chhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHH-HHhCCchhHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHH
Q 003348 698 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLA-NLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALL 773 (828)
Q Consensus 698 ~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~La-nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~Av~~L~ 773 (828)
.+-+ +-.+.-.+..+++-|+ ++..++..|...|+ -|+..++-+..+- ..++..+++-+.. .+..+...|+..|.
T Consensus 322 ~~l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 322 PELC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred Hhhh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 4443 3344455555666664 55667766666554 4666666666554 3456666666644 66677777777776
Q ss_pred HHhhCCHHhHHHHHhCCCHHHHHHhhcCCC
Q 003348 774 QLCTNSSRFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 774 ~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
.=..++.+.++.+-..|+-..|--|.+=.+
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWPd 429 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWPD 429 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCCc
Confidence 655566666666655555555555544443
No 287
>PF04641 Rtf2: Rtf2 RING-finger
Probab=76.04 E-value=2.7 Score=45.12 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=32.2
Q ss_pred CcccccCccccccCCeec-CCCcchhHHHHHHHHhcC
Q 003348 238 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG 273 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~ 273 (828)
..++|+|+++.+++||+. .-|+-|.+..|..||...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 467899999999999975 579999999999999865
No 288
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.92 E-value=1.4 Score=48.54 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=38.1
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcC
Q 003348 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 284 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 284 (828)
...+.|..-.|-||.+=.++-|-+||||+.| |+.-... ..+||+||+.+
T Consensus 298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred cccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 4456677778999999999999999999988 5544332 34599998764
No 289
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.85 E-value=15 Score=35.75 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs 613 (828)
+..+..|-+.|+++++.+|..|+..|-.+.+. .......++..+++..|+.++. ..++.|+..++..+...+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999886 3456677888899999999997 467889999999998875
No 290
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=59 Score=40.81 Aligned_cols=200 Identities=18% Similarity=0.198 Sum_probs=116.4
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--------C--CHHHHHHHHHHHHHh---h--cCCccHHHHHHcC
Q 003348 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--------S--ETKIQENAVTALLNL---S--INDNNKSAIANAN 626 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s--------~--d~~v~e~A~~aL~nL---s--~~~~~k~~I~~~g 626 (828)
.-.+.++.+...+...|..+.++|++..|...|.. + |.-+...-..+|..+ + .++.|+..+-..-
T Consensus 751 dlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvI 830 (2799)
T KOG1788|consen 751 DLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVI 830 (2799)
T ss_pred HHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeee
Confidence 35567777777777889999999988888887742 1 111222233333332 1 2333433332221
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHH--HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh--------
Q 003348 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI--GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-------- 696 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I--~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-------- 696 (828)
.-..+..+|.... |-.....+..| ...-+++.| -......-..|+..++.+-.
T Consensus 831 TsqtftsLLresg-------------llcvnler~viqlllElalevl----vppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 831 TSQTFTSLLRESG-------------LLCVNLERHVIQLLLELALEVL----VPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred eHHHHHHHHHHhc-------------cceecchHHHHHHHHHHHHHhh----CCchhhhhHHHHHHHhhcccceeeeccC
Confidence 2222333332211 11111111111 111112221 22222233345555554422
Q ss_pred ---cchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHc---cCCHHHHHHH
Q 003348 697 ---YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE---LGSARGKENA 768 (828)
Q Consensus 697 ---~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~---s~s~~~ke~A 768 (828)
....++++..+|++..|++.+ ...+.+.-+-+.+|..++. ++.+.+.....|.+..|++++. +++....-+|
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 234567889999999999965 6777788888999999998 7778887788899999999874 5777777788
Q ss_pred HHHHHHHhhC
Q 003348 769 AAALLQLCTN 778 (828)
Q Consensus 769 v~~L~~L~~~ 778 (828)
..++--||..
T Consensus 974 lkIvemLgay 983 (2799)
T KOG1788|consen 974 LKIVEMLGAY 983 (2799)
T ss_pred HHHHHHHhhc
Confidence 8888888765
No 291
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=75.11 E-value=1.8 Score=39.69 Aligned_cols=58 Identities=19% Similarity=0.472 Sum_probs=35.5
Q ss_pred CCCCCCC-cccccCccccccCCeecC-CC-----cchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 003348 232 SPVPIPS-DFCCPLSLELMTDPVIVA-SG-----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 290 (828)
Q Consensus 232 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G-----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 290 (828)
..+.-|+ .+.|||++++.+.=|.+. ++ .-||..++.+-...| ..=|.+|.|++...++
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sMIv 96 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSMIV 96 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTEE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhhEe
Confidence 4455555 579999999999999863 32 349999999999886 4479999998876654
No 292
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=1.7 Score=47.69 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.2
Q ss_pred cccccCccccccCCeecCCCcc-hhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 239 DFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
--.|=||+.=-+|=|++||-|. .|..|-+.-- -..+.||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 4679999999999999999997 7888865433 223459999998754
No 293
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.82 E-value=3 Score=39.82 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=38.5
Q ss_pred cccccCccccccC--Cee-cCCCcc------hhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC
Q 003348 239 DFCCPLSLELMTD--PVI-VASGQT------YERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 291 (828)
Q Consensus 239 ~f~CpI~~~lm~d--PV~-~~~G~t------y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 291 (828)
.+-|.||.+-..+ =|| ++||.+ ||..|+++|-+ ....+|.-|...-.....|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceEEEEeCCC
Confidence 5669999987777 666 677765 99999999964 4467999987654444444
No 294
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=74.70 E-value=2.5 Score=36.34 Aligned_cols=44 Identities=34% Similarity=0.573 Sum_probs=32.2
Q ss_pred cccCcccccc----CCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 241 CCPLSLELMT----DPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 241 ~CpI~~~lm~----dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
.||-|+-=|. =||+- -|.|.|--.||.+|+... ..||.++|+..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence 4666665441 13443 589999999999999974 56999999753
No 295
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.61 E-value=82 Score=37.77 Aligned_cols=177 Identities=19% Similarity=0.132 Sum_probs=87.6
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH----HHHcC---CHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCc
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSA----IANAN---AIEPLIHVLQTGSPEARENAAATLFSLS-VIE 657 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~----I~~~g---~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~ 657 (828)
.+-.|+.+|..-+.+-.+....-+.. .. ...+.. +...| ++..+.+.+.++..... .++.++..+. ...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 44455666655454433333333322 10 122222 33333 66667777777653221 1222222221 111
Q ss_pred chHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHHchh----cchhHHHHHHhCcHHHHHHhcC-----CChHHH
Q 003348 658 DNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLMD-----PAAGMV 724 (828)
Q Consensus 658 e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~----~~~n~~~iv~~G~V~~Ll~LL~-----~~~~v~ 724 (828)
.. ....+..+..|+++. ...++..|+.++.+|.. +.+.+...+....++.|...|. .+..-+
T Consensus 389 ~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 389 YP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred cC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 11 124467777777754 45666677777776643 2222212233445566665551 122223
Q ss_pred HHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHc---cCCHHHHHHHHHHHHHHhhCCH
Q 003348 725 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE---LGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 725 ~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~---s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
..++.+|+|+.. ...++.|..++. ..+..+|-.|+++|..++...+
T Consensus 464 ~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 464 QLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred eeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 345555555443 123555666665 2467899999999998876554
No 296
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.18 E-value=2.1e+02 Score=36.40 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~~~~~k 619 (828)
.+..+..|+..+++.+..++-.|++-+..++...+ ..+++ .+|...+.++.-. ++..--.|+.+|+.|+.-.--.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 47788999999998888999999999999999877 23333 3455555544332 3444446788888876421100
Q ss_pred HHHHHcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhccCcchH--HHHHhhCChHH-HHHhhcCCCHHHHHHHH
Q 003348 620 SAIANANAIEPLIHVLQT--------GSPEARENAAATLFSLSVIEDNK--IKIGRSGAIGP-LVDLLGNGTPRGKKDAA 688 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s--------~~~e~~~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~-Lv~LL~s~~~~~~~~Al 688 (828)
-... ...++.+++-|.- ....+|..|+-++|.++...+.. ..+.. ..... |...+-+....+++.|.
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHH
Confidence 0000 1245555555531 12458899999999887633222 11111 11222 22223345566777777
Q ss_pred HHHHHchhcchhHHHHHHhCcHHHHHHhcC-CC---hHHHHHHHHHH-HHHhCCchhHHHHHhCCcHHHHHHHHccCCHH
Q 003348 689 TALFNLSIYHENKARIVQAGAVKHLVDLMD-PA---AGMVDKAVAVL-ANLATIPDGRVAIGQENGIPVLVEVVELGSAR 763 (828)
Q Consensus 689 ~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-~~---~~v~~~Al~~L-anLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 763 (828)
.|+.....- .|-+|.=+.++. .+ -..+.++-..| ..++..+..++-+.+. .+.+.+-+=+..
T Consensus 493 AAlqE~VGR---------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~----L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 493 AALQENVGR---------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH----LLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHHhcc---------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH----HHhcccccccHH
Confidence 777643221 121211112220 00 00111111111 1122222223222221 111123345889
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHH
Q 003348 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 807 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r 807 (828)
+++.|+++|..|....+++ ...+.+++|+....+++...+
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHh
Confidence 9999999999998766532 234567777777766665433
No 297
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.02 E-value=19 Score=34.35 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=62.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCcHHHHHHHHcC---CCHHHHHHHHHHHHHhhc
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHS---SETKIQENAVTALLNLSI 614 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~GaI~~Lv~lL~s---~d~~v~e~A~~aL~nLs~ 614 (828)
+..+..|-+.|+++++.+|..|+..|-.+.+.... ....++...++..|+.++.. .++.++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999987544 66777777888889999975 478899999999988753
No 298
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=1.9e+02 Score=33.77 Aligned_cols=263 Identities=13% Similarity=0.089 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCccH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~-lL~s~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
...++..+....++++...+.-|++.|.+.+..-+......... .+..++. +.+..+.+|+-+|+.+|..+.....+.
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 35678888888889888888999999999998755444443332 3444444 444557889999999887765322222
Q ss_pred HHHHHcC---CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcch--HHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 620 SAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 620 ~~I~~~g---~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~--k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
.. ..+ +.-.+..+.++.+++++.+|......|+..... +..+.+ .+...+|+.-|.+.++.+-. |++...
T Consensus 335 ~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~ 411 (533)
T KOG2032|consen 335 DL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSEL 411 (533)
T ss_pred ch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHH
Confidence 11 122 233456677888899999988888888764332 333332 13444555556666665444 444444
Q ss_pred HchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHH---HHHHHHhC-CchhHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 003348 693 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAV---AVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENA 768 (828)
Q Consensus 693 nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al---~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 768 (828)
..|...-.+. -..+.++..++. +.. .-.++ ++. .|.. +++.-... .....-++.+.-+.+++.|
T Consensus 412 ~~c~p~l~rk--e~~~~~q~~ld~---~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aa 479 (533)
T KOG2032|consen 412 RTCYPNLVRK--ELYHLFQESLDT---DMA-RFQAFYNQWCI-QLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAA 479 (533)
T ss_pred HhcCchhHHH--HHHHHHhhhhHH---hHH-HHHHHHHHHHH-HHhhhCHHHHHHH-----HHhchhheecchHHHHHHH
Confidence 4333222211 222333322211 100 00000 000 0111 11111111 1111122333334666666
Q ss_pred HHHHHHHhhCC-HHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003348 769 AAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 769 v~~L~~L~~~~-~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~ 819 (828)
+..--++.-+- +++|..+-..-....|-.+.+...+.+++.|..+|..+..
T Consensus 480 vl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 480 VLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 65555544432 2344443333456677778888889999888888877653
No 299
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.03 E-value=24 Score=42.50 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=92.5
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHHchhcchhHHH
Q 003348 625 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKAR 703 (828)
Q Consensus 625 ~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~~~~n~~~ 703 (828)
..+++.|..-+++.+..+++.++..+-..+..-+ ...+..-++|.|-.+ +++.+..++.+++.|+..+. +.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 3567788888888889999999998888775333 333444557777666 34557899999999998886 33
Q ss_pred HHHhCcHHHHHHhc----CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCH
Q 003348 704 IVQAGAVKHLVDLM----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 762 (828)
Q Consensus 704 iv~~G~V~~Ll~LL----~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~ 762 (828)
+-...+++.+..++ ..++.++...+.+..++.....+...++...++|.++.+...+.-
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 33455666666655 356788888888888888744443666667889998888866553
No 300
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.50 E-value=8.3 Score=30.77 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=21.8
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhc------CCCCCCCCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL------GLFVCPKTRQ 282 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~------~~~~cP~t~~ 282 (828)
+.|.||.|++ .|+...+.+++.. ....||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4689999776 3555666666553 2245999975
No 301
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.47 E-value=25 Score=44.59 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=98.4
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh
Q 003348 668 AIGPLVDLLGN----GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 668 ~I~~Lv~LL~s----~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
+.|.++++.++ ++++++.+|..||+.++. ..+.+. .-.|.|+.++ .+++.++.+++..|+-|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45666777754 378999999999998855 333332 3457788887 46677778888877777652111
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 741 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 741 r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
++ +..-+.|...|+..++.+|..|+.+|.+|..++ .+.--|.+..+..++.+++++++..|....+-|
T Consensus 995 ---li-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 ---LI-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ---cc-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 11 123567778888999999999999999998764 333468899999999999999999999444433
No 302
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.47 E-value=1.7 Score=51.90 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=48.6
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHHHhc--CCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
.++.||||.....+|+.+.|-|.||+.|+-.-|.. +...||+|+.........--..-.+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 34569999999999999999999999999886553 345699998666555444444455666644
No 303
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.21 E-value=20 Score=34.91 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs 613 (828)
+..+..|.+.|.+.++.+|..|+..|-.+.+... .....++..+++..|+.++.. .++.|+..++..|...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988643 355677778999999999987 78999999999998875
No 304
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.16 E-value=31 Score=35.93 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc---CC--CHHHHHHHHHHHHHhccCcch--HHHHHhhCChHHHHH
Q 003348 602 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ---TG--SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVD 674 (828)
Q Consensus 602 ~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~---s~--~~e~~~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~ 674 (828)
..+|+..|--++.+++.|..+.++-.---|...|. +. -...|..+++++..|..+++. -..+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 35666666667788888888888753223334443 22 256888999999999886653 233445589999999
Q ss_pred hhcCCCHHHHHHHHHHHHHchhcchhHHHHH----HhCcHHHHHH----hc--CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003348 675 LLGNGTPRGKKDAATALFNLSIYHENKARIV----QAGAVKHLVD----LM--DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 675 LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv----~~G~V~~Ll~----LL--~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
.+..++.-.+..|+..+..+..++..-..+. +--+|..+++ -+ .....+...++.+--.||..+..|+.+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 9999998888888888777666555433332 2223333222 22 244567788888888888888888877
Q ss_pred Hh
Q 003348 745 GQ 746 (828)
Q Consensus 745 ~~ 746 (828)
..
T Consensus 277 ~~ 278 (315)
T COG5209 277 SS 278 (315)
T ss_pred hc
Confidence 43
No 305
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=71.62 E-value=5.9 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCCCCCcccccCccccccCCee--cCCCcchhHHHHH
Q 003348 232 SPVPIPSDFCCPLSLELMTDPVI--VASGQTYERAFIK 267 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~--~~~G~ty~r~~I~ 267 (828)
..+.+.++-.|++|+.-+.+++. -||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667888889999988887775 4999999988875
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.39 E-value=12 Score=33.66 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=55.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI 614 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~ 614 (828)
......+..+.++.+.+|..++..|+.|..... ...+-..+.+..+...|.++|+-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778888999999999999999999988654 1222223677888889999999999999999988864
No 307
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.97 E-value=54 Score=40.86 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=92.3
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 003348 667 GAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 667 g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
|.+..++... .+.+..+...|+.+|..|+..-....+-...++.+.+++-+ +....+++.++.++-.++. ..
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~ 367 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------ST 367 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cc
Confidence 3344444443 34578888888888888877333223334456777777766 4556667766666655444 11
Q ss_pred HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 745 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 745 ~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
......+.+.+.+.++++..+..+...+.......+ ..+..-.-.+.++.++....+-+..+|..|.+++..+
T Consensus 368 ~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 368 PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 112346788888999999999998777766555443 2222222245788888888777888998888765543
No 308
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.19 E-value=20 Score=37.30 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHHH
Q 003348 561 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLIH 633 (828)
Q Consensus 561 ~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-----~d~~v~e~A~~aL~nLs~~~~--~k~~I~~~g~l~~Lv~ 633 (828)
..|+..|.-++. .++.+..+.++.+--.|-.+|.. ..+.++-.++.+++.|..++. ....+.....+|.+++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 467777777777 46788888887665566666643 235577788888888877643 2344456689999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--------hCChHHHHH-hhcCCCHHHHHHHHHHHHHchhcchhHHHH
Q 003348 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARI 704 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--------~g~I~~Lv~-LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i 704 (828)
++..|+.-.+--|+.++--+-.+|..-..|.+ ...+..++. +...+..+..+.++++-..||..+..+..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 99999988888888777777666654333322 123333333 334568899999999999998888776543
No 309
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.68 E-value=5.4 Score=44.61 Aligned_cols=59 Identities=20% Similarity=0.422 Sum_probs=38.4
Q ss_pred CcccccCccccccCC---eecCCCcchhHHHHHHHHhc----CCC---CCCCCCCcCCCCCCCCcHHHHHHHH
Q 003348 238 SDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDL----GLF---VCPKTRQTLAHTTLIPNYTVKALIA 300 (828)
Q Consensus 238 ~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~----~~~---~cP~t~~~l~~~~l~pN~~l~~~i~ 300 (828)
.-|.|-||.+-..-- +.+||+|.|||+|...|+.. |.. .||.++- ...-.| -.|++++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~-g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPP-GQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCc-hHHHHHHH
Confidence 457799999765442 34899999999999999873 322 3666543 222223 36666665
No 310
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.00 E-value=18 Score=44.56 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNK 619 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~-~~~~k 619 (828)
.+.+|.|++.+.+.....+..=+..|.+.-..-|. ...+-+ ....|.|++.|+-.|..++..+..++.-+.. .+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 35789999999866555666666667666664443 222222 2678888889998999999888888865532 22111
Q ss_pred HHHHHcCCHHHHHHhhcCCC---HHHHHHHHHHHHHhcc-CcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 003348 620 SAIANANAIEPLIHVLQTGS---PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 692 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~---~e~~~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~ 692 (828)
..= -.-.+|.++.+=++.+ +.+|+.|+.+|..|.. .+...-.-....++..|...|.+...-+++.|+.+=.
T Consensus 945 t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 TEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 111 1134555655544443 7799999999999987 4444444445577888999998887788888877643
No 311
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.97 E-value=41 Score=36.78 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=95.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
+..+...+..|.+.+++....++..|+.|+.-.++...-+. ...|..++.-++.....|-..|+.++..+...-++...
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999875543332221 15677777878777788888999998887543222111
Q ss_pred HHHcCCHHHHHH-hhc---CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003348 622 IANANAIEPLIH-VLQ---TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 622 I~~~g~l~~Lv~-lL~---s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
+ .++.++. +|. ..+..+++.|-.+|..+..+-.. ..+++.|+..+++.++.++..++.+..+.
T Consensus 166 --~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 --Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred --H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 3343333 333 23456788888888877543221 23466777778888888888887776654
No 312
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.77 E-value=28 Score=33.37 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs 613 (828)
+..+..|-+.|+++++.+|..|+..|-.+.+. .......++..+++..|+.++... .+.|+..++..+...+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999886 455667788889999999998764 3448888888887765
No 313
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.24 E-value=22 Score=33.92 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=60.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~g---~~r~r~kA~~lL~~L~~~~~ 822 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+..|+.++... .+.+++++..++........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 477888889999999999999999999998865 556666667777899998763 57899999999987766543
No 314
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=67.79 E-value=1.2e+02 Score=33.98 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=35.0
Q ss_pred CcccccCcccccc--CCe--ecCCCcchhHHHHHHHHhc-CCCCCCCCC
Q 003348 238 SDFCCPLSLELMT--DPV--IVASGQTYERAFIKKWIDL-GLFVCPKTR 281 (828)
Q Consensus 238 ~~f~CpI~~~lm~--dPV--~~~~G~ty~r~~I~~~~~~-~~~~cP~t~ 281 (828)
-++.|-.|++..- +-- -+||.|.|--.|+..++.+ +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4678999998753 222 3799999999999999975 456799997
No 315
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=67.78 E-value=2e+02 Score=31.76 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=132.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-----CcHHHHHHHHcCCC-HHHHHHHHHHHHHhhcC
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-----GAINILVDMLHSSE-TKIQENAVTALLNLSIN 615 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-----GaI~~Lv~lL~s~d-~~v~e~A~~aL~nLs~~ 615 (828)
.++...|+..+...+.+.+..++....++-+..-..|...++. ..+..|+.- ..+ +++.-++...|.....+
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence 4567888899888888888888888877766555555544442 233333332 122 44444444445444555
Q ss_pred CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHH-HHhh--CChHH-HHHhhcCCCHHHHHHHHHH
Q 003348 616 DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK-IGRS--GAIGP-LVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 616 ~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~-I~~~--g~I~~-Lv~LL~s~~~~~~~~Al~a 690 (828)
+.-.+.|.+...+.........++-++..-|..+...+-... ..... +... ..++. --.|+.+++--+++.+..+
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 656667777788888888888887777777777777664322 11111 1111 23343 6677889999999999999
Q ss_pred HHHchhcchhHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 003348 691 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~----~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~ 740 (828)
|+.+-.+..|...|.. ...+..++.+| ++...++-+|..+.+....++.-
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999888887776654 46788888888 67778888999998888886644
No 316
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.54 E-value=32 Score=33.30 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~GaI~~Lv~lL~s------~d~~v~e~A~~aL~nLs 613 (828)
+..+..+.+.|+++++.+|..|+..|-.+.+. .......++..+++.-|+.++.. .+..|+...+..+...+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999884 34566778888999999999953 46889999998887765
No 317
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=66.88 E-value=3.3e+02 Score=34.86 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=121.7
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----C-cc
Q 003348 545 VRKLVED-LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----D-NN 618 (828)
Q Consensus 545 V~~Lv~~-L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~----~-~~ 618 (828)
+..|+.. +..=+..++..+++.|..|+...+++ ...+..|.|+....+.+...+.-...+...+... . ..
T Consensus 545 f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~ 620 (1133)
T KOG1943|consen 545 FNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVI 620 (1133)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhh
Confidence 3344433 44557888999999999998866544 3446788888888787877665544444433211 1 00
Q ss_pred ----HHHHHHc-CCHHHHHH-hhcCCC-HHHHHHHHHHHHHhccCcc-hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 003348 619 ----KSAIANA-NAIEPLIH-VLQTGS-PEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 690 (828)
Q Consensus 619 ----k~~I~~~-g~l~~Lv~-lL~s~~-~e~~~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~a 690 (828)
...|..- ..++++.. .+..|- .-.+......+-.++..+. ....++..+....+.+.+...+ .++..|.++
T Consensus 621 ~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~a 699 (1133)
T KOG1943|consen 621 KGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSA 699 (1133)
T ss_pred hhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHH
Confidence 1111110 12333332 233331 3344445555555544322 1222223333334444443334 677777778
Q ss_pred HHHchhcchhHHHHHHhCcHHHHHHhc-CC-ChHHHHHHHHHHHHHhC---CchhHHHHHhCCcHHHHHHHHccC-CHHH
Q 003348 691 LFNLSIYHENKARIVQAGAVKHLVDLM-DP-AAGMVDKAVAVLANLAT---IPDGRVAIGQENGIPVLVEVVELG-SARG 764 (828)
Q Consensus 691 L~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~-~~~v~~~Al~~LanLa~---~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ 764 (828)
+..++..--.....-+...+...+.-+ +. +..++.-...++.++.. +-..++.+ ...+++...+. .+..
T Consensus 700 v~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~a 774 (1133)
T KOG1943|consen 700 VSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEA 774 (1133)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHH
Confidence 877765110000000012223333333 22 22233333333443332 11112222 22333333333 6677
Q ss_pred HHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC------CC--HHHHHHHHHHHHHhh
Q 003348 765 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS------GT--PRAKEKAQALLSYFR 818 (828)
Q Consensus 765 ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~------g~--~r~r~kA~~lL~~L~ 818 (828)
+.+.+.++..+|........--.-+..+..|++-+.+ |+ .-+|+.|...+.-+.
T Consensus 775 R~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 775 RQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 8888888888776432100000001233444444443 22 347777777666543
No 318
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.33 E-value=24 Score=34.23 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=61.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhccccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQRHG 823 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~~~~~ 823 (828)
++..|.+.|.++++.++..|..+|-.+..+.+ .....+...+.+..|..++... .+++++++..++..-.....+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 57888888999999999999999999988854 4566777788999999998754 578999999998876655433
No 319
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.46 E-value=1.4e+02 Score=36.53 Aligned_cols=132 Identities=23% Similarity=0.232 Sum_probs=85.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
++=+.+-.++.+.|+-++...+.++. |+..-. ...++|..|+++ .+.++..+|..|+-+|.-....+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~GT-----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVGT-----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhcc-----CchhhHHHhhcccccccchHHHHHHHHHheeeEecC------
Confidence 45555556777778877777666653 222111 123567778877 56778999999999888765532
Q ss_pred HhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003348 664 GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
....+..|.+|..+ ++-++.-|+.+|.--|....++..+ ..|-.|. ++..-++..|+-+++.+..
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 24467778888654 8999999999998877766665432 2222233 4445566677777776543
No 320
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.96 E-value=23 Score=34.52 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=61.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~-g~~r~r~kA~~lL~~L~~~~ 821 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+..|..++.. ....+++++..++.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 477888889999999999999999999998764 55677778899999999988 67889999999988766544
No 321
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.01 E-value=1.2e+02 Score=36.73 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=145.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 003348 546 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 625 (828)
Q Consensus 546 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~ 625 (828)
-.+++.++..+.+.+..--..|.. .-+..-..++..-..|.|+..+...+ .....+..|..+...-.... ...
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~ 329 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQV 329 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--ccc
Confidence 344555555555555443333332 22223334555567777877776555 22334444444432211111 566
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHH
Q 003348 626 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 705 (828)
Q Consensus 626 g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv 705 (828)
+.++.|+++++..+..+|..-+.-+-.. .+.....+.+..++|.+..-+.+.++.++..++.++..|+.-=.-+ -+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 8899999999999887775544333322 1223455667788999999999999999999999888775511110 12
Q ss_pred HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCc-HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhH
Q 003348 706 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 783 (828)
Q Consensus 706 ~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~-I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~ 783 (828)
....+..+..+- ++...++....-+|..++.+-. +....++ +..+..-+++.-...|..++.+++..+..-+.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~-- 480 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ-- 480 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch--
Confidence 333333333332 3444555555555555554321 1123333 44455556667677888888888887765442
Q ss_pred HHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 784 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 784 ~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
.-+...+++.|+-+.-+.+.-+|..|-..++.+
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 112234667777776666666676666655533
No 322
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=63.57 E-value=1.8e+02 Score=30.59 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CC---------C---------hHHHHHHHHHHHHHhCCchh
Q 003348 680 TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP---------A---------AGMVDKAVAVLANLATIPDG 740 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~---------~---------~~v~~~Al~~LanLa~~~e~ 740 (828)
+..-...++..+..|...++....+.+.+.++.+.+.| .. + ..+...-...++.|+.++.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 35667788888888888888777777888888888876 11 0 12334456788999999999
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 741 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 741 r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
.+.+-+.+....+..++...+. ......+|.+|=...+.... ..|-+.+.+++..+|..|...|+.+-
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999976533 22222233333222121112 23556788899999999999888764
No 323
>PLN02189 cellulose synthase
Probab=63.48 E-value=4.9 Score=50.36 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred ccccCccc-----cccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 240 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
-.|+||++ .+-+|-+. .||.-.||.|.+-=-++|+..||.|+.++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999996 45567765 489999999996666778888999998876
No 324
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.33 E-value=1.8 Score=46.14 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.9
Q ss_pred cccccCccccccCCeecCCCcch-hHHHHHHHHhcCC--CCCCCCCCcC
Q 003348 239 DFCCPLSLELMTDPVIVASGQTY-ERAFIKKWIDLGL--FVCPKTRQTL 284 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty-~r~~I~~~~~~~~--~~cP~t~~~l 284 (828)
+..|.||.+..+|=|.++|||.. |-.| |. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 78899999999999999999963 4444 32 2599998753
No 325
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.04 E-value=52 Score=39.75 Aligned_cols=162 Identities=19% Similarity=0.142 Sum_probs=84.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHHchh----c
Q 003348 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSI----Y 697 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~----~ 697 (828)
++..+.+++.++..... .|+.+|..|.... ... ...+..+..|++.. ++.++..|+.++..|.. .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 56667777777543222 2445555554321 111 13356666666643 45677777777777754 2
Q ss_pred c------hhHHHHHHhCcHHHHHHhcC-----CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccC---CHH
Q 003348 698 H------ENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG---SAR 763 (828)
Q Consensus 698 ~------~n~~~iv~~G~V~~Ll~LL~-----~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~---s~~ 763 (828)
. ..+...+....++.|...|. .+..-...++.+|+|+.. ...++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 11122333455666666552 334455667777777653 23577777777654 678
Q ss_pred HHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCC--HHHHHHHHH
Q 003348 764 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQA 812 (828)
Q Consensus 764 ~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~--~r~r~kA~~ 812 (828)
+|-.|+++|..+....++. +.+.|+.+..+.+ ..+|-.|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHH
Confidence 8888888888876665532 2344555555542 445544443
No 326
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.00 E-value=44 Score=39.44 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=75.4
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
|.+..++..+.+.+..++...+.+|..++..-........+|.+..|.+-+-.....+|..|+.+|+.+-....+-..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 778888888899999999999999998875544444555667777887777667788999999999987543333211
Q ss_pred hhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcc
Q 003348 665 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH 698 (828)
Q Consensus 665 ~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~ 698 (828)
.....|+.++++. +.++++.| |.|+..++
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2234667777765 66777765 44555443
No 327
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.10 E-value=26 Score=43.27 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=94.7
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 662 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~--~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~ 662 (828)
..+|.|++...+.....+-+=+.+|.++-.+-. +..+.. ...+|.|++.|.-++..++..+..++.-+..-.. ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~--tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE--TL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc--cc
Confidence 688899888876555555666667766544322 233322 2578888999998898888888887765532111 11
Q ss_pred HHh--hCChHHHHHhhcCCC---HHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhcCCChH-HHHHHHH
Q 003348 663 IGR--SGAIGPLVDLLGNGT---PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAG-MVDKAVA 729 (828)
Q Consensus 663 I~~--~g~I~~Lv~LL~s~~---~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL~~~~~-v~~~Al~ 729 (828)
+-+ ...+|.++.+-.+.+ ..++..|+.+|..|.. .+.+.-.--+..++..|...|+...+ ++++|..
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 111 256777777766653 7899999999999988 55555555667888999999965444 4555654
No 328
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=62.04 E-value=5.9 Score=42.59 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=34.8
Q ss_pred cccccCcccc----ccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCC
Q 003348 239 DFCCPLSLEL----MTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 282 (828)
Q Consensus 239 ~f~CpI~~~l----m~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 282 (828)
++-||||.+- +.+|..++|||+.-..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3459999876 4567789999998888888887777 89999965
No 329
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=62.00 E-value=2.7 Score=43.44 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.2
Q ss_pred CcccccCcc-ccccCCee----cC-CCcchhHHHHHHHHhcCCCCCC--CCCCcC
Q 003348 238 SDFCCPLSL-ELMTDPVI----VA-SGQTYERAFIKKWIDLGLFVCP--KTRQTL 284 (828)
Q Consensus 238 ~~f~CpI~~-~lm~dPV~----~~-~G~ty~r~~I~~~~~~~~~~cP--~t~~~l 284 (828)
.+-.||||. +.+-.|=+ -| |=|..|-+|.-+.|..|+..|| -|+.-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 345799998 66666743 24 9999999999999999998999 665544
No 330
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.15 E-value=1.8e+02 Score=31.30 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=106.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-------ChhhHHHHHhcCcHHHHHHHHcCCC----HHHHHHHHHHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-------NMDNRMVIANCGAINILVDMLHSSE----TKIQENAVTALL 610 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-------s~~nr~~i~~~GaI~~Lv~lL~s~d----~~v~e~A~~aL~ 610 (828)
++..+.+++-+.+... ...++..|..|+.. +.++|-.+.-.+.+|.++.-++.++ .......+..|.
T Consensus 63 ~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 5667778888887653 33455556555542 2234555555567777777777666 133445566776
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHhhcCC----CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHH
Q 003348 611 NLSINDNNKSAIANANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 686 (828)
Q Consensus 611 nLs~~~~~k~~I~~~g~l~~Lv~lL~s~----~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~ 686 (828)
.++.... ...+..++.....+ ..+....++..|..-- .++. ....+..|+.+|.++.+-.+..
T Consensus 141 ~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~-----~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 141 QVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH-----EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence 6663211 12333333333322 1334444444444311 1111 2245778999999999999999
Q ss_pred HHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 003348 687 AATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 687 Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~ 736 (828)
.+..|+.|-..-+.+.. .....+.+|+++|.. +...+|+.+|.++..
T Consensus 208 ~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t--~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP-HGADLISPLLRLLQT--DLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--ccHHHHHHHHHHHHh
Confidence 99999998775554433 667789999999954 346788888877654
No 331
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=60.82 E-value=29 Score=34.22 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 003348 554 STSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLH--SSETKIQENAVTALLNLSINDNNKSAIANANAIEP 630 (828)
Q Consensus 554 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~GaI~~Lv~lL~--s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~ 630 (828)
.+..+....+...+..|--..++....+.. .|+++.++.+.. +.+..++..++.+|..=+.++..+..|. ..+++.
T Consensus 54 ~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~ 132 (157)
T PF11701_consen 54 EGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSW 132 (157)
T ss_dssp CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHH
T ss_pred cccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHH
Confidence 333345667777777776666666665554 599999999998 7788888888888854455554455554 467999
Q ss_pred HHHhhcCC-CHH-HHHHHHHHHHH
Q 003348 631 LIHVLQTG-SPE-ARENAAATLFS 652 (828)
Q Consensus 631 Lv~lL~s~-~~e-~~~~Aa~aL~n 652 (828)
|-+.++.+ +.. ++..|+-.|.-
T Consensus 133 L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 133 LKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHhc
Confidence 99999654 455 67777776653
No 332
>PRK14707 hypothetical protein; Provisional
Probab=60.77 E-value=6.3e+02 Score=35.13 Aligned_cols=269 Identities=16% Similarity=0.169 Sum_probs=138.7
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHH-hhcCCcc
Q 003348 544 QVRKLVEDLK--STSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLN-LSINDNN 618 (828)
Q Consensus 544 ~V~~Lv~~L~--s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~GaI~~Lv~lL-~s~d~~v~e~A~~aL~n-Ls~~~~~ 618 (828)
.|..++.-+. -++++-+ +|+..|. .|+. ...-+..+ +...|-..++.| +..+..+..+|+.+|.. ++.+..-
T Consensus 206 ~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~-~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l 282 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCG-NAVSALAERLAD-ESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGL 282 (2710)
T ss_pred HHHHHHHHHhcCCCChhHH-HHHHHHHHHHcC-cHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH
Confidence 3444444444 3454443 4555554 4444 33333333 333444444544 44677677777777654 4433322
Q ss_pred HHHHHHcCCHHHHHHhhcC-CCHHHHHHHHH-HHHHhccCcchHHHHHhhCChHHHHHhhcC-C-CHHHHHHHHHHHHHc
Q 003348 619 KSAIANANAIEPLIHVLQT-GSPEARENAAA-TLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-G-TPRGKKDAATALFNL 694 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s-~~~e~~~~Aa~-aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-~-~~~~~~~Al~aL~nL 694 (828)
+..+ ..-.+...+.-|+. ++..+-..|+. +-..|..+.+.+..+-..+ +..+++-|.. . +..+.+.|...-..|
T Consensus 283 ~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 283 RKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 2222 22223333443433 33334333333 3334554444443332222 3333344432 3 344444444444466
Q ss_pred hhcchhHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHH-HhCCchhHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHH
Q 003348 695 SIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLAN-LATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAA 770 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL~--~~~~v~~~Al~~Lan-La~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~Av~ 770 (828)
+.+.+-+.-+ +...|..+++-|+ ++...+..|...|+. +...++-+..+-- .+|..+++-|. =.+..+...|+.
T Consensus 361 ~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 361 VADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred ccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHH
Confidence 6665554443 4445555666663 666777777777655 4556666666644 44555555554 378888888888
Q ss_pred HHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 003348 771 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 771 ~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g-~~r~r~kA~~lL~~L~~ 819 (828)
.|..-..++.+.++.+--.++...|--+.+=. ++..+..|..+...|..
T Consensus 439 ~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~ 488 (2710)
T PRK14707 439 ALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH 488 (2710)
T ss_pred HHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc
Confidence 88887777777776664445555554454433 44555555555555544
No 333
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=60.73 E-value=19 Score=34.29 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=41.8
Q ss_pred CCcccccCccccccCCeec----CCCcchhHHHHHHHHhc--CCCCCCCCCCcCCCC
Q 003348 237 PSDFCCPLSLELMTDPVIV----ASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~----~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~ 287 (828)
|.-+.|-||.+.-.|+--+ .||...|-.|--.-|+- -++.||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4668899999999999875 48999999999887764 356799998877654
No 334
>PLN02195 cellulose synthase A
Probab=60.52 E-value=5.7 Score=49.50 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=37.6
Q ss_pred cccCccc-----cccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 241 CCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 241 ~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.|.||++ .+-+|-+. .||.-.||.|.+-=-++|+..||+|+.+...
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 5999987 56688775 5999999999955556788889999999884
No 335
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.87 E-value=70 Score=31.76 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=65.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhh--CChHHHHHhhcCC-CHHHHHHHHHHHHHchhc----ch
Q 003348 627 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNG-TPRGKKDAATALFNLSIY----HE 699 (828)
Q Consensus 627 ~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~----~~ 699 (828)
.+..+..+|++.+.+.+-.++..+........ ...+.+. ..+..|+.+|+.. ...+++.|+.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34556778888888777776666665543322 2333232 5678888999876 567788888888887663 33
Q ss_pred hHHHHHH---hCcHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 003348 700 NKARIVQ---AGAVKHLVDLMDPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 700 n~~~iv~---~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~ 736 (828)
...++.. .+.++.++.+++. ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 3333332 2345555555542 3455666666666554
No 336
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=59.56 E-value=7.6 Score=35.13 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=23.7
Q ss_pred CCCcchhHHHHHHHHhcCCCCCCCCCCc
Q 003348 256 ASGQTYERAFIKKWIDLGLFVCPKTRQT 283 (828)
Q Consensus 256 ~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 283 (828)
.|.|.|---||.+|++.. ..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 589999999999999976 569999765
No 337
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=59.44 E-value=8.7 Score=42.03 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=44.0
Q ss_pred CCCcccccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHHHHHH
Q 003348 236 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~i~~~ 302 (828)
..+-|-||||.+.|.-|+.= .-||.-|-.|=.+ -...||.|+.++... -++++...++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~~---R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGNI---RCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccccH---HHHHHHHHHHhc
Confidence 45668899999999999763 5699999888432 235699999988842 456666665543
No 338
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=1.4e+02 Score=34.74 Aligned_cols=149 Identities=15% Similarity=0.043 Sum_probs=89.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcchHHHHHh-hCChHHH
Q 003348 595 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPL 672 (828)
Q Consensus 595 ~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~-~~e~~~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~L 672 (828)
.+++..++..|+..|.|.+..-..+..-...-.+..++.-|-.+ +.++...++.+|.-+...-.++....- ..+--.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 34677888999999999976633333333334566666655444 578888888888766543222222111 1334456
Q ss_pred HHhhcCCCHHHHHHHHHHHHHchhcchhHHHH--HH---hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHH
Q 003348 673 VDLLGNGTPRGKKDAATALFNLSIYHENKARI--VQ---AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI 744 (828)
Q Consensus 673 v~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~i--v~---~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i 744 (828)
..+..+.+++.+.+|..++..|+......+++ .+ .+..+.++.+=+++ ..+-.|+......|.-.-++++.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHHHHHHHHHHHhcCchhHHHHH
Confidence 77778889999999999999998854444433 32 23333333322444 34556777777666654555544
No 339
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.50 E-value=2.5e+02 Score=34.64 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=48.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI 656 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~ 656 (828)
..+.|=++|.+...-+..+|+.++.+|... +-..+. .++..|--+|+++....|-.|..+|..++..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 455555666677888889999998888432 111111 2677777788888899999999999988764
No 340
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=58.18 E-value=2.5e+02 Score=29.58 Aligned_cols=198 Identities=16% Similarity=0.095 Sum_probs=102.1
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003348 587 INILVD-MLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 664 (828)
Q Consensus 587 I~~Lv~-lL~s~d~~v~e~A~~aL~nLs~~~-~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~ 664 (828)
++.|+. +-+..+++++...+.+|..++.++ .+... ++..|..+.+.+..+...-+...+..+-...+ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 344444 334568999999999999998776 33333 34455566666666664444444444422111 110
Q ss_pred hhCChHHHHHh--h------cCC--CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 003348 665 RSGAIGPLVDL--L------GNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP-AAGMVDKAVAVLA 732 (828)
Q Consensus 665 ~~g~I~~Lv~L--L------~s~--~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~-~~~v~~~Al~~La 732 (828)
+.+..++.. + .++ ..+.....+.++..+|...++ .....++.+..+| +. +......++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334433333 0 111 234455556677788775555 3345677777777 44 4556677888999
Q ss_pred HHhCCchhHHHHHh-CCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCC
Q 003348 733 NLATIPDGRVAIGQ-ENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 733 nLa~~~e~r~~i~~-~g~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
.||. ..+++ ......+...+.. ..+.+...-+..+..+....- ..........++..|+++..+.+
T Consensus 148 ~Lc~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 148 PLCE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 9982 33333 1234444444422 223333322222222111111 11122234456677777666654
No 341
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=57.99 E-value=6.6 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=25.8
Q ss_pred ecCCCcchhH-----HHHHHHHhc------------CCCCCCCCCCcCCCCC
Q 003348 254 IVASGQTYER-----AFIKKWIDL------------GLFVCPKTRQTLAHTT 288 (828)
Q Consensus 254 ~~~~G~ty~r-----~~I~~~~~~------------~~~~cP~t~~~l~~~~ 288 (828)
.-+|++-||| .|+-+||.. |..+||.||.++...+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 4467777755 799999974 3356999999987654
No 342
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.77 E-value=2.1e+02 Score=34.89 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH
Q 003348 555 TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH 633 (828)
Q Consensus 555 ~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~ 633 (828)
.+++.|..|--.|..|..-+-+. |. .-.|.|+..+. +++|.++.+|+-.|+.+...=++ .++ ..-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f--c~---ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~---~~d-e~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF--CS---EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT---TAD-EHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH--HH---HHHHHHHHHHhhCCCcceeccceeeccccceehhh---hhH-HHHHHHHH
Confidence 57889999988888776644322 22 35889999887 78999999999999887532111 011 12345666
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh
Q 003348 634 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 696 (828)
Q Consensus 634 lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~ 696 (828)
-|...+..++..+..++..|-... .+--.|-++.++.+|.+.+.++...|-..+..++.
T Consensus 979 rL~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 777778889999999999874321 12224888899999999988888777777666655
No 343
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.46 E-value=5.2 Score=41.84 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=30.0
Q ss_pred cCCe-ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCc
Q 003348 250 TDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 292 (828)
Q Consensus 250 ~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 292 (828)
.||. +++|+|.||-.|...-. +..||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 5665 46999999999965442 2379999999877666665
No 344
>PLN02436 cellulose synthase A
Probab=56.11 E-value=7.8 Score=48.72 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=36.9
Q ss_pred ccccCccc-----cccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 240 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
-.|.||++ ..-||-+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999985 35567775 489999999996666778888999998876
No 345
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.60 E-value=41 Score=32.59 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=58.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH-hHHHHHhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 819 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~-~~~~v~~~g~v~~L~~LL~~------g~~r~r~kA~~lL~~L~~ 819 (828)
++..|.+.|.++++.++..|..+|-.+..+.+. ....+.....+.-|+.++.. ....++.+...++..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 577888899999999999999999999988654 55677778889899999963 347899999998876554
No 346
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=55.07 E-value=48 Score=33.47 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=36.5
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCC-cHHHHHHHHHHHHH
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANWCEL 305 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~i~~~~~~ 305 (828)
-+..|.||.|.. -.||+.++ ..+ ++||.||..|...+-.+ ...|.+.|+.....
T Consensus 110 ~~~~y~C~~~~~----------r~sfdeA~-----~~~-F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHV----------KYSFDEAM-----ELG-FTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCC----------cccHHHHH-----HhC-CCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 357899999875 23666655 333 78999999987755443 45567777766544
No 347
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=54.88 E-value=1e+02 Score=28.07 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=51.3
Q ss_pred HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 003348 706 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 772 (828)
Q Consensus 706 ~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L 772 (828)
..+.+..|++.+ .+.....+.++.+|..|..++.+.+.+.+.|++..|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456677777777 3555678899999999999999999999999998877766656666665554444
No 348
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.33 E-value=1.6e+02 Score=29.15 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=67.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhc---C
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSS-ETKIQENAVTALLNLSI---N 615 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--GaI~~Lv~lL~s~-d~~v~e~A~~aL~nLs~---~ 615 (828)
...+..+..+|++.+++.+-.++..+...+..++ ...+.+. --+..|+.+|+.. .+.+.+.++.+|..|-. +
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566778888889888888888888888877442 3445343 4677888888875 45677888888877642 2
Q ss_pred -CccHHHHHHc---CCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 616 -DNNKSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSL 653 (828)
Q Consensus 616 -~~~k~~I~~~---g~l~~Lv~lL~s~~~e~~~~Aa~aL~nL 653 (828)
++....+.-. +.+..++.+++. ....+.++.+|..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 3333333322 455566666654 23344444444443
No 349
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.26 E-value=83 Score=34.54 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=78.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC
Q 003348 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG 708 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G 708 (828)
.+..|.+.+++.+..++..|..|+.++. ..+.. ...|-.+++-+++....+-+.|+.++..|..+-.+...-.-.+
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~--e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHP--ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666654332 11111 2456777788888888899999999998877444332222222
Q ss_pred cHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003348 709 AVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 775 (828)
Q Consensus 709 ~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L 775 (828)
.+..|+.-- .++.-+++.|..+|..+..+..-. .+++.|...+.+.+++++..++....+.
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 222222111 244567888888887766542211 2355666667777777777776665443
No 350
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=4.6e+02 Score=33.29 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred CcHHHHHHHHcC--------CCHHHHHHHHHHHHHhhc--C-CccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 585 GAINILVDMLHS--------SETKIQENAVTALLNLSI--N-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 653 (828)
Q Consensus 585 GaI~~Lv~lL~s--------~d~~v~e~A~~aL~nLs~--~-~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nL 653 (828)
|.++.++..|.+ .++.-.+-|+.++++|+. . +..-.-.++.=.+..++-.++++..-.|..|++++..+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 667777777762 245566778888888862 1 11222334444566677778888888999999999998
Q ss_pred ccCc-chHHHHHhhCChHHHHHhhc-CCCHHHHHHHHHHHHHchhcchhHHHHHH---hCcHHHHHHhc
Q 003348 654 SVIE-DNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQ---AGAVKHLVDLM 717 (828)
Q Consensus 654 S~~~-e~k~~I~~~g~I~~Lv~LL~-s~~~~~~~~Al~aL~nLs~~~~n~~~iv~---~G~V~~Ll~LL 717 (828)
+..+ .....+ ..++......|. +....++..|+.||..+-.+.+....-++ .+.++.|+.+.
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 8421 222222 244566666666 66778999999999998776554322233 34445555554
No 351
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=53.32 E-value=15 Score=44.15 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=43.8
Q ss_pred CCCCCcccccCccccccCCe----ecC---CCcchhHHHHHHHHhc-----CCCCCCCCCCcCCCCCCCCcHHHHHHHHH
Q 003348 234 VPIPSDFCCPLSLELMTDPV----IVA---SGQTYERAFIKKWIDL-----GLFVCPKTRQTLAHTTLIPNYTVKALIAN 301 (828)
Q Consensus 234 ~~~p~~f~CpI~~~lm~dPV----~~~---~G~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 301 (828)
...++.-.|++|..=+.+|| +.+ ||+.+|-.||..|.+. .+.+||+| +.-|..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~Ci~s 155 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EECVGS 155 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHHhhh
Confidence 34677889999999999987 345 8999999999999875 23457777 455677
Q ss_pred HHHH
Q 003348 302 WCEL 305 (828)
Q Consensus 302 ~~~~ 305 (828)
||.-
T Consensus 156 WsR~ 159 (1134)
T KOG0825|consen 156 WSRC 159 (1134)
T ss_pred hhhh
Confidence 7653
No 352
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.89 E-value=4e+02 Score=31.87 Aligned_cols=204 Identities=18% Similarity=0.151 Sum_probs=102.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH----HHhcC---cHHHHHHHHcCCCH--HHHHHHHHHHHHhh
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV----IANCG---AINILVDMLHSSET--KIQENAVTALLNLS 613 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~----i~~~G---aI~~Lv~lL~s~d~--~v~e~A~~aL~nLs 613 (828)
..+-.|++.|+.-+.+.-......+.. .. ...|.. +...| ++..+...+.+... .....++..+....
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~ 387 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Confidence 345566666665555444444444332 11 223333 33333 56666666655431 11222222222222
Q ss_pred cCCccHHHHHHcCCHHHHHHhhcCC----CHHHHHHHHHHHHHhcc----CcchHHHHHhhCChHHHHHhhcC----CCH
Q 003348 614 INDNNKSAIANANAIEPLIHVLQTG----SPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGN----GTP 681 (828)
Q Consensus 614 ~~~~~k~~I~~~g~l~~Lv~lL~s~----~~e~~~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~s----~~~ 681 (828)
..+. ...+..+..+++++ ...++..|..++.+|.. ..+..........++.|...|.. ++.
T Consensus 388 ~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 388 RYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred hcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 2221 13456666777654 34566666666665542 22211111223456666665543 355
Q ss_pred HHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC----CChHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHH
Q 003348 682 RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD----PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEV 756 (828)
Q Consensus 682 ~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~----~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~l 756 (828)
.-+..++.+|.|+... ..++.|..++. ....++..|+.+|..++. ++. .+.+.|+.+
T Consensus 461 ~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i 522 (574)
T smart00638 461 EEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPI 522 (574)
T ss_pred hheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHH
Confidence 5667788888887442 23344555552 234677889999987764 222 234556666
Q ss_pred Hcc--CCHHHHHHHHHHHHH
Q 003348 757 VEL--GSARGKENAAAALLQ 774 (828)
Q Consensus 757 L~s--~s~~~ke~Av~~L~~ 774 (828)
..+ .+.++|-.|+.+|..
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HcCCCCChHHHHHHHHHHHh
Confidence 654 455666666655544
No 353
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.81 E-value=58 Score=31.16 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHhhccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g~--~r~r~kA~~lL~~L~~~~ 821 (828)
++..|.+.|.++++.++..|..+|-.+..+.+ .....+...+.+..|..++.... +.+++++..++.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999998854 45567777888999999888753 348999988887665543
No 354
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.50 E-value=42 Score=32.34 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC-CHH---HHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS-ETK---IQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~s~-d~~---v~e~A~~aL~nLs 613 (828)
+..+..|-+.|+++++.+|..|+..|-.+.+.. +..+..++...++..|..++... ... |++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999865 45667777778999999988653 333 8888888887764
No 355
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.73 E-value=11 Score=26.98 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc
Q 003348 273 GLFVCPKTRQT 283 (828)
Q Consensus 273 ~~~~cP~t~~~ 283 (828)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44579999874
No 356
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=51.48 E-value=75 Score=28.90 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=55.8
Q ss_pred chhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 003348 537 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 609 (828)
Q Consensus 537 ~l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL 609 (828)
++...+..+..|++......+..+..++..|..+++ ++.....+.+.|++..|-++-...++..+...-.++
T Consensus 24 dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344457788899999998877788999999999999 456777888899999987777666776665554444
No 357
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.66 E-value=59 Score=32.86 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCC-CcHHHHHHHHHHHHHcC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIANWCELNN 307 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~i~~~~~~~~ 307 (828)
-+..|.||-|+.- .||+-+ +. .++.||.||.+|...+-. --..|+..|+..-+.-+
T Consensus 114 ~~~~Y~Cp~C~~r----------ytf~eA-----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 114 NNMFFFCPNCHIR----------FTFDEA-----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCEEECCCCCcE----------EeHHHH-----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 4588999998742 245432 23 358899999998774311 12457777777666544
No 358
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=50.47 E-value=4.7e+02 Score=30.52 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=96.1
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChh-hHH-HHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCcc
Q 003348 543 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMD-NRM-VIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 618 (828)
Q Consensus 543 ~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~-nr~-~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~ 618 (828)
..|..++..++.. ..+.+..|+..|..+...+.. ... ++. ..+..++..|.+ .++.....|+.+|..++.+...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4677788888755 566778899988877665421 111 121 245567777776 6788889999999988765432
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHH-HHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 619 KSAIANANAIEPLIHVLQTGSPEARENAA-ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 619 k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa-~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
+-.=...-+|..+++.-++...++...|. .++.-++.+... ..|..+..++...+...-..++..+..|...
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 21111113455555555555555444444 333334433222 2344444455444444444444444444331
Q ss_pred chhH-HHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHHH
Q 003348 698 HENK-ARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 734 (828)
Q Consensus 698 ~~n~-~~iv~~G~V~~Ll~LL~-~~~~v~~~Al~~LanL 734 (828)
-..- ..-+=..+.|.+++-.+ .+..++..|+..|..+
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 1110 11122456666666664 4455556565555443
No 359
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.62 E-value=9.8 Score=47.98 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=36.5
Q ss_pred ccccCcccc-----ccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 240 FCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
=.|.||++= .-||-+. .||.-.||.|.+-=-++|+..||+|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999863 5567775 589999999996556678888999998875
No 360
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=49.55 E-value=3.7e+02 Score=29.00 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=100.7
Q ss_pred CcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC-------Cc-cHHHHHHcCCHHHHHHhhcCCC----HHHHHHHHHHH
Q 003348 585 GAINILVDMLHSS--ETKIQENAVTALLNLSIN-------DN-NKSAIANANAIEPLIHVLQTGS----PEARENAAATL 650 (828)
Q Consensus 585 GaI~~Lv~lL~s~--d~~v~e~A~~aL~nLs~~-------~~-~k~~I~~~g~l~~Lv~lL~s~~----~e~~~~Aa~aL 650 (828)
|..+-|..++-.+ .+...+.++..|..|... +. ++-.+.-.+.+|.++.-+.+++ ......+|..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4555555555432 344557777777777532 22 3444444567888888888777 24455666777
Q ss_pred HHhccCcchHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcC-CChHHHH
Q 003348 651 FSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVD 725 (828)
Q Consensus 651 ~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~----~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~-~~~~v~~ 725 (828)
..++... ....+..++.....+ ..+....++..|+.-.. ++ .+...+..|+.+|. .-..++.
T Consensus 140 a~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 7766211 113334444433332 23444455555543211 11 23456667888884 4466788
Q ss_pred HHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 726 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 726 ~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
..+.+|..+-.+.+.+.. ...+.+..|.+++++.- -..|..+|-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 899999998886666544 33446888888887643 3345555544433
No 361
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.40 E-value=4.1e+02 Score=29.50 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=105.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcc--hHHHHHhh--CChHHHHHhhcCC-----C--------HHHHHHHHHH
Q 003348 628 IEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGRS--GAIGPLVDLLGNG-----T--------PRGKKDAATA 690 (828)
Q Consensus 628 l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e--~k~~I~~~--g~I~~Lv~LL~s~-----~--------~~~~~~Al~a 690 (828)
++.|.+.|.+........++..|.++...+. ....+... --.+.|..++... . +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888887777788888888887333 33444443 3345566666321 1 2778888886
Q ss_pred HHHchh--cchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHH-HhCCc----hhHHHHHhCCcHHHHHHHHccCC
Q 003348 691 LFNLSI--YHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLAN-LATIP----DGRVAIGQENGIPVLVEVVELGS 761 (828)
Q Consensus 691 L~nLs~--~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~Lan-La~~~----e~r~~i~~~g~I~~Lv~lL~s~s 761 (828)
+..+.. ++..+..++. .+.+..+.+-| .+..+++...+.+|.. +...+ ..+..+.+...+..|+.+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666655 4556666665 56777788877 4557788888888874 44332 33556677778999999887666
Q ss_pred H----HHHHHHHHHHHHHhhCC
Q 003348 762 A----RGKENAAAALLQLCTNS 779 (828)
Q Consensus 762 ~----~~ke~Av~~L~~L~~~~ 779 (828)
+ .+.+.+-..|..+|+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 6 89999999999999753
No 362
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.23 E-value=4.9e+02 Score=30.38 Aligned_cols=141 Identities=15% Similarity=0.077 Sum_probs=77.7
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHH-HHHHHHhCCchhHHHHH
Q 003348 669 IGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAV-AVLANLATIPDGRVAIG 745 (828)
Q Consensus 669 I~~Lv~LL~s-~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al-~~LanLa~~~e~r~~i~ 745 (828)
+..+++.|.+ .+...++.|++.|..++.+...+-.=-..=+|..+++.- +....++..|. .++..++++..-+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4566777777 577888899999999888766543322233444444443 44444443333 3334444432111
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHH--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 746 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL--QEGAVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~--~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
-|..+..++...++..--.++..+-.|+..-. .+.+. -..+.|.+++-..+..+-+|+.|+-+|-.+-
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 13344444444444443344445555554422 12221 2457788888888888888888888665543
No 363
>PF14353 CpXC: CpXC protein
Probab=49.13 E-value=13 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=32.8
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcC--CCCCCCCCCcCC
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 285 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 285 (828)
++.||-|+.-+.=.|-..-.-.-+....++-+... ..+||.||....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36799999998888765544456666666666432 246999998754
No 364
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=48.79 E-value=1.3e+02 Score=36.52 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=91.5
Q ss_pred hCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHH
Q 003348 666 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVA 743 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~ 743 (828)
..+++.|..-+++.+..++..++..+..++..-+ ...++.-++|.|..+. .....++..++.+++.+.. .-.+.+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456777777788889999999999988877544 4567778888888875 4566777888888887771 111222
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCC
Q 003348 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 803 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~ 803 (828)
+++ .+..+.+-++..++.+....+.+..++....... +.+..+.++|.++-+...+.
T Consensus 465 v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 465 VLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 222 2344444455678888888888887777655432 45666788888888888775
No 365
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.58 E-value=45 Score=40.07 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=68.7
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHHHhCCchhHHHHHh------CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH--
Q 003348 710 VKHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAIGQ------ENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-- 780 (828)
Q Consensus 710 V~~Ll~LL~~-~~~v~~~Al~~LanLa~~~e~r~~i~~------~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-- 780 (828)
...++++|++ .-.++...+.+++|+..+-.....+++ ...+..|++.+...+|-.|..|.-++..+|.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 3456677754 345556667788888764333333433 1235555556667899999999999988887653
Q ss_pred -HhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHH-Hhhccc
Q 003348 781 -RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YFRNQR 821 (828)
Q Consensus 781 -~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~-~L~~~~ 821 (828)
..+.. ++.....-+++.+..+|++|..++. +|-+++
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 22233 3445566778888999999999776 344443
No 366
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=8.5 Score=44.09 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=51.1
Q ss_pred CCCCCcccccCc-cccccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCc-CCCCCCCCcHHHHHHHHHH
Q 003348 234 VPIPSDFCCPLS-LELMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANW 302 (828)
Q Consensus 234 ~~~p~~f~CpI~-~~lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~i~~~ 302 (828)
...|+++.||+| .+.|.|-+++ .|+.+||-.||.+.+..+ .||.|+.- .....+.|+..++..+..-
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTINRI 284 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHHHH
Confidence 568999999999 8999999987 589999999999998764 35555433 3344667777776666554
No 367
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=47.48 E-value=4.6e+02 Score=29.55 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHH-hccCcchHHHH
Q 003348 587 INILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFS-LSVIEDNKIKI 663 (828)
Q Consensus 587 I~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~-s~~~e~~~~Aa~aL~n-LS~~~e~k~~I 663 (828)
|..++.=|.+ ....++..++.-|+.-+.++..+..+.+.|.+..+++.+. .++......++++++. |+.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4555555543 3556778888888887888889999999999999999984 4444344444444444 44444333443
Q ss_pred HhhCChHHHHHhhc
Q 003348 664 GRSGAIGPLVDLLG 677 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~ 677 (828)
-..+.+..++.|+.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 34466666677777
No 368
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.50 E-value=50 Score=31.83 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=58.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHhhcCC-CHH---HHHHHHHHHHHhhccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSG-TPR---AKEKAQALLSYFRNQR 821 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~LL~~g-~~r---~r~kA~~lL~~L~~~~ 821 (828)
++..|.+.|.++++.++..|+.+|-.+..+.+ .....+.....+..|..++... +.. +++++..+|.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999875 4556666677888999988765 333 8999999888766544
No 369
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.50 E-value=46 Score=41.16 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCcccccCccc-cccCCee-cCCCcchhHHHHHHHHhc
Q 003348 236 IPSDFCCPLSLE-LMTDPVI-VASGQTYERAFIKKWIDL 272 (828)
Q Consensus 236 ~p~~f~CpI~~~-lm~dPV~-~~~G~ty~r~~I~~~~~~ 272 (828)
+-..=.|-+|.. ++..|-. -+|||.|-|.||+++...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 334456888873 4455765 599999999999998653
No 370
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=45.39 E-value=71 Score=30.28 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=52.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhH-HHHHh-CCCHHHHHHhhc-----CC---CHHHHHHHHHHHHHhh
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC-SMVLQ-EGAVPPLVALSQ-----SG---TPRAKEKAQALLSYFR 818 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~-~~v~~-~g~v~~L~~LL~-----~g---~~r~r~kA~~lL~~L~ 818 (828)
++..|.+-|+..++-++.-|..+|-.||..+.... ..+.+ ...|..+...-. .| ...+|.+|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45677788888899999999999999999876433 33333 345555555544 23 2579999999999987
Q ss_pred cc
Q 003348 819 NQ 820 (828)
Q Consensus 819 ~~ 820 (828)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 64
No 371
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.90 E-value=1.5e+02 Score=29.30 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=75.3
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 543 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 543 ~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
.....|++.|+.+ ++.+++++++.|..|..-++.....+....- .-. -...+..... ..+.+.... .....
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~---~~l~~~~~~-~~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTD---ISLPMMGIS-PSSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchh---hHHhhccCC-CchHH
Confidence 4577888888854 6889999999999987777654443322110 000 0000111111 111111111 12333
Q ss_pred HHHcCCHHHHHHhhcCCCHH-HHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003348 622 IANANAIEPLIHVLQTGSPE-ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e-~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
..-..++..|+++|+..+.. -...++.++.++-.....+..-.-..++|.++..+++.+...++.-..-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445678888888877633 33345555555433222222111236788888888876666666555444443
No 372
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=44.82 E-value=13 Score=46.89 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.9
Q ss_pred ccccCccc-----cccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 240 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
-.|.||++ ..-||-+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35999985 35667775 589999999996666778888999998876
No 373
>PRK10869 recombination and repair protein; Provisional
Probab=44.71 E-value=6.3e+02 Score=30.33 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhh-H--HHHHHHHHH
Q 003348 30 VKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQV-E--SLMSKIRTS 106 (828)
Q Consensus 30 ~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~-~--~i~~~f~~~ 106 (828)
++++..+..+++.+|.--++||...+.... -..-|++-+..|..+..+.+.+. ..|-++.+ + .+...+..+
T Consensus 176 l~~~~~~~~~~~d~l~fql~Ei~~~~l~~g--E~eeL~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~l~~~ 249 (553)
T PRK10869 176 HQQQSQERAARKQLLQYQLKELNEFAPQPG--EFEQIDEEYKRLANSGQLLTTSQ----NALQLLADGEEVNILSQLYSA 249 (553)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhCCCCCC--cHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCcccHHHHHHHH
Confidence 355677888999999999999998774222 24556666667777777776543 33333443 2 444444444
Q ss_pred HHHHHH
Q 003348 107 GLDIML 112 (828)
Q Consensus 107 ~~~l~~ 112 (828)
...+..
T Consensus 250 ~~~l~~ 255 (553)
T PRK10869 250 KQLLSE 255 (553)
T ss_pred HHHHHH
Confidence 444444
No 374
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=44.50 E-value=16 Score=46.29 Aligned_cols=45 Identities=33% Similarity=0.630 Sum_probs=31.7
Q ss_pred CCCCcccccCcc--ccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC-CCCC
Q 003348 235 PIPSDFCCPLSL--ELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIP 291 (828)
Q Consensus 235 ~~p~~f~CpI~~--~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~p 291 (828)
++|+++.||=|+ +++.|+ .+.+| ||- -..+||+|+.|+..+ +=+|
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fDL---------pdK~CPkCg~pl~kDG~dIP 957 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FDL---------PDKDCPKCGTPLKKDGHDIP 957 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CCC---------CCCCCCcCCCccccCCCCCC
Confidence 579999999998 777777 33344 332 346799999998654 4445
No 375
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=44.32 E-value=30 Score=33.71 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCcccccCccccccCCeecCCCcchhHHHHHHHHh-cCCCCCCCCCCcCCCC
Q 003348 237 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWID-LGLFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~-~~~~~cP~t~~~l~~~ 287 (828)
...|.||-|+ ++|.-.-...... .+..+||.||.+|...
T Consensus 97 ~~~Y~Cp~C~------------~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQ------------SKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCC------------CEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 5689999654 4554322222221 2346799999988653
No 376
>PHA02862 5L protein; Provisional
Probab=43.79 E-value=22 Score=34.40 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=32.7
Q ss_pred cccCccccccCCeecCCCc-----chhHHHHHHHHhc-CCCCCCCCCCcCCCC
Q 003348 241 CCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAHT 287 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~~ 287 (828)
.|=||.+-=.|. +-||+. -.-++|+++|+.. ++.+||.|+.++..+
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 477888765444 456543 2679999999975 445699999987653
No 377
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=43.61 E-value=10 Score=40.79 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=20.0
Q ss_pred cccccCcccccc--C-CeecCCCcchhHHH
Q 003348 239 DFCCPLSLELMT--D-PVIVASGQTYERAF 265 (828)
Q Consensus 239 ~f~CpI~~~lm~--d-PV~~~~G~ty~r~~ 265 (828)
.|.||+|+.-|. + .+.-+.||+||.+-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 389999999885 2 23446799998764
No 378
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.49 E-value=1.9e+02 Score=34.53 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=65.3
Q ss_pred hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHH
Q 003348 707 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 785 (828)
Q Consensus 707 ~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~ 785 (828)
+|.+..+++-+ .++..++..++.+|+.+..+-.-.....-.+.+..|.+.+-...+.+|..|+.+|..+-.....-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--- 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--- 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh---
Confidence 45555566655 46678888999999988875444444444566778877777788899999999987765332210
Q ss_pred HHhCCCHHHHHHhhcCC-CHHHHHHHHH
Q 003348 786 VLQEGAVPPLVALSQSG-TPRAKEKAQA 812 (828)
Q Consensus 786 v~~~g~v~~L~~LL~~g-~~r~r~kA~~ 812 (828)
+...+..|+.+++++ ++.+|+.|..
T Consensus 167 --en~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 167 --ENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112334566666665 4567766543
No 379
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=43.24 E-value=5.7e+02 Score=29.41 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhh-cCCccHHH-HHHcCCH
Q 003348 556 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAVTALLNLS-INDNNKSA-IANANAI 628 (828)
Q Consensus 556 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-----d~~v~e~A~~aL~nLs-~~~~~k~~-I~~~g~l 628 (828)
+.++-.+|+++|.++.++++..|....+......++.++... -..++..=+..|.-|+ .....+.. +++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 346778999999999999999999988887777777766432 1123334444444443 23344444 5677899
Q ss_pred HHHHHhhcC
Q 003348 629 EPLIHVLQT 637 (828)
Q Consensus 629 ~~Lv~lL~s 637 (828)
+.+...|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999888864
No 380
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=42.70 E-value=13 Score=36.86 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 288 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 288 (828)
-+..|.||-|+.= .||+-+ +. .+++||.||.+|...+
T Consensus 106 ~~~~Y~Cp~c~~r----------~tf~eA-----~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 106 NNMFFICPNMCVR----------FTFNEA-----ME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCCeEECCCCCcE----------eeHHHH-----HH-cCCcCCCCCCEeeecc
Confidence 4688999987631 233322 22 2588999999987644
No 381
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.33 E-value=75 Score=38.39 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=102.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 621 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~ 621 (828)
..+++.|++++++.+..+|..-+..+-.+... --..+.+.-.+|.+..-+.+.++.++++++..+..|+--- ++.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL-~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL-SKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh-chh-
Confidence 34778888888887777666555555444332 1223445567888888777888888888888887774211 111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhC-ChHHHHHhhcCCCHHHHHHHHHHHHHchhcchh
Q 003348 622 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG-AIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 700 (828)
Q Consensus 622 I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g-~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n 700 (828)
......+..+-++-......++-+..-+|..++.+..... ..+ .+.+...-+++.-...+..+..++.....+-+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 1111222223222222334556666655555544322111 222 223344456666677888888888877665544
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 003348 701 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 733 (828)
Q Consensus 701 ~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~Lan 733 (828)
.. +...+++.+..+. +++..++..|..++..
T Consensus 481 ~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 481 SE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hh--hhhhccccccccccCcccchhhHHHHHHHH
Confidence 33 4455666666665 6666666666555443
No 382
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=41.14 E-value=2.5 Score=35.73 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=22.9
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
+..||.|+..| .-..|+.+|-.|-..+... ..||.|+++|..
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred CCcCCCCCCcc----EEeCCEEECccccccceec--ccCCCcccHHHH
Confidence 46799999853 3345788888886654433 359999998753
No 383
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.08 E-value=4.6e+02 Score=32.47 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=67.7
Q ss_pred hCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHH
Q 003348 666 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVA 743 (828)
Q Consensus 666 ~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~ 743 (828)
..+|..|..+-.+.-..++..|+.++++|..+..-.. ..++..|+.-| ++...+...|...|.+|.. ||..+..
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3567777777777778999999999999988655432 33455566666 6777788888777776654 7776655
Q ss_pred HHhCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHh
Q 003348 744 IGQENGIPVLVEVVE--LGSARGKENAAAALLQLC 776 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~--s~s~~~ke~Av~~L~~L~ 776 (828)
|++ .+..++- +.+.+.+.+|+..|-++.
T Consensus 379 vi~-----EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VID-----EIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHH-----HHHHHHcccCccccceeehhhhhhhhH
Confidence 443 3333332 245666666666665544
No 384
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.84 E-value=19 Score=25.96 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=7.5
Q ss_pred CCCCCCCCCc
Q 003348 274 LFVCPKTRQT 283 (828)
Q Consensus 274 ~~~cP~t~~~ 283 (828)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 385
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=40.63 E-value=4.6e+02 Score=27.55 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=79.3
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 003348 551 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 630 (828)
Q Consensus 551 ~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~ 630 (828)
.-+..+++.+...+..|..++.++..+.. -++..|..+...+.......+...+..+-... ++.. +.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f----~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF----PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH----HHHHH
Confidence 33466888999999999999996611111 23556666666666666555666665553221 1111 34444
Q ss_pred HHHh--h------cCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHHch
Q 003348 631 LIHV--L------QTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLS 695 (828)
Q Consensus 631 Lv~l--L------~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-~s~~~~~~~~Al~aL~nLs 695 (828)
++.. + ..+ ..+.....+.++..++....+ -....++.+..+| ++.++..+..|+.+|..||
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4433 1 111 234445556677777654433 1124577777788 7778889999999999998
No 386
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.41 E-value=22 Score=28.61 Aligned_cols=32 Identities=28% Similarity=0.647 Sum_probs=26.0
Q ss_pred cccccCccccc--cCCeec--CCCcchhHHHHHHHHhcC
Q 003348 239 DFCCPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLG 273 (828)
Q Consensus 239 ~f~CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~~~~~ 273 (828)
.-.|++|++-+ .|.+++ .||-.|=|.| |-..|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEKAG 40 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH---HhhCC
Confidence 34699999999 788886 5999999999 65544
No 387
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.36 E-value=3.1e+02 Score=33.09 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=67.7
Q ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHhhc----CC------ccHHHHHHcCCHHHHHHhhc----CCCHHHHHHHHH
Q 003348 587 INILVDMLHS----SETKIQENAVTALLNLSI----ND------NNKSAIANANAIEPLIHVLQ----TGSPEARENAAA 648 (828)
Q Consensus 587 I~~Lv~lL~s----~d~~v~e~A~~aL~nLs~----~~------~~k~~I~~~g~l~~Lv~lL~----s~~~e~~~~Aa~ 648 (828)
+..+..++.+ .++.+...|+-++..|.. .. ...........++.|...|. .++.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555543 345566666666666632 21 01111222345555555554 445667777888
Q ss_pred HHHHhccCcchHHHHHhhCChHHHHHhhcCC---CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc-C--CChH
Q 003348 649 TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAG 722 (828)
Q Consensus 649 aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~---~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL-~--~~~~ 722 (828)
+|.|+- ....++.|..++... +..++..|+.||..+......+ +.+.|+.++ + .+.+
T Consensus 513 aLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HH
T ss_pred HhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChh
Confidence 888773 235788888888766 6788889999998775433221 234566665 2 3344
Q ss_pred HHHHHHHH
Q 003348 723 MVDKAVAV 730 (828)
Q Consensus 723 v~~~Al~~ 730 (828)
++-.|+.+
T Consensus 576 vRiaA~~~ 583 (618)
T PF01347_consen 576 VRIAAYLI 583 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 388
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=39.64 E-value=31 Score=33.96 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred CcccccCccccccCCeecCCCc-----chhHHHHHHHHhcC-CCCCCCCCCcCCC
Q 003348 238 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDLG-LFVCPKTRQTLAH 286 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 286 (828)
.+-.|=||.+=.. +..-||.. ..=++|+++|+..+ ...||.|++++..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4456889987643 44456643 24799999999864 4569999988754
No 389
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.47 E-value=5.6e+02 Score=31.47 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc--Ccc----hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHH
Q 003348 629 EPLIHVLQTGSPEARENAAATLFSLSV--IED----NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 702 (828)
Q Consensus 629 ~~Lv~lL~s~~~e~~~~Aa~aL~nLS~--~~e----~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~ 702 (828)
|.|.+-|+-.+.+++.+|+..++++-. +++ .+..+.+. -+..|.+||.++-+.++-.|..-+..... --+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 345566778889999999999998754 222 23444443 36789999999988888877665444322 123
Q ss_pred HHHHhCcHHHHHHh-c-----CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 003348 703 RIVQAGAVKHLVDL-M-----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 776 (828)
Q Consensus 703 ~iv~~G~V~~Ll~L-L-----~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~ 776 (828)
.++=...+..|+.- . +...+++-....-|-.++.++..-..+- -++|.|-..|...+.++|-.++-+|..+-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33333333333332 2 2334455555555666666655443332 24566667778889999999998888765
Q ss_pred hC
Q 003348 777 TN 778 (828)
Q Consensus 777 ~~ 778 (828)
..
T Consensus 331 ~v 332 (1005)
T KOG1949|consen 331 AV 332 (1005)
T ss_pred hh
Confidence 43
No 390
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=37 Score=38.71 Aligned_cols=67 Identities=13% Similarity=0.302 Sum_probs=41.1
Q ss_pred cccccCcc-ccccCCe---ecCCCcchhHHHHHHHHhc-----CCCCCCCCCCc--CCCC---CCCCcHHHHHHHHHHHH
Q 003348 239 DFCCPLSL-ELMTDPV---IVASGQTYERAFIKKWIDL-----GLFVCPKTRQT--LAHT---TLIPNYTVKALIANWCE 304 (828)
Q Consensus 239 ~f~CpI~~-~lm~dPV---~~~~G~ty~r~~I~~~~~~-----~~~~cP~t~~~--l~~~---~l~pN~~l~~~i~~~~~ 304 (828)
...|+||. +.+...- +..|||-||..|..+|+.. ....||.-+-+ ++.. .+.|+ .++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 46799999 4433322 5679999999999999983 22347654433 4332 44444 55555555554
Q ss_pred Hc
Q 003348 305 LN 306 (828)
Q Consensus 305 ~~ 306 (828)
+.
T Consensus 225 e~ 226 (384)
T KOG1812|consen 225 EE 226 (384)
T ss_pred HH
Confidence 43
No 391
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.31 E-value=1.1e+02 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.2
Q ss_pred cccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCc
Q 003348 239 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQT 283 (828)
Q Consensus 239 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 283 (828)
.+.||+|+-++.+. .+..||.|+.|
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 78899985544431 34569999876
No 392
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.04 E-value=1.2e+02 Score=33.76 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhhC--ChHHHHHhhcCC---CHHHHHHHHHHHHHchhcchhHHHHHH-------hC
Q 003348 641 EARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKARIVQ-------AG 708 (828)
Q Consensus 641 e~~~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~s~---~~~~~~~Al~aL~nLs~~~~n~~~iv~-------~G 708 (828)
.+|..|.++|..+.........+...+ ++..|+++++.+ ...++..|+.+|..|+....-...++. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 355666777766666666666666654 999999999875 468999999999999885543333332 45
Q ss_pred cHHHHHH
Q 003348 709 AVKHLVD 715 (828)
Q Consensus 709 ~V~~Ll~ 715 (828)
++..+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555544
No 393
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.79 E-value=2.8e+02 Score=28.00 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=73.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhC------cHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cc
Q 003348 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLM-DPAAGMVDKAVAVLANLAT-IP 738 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G------~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~ 738 (828)
..++.++++..+.+..++..|+..|.-+ ++.| ++|.|+.|. +++..+...|...+..+.. ++
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~i----------l~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELI----------LRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH----------HhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3467788888888889999998887654 4444 678888887 7888999999999999987 33
Q ss_pred hhHHHHHhCCcHHHHHHHHcc--CCHH--H---HHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC
Q 003348 739 DGRVAIGQENGIPVLVEVVEL--GSAR--G---KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 801 (828)
Q Consensus 739 e~r~~i~~~g~I~~Lv~lL~s--~s~~--~---ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~ 801 (828)
.--..=.. .|+..-.++-+. ++.. . ...-..-|+.++..+...+..+ +..|++.+..
T Consensus 78 s~v~~~~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 78 SLVESRYS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 22221111 234433333321 1111 1 4555666677777555555554 4444444443
No 394
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=37.69 E-value=4.6e+02 Score=30.08 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=94.7
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--C---------CChHHHHHHHHHHHHHhCC
Q 003348 670 GPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--D---------PAAGMVDKAVAVLANLATI 737 (828)
Q Consensus 670 ~~Lv~LL~s~~-~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~---------~~~~v~~~Al~~LanLa~~ 737 (828)
..++.+|.++- ...+..++.++.-|+.+...-.-+.....+..|+.+- + ++..++.+++..|.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45666676664 5566677788888888766554445555555665552 1 2346788999999999994
Q ss_pred -chhHHHHHhCCcHHHHHHHHccC-----CHHHHHHHHHHHHHHhhCCHHhHH-HHHhCCCHHHHHHhhcCC--------
Q 003348 738 -PDGRVAIGQENGIPVLVEVVELG-----SARGKENAAAALLQLCTNSSRFCS-MVLQEGAVPPLVALSQSG-------- 802 (828)
Q Consensus 738 -~e~r~~i~~~g~I~~Lv~lL~s~-----s~~~ke~Av~~L~~L~~~~~~~~~-~v~~~g~v~~L~~LL~~g-------- 802 (828)
+..+....+......+.+.+... -...+-.-...|.-|..-...++. .+.+.+|++.+..++...
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 45566677777666666665321 122333344444444444444554 455689999999888753
Q ss_pred ----CHHHHHHHHHHHHHhhc
Q 003348 803 ----TPRAKEKAQALLSYFRN 819 (828)
Q Consensus 803 ----~~r~r~kA~~lL~~L~~ 819 (828)
++.--..|.++|+.|.+
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFN 228 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 12445678888887754
No 395
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.47 E-value=5.5e+02 Score=27.59 Aligned_cols=215 Identities=14% Similarity=0.104 Sum_probs=116.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhh
Q 003348 590 LVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS 666 (828)
Q Consensus 590 Lv~lL~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~ 666 (828)
|=..|.++++.++..|+..|..+... +... ....-+..|+..+.+ .+......++.+|..|.......... ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 44567788999999999988776432 2111 111224444444322 23444444455555554322211111 01
Q ss_pred CChHHHHHhh--cCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH
Q 003348 667 GAIGPLVDLL--GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV 742 (828)
Q Consensus 667 g~I~~Lv~LL--~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~ 742 (828)
..+..+.+-. +......|..+...|..|..+.....+-...+.+..+++++ +.+++-...+..++..+...=+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---
Confidence 1222222221 12246777888888888876543333334456777888887 3567666777777776655222
Q ss_pred HHHhCCcHHHHHHHHcc----------CCH--HHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHH
Q 003348 743 AIGQENGIPVLVEVVEL----------GSA--RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 810 (828)
Q Consensus 743 ~i~~~g~I~~Lv~lL~s----------~s~--~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA 810 (828)
. ...++.+.+.+.. +++ -.++.-...|.+.-...+... .-++|.|++=|.++.+.+|.-+
T Consensus 157 --~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 157 --I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred --c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHH
Confidence 1 2334444444411 122 234444445544333333322 2468899999999999999888
Q ss_pred HHHHHHhhc
Q 003348 811 QALLSYFRN 819 (828)
Q Consensus 811 ~~lL~~L~~ 819 (828)
...|..+-.
T Consensus 229 L~tL~~c~~ 237 (262)
T PF14500_consen 229 LQTLKACIE 237 (262)
T ss_pred HHHHHHHHH
Confidence 887776544
No 396
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=37.28 E-value=2.2e+02 Score=28.18 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=77.4
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHH
Q 003348 667 GAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 745 (828)
Q Consensus 667 g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i~ 745 (828)
..++.|..+|+.+ +..+++.|+++|+.|..-+..+.+.+..+.-... --+.........+ .+....+ .-+...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~--~~~~~~~~~~~~l---~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS--SENSNDESTDISL---PMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc--cccccccchhhHH---hhccCCC-chHHHH
Confidence 4467788888876 6899999999999997755555543322111000 0011111111111 1111111 222232
Q ss_pred hCCcHHHHHHHHccCCHHH-HHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 003348 746 QENGIPVLVEVVELGSARG-KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 817 (828)
Q Consensus 746 ~~g~I~~Lv~lL~s~s~~~-ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L 817 (828)
-.-++..|+.+|++.+-.. ...++.++.++...-+..|...+ .-++|.++..++..++..++.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2335788888887755433 33466666666644332232221 34789999999988777776655444433
No 397
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.85 E-value=1.3e+02 Score=26.92 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHH
Q 003348 713 LVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 781 (828)
Q Consensus 713 Ll~LL-~~~~~v~~~Al~~LanLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~ 781 (828)
.+..+ ++...++-.++..|..|..... ..+.. .+++..+...|++.++-+--+|+..|..||...++
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34444 6778899999999999998666 22222 35577778888889999999999999999988764
No 398
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.53 E-value=1e+03 Score=30.41 Aligned_cols=191 Identities=11% Similarity=0.155 Sum_probs=101.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-CccHH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-DNNKS 620 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~-s~d~~v~e~A~~aL~nLs~~-~~~k~ 620 (828)
..+..++..+++.--..|.+||+.+..++..+-.+...+. .++....+.|. +.+-.|+..|+-||.-+-.+ +....
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 3566777788888888999999999999844322333332 35566666666 55666888999998877544 33333
Q ss_pred HHHHc--CCHHHHHHhhcCCCHHHHHHHHHHHH-Hhcc-CcchHHHHHhhCChHHHHHhhcC------CCHHHHHHHHHH
Q 003348 621 AIANA--NAIEPLIHVLQTGSPEARENAAATLF-SLSV-IEDNKIKIGRSGAIGPLVDLLGN------GTPRGKKDAATA 690 (828)
Q Consensus 621 ~I~~~--g~l~~Lv~lL~s~~~e~~~~Aa~aL~-nLS~-~~e~k~~I~~~g~I~~Lv~LL~s------~~~~~~~~Al~a 690 (828)
.+-.. +.+..|+++.+.-.-+..-+.+..+. ..+. .......+.. .......+++.. ++..-...|.++
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 33322 34444555555443333333222221 1111 0001111111 222344445542 134555666666
Q ss_pred HHHchh---cchhHHHHH---HhCcHHHHHHhcC-CChHHHHHHHHHHHHHhC
Q 003348 691 LFNLSI---YHENKARIV---QAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 691 L~nLs~---~~~n~~~iv---~~G~V~~Ll~LL~-~~~~v~~~Al~~LanLa~ 736 (828)
|..+.+ .-++...+. +.-+.+.+-.+|. .-.++-++++.++..+..
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 666654 333443333 3344455545563 345677778877777655
No 399
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.43 E-value=8.3e+02 Score=29.33 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhhH----HHHHHHHH
Q 003348 30 VKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVE----SLMSKIRT 105 (828)
Q Consensus 30 ~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~----~i~~~f~~ 105 (828)
++++-+++.+++.+|.-=++||-..++... -...|.+-+.-|..+..|.+.| ...|-++.++ .+...+..
T Consensus 176 ~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g--E~e~L~~e~~rLsn~ekl~~~~----~~a~~~L~ge~~~~~~~~~l~~ 249 (557)
T COG0497 176 LQEKERERAQRADLLQFQLEELEELNLQPG--EDEELEEERKRLSNSEKLAEAI----QNALELLSGEDDTVSALSLLGR 249 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhhHHHHHHHH----HHHHHHHhCCCCchhHHHHHHH
Confidence 466788999999999999999987764333 3667778888888888888765 3567777653 35555544
Q ss_pred HHHHHH
Q 003348 106 SGLDIM 111 (828)
Q Consensus 106 ~~~~l~ 111 (828)
....+.
T Consensus 250 a~~~l~ 255 (557)
T COG0497 250 ALEALE 255 (557)
T ss_pred HHHHHH
Confidence 444444
No 400
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=35.86 E-value=23 Score=36.38 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=35.4
Q ss_pred cccCccccccCCeec-CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 241 CCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 241 ~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.|.+|..|.-.-+.- .||..|-+.||+.++.+ ...||.|+--.++
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 599999987665543 57888999999999998 4679999754443
No 401
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=35.69 E-value=1e+02 Score=27.78 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhH
Q 003348 27 LDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRV 90 (828)
Q Consensus 27 ~~~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Skl 90 (828)
....++|=..|++++.-..|+++.|...+. +...-......-...-++|+.|+...-..|++-
T Consensus 8 ~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A 70 (94)
T cd08329 8 LSLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNAA 70 (94)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHH
Confidence 345699999999999889999999998875 333344444444445699999998765445443
No 402
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=35.52 E-value=17 Score=28.72 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=11.5
Q ss_pred CCCCcccccCccc
Q 003348 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
.+|++|.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 403
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.43 E-value=3.8e+02 Score=35.70 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhH--HHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-CchhHHH
Q 003348 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK--ARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDGRVA 743 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~--~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e~r~~ 743 (828)
+.+..++..|..+...++..|+.||.++...+... ...+..|+... +.++...+++.|+.+++.... +++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R---~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR---LNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh---hccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 66788888888888999999999999997744322 23344444433 346777889999998875433 3332222
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 003348 744 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 744 i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
....+.+-+...+-.+|.++..+|.-+|...+
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 23455556667788899999999999998765
No 404
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=34.97 E-value=1.6e+02 Score=25.20 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHH
Q 003348 29 IVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVL 94 (828)
Q Consensus 29 ~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~ 94 (828)
..+++...+++.+..+.++++.|...+.-... -..-+......-++++.||+.....|.+.|-.+
T Consensus 3 ~L~~~r~~Lv~~l~~~~~ild~L~~~~vlt~~-e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 3 LLRKNRQELVEDLDDLDDILDHLLSRGVLTEE-EYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHHTHHHHHHHSSHHHHHHHHHHHTTSSSHH-HHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHCCCCCHH-HHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 46888999999999999999999988754433 444444455567889999887765677765544
No 405
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=34.35 E-value=1e+03 Score=31.44 Aligned_cols=224 Identities=17% Similarity=0.111 Sum_probs=121.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHH-Hc------C--CCHHHHHHHHHHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDM-LH------S--SETKIQENAVTALL 610 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~--nr~~i~~~GaI~~Lv~l-L~------s--~d~~v~e~A~~aL~ 610 (828)
..++..|+..+-+.++++|.-++-.|+.+.+.... ++.. .+.-++..|.-+ |. + .-..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 46789999999999999998888888877664322 2221 121222222111 11 1 12457788888887
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHH-------HHHHhccCcchHHHHHhhCChHHHHHhhcCCCHHH
Q 003348 611 NLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA-------TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 683 (828)
Q Consensus 611 nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~-------aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~ 683 (828)
.+..+...... ...+..+..++..+..+++.-.+. +..++.. ..-.-+++..++-|.+.+..+
T Consensus 155 ~~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-------~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 155 AYLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-------QLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred HHHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhcchHH
Confidence 77554321111 123555666666554443332222 2222211 111145666677778888888
Q ss_pred HHHHHHHHHHchhcch--hHHHHHHhCcHHHHHH----hcCCChHHHHHHHHHHHHHhCCchhHHHHH----hCCcHHHH
Q 003348 684 KKDAATALFNLSIYHE--NKARIVQAGAVKHLVD----LMDPAAGMVDKAVAVLANLATIPDGRVAIG----QENGIPVL 753 (828)
Q Consensus 684 ~~~Al~aL~nLs~~~~--n~~~iv~~G~V~~Ll~----LL~~~~~v~~~Al~~LanLa~~~e~r~~i~----~~g~I~~L 753 (828)
+..|+..|.-...... ....| .-++..+.. +++ -..-.......|..+|...+...... +.|.+|.+
T Consensus 225 ~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred HHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 8888888776655331 11211 223333333 332 11112233445555666553332222 24678888
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 754 VEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 754 v~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
...+++.-..++..++..+..|...+
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888777778888888887776644
No 406
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.07 E-value=39 Score=40.21 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=13.2
Q ss_pred CCcchhHHHHHHHHhc----CCCCCCCCCCcC
Q 003348 257 SGQTYERAFIKKWIDL----GLFVCPKTRQTL 284 (828)
Q Consensus 257 ~G~ty~r~~I~~~~~~----~~~~cP~t~~~l 284 (828)
||..+.|..+.+|... ....||+|+..+
T Consensus 483 Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v 514 (567)
T PLN03086 483 CGVVLEKEQMVQHQASTCPLRLITCRFCGDMV 514 (567)
T ss_pred CCCCcchhHHHhhhhccCCCCceeCCCCCCcc
Confidence 5555555555555432 112355555444
No 407
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.00 E-value=4.2e+02 Score=28.34 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred cHHHHHHHH-----------cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHH--------HHHHH
Q 003348 586 AINILVDML-----------HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE--------ARENA 646 (828)
Q Consensus 586 aI~~Lv~lL-----------~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e--------~~~~A 646 (828)
.+|.|+.+| .+++.....+|+..| ..+.+..++++|+++++.++.. +-+..
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LL----------aq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLL----------AQFREERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHH----------HHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Q ss_pred HHHHHHhccCcchHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHHchh-cchhHHHHHH
Q 003348 647 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSI-YHENKARIVQ 706 (828)
Q Consensus 647 a~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s~--~~~~~~~Al~aL~nLs~-~~~n~~~iv~ 706 (828)
..+|.++ -.|-++.|-+++.++ +.-++.+|+.+|..+.. .+..|..+++
T Consensus 102 ~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 102 PRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
No 408
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.96 E-value=9e+02 Score=29.00 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhhH------HHHHHHH
Q 003348 31 KKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVE------SLMSKIR 104 (828)
Q Consensus 31 rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~------~i~~~f~ 104 (828)
++...++.+++..+.--++||...++... -...|++-+..|..+..+.+.+. ..|-++.++ .+...+.
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l~~~--E~e~L~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~~~~l~ 254 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADLQPG--EDEALEAEQQRLSNLEKLRELSQ----NALAALRGDVDVQEGSLLEGLG 254 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCcCCC--cHHHHHHHHHHHhCHHHHHHHHH----HHHHHHhCCccccccCHHHHHH
Confidence 44567788999999999999998775322 35566677777777777776543 334444443 4555555
Q ss_pred HHHHHHHH
Q 003348 105 TSGLDIML 112 (828)
Q Consensus 105 ~~~~~l~~ 112 (828)
.+...+..
T Consensus 255 ~~~~~l~~ 262 (563)
T TIGR00634 255 EAQLALAS 262 (563)
T ss_pred HHHHHHHH
Confidence 55555544
No 409
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.58 E-value=9.2e+02 Score=29.00 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=76.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCc
Q 003348 631 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGA 709 (828)
Q Consensus 631 Lv~lL~s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~ 709 (828)
+-++|.+.+.-.|.+.+-++.. +... -+..|++..|+.. ..+++..++++|+-||.-+|..+.+ .
T Consensus 521 I~ell~d~ds~lRy~G~fs~al-Ay~G-----Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~ 586 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLAL-AYVG-----TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------L 586 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHH-HHhc-----CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------h
Confidence 3345555555555554444331 1100 0134777888777 6777999999999999888775443 3
Q ss_pred HHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 003348 710 VKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 777 (828)
Q Consensus 710 V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~ 777 (828)
+.-.+++| +.+..++...+-+|...|.....+. ++..|-.++....+-+|..|+-++.-+..
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 44556666 2344555555666666666433222 24455566777788888888877766443
No 410
>PLN02400 cellulose synthase
Probab=33.44 E-value=19 Score=45.64 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.0
Q ss_pred ccccCccc-----cccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCC
Q 003348 240 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 285 (828)
Q Consensus 240 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 285 (828)
=.|.||++ ..-||-+. .||.-.||.|.+-=-++|+..||+|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 37999985 35567775 589999999985555678888999998876
No 411
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=33.33 E-value=8.4e+02 Score=30.10 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=106.8
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc
Q 003348 539 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDN 617 (828)
Q Consensus 539 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nLs~~~~ 617 (828)
.+.+..+..|-+.+=+.+..-|..+.+.|..++..++. .++..+..+|.. .+++-..-++..+..++.
T Consensus 177 ~~l~~~~~~Lc~~lL~~n~~r~~w~~rLL~lL~~~~Ps--------i~~~~~~~lL~~A~~~~~l~lli~L~~~~~~--- 245 (696)
T PF14838_consen 177 EELKAHITELCKELLSLNRKRQQWAHRLLCLLSSQHPS--------IAIEAISYLLTKAQNPEHLALLIRLYAGLSV--- 245 (696)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc--------hHHHHHHHHHHhcCCHHHHHHHHHHHhcccC---
Confidence 33456666777776666777777888888888855443 234445555543 345444444444444432
Q ss_pred cHHHHHHcCCHHHHHH-hhcC--CCHHHHHHHHHHHHHhcc----Ccc-------hHHHHHhh--CChHHHHHhhcCCCH
Q 003348 618 NKSAIANANAIEPLIH-VLQT--GSPEARENAAATLFSLSV----IED-------NKIKIGRS--GAIGPLVDLLGNGTP 681 (828)
Q Consensus 618 ~k~~I~~~g~l~~Lv~-lL~s--~~~e~~~~Aa~aL~nLS~----~~e-------~k~~I~~~--g~I~~Lv~LL~s~~~ 681 (828)
-....-.|+++..++ .+.. ...-....+..++.||.. ... ....+.+. +.++.+..+|.+++.
T Consensus 246 -~~~~~~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~ 324 (696)
T PF14838_consen 246 -VNFPSLPGLFPAVLEQCLRQIHTNTLTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDP 324 (696)
T ss_pred -CccccccchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 011112344443332 2221 011123345555555542 111 23444443 678899999988999
Q ss_pred HHHHHHHHHHHHchhcch---hHHHHH--HhCcHHHHHHhcC-C----ChHHHHHHHHHHHHHhCC-chhHHHHHh
Q 003348 682 RGKKDAATALFNLSIYHE---NKARIV--QAGAVKHLVDLMD-P----AAGMVDKAVAVLANLATI-PDGRVAIGQ 746 (828)
Q Consensus 682 ~~~~~Al~aL~nLs~~~~---n~~~iv--~~G~V~~Ll~LL~-~----~~~v~~~Al~~LanLa~~-~e~r~~i~~ 746 (828)
++...++..|..+-.... .-..+. ..-.|......|. . .......+..+|..+|.. +.++.++.+
T Consensus 325 ~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr 400 (696)
T PF14838_consen 325 EVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLR 400 (696)
T ss_pred hHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 999999999988866442 111111 1223333333332 1 123456788999999996 567766543
No 412
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.53 E-value=1.2e+02 Score=28.17 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=32.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 624 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~ 624 (828)
+|+.|+.-|.+.+++|...|+.+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 689999999999999999999999998877655555443
No 413
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=3.1e+02 Score=34.04 Aligned_cols=236 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHHcCCHHH--------HHHhhcCCCHHHHHHHHHHHHHhccC
Q 003348 586 AINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEP--------LIHVLQTGSPEARENAAATLFSLSVI 656 (828)
Q Consensus 586 aI~~Lv~lL~s~d~~v~e~A~~aL~nL-s~~~~~k~~I~~~g~l~~--------Lv~lL~s~~~e~~~~Aa~aL~nLS~~ 656 (828)
.+|.++.+|.++..-+...|+.++..+ ...+.+...|..++-+.+ |+..++.+...--++.+.++..+-..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Q ss_pred cchHHHHHhhCChHHHHHhhc---------CCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCC-hHHHHH
Q 003348 657 EDNKIKIGRSGAIGPLVDLLG---------NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPA-AGMVDK 726 (828)
Q Consensus 657 ~e~k~~I~~~g~I~~Lv~LL~---------s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~-~~v~~~ 726 (828)
.+.-..-.....+..|.+++. ..+.-.-+.-+.++...|........-.+...+|.+-.+|.++ .+..-.
T Consensus 579 ~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPY 658 (960)
T KOG1992|consen 579 LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPY 658 (960)
T ss_pred CHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhCCchh--------------HHHHHhCCc-HHHHHHHHcc----CCHHHH--HHHHHHHHHHhhCCHHhHHH
Q 003348 727 AVAVLANLATIPDG--------------RVAIGQENG-IPVLVEVVEL----GSARGK--ENAAAALLQLCTNSSRFCSM 785 (828)
Q Consensus 727 Al~~LanLa~~~e~--------------r~~i~~~g~-I~~Lv~lL~s----~s~~~k--e~Av~~L~~L~~~~~~~~~~ 785 (828)
++.+|+.|..+..+ ...+++..| ||.++.+++. ++.... .....+|..+-.--+.....
T Consensus 659 vfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D 738 (960)
T KOG1992|consen 659 VFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND 738 (960)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc
Q ss_pred HHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhccc
Q 003348 786 VLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQR 821 (828)
Q Consensus 786 v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~ 821 (828)
--.--.+..++..+... .+-.+.....+++.+++.+
T Consensus 739 h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 739 HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSK 776 (960)
T ss_pred hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccC
No 414
>PRK05978 hypothetical protein; Provisional
Probab=32.38 E-value=25 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=23.4
Q ss_pred ccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003348 240 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
-+||-|++ |+-|. .|++- +.+||.|++.+.+.
T Consensus 34 grCP~CG~----------G~LF~-----g~Lkv-~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLKP-VDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----ccccc-CCCccccCCccccC
Confidence 36999987 77664 45554 36799999998764
No 415
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.35 E-value=7.9e+02 Score=27.87 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=81.4
Q ss_pred HhccCcchHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhc--C--CChHHHHH
Q 003348 652 SLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--D--PAAGMVDK 726 (828)
Q Consensus 652 nLS~~~e~k~~I~~~g~I~~Lv~LL~s~-~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL--~--~~~~v~~~ 726 (828)
+|+..++.-... +..-.+.+-.-+... ...-+.+|+..|..|+...+....-+=.+.+..++.-. + .+..-.+.
T Consensus 196 nl~~~e~D~Elf-EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 196 NLCLREEDEELF-EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp HHS--HHHHHHH-HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred ccCCCHHHHHHH-ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 444443333322 334444444444432 35677788889999986433221111123333333311 2 33456778
Q ss_pred HHHHHHHHhCCchh----H---------HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHH
Q 003348 727 AVAVLANLATIPDG----R---------VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 793 (828)
Q Consensus 727 Al~~LanLa~~~e~----r---------~~i~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~ 793 (828)
|+.++..|+..... . ..+....++|.|. --.+..|-.+..|+..+...-..-+. +.+ .++++
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~ 349 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFP 349 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHH
Confidence 89988888874422 1 1122222233332 00135677888888888887765442 222 34799
Q ss_pred HHHHhhcCCCHHHHHHHHHH
Q 003348 794 PLVALSQSGTPRAKEKAQAL 813 (828)
Q Consensus 794 ~L~~LL~~g~~r~r~kA~~l 813 (828)
.|+..+.+++.-+.--|+.+
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhh
Confidence 99999999998888777654
No 416
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=32.11 E-value=19 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=8.5
Q ss_pred CCCCcccccCccc
Q 003348 235 PIPSDFCCPLSLE 247 (828)
Q Consensus 235 ~~p~~f~CpI~~~ 247 (828)
.+|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999974
No 417
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.30 E-value=34 Score=31.35 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=21.2
Q ss_pred CcccccCccc----cccCCeecC-CCcchhHHHHHH
Q 003348 238 SDFCCPLSLE----LMTDPVIVA-SGQTYERAFIKK 268 (828)
Q Consensus 238 ~~f~CpI~~~----lm~dPV~~~-~G~ty~r~~I~~ 268 (828)
..-+||=|+. |=+||++.| ||.+|-|+..+.
T Consensus 8 tKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 8 TKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred ccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3456888874 557788876 888887766543
No 418
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=31.22 E-value=4.1e+02 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSIN 615 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~ 615 (828)
=++|.++.++++.++.++..++.+|..+...
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~ 149 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEK 149 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999988654
No 419
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=1.1e+03 Score=29.25 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=85.2
Q ss_pred cCcHHHHHHHHc-C-------CCHHHHHHHHHHHHHhhc--CCc-cHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003348 584 CGAINILVDMLH-S-------SETKIQENAVTALLNLSI--NDN-NKSAIANANAIEPLIHVLQTGSPEARENAAATLFS 652 (828)
Q Consensus 584 ~GaI~~Lv~lL~-s-------~d~~v~e~A~~aL~nLs~--~~~-~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~n 652 (828)
+|.++.+++.|. + +++.-.+-|+..+.++.. ... .-.-+++.=.++.++..+++...-.+..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 488999999983 2 234445667777777743 322 23334455566777778888888889999998888
Q ss_pred hccCcchHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH--hCcHHHHHHh
Q 003348 653 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDL 716 (828)
Q Consensus 653 LS~~~e~k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~--~G~V~~Ll~L 716 (828)
++. +.+..-.-..+.+.....|++++..++..|+.||.-+-.+.....++.+ .+.++.|+.|
T Consensus 487 ~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 487 IEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 843 2333333345667777788888888999999999888776654444333 3344444443
No 420
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=30.96 E-value=2.5e+02 Score=29.20 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHHhhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHhhHHHHHHHHH
Q 003348 26 KLDIVKKYYQRAEDILKLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRT 105 (828)
Q Consensus 26 ~~~~~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~~i~~~f~~ 105 (828)
.-..|.|||..+-.-+.=+.||++.++..- ++....-+.-+...+..+-.++ |..+|.+|++. ..+.--.=|+.
T Consensus 66 ld~vF~KyC~k~~~~~~C~~~f~~~v~~Cl---~~ee~~~~~~~~~i~~~ll~fv--C~k~Gd~Ialf-~~~~g~eC~~~ 139 (213)
T PF07165_consen 66 LDEVFNKYCPKRPQAKECFDPFTEKVKPCL---DEEEKEILDVMMNIIPSLLDFV--CYKDGDRIALF-IAEGGPECFES 139 (213)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhcccCC---CHHHHHHHHHHHHHHHHHHHHH--HcCCchhhHhh-cccCcHHHHHH
Confidence 344679999999999999999999998653 4445555566677777777777 77789999774 33333333666
Q ss_pred HHHHHHHHHHhh
Q 003348 106 SGLDIMLQLKSS 117 (828)
Q Consensus 106 ~~~~l~~~L~~~ 117 (828)
....|.+.....
T Consensus 140 ~~~~i~~C~~~~ 151 (213)
T PF07165_consen 140 LKDNIQQCANKT 151 (213)
T ss_pred hhHHHHHHHHHH
Confidence 666676766554
No 421
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.08 E-value=29 Score=37.24 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHhc------------CCCCCCCCCCcCCCCC
Q 003348 259 QTYERAFIKKWIDL------------GLFVCPKTRQTLAHTT 288 (828)
Q Consensus 259 ~ty~r~~I~~~~~~------------~~~~cP~t~~~l~~~~ 288 (828)
--.||+|+.+||.. |..+||.||+.+...+
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 35789999999863 4467999999876543
No 422
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.89 E-value=49 Score=28.04 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHH
Q 003348 257 SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 296 (828)
Q Consensus 257 ~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~ 296 (828)
--+|||..|-+.-+. ..||.||-.|......|.-.|.
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHHh
Confidence 367999999987765 4699999999888888865443
No 423
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.82 E-value=1.1e+03 Score=31.57 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=69.3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCcchHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKI 663 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS-~~~e~k~~I 663 (828)
+.+..++..|..+...++..|+.+|.++..-+. ........-..+..-+...+..+|+.|+..+.... .+++.-..+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 577888889998889999999999998854321 11112223333445566677889999998887432 222222221
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchhc
Q 003348 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 697 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~ 697 (828)
...+..-+.+....+++.++..|..+|..
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 23344444556678999999999999883
No 424
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.75 E-value=8.1e+02 Score=27.21 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=118.8
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-chHHHHHhh-CChHHHHHh-hcCC-C-HHHHHHHHHHHHHc
Q 003348 620 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRS-GAIGPLVDL-LGNG-T-PRGKKDAATALFNL 694 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL~nLS~~~-e~k~~I~~~-g~I~~Lv~L-L~s~-~-~~~~~~Al~aL~nL 694 (828)
..+..+|.+..++.-|.....+.+..++.+..++-..+ ..+...++. ..-+.++.. ++.. + ++....+-.-|..-
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 45678899999999999999898888888777764321 222222221 112222222 2221 1 22222222222222
Q ss_pred hhcchhHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhCC---c-HHHHHHHHccCCHHHHHHH
Q 003348 695 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN---G-IPVLVEVVELGSARGKENA 768 (828)
Q Consensus 695 s~~~~n~~~iv~~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~-~~e~r~~i~~~g---~-I~~Lv~lL~s~s~~~ke~A 768 (828)
..++.-...+....-.......+ .+.-++...|..+...+.. +.....++...+ . ....-.++++++.-++..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 22333334444555555555544 3555778888888887766 544455554433 2 3346678889999999999
Q ss_pred HHHHHHHhhCCHH---hHHHHHhCCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 003348 769 AAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 769 v~~L~~L~~~~~~---~~~~v~~~g~v~~L~~LL~~g~~r~r~kA~~lL~~L~~~ 820 (828)
...|..+--+.+. ..+.+.....+..+..+|+..+..++-.|=..-+.+...
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 9999887765432 223333345677788888888777777776666665543
No 425
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.24 E-value=5.5e+02 Score=31.64 Aligned_cols=133 Identities=23% Similarity=0.237 Sum_probs=84.7
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003348 585 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI 663 (828)
Q Consensus 585 GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~l-L~s~~~e~~~~Aa~aL~nLS~~~e~k~~I 663 (828)
.-|.-|+.+|.+.+..+.+.+-..+..+..... .. ..+..|+.. +++++.. |+.+|..+- .+..|
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~--~~----~l~~~l~~y~~~t~s~~----~~~il~~~~-~P~~K--- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDR--EP----WLVNGLVDYYLSTNSQR----ALEILVGVQ-EPHDK--- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccc--hH----HHHHHHHHHHhhcCcHH----HHHHHHhcC-CccHH---
Confidence 457788999999999988888887755432211 11 235555653 4555543 334444331 11112
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHHchh-cchhHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 003348 664 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 664 ~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~-~~~n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~ 736 (828)
.++..|-+.+. .+..+..++..|..+.. .+.-..+|++..+++.|+..| +.+..++..|+.+|..|.-
T Consensus 70 ---~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 70 ---HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ---HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 22344444444 35677888888988877 456667788999999999988 5667777888888777765
No 426
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.22 E-value=3.3e+02 Score=24.93 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=51.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNL 612 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~Lv~lL~------s~d~~v~e~A~~aL~nL 612 (828)
...+..|.+.|.+.++.++..|+..|-.+.+.. +.....++...++..++.+.. ..+..+++.+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 568899999999999999999999999998864 345556666666666655411 12677888877776543
No 427
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=28.84 E-value=31 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=18.1
Q ss_pred CeecCCCc-----chhHHHHHHHHhc-CCCCCCCC
Q 003348 252 PVIVASGQ-----TYERAFIKKWIDL-GLFVCPKT 280 (828)
Q Consensus 252 PV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t 280 (828)
|.+.||+- -.=+.|+++|+.. +..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67888743 3468899999985 45569886
No 428
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.49 E-value=3.9e+02 Score=33.17 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=98.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-CchhHHHHH
Q 003348 667 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDGRVAIG 745 (828)
Q Consensus 667 g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~-~~e~r~~i~ 745 (828)
..+..+...+.+++....+..+.++.+|+.-..-..+-.....-+.....=..-..+.+....+|..++. .++....+.
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567777888888888888888888888662211110011111111111001112345667788888888 555555555
Q ss_pred -hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH--HhHHHHHhC-------CCHHHHHHhhcCC----CHHHHHHHH
Q 003348 746 -QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS--RFCSMVLQE-------GAVPPLVALSQSG----TPRAKEKAQ 811 (828)
Q Consensus 746 -~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~--~~~~~v~~~-------g~v~~L~~LL~~g----~~r~r~kA~ 811 (828)
+.+....++.++-++++...+.|..+|......++ +..+.+++. |+...|-.+.... .+++-+...
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~ 600 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLM 600 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 46779999999999999999999999999886543 344455543 3344444444433 477778888
Q ss_pred HHHHHhhcccc
Q 003348 812 ALLSYFRNQRH 822 (828)
Q Consensus 812 ~lL~~L~~~~~ 822 (828)
.+|+.|.+-..
T Consensus 601 DIi~~Lcdp~~ 611 (727)
T PF12726_consen 601 DIIEVLCDPVS 611 (727)
T ss_pred HHHHHHcCCCC
Confidence 88888877543
No 429
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=28.29 E-value=1.5e+02 Score=26.11 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhccCCChH--HHHHHHHHHHHHHHHHHHHHHhhccCh
Q 003348 30 VKKYYQRAEDILKLLKPILDAIVDSDLASDE--VLYKAFEEFGQSIDELRELIENWQPLL 87 (828)
Q Consensus 30 ~rk~~~~l~rrlkLL~pllEEl~~~~~~~~~--~~~~~l~eL~~aL~~Ak~Ll~~c~~~~ 87 (828)
.+++=..|+.||+-..|+++.|...+.-..+ .++.+...=..-+.+...+++.|..+.
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~ 62 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEV 62 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchH
Confidence 4667788999999999999999877643333 223333223334445555555555433
No 430
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.07 E-value=3.9e+02 Score=31.43 Aligned_cols=111 Identities=20% Similarity=0.313 Sum_probs=68.6
Q ss_pred hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHH----HhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCC--
Q 003348 707 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI----GQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNS-- 779 (828)
Q Consensus 707 ~G~V~~Ll~LL~~~~~v~~~Al~~LanLa~~~e~r~~i----~~~g~I~~Lv~lL~-s~s~~~ke~Av~~L~~L~~~~-- 779 (828)
.++|..+++.++ .+.+.+--+.++. +..++++..+ .+.+.|+.|+.+|. +.+...+.+|+.+|..+.+-+
T Consensus 20 ~~~v~~llkHI~-~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHID-TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhcC-CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 556666666663 2333443334333 2233444443 45788999999996 467889999998887775432
Q ss_pred -----------HHhHHHHHhCCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcc
Q 003348 780 -----------SRFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQALLSYFRNQ 820 (828)
Q Consensus 780 -----------~~~~~~v~~~g~v~~L~~LL~--~g~~r~r~kA~~lL~~L~~~ 820 (828)
......+..+..+..|+..+- .+...+-....-++.++++.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 123445556778888888777 34444555555577777654
No 431
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.78 E-value=1.8e+02 Score=34.12 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=59.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHH-HHHhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhccccc
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCS-MVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQRHG 823 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~-~v~~~g~v~~L~~LL~~g--~~r~r~kA~~lL~~L~~~~~~ 823 (828)
++..|.+.|.+.++.++..|..+|-.+..+.+.... .|.+.+++.-++.+.... ...+|+++..+|.-=.....|
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 577888888888889999999988888888776554 788889999999998877 467999999888765544433
No 432
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.62 E-value=3.9e+02 Score=25.85 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHH-HHHHHcC---CCHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHN-MDNRMVIANCGAINI-LVDMLHS---SETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~GaI~~-Lv~lL~s---~d~~v~e~A~~aL~nLs 613 (828)
+..+..|-+.|.. .++.++..|+..|-.+.+.. ......++..+++.- |+.++.. .+..|+...+..+...+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 5788999999984 58889999999999988854 345566777899986 9999863 24578888888887775
No 433
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.45 E-value=1.2e+02 Score=35.99 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=49.0
Q ss_pred hCcHHHHHHh-c-CCChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 003348 707 AGAVKHLVDL-M-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 780 (828)
Q Consensus 707 ~G~V~~Ll~L-L-~~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~Av~~L~~L~~~~~ 780 (828)
.|+|..|+.. . +.+.+++..|+.+|..+|.. +...++..+++| ++.++-+|...+.+|.--|.+.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 5677777776 3 56788899999999888864 334566677776 46788888888888887787765
No 434
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.96 E-value=2.8e+02 Score=25.33 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=50.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHHHHHh---hcCC---CHHHHHHHHHHHHHhh
Q 003348 749 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVAL---SQSG---TPRAKEKAQALLSYFR 818 (828)
Q Consensus 749 ~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~L~~L---L~~g---~~r~r~kA~~lL~~L~ 818 (828)
++..|.+.|.+.++.++..|..+|-.++.+++ .....+.....+..++.+ -..| ...+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46677777888999999999999999999875 445555555555555443 1112 4689999999887653
No 435
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.14 E-value=1.4e+02 Score=32.59 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC--------------hhhHHHHHhcCcHHHHHHHHc
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN--------------MDNRMVIANCGAINILVDMLH 595 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s--------------~~nr~~i~~~GaI~~Lv~lL~ 595 (828)
-+..|..+++.|.+.+...+..|++.|..++.+. ..|...+.+.|+++.|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3678999999999999989999999999888753 345556777888888888885
No 436
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.08 E-value=66 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHH
Q 003348 562 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ 602 (828)
Q Consensus 562 ~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~ 602 (828)
..++.+..|+. .|+--..+++.|+++.|+.+|.+++.++.
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 46777888888 45677888899999999999999887654
No 437
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=25.88 E-value=3.4e+02 Score=27.69 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003348 149 IKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLK 193 (828)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~l~~i~~~l~l~~~~~~~~E~~~l~~~~ 193 (828)
|++...+-.+...|-.++=..+..+|.-....++.+|+.+|..+.
T Consensus 121 V~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~ 165 (209)
T KOG2910|consen 121 VDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESEL 165 (209)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh
Confidence 333333333334454455556667777777788888888887743
No 438
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=25.58 E-value=70 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=21.1
Q ss_pred ccCccccccCCeec---CCCcchhHHHHHHHHhcCCC-CCCCC
Q 003348 242 CPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLF-VCPKT 280 (828)
Q Consensus 242 CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~~~~-~cP~t 280 (828)
|-+|.++..-=+.= .|+..+=..|+.+||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 45566665555553 37878889999999986533 59987
No 439
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.54 E-value=4.1e+02 Score=29.76 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCC
Q 003348 544 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-------ETKIQENAVTALLNLSIND 616 (828)
Q Consensus 544 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~-------d~~v~e~A~~aL~nLs~~~ 616 (828)
....+.+.+.+.+...+..|+..|+.=.. =...+|.++.++... +-......+..+..|..++
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD~g----------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTDPG----------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCC----------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 34455555655666666666665543221 124678888877542 3445555556666665555
Q ss_pred ccHHHHHHcCCHHHHHHhhc-----C-----CCHHHHHHHHHHHHHhcc
Q 003348 617 NNKSAIANANAIEPLIHVLQ-----T-----GSPEARENAAATLFSLSV 655 (828)
Q Consensus 617 ~~k~~I~~~g~l~~Lv~lL~-----s-----~~~e~~~~Aa~aL~nLS~ 655 (828)
.-.....-.-.+++++.++- . ....+|+.|+.+|..++.
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 44333333346777776552 1 236799999999998874
No 440
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=25.47 E-value=28 Score=27.14 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=21.5
Q ss_pred ecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCC
Q 003348 254 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 287 (828)
Q Consensus 254 ~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 287 (828)
+..+.|-.|..|+..-+..+ ..||+|+.+|+.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSS-SEETTTTEE----
T ss_pred eeecchhHHHHHHHHHhccc-cCCCcccCcCccc
Confidence 34457999999999888765 5599999998753
No 441
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=25.11 E-value=44 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=19.5
Q ss_pred eecCCCcchhHHHHHHHHhcCCCCCCCC
Q 003348 253 VIVASGQTYERAFIKKWIDLGLFVCPKT 280 (828)
Q Consensus 253 V~~~~G~ty~r~~I~~~~~~~~~~cP~t 280 (828)
|++|.|+.||+.+|.+-++. .||+-
T Consensus 10 VtIp~G~KYdK~wLl~~iq~---~c~v~ 34 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS---HCSVP 34 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH---HSSS-
T ss_pred EEecCCcccCHHHHHHHHHH---HCCCC
Confidence 78999999999999999875 37654
No 442
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.02 E-value=3.7e+02 Score=25.95 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=56.7
Q ss_pred cHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH-HhHHHHHhCCCHHH-HHHhhcC-C--CHHHHHHHHHHHHHhhcccc
Q 003348 749 GIPVLVEVVEL-GSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP-LVALSQS-G--TPRAKEKAQALLSYFRNQRH 822 (828)
Q Consensus 749 ~I~~Lv~lL~s-~s~~~ke~Av~~L~~L~~~~~-~~~~~v~~~g~v~~-L~~LL~~-g--~~r~r~kA~~lL~~L~~~~~ 822 (828)
++..|.+.|.. .++.++..|..+|-.+..+.+ .....+.....+.- |+.++.. . ...++.+...++........
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 46677777764 589999999999999888875 45566777788887 8998863 2 34789999998887766543
Q ss_pred c
Q 003348 823 G 823 (828)
Q Consensus 823 ~ 823 (828)
+
T Consensus 119 ~ 119 (141)
T cd03565 119 G 119 (141)
T ss_pred C
Confidence 3
No 443
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.88 E-value=4.6e+02 Score=24.48 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC---------hhhHHH----HHhc--CcHHHHHHHHcCCC----HHH
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN---------MDNRMV----IANC--GAINILVDMLHSSE----TKI 601 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s---------~~nr~~----i~~~--GaI~~Lv~lL~s~d----~~v 601 (828)
+.+.++.+++.++++ +......+..|+.+..+- ...|.. +.+. ..+..+..++.... .++
T Consensus 24 Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 24 WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHH
T ss_pred CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 356788888888773 444555666665554321 111222 2222 34444444454322 778
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 003348 602 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 650 (828)
Q Consensus 602 ~e~A~~aL~nLs~~~~~k~~I~~~g~l~~Lv~lL~s~~~e~~~~Aa~aL 650 (828)
...++.++..... --.-..+...+.++.++++|..+. .+..|+.+|
T Consensus 103 ~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 8888888877644 334566667788999999995554 366666554
No 444
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=24.75 E-value=64 Score=27.91 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=22.3
Q ss_pred ccccCcccc-----ccCCeec--CCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 240 FCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 240 f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
-.|.||++= =-+|.+. .||.-.||.|.+-=.++|+..||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 358888752 2345454 4788899999998888898899999977654
No 445
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=24.30 E-value=9e+02 Score=25.93 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=64.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH-HHHHHHcC--CCHHHHHHHHHHHHHhhcCCccH
Q 003348 543 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN-ILVDMLHS--SETKIQENAVTALLNLSINDNNK 619 (828)
Q Consensus 543 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~-~Lv~lL~s--~d~~v~e~A~~aL~nLs~~~~~k 619 (828)
+.++.|.+.|+..++... ..|.++++.+.++ -|+.+|.+ +++++...++..|.+|+.--..
T Consensus 13 ~~LkdL~r~lr~dd~~~~---------------~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~- 76 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR---------------DVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL- 76 (266)
T ss_pred HHHHHHHHHHHHhCcchH---------------HHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH-
Confidence 567788888876654321 2344444444444 44444433 3788999999999999742110
Q ss_pred HHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC-----------CCHHHHHH
Q 003348 620 SAIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKD 686 (828)
Q Consensus 620 ~~I~~~g~l~~Lv~lL~s--~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s-----------~~~~~~~~ 686 (828)
+ ... .+...+.+......++ -.+|..+...+++..++.++.. .+..+.+.
T Consensus 77 -----------~---~~~~~~~~~~~~~~~~l~~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~l 139 (266)
T PF04821_consen 77 -----------L---VESQPKDKNQRRNIPELLKYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIEL 139 (266)
T ss_pred -----------h---ccCCCCChHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHH
Confidence 0 000 0111222222222222 2455666666666666655521 12456777
Q ss_pred HHHHHHHchhc
Q 003348 687 AATALFNLSIY 697 (828)
Q Consensus 687 Al~aL~nLs~~ 697 (828)
.+..+.||..-
T Consensus 140 vL~LiRNlL~I 150 (266)
T PF04821_consen 140 VLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHhcC
Confidence 88888888663
No 446
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=24.29 E-value=2.6e+02 Score=28.66 Aligned_cols=99 Identities=11% Similarity=0.194 Sum_probs=44.0
Q ss_pred hHHHHHHhCcHHHHHHhc----CCC---------------hHHHHHHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHHcc
Q 003348 700 NKARIVQAGAVKHLVDLM----DPA---------------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 759 (828)
Q Consensus 700 n~~~iv~~G~V~~Ll~LL----~~~---------------~~v~~~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL~s 759 (828)
.+..+...|++..++++| +.. ..+...|..+|..+|. +.+++..+.+. ++.+...+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 334455688888888887 222 2467789999999998 55666666653 3333333332
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHHHHhhcC
Q 003348 760 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 801 (828)
Q Consensus 760 ~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L~~LL~~ 801 (828)
.....--.+..+|..+-.++.+.+..+.+.. +..++.++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 1111123456677777777776666654443 6666666665
No 447
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=1.4e+03 Score=28.08 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH-------HHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHh
Q 003348 541 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-------MVIANCGAINILVDMLHS-SETKIQENAVTALLNL 612 (828)
Q Consensus 541 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr-------~~i~~~GaI~~Lv~lL~s-~d~~v~e~A~~aL~nL 612 (828)
.++-+..+|+.++.++++.|..|+..++...+.+...- .++... ...|..+..+ .++......+-+|..|
T Consensus 46 lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrph--y~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPH--YGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccc--hhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 46678999999999999999999999998877553221 111111 1122222222 3466667777777777
Q ss_pred hcC
Q 003348 613 SIN 615 (828)
Q Consensus 613 s~~ 615 (828)
+..
T Consensus 124 amt 126 (878)
T KOG2005|consen 124 AMT 126 (878)
T ss_pred hee
Confidence 654
No 448
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.95 E-value=1.7e+02 Score=32.27 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=27.8
Q ss_pred ccccCccccccCCeec----CCC--cchhHHHHHHHHhcCCCCCCCCCCc
Q 003348 240 FCCPLSLELMTDPVIV----ASG--QTYERAFIKKWIDLGLFVCPKTRQT 283 (828)
Q Consensus 240 f~CpI~~~lm~dPV~~----~~G--~ty~r~~I~~~~~~~~~~cP~t~~~ 283 (828)
=.||+|+..-.--|+. ..| +-+|--|=.+|--. ...||.|+..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 3899999864333332 245 44677777777543 3569999874
No 449
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=23.83 E-value=46 Score=27.81 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.2
Q ss_pred hhHHHHHHHHhc
Q 003348 261 YERAFIKKWIDL 272 (828)
Q Consensus 261 y~r~~I~~~~~~ 272 (828)
|||.|+.+|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 450
>PHA03096 p28-like protein; Provisional
Probab=23.62 E-value=51 Score=35.91 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=29.8
Q ss_pred ccccCcccccc-CCe-------ecCCCcchhHHHHHHHHhcC--CCCCCCCCCc
Q 003348 240 FCCPLSLELMT-DPV-------IVASGQTYERAFIKKWIDLG--LFVCPKTRQT 283 (828)
Q Consensus 240 f~CpI~~~lm~-dPV-------~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~ 283 (828)
-.|-||.+.-. -|+ +-.|-|+||-.||..|-... ..+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 34888885432 222 23589999999999998753 2457777653
No 451
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.52 E-value=5.5e+02 Score=24.87 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003348 660 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 694 (828)
Q Consensus 660 k~~I~~~g~I~~Lv~LL~s~~~~~~~~Al~aL~nL 694 (828)
|........-..+..+|.+++.++++.|+.||+..
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33444446677788999999999999999999874
No 452
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=23.38 E-value=1.4e+02 Score=36.28 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCHHHHH---HHHhhcCCCCHHHHHHHHHHHH
Q 003348 141 EYEQTSSLIKEAIRDQVDGVAPSSEILV---KVAESLSLRSNQEILIEAVALE 190 (828)
Q Consensus 141 ~~e~~~~~~~~~l~~~~~~~~~~~~~l~---~i~~~l~l~~~~~~~~E~~~l~ 190 (828)
..+.|...|. .|+|+|+++.|. +++++.|+.+..++ .+...|.
T Consensus 579 ~~~~F~~ava------~D~Rsy~~~lf~~a~~~l~~~~l~~~~~i-~~f~~l~ 624 (629)
T PF10408_consen 579 DSDKFVQAVA------NDGRSYSPELFEKAVRILRRIGLKSEDEI-EKFEELA 624 (629)
T ss_dssp T-HHHHHHHH------H-TTT--HHHHHHHHHHHTTSTSSTHHHH-HHHHHHC
T ss_pred CchHHHHHHH------hCCCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH
Confidence 4556666554 689999999998 67788999888766 3344443
No 453
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.32 E-value=1.6e+03 Score=29.01 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccCCCC-----cchhHHHHHHHHhhcc---
Q 003348 69 FGQSIDELRELIENWQPLLSRVYFVLQVESLMSKIRTSGLDIMLQLKSSLQYFPGE-----LSSTSLELCSQKIKHM--- 140 (828)
Q Consensus 69 L~~aL~~Ak~Ll~~c~~~~Sklyl~~~~~~i~~~f~~~~~~l~~~L~~~~~~~p~~-----~~~~~~e~~~~~~~~~--- 140 (828)
-...|+..|.+++. .=-|--+++|+.-+.+ +.|..+|..+ ..+|.+ ++.+..+++....+++
T Consensus 1013 AK~QMDaIKqmIek----Kv~L~~L~qCqdALeK-----qnIa~AL~AL-n~IPSdKEms~Is~eLReQIq~~KQ~LesL 1082 (1439)
T PF12252_consen 1013 AKAQMDAIKQMIEK----KVVLQALTQCQDALEK-----QNIAGALQAL-NNIPSDKEMSKISSELREQIQSVKQDLESL 1082 (1439)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh-----hhHHHHHHHH-hcCCchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 46678888999874 2122234555544443 3344444443 455555 4444444443322221
Q ss_pred ----------c-------hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 003348 141 ----------E-------YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAE 200 (828)
Q Consensus 141 ----------~-------~e~~~~~~~~~l~~~~~~~~~~~~~l~~i~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~ 200 (828)
+ ++.+...+.+-+-+++...-++.+..+.....+ ..+.+|+..|+.++.++....
T Consensus 1083 QRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~l-----nnlqqElklLRnEK~Rmh~~~ 1154 (1439)
T PF12252_consen 1083 QRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANL-----NNLQQELKLLRNEKIRMHSGT 1154 (1439)
T ss_pred HHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-----HHHHHHHHHHHhHHHhhccCC
Confidence 1 122222233333334443334444444433333 346678888877766654433
No 454
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.18 E-value=6.8e+02 Score=27.05 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCcHHHHHH----HHc--------CCCHHHHHHHHHH
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVD----MLH--------SSETKIQENAVTA 608 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr-~~i~~~GaI~~Lv~----lL~--------s~d~~v~e~A~~a 608 (828)
.-.+|.++..+.+.+++.+.+++..|..|....+... ..+.+.|....+-. +|. .+...+...|.-+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4578999999999999999999999999987543332 23556676555544 333 2345566777777
Q ss_pred HHHhh
Q 003348 609 LLNLS 613 (828)
Q Consensus 609 L~nLs 613 (828)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 77663
No 455
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.14 E-value=59 Score=35.75 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=35.1
Q ss_pred CcccccCccccccCCeecCCCcchhHHHHHHH--HhcCCCCCCCCCCc
Q 003348 238 SDFCCPLSLELMTDPVIVASGQTYERAFIKKW--IDLGLFVCPKTRQT 283 (828)
Q Consensus 238 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~--~~~~~~~cP~t~~~ 283 (828)
+...|-||-+=.+---++||||..|-.|-.+- +-. ...||+|+..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 56789999998888888999999999996553 222 2459999864
No 456
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.87 E-value=24 Score=28.13 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.4
Q ss_pred CCCCCCCcCCCC
Q 003348 276 VCPKTRQTLAHT 287 (828)
Q Consensus 276 ~cP~t~~~l~~~ 287 (828)
.||+|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999988763
No 457
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.79 E-value=1.2e+03 Score=27.01 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHhCCcHHHHHHHHcc------CCHHHHHHHHHHHHHHhhCCHHhHH-HHHhC--CCH
Q 003348 722 GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL------GSARGKENAAAALLQLCTNSSRFCS-MVLQE--GAV 792 (828)
Q Consensus 722 ~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~Lv~lL~s------~s~~~ke~Av~~L~~L~~~~~~~~~-~v~~~--g~v 792 (828)
.+...+-.++.||+...-|..+ +..|..+|.+ .+..+...|+.+|..+..+.++... .+--. -++
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~------i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSA------IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHH------HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 5566777788888876555443 5567777732 2445566888888887776632222 22112 267
Q ss_pred HHHHHhhcCCCHHHHHHHHH
Q 003348 793 PPLVALSQSGTPRAKEKAQA 812 (828)
Q Consensus 793 ~~L~~LL~~g~~r~r~kA~~ 812 (828)
+.|...++.+++++--....
T Consensus 304 ~sl~~al~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILL 323 (464)
T ss_pred HHHHHHHhCCCCeehHHHHH
Confidence 78888888777654433333
No 458
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.57 E-value=1.1e+03 Score=26.54 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHchhcchhHHHHHHhC---cHHHHHHhc-C--CChHHHHHHHHHHHHHhCCchhHHHHHhCCcHHHH
Q 003348 680 TPRGKKDAATALFNLSIYHENKARIVQAG---AVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 753 (828)
Q Consensus 680 ~~~~~~~Al~aL~nLs~~~~n~~~iv~~G---~V~~Ll~LL-~--~~~~v~~~Al~~LanLa~~~e~r~~i~~~g~I~~L 753 (828)
+.++...|+.+|..+..+++....+-+.- .+...+..+ + .+..++..++++|+.=-..+. ++....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHH
Confidence 56888899999998887777655554432 344444445 2 345566666776664222221 3333444455
Q ss_pred HHHHc-----cCCHHHHHHHHHHHHHHhhCCHHhHHHHHh-CC-CHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003348 754 VEVVE-----LGSARGKENAAAALLQLCTNSSRFCSMVLQ-EG-AVPPLVALSQSGTPRAKEKAQALLSYFR 818 (828)
Q Consensus 754 v~lL~-----s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~-~g-~v~~L~~LL~~g~~r~r~kA~~lL~~L~ 818 (828)
+..+. -++..+...+..++.+|....+. .+.+ .+ -++.|+..+-+....++.+|..++..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 44442 25677888888899998887663 2322 22 4677777777777888888877766553
No 459
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.41 E-value=6.8e+02 Score=25.40 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=66.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH--h--------------CcH----HHHHHhc--CCChHHHHHH
Q 003348 670 GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--A--------------GAV----KHLVDLM--DPAAGMVDKA 727 (828)
Q Consensus 670 ~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~--~--------------G~V----~~Ll~LL--~~~~~v~~~A 727 (828)
..+.-++.+.+++++..|+.+|..|-.....--...+ . ..+ ..|+..| +.+..+....
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3344456777899999999999888665432222222 0 011 2233334 3456677788
Q ss_pred HHHHHHHhC-CchhHHHH-HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 003348 728 VAVLANLAT-IPDGRVAI-GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 779 (828)
Q Consensus 728 l~~LanLa~-~~e~r~~i-~~~g~I~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~ 779 (828)
+.+|+.|.. .|-.|-.. .-...+..+..++.+.+..++..+..++..+....
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 889988888 44444221 00123455555667788899999988888876543
No 460
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=22.37 E-value=1.8e+02 Score=25.52 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHH--hhhhhhHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 003348 30 VKKYYQRAEDIL--KLLKPILDAIVDSDLASDEVLYKAFEEFGQSIDELRELIENWQPLLSR 89 (828)
Q Consensus 30 ~rk~~~~l~rrl--kLL~pllEEl~~~~~~~~~~~~~~l~eL~~aL~~Ak~Ll~~c~~~~Sk 89 (828)
+|++=.++++.+ ..+.+||++|.+.+.......-.--++-....++|+.|+......|+.
T Consensus 2 ~~~~r~~~i~~l~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~~ 63 (83)
T cd08325 2 LKEKRVKFIESVGKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQE 63 (83)
T ss_pred ccchHHHHHHHhhHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 355556777777 578999999998885444432222222344689999999987654544
No 461
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=22.25 E-value=41 Score=30.51 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=17.1
Q ss_pred cCCCcchhHHHHHHHHhcCCCCCCCCCCc
Q 003348 255 VASGQTYERAFIKKWIDLGLFVCPKTRQT 283 (828)
Q Consensus 255 ~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 283 (828)
+.||+.|+.. ..-+.+| ||.||-.
T Consensus 6 trCG~vf~~g--~~~il~G---Cp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDG--SEEILSG---CPKCGCN 29 (112)
T ss_pred cccccccccc--cHHHHcc---Cccccch
Confidence 5799999886 3344444 9999854
No 462
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.22 E-value=3.6e+02 Score=27.25 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=53.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 003348 542 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 613 (828)
Q Consensus 542 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL~s~d~~v~e~A~~aL~nLs 613 (828)
....+.+++..-+.+..++..|+..+....+..--| -.-++|.|+.+..++++.++..|...+..+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 456778888888899999999999988776643222 1247999999999999999999999998884
No 463
>PRK12495 hypothetical protein; Provisional
Probab=22.13 E-value=1.7e+02 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCC
Q 003348 236 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 286 (828)
Q Consensus 236 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 286 (828)
.+-.|.||.|+..+- ++ .|...||.|++.+..
T Consensus 39 tmsa~hC~~CG~PIp-----------------a~--pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIF-----------------RH--DGQEFCPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCccc-----------------CC--CCeeECCCCCCcccc
Confidence 467889999997432 11 344558888777665
No 464
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=1.3e+02 Score=33.70 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=53.8
Q ss_pred HHHHHHHHHhC-CchhHHHHHhCCcHHHHHHHH--ccCCHHHHHHHHHHHHHHhhCCHHhHHHHHh
Q 003348 726 KAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQ 788 (828)
Q Consensus 726 ~Al~~LanLa~-~~e~r~~i~~~g~I~~Lv~lL--~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~ 788 (828)
+...++++||. +++.+..+.+.||++.++.-. ...+|-.++..+.++.+|..++.+.++.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 46778999998 889999999999999887754 4578999999999999999998877777654
No 465
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=21 Score=37.62 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=54.4
Q ss_pred CCCCCCCcccccCccccccCCeecCCCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCcHHHHHH
Q 003348 232 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 298 (828)
Q Consensus 232 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~ 298 (828)
..+.+|..|.|.|. .+|+.=.+.|+|-+|.+.-+.-|++.. ...|+|..+..-.+|+||...+..
T Consensus 18 nk~f~~k~y~~ai~-~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 18 NKCFIPKRYDDAID-CYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred ccccchhhhchHHH-HHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHH
Confidence 45679999999999 999998889999999999999999965 447888777777899999766543
No 466
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.22 E-value=36 Score=39.41 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=43.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 003348 672 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 736 (828)
Q Consensus 672 Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~-~G~V~~Ll~LL-~~~~~v~~~Al~~LanLa~ 736 (828)
+-.+....+++++..|..++.|++.+.+|+.+.+- ...-..+++++ -+..++-+.+..+|+.+..
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33344566899999999999999999988886654 44555566666 3444444555555555443
No 467
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.17 E-value=93 Score=30.52 Aligned_cols=33 Identities=27% Similarity=0.691 Sum_probs=21.4
Q ss_pred CCCcchhHHHHHHHHhc----------CCCCCCCCCCc-CCCCCCCCcH
Q 003348 256 ASGQTYERAFIKKWIDL----------GLFVCPKTRQT-LAHTTLIPNY 293 (828)
Q Consensus 256 ~~G~ty~r~~I~~~~~~----------~~~~cP~t~~~-l~~~~l~pN~ 293 (828)
.+||.||= ||.+ |.-+||+||.. +......|+.
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAV 52 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCee
Confidence 36899873 6653 55679999976 4444455653
No 468
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.14 E-value=6.9e+02 Score=26.86 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHcCCHH-HHHHhhcCC--CHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC--CCHHHHHHHHHHHHH
Q 003348 619 KSAIANANAIE-PLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN--GTPRGKKDAATALFN 693 (828)
Q Consensus 619 k~~I~~~g~l~-~Lv~lL~s~--~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s--~~~~~~~~Al~aL~n 693 (828)
+..+.+.+.+. -|+.+|.+. +..+...++..|.+|+.- ..+- ... .+...+........+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P--------------~~~~-~~~~~~~~~~~~~~~~l~~~ 97 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWP--------------IELL-VESQPKDKNQRRNIPELLKY 97 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCC--------------HHHh-ccCCCCChHHHHHHHHHHHH
Confidence 44455556666 466666543 356666777777776532 1110 100 011222222222222
Q ss_pred chhcchhHHHHHHhCcHHHHHHhc----C--------CChHHHHHHHHHHHHHhCCch
Q 003348 694 LSIYHENKARIVQAGAVKHLVDLM----D--------PAAGMVDKAVAVLANLATIPD 739 (828)
Q Consensus 694 Ls~~~~n~~~iv~~G~V~~Ll~LL----~--------~~~~v~~~Al~~LanLa~~~e 739 (828)
+. ..|..+.+.+++.+++.++ . .+..+.+.++..+.|+...++
T Consensus 98 l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 98 LQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPD 152 (266)
T ss_pred HH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 22 2344566677777776654 1 123577889999999887543
No 469
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=45 Score=37.27 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCcccccCccccccCCe----ecCCCcchhHHHHHHH-HhcCCCCCCCCCCcCCCCCC
Q 003348 237 PSDFCCPLSLELMTDPV----IVASGQTYERAFIKKW-IDLGLFVCPKTRQTLAHTTL 289 (828)
Q Consensus 237 p~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~-~~~~~~~cP~t~~~l~~~~l 289 (828)
-.+|+||+...+|++=- +-.+|..||-.+|++- +...+-.+-+|..|++..++
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~Di 156 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADI 156 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhce
Confidence 46899999999998753 2368999999999874 22222234444444444433
No 470
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=20.78 E-value=93 Score=31.18 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHhcCCCCCCCCCCcCCCC-CCCC
Q 003348 269 WIDLGLFVCPKTRQTLAHT-TLIP 291 (828)
Q Consensus 269 ~~~~~~~~cP~t~~~l~~~-~l~p 291 (828)
-...|...||.|++|+... ++.|
T Consensus 151 VVaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 151 VVAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HHhCCCCCCCCCCCCCCCCCccCC
Confidence 4456888899999999854 5544
No 471
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.73 E-value=75 Score=34.65 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=37.8
Q ss_pred CCCCc-ccccCccccccC----CeecCCCc-----chhHHHHHHHHhc-CCCCCCCCCCcCCCC
Q 003348 235 PIPSD-FCCPLSLELMTD----PVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAHT 287 (828)
Q Consensus 235 ~~p~~-f~CpI~~~lm~d----PV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~~ 287 (828)
..|.+ ..|=||...+.. |.+.||.. ..-|.|+++|+.. +..+|..|.......
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 34555 889999986543 67777632 2569999999984 456799998765543
No 472
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.72 E-value=43 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.4
Q ss_pred cCCCcchhHHHHHHHHhcCCCCCCCCCCc
Q 003348 255 VASGQTYERAFIKKWIDLGLFVCPKTRQT 283 (828)
Q Consensus 255 ~~~G~ty~r~~I~~~~~~~~~~cP~t~~~ 283 (828)
+.||++|+-...+ +..| ||.||-.
T Consensus 5 t~Cg~~f~dgs~e--il~G---CP~CGg~ 28 (131)
T PF09845_consen 5 TKCGRVFEDGSKE--ILSG---CPECGGN 28 (131)
T ss_pred CcCCCCcCCCcHH--HHcc---CcccCCc
Confidence 5699999876654 4444 9999853
No 473
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.63 E-value=4.5e+02 Score=29.22 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHchhcchhHHHHHHhC--cHHHHHHhcCC----ChHHHHHHHHHHHHHhCCchhHHHHHh-------CCc
Q 003348 683 GKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLMDP----AAGMVDKAVAVLANLATIPDGRVAIGQ-------ENG 749 (828)
Q Consensus 683 ~~~~Al~aL~nLs~~~~n~~~iv~~G--~V~~Ll~LL~~----~~~v~~~Al~~LanLa~~~e~r~~i~~-------~g~ 749 (828)
++..|+.+|..+........++...+ .+..|+++++. ...++..|+.+|..|+........|+. .|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44556666666666777778888776 99999999943 256778899999999885544444432 345
Q ss_pred HHHHHH
Q 003348 750 IPVLVE 755 (828)
Q Consensus 750 I~~Lv~ 755 (828)
+..++.
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555544
No 474
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.48 E-value=77 Score=36.87 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=76.2
Q ss_pred HHHHHHhccCcchHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHHchhcchhHHHHHHhCcHHHHHH-hc-CCChHH
Q 003348 647 AATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LM-DPAAGM 723 (828)
Q Consensus 647 a~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~s~~~~~~~~Al~aL~nLs~~~~n~~~iv~~G~V~~Ll~-LL-~~~~~v 723 (828)
+.++...+.++.++..++.. .+|-.+.....+. ..+...++.++..++.....- ..++. .| .+...+
T Consensus 226 ~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~~~~~t---------~ql~k~~l~~pTe~v 295 (763)
T KOG4231|consen 226 ASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLARDVGVT---------MQLMKCDLMKPTETV 295 (763)
T ss_pred HHHHHHHhhCcccceeecccchhhhhhccccccc-chhhcccccccccHHHHHHHH---------HHHHHHHhcCcchhh
Confidence 45555666777788777765 4566665555443 444444444444433322111 11222 11 222211
Q ss_pred HH----HHHHHHHHHhCCchhHHHHHhCC---cH-HHHHHHHccCCHHHHHHHHHHHHHHhhCCHHhHHHHHhCCCHHHH
Q 003348 724 VD----KAVAVLANLATIPDGRVAIGQEN---GI-PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 795 (828)
Q Consensus 724 ~~----~Al~~LanLa~~~e~r~~i~~~g---~I-~~Lv~lL~s~s~~~ke~Av~~L~~L~~~~~~~~~~v~~~g~v~~L 795 (828)
.. ....++-.+...+..+....++. .+ ..+-.+....+++.+++|..++.+++......+..+-....-..+
T Consensus 296 ~~l~~~~I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~ 375 (763)
T KOG4231|consen 296 LKLSSPDIISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELL 375 (763)
T ss_pred hhhccccHhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHH
Confidence 11 11222222222222222222221 22 233334456789999999999999987754333333334444556
Q ss_pred HHhhcCCCHHHHHHHHHHHH
Q 003348 796 VALSQSGTPRAKEKAQALLS 815 (828)
Q Consensus 796 ~~LL~~g~~r~r~kA~~lL~ 815 (828)
++++....+++-+.|..+++
T Consensus 376 ~~~i~~~~~~~~~~~~~a~~ 395 (763)
T KOG4231|consen 376 MRLIVTPEPRVNKAAARALA 395 (763)
T ss_pred HHHhcccccccchhhhHHHH
Confidence 66666665554444444443
No 475
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=2.3e+02 Score=37.15 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=90.9
Q ss_pred CCHHHHHHhhc--CCCHHHHHHHHHHHHHhccCcchHHHHHhhCChHHHHHhhcC----C---CHHHHHHHHHHHHHchh
Q 003348 626 NAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----G---TPRGKKDAATALFNLSI 696 (828)
Q Consensus 626 g~l~~Lv~lL~--s~~~e~~~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~s----~---~~~~~~~Al~aL~nLs~ 696 (828)
|.+-+...+.. ....+++.....+|+++-..+..... .| ++.+.++|++ + ...+.+.+-.+|.-++.
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 44444444333 34567788888888887654332211 12 4555555442 2 12333444444444443
Q ss_pred cch-hHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh-HHHHHhCCcHHHHHHHHcc--CCHHHHHHHHH
Q 003348 697 YHE-NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVEL--GSARGKENAAA 770 (828)
Q Consensus 697 ~~~-n~~~iv~~G~V~~Ll~LL--~~~~~v~~~Al~~LanLa~~~e~-r~~i~~~g~I~~Lv~lL~s--~s~~~ke~Av~ 770 (828)
+.= .-..=.-.++|..++... ..+..+---|++.++++...-.. +....+.+--...++.+.+ .+..+-.+++|
T Consensus 916 DfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lw 995 (1610)
T KOG1848|consen 916 DFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLW 995 (1610)
T ss_pred cchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHH
Confidence 211 000112245555555555 24455666788888988874443 3333333333444444433 56667777887
Q ss_pred HHHHHhhCC--HHhHHHHHhCCCHHHHHHhhcCCCHHHH
Q 003348 771 ALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAK 807 (828)
Q Consensus 771 ~L~~L~~~~--~~~~~~v~~~g~v~~L~~LL~~g~~r~r 807 (828)
+++-.+-.+ .+. ..-++.|+++.|.+++.+......
T Consensus 996 i~ll~~L~~~~~ds-r~eVRngAvqtlfri~~Shg~~l~ 1033 (1610)
T KOG1848|consen 996 IMLLVHLADLCEDS-RAEVRNGAVQTLFRIFNSHGSKLG 1033 (1610)
T ss_pred HHHHHHHHHHhccc-hHHHhhhHHHHHHHHHhhhcccCC
Confidence 764433211 111 233467889999998887754433
No 476
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.29 E-value=90 Score=33.97 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCcccccCccccc--------------cCCe-----ecCCCcchhHHHHHHHHhc----C----CCCCCCCCCcCCCC
Q 003348 237 PSDFCCPLSLELM--------------TDPV-----IVASGQTYERAFIKKWIDL----G----LFVCPKTRQTLAHT 287 (828)
Q Consensus 237 p~~f~CpI~~~lm--------------~dPV-----~~~~G~ty~r~~I~~~~~~----~----~~~cP~t~~~l~~~ 287 (828)
+.+-.||+|+.+= -|+= ..||||........-|-+- | +..||+|.+.|...
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 5577899998752 1221 2589998777776666542 2 23599999888654
No 477
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.10 E-value=88 Score=34.87 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=51.6
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhcC-CccHHHHHH
Q 003348 563 ATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSIN-DNNKSAIAN 624 (828)
Q Consensus 563 Al~~L~~La~~s~~nr~~i~~~GaI~~Lv~lL--~s~d~~v~e~A~~aL~nLs~~-~~~k~~I~~ 624 (828)
..+.|..|++..++++..+.+.|+++.+++-. +..+|-+.+..+.++.+|..+ .+|+..|..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56688899999999999999999999988754 456899999999999999765 567777654
Done!