BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003349
(828 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 333 bits (853), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/286 (55%), Positives = 208/286 (72%), Gaps = 1/286 (0%)
Query: 247 KMQSAGMPSNIWKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEIDLDLKA 306
K++ AGMP ++ + KEL R +K+ + R Y++ + LPW +++ LDLK
Sbjct: 16 KIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDD-KLDLKE 74
Query: 307 AKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGR 366
A LD +H+GL +VK+RI+EYLAV+KL +GP+LC GPPGVGKTSLA SIA +LGR
Sbjct: 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134
Query: 367 KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGD 426
KF+RISLGGV+DE++IRGHRRTY+G+MPGR+I G+K+ G NPV LLDEIDK SD RGD
Sbjct: 135 KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGD 194
Query: 427 PASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYT 486
P+SA+LEVLDPEQN +F+DHY+ FDLSKV+F+ATAN IP PL DRME+I + GYT
Sbjct: 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254
Query: 487 PEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532
EKL I HL+P+ + +HGL LQ+ + + +I+ YTREAG
Sbjct: 255 EIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 135/213 (63%), Gaps = 9/213 (4%)
Query: 608 LVVDEAMLEKVLGPP--RFDDREAAERVAAPGISVGLVWTNFGGEVQFVEATAMRGKGEL 665
+ V E L+ +G R+ E ++V G+ GL +T GG+ +E + GKG+L
Sbjct: 327 ITVTEKNLQDFIGKRIFRYGQAETEDQV---GVVTGLAYTTVGGDTLSIEVSLSPGKGKL 383
Query: 666 HLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSA 725
LTG+LGDV++ESAQ A ++VR++ +L + + + DIHIH P GAVPKDGP+A
Sbjct: 384 ILTGKLGDVMRESAQAAFSYVRSKTEELGIEP----DFHEKYDIHIHVPEGAVPKDGPAA 439
Query: 726 GVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERN 785
G+T+ TALVS + + V + MTGE+TLRG VLP+GG+K+K L AHR G+ +I P+ N
Sbjct: 440 GITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDN 499
Query: 786 LKDLVEVPAAVLASLEIILAKRMEDVLEQAFEG 818
KD+ ++P +V L ILA +++VLE A G
Sbjct: 500 EKDIEDIPESVREGLTFILASHLDEVLEHALVG 532
>pdb|1RR9|A Chain A, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|B Chain B, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|C Chain C, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|D Chain D, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|E Chain E, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|F Chain F, Catalytic Domain Of E.Coli Lon Protease
Length = 200
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 125/183 (68%), Gaps = 8/183 (4%)
Query: 637 GISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLV 696
G GL WT GG++ +E + GKG+L TG LG+V++ES Q ALT VRARA L
Sbjct: 12 GQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKL--- 68
Query: 697 AEDGMN--LLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTL 754
G+N + RDIH+H P GA PKDGP+AG+ + TALVS + VRAD AMTGE+TL
Sbjct: 69 ---GINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITL 125
Query: 755 RGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQ 814
RG VLP+GG+K+K+LAAHR GIK V++P N +DL E+P V+A L+I KR+E+VL
Sbjct: 126 RGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTL 185
Query: 815 AFE 817
A +
Sbjct: 186 ALQ 188
>pdb|1RRE|A Chain A, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|B Chain B, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|C Chain C, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|D Chain D, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|E Chain E, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|F Chain F, Crystal Structure Of E.Coli Lon Proteolytic Domain
Length = 200
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 122/183 (66%), Gaps = 8/183 (4%)
Query: 637 GISVGLVWTNFGGEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLV 696
G GL WT GG++ +E + GKG+L TG LG+V +ES Q ALT VRARA L
Sbjct: 12 GQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVXQESIQAALTVVRARAEKL--- 68
Query: 697 AEDGMN--LLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTL 754
G+N + RDIH+H P GA PKDGP+AG+ TALVS + VRAD A TGE+TL
Sbjct: 69 ---GINPDFYEKRDIHVHVPEGATPKDGPAAGIAXCTALVSCLTGNPVRADVAXTGEITL 125
Query: 755 RGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQ 814
RG VLP+GG+K+K+LAAHR GIK V++P N +DL E+P V+A L+I KR+E+VL
Sbjct: 126 RGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTL 185
Query: 815 AFE 817
A +
Sbjct: 186 ALQ 188
>pdb|2X36|A Chain A, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|B Chain B, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|D Chain D, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|E Chain E, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|F Chain F, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|C Chain C, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
Length = 207
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 115/193 (59%), Gaps = 13/193 (6%)
Query: 633 VAAPGISVGLVWTNFGGEVQFVEATAMRGK---------GELHLTGQLGDVIKESAQIAL 683
V PG+ +GL WT GG FVE + R + G L +TGQLG+V+KESA+IA
Sbjct: 7 VTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAY 66
Query: 684 TWVRARATDLQLVAEDGMNLLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVR 743
T+ RA + + L IH+H P GA PKDGPSAG T+VTAL+SL + VR
Sbjct: 67 TFARA----FLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVR 122
Query: 744 ADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEII 803
+ AMTGE++L G +LPVGG+K+K +AA R G+ ++LP N KD ++ A + LE+
Sbjct: 123 QNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVH 182
Query: 804 LAKRMEDVLEQAF 816
+ ++ + AF
Sbjct: 183 FVEHYREIFDIAF 195
>pdb|1XHK|A Chain A, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
pdb|1XHK|B Chain B, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
Length = 187
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 666 HLTGQLGDVIKESAQIALTWVRARATDLQLVAEDGMNL------LQGRDIHIHFPAGAVP 719
HL GD+ K S +A A +LVAE + L L ++I+I F
Sbjct: 39 HLLNISGDIAKHSITLA------SALSKKLVAEKKLPLPKKDIDLNNKEIYIQFSQSYSK 92
Query: 720 KDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRV 779
DG SA + A++S ++ D A+TG + L G VL +GGV +KI AA RYG KRV
Sbjct: 93 IDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRV 152
Query: 780 ILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817
I+PE N D++E +EII K +++++ F+
Sbjct: 153 IIPEANXIDVIETEG-----IEIIPVKTLDEIVPLVFD 185
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 654 VEATAMRGKGELHLTGQLGDVIKESAQ-IALTWVRARATDLQLVAEDGMNLLQGRDIHIH 712
V A + +G++ +TG+LG++ KE+ Q ++ R + D+ DIH+
Sbjct: 426 VAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYKGEDISRY-----------DIHVQ 474
Query: 713 FPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAH 772
F +G +A +++ TA++S +R D AMTG +++RG VLP+GG I AA
Sbjct: 475 FLQTYEGVEGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEAAI 534
Query: 773 RYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 817
GIK VI+P+ N KD+ + ++I + +++VLE A E
Sbjct: 535 EAGIKMVIIPKSNEKDVF-LSKDKAEKIQIFPVETIDEVLEIALE 578
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 704 LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGG 763
+ D+HI F +G SA +++ TA++S V AMTG ++++G VLPVGG
Sbjct: 75 ISNMDVHIQFVGTYEGVEGASASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGG 134
Query: 764 VKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819
V KI AA + G+K+VI+P+ N+ D++ + A +E+I R+ +VLE E G
Sbjct: 135 VTQKIEAAIQAGLKKVIIPKDNIDDVL-LDAEHEGKIEVIPVSRINEVLEHVLEDG 189
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 704 LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGG 763
+ D+HI F +G SA +++ TA++S V AMTG ++++G VLPVGG
Sbjct: 75 ISNMDVHIQFVGTYEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGG 134
Query: 764 VKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819
V KI AA + G+K+VI+P+ N+ D++ + A +E+I R+ +VLE E G
Sbjct: 135 VTQKIEAAIQAGLKKVIIPKDNIDDVL-LDAEHEGKIEVIPVSRINEVLEHVLEDG 189
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 704 LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGG 763
+ D+HI F +G SA +++ TA++S V AMTG ++++G VLPVGG
Sbjct: 73 ISNMDVHIQFVGTYEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGG 132
Query: 764 VKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819
V KI AA + G+K+VI+P+ N+ D++ + A +E+I R+ +VLE E G
Sbjct: 133 VTQKIEAAIQAGLKKVIIPKDNIDDVL-LDAEHEGKIEVIPVSRINEVLEHVLEDG 187
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 704 LQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGG 763
+ D+HI F G SA +++ TA++S V AMTG ++++G VLPVGG
Sbjct: 75 ISNMDVHIQFVGTYEGVAGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGG 134
Query: 764 VKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 819
V KI AA + G+K+VI+P+ N+ D++ + A +E+I R+ +VLE E G
Sbjct: 135 VTQKIEAAIQAGLKKVIIPKDNIDDVL-LDAEHEGKIEVIPVSRINEVLEHVLEDG 189
>pdb|1X37|A Chain A, Structure Of Bacillus Subtilis Lon Protease Ssd Domain
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 482 LPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532
+ GYT EKL I HL+P+ + +HGL LQ+ + + +I+ YTREAG
Sbjct: 1 MAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 51
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 33/202 (16%)
Query: 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS 362
DL + LD ++ G R+KQ++ YL K + + +L F GPPG+GKT+LA IA
Sbjct: 3 DLALRPKTLD-EYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 363 ALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 422
LG +R++ G ++ PG L L ++ +DEI +
Sbjct: 61 ELGVN-LRVTSGPAIEK--------------PGDLAAILANSLEEGDILFIDEIHRLSRQ 105
Query: 423 VRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRAQPIPPPLLD 475
E L P D + + +L + + R I PLL
Sbjct: 106 AE--------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157
Query: 476 RMEVIE-LPGYTPEEKLRIAMR 496
R ++E L YTPEE + MR
Sbjct: 158 RFGIVEHLEYYTPEELAQGVMR 179
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 33/202 (16%)
Query: 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS 362
DL + LD ++ G R+KQ++ YL K + + +L F GPPG+GKT+LA IA
Sbjct: 3 DLALRPKTLD-EYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 363 ALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 422
LG +R++ G ++ PG L L ++ +DEI +
Sbjct: 61 ELGVN-LRVTSGPAIEK--------------PGDLAAILANSLEEGDILFIDEIHRLSRQ 105
Query: 423 VRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRAQPIPPPLLD 475
E L P D + + +L + + R I PLL
Sbjct: 106 AE--------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157
Query: 476 RMEVIE-LPGYTPEEKLRIAMR 496
R ++E L YTPEE + MR
Sbjct: 158 RFGIVEHLEYYTPEELAQGVMR 179
>pdb|1QZM|A Chain A, Alpha-Domain Of Atpase
Length = 94
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 484 GYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAG 532
GYT +EKL IA RHL+P+ ++++ L L + ++ + +I+ YTREAG
Sbjct: 2 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 50
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 33/202 (16%)
Query: 303 DLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAS 362
DL + LD ++ G R+KQ++ YL K + + +L F GPPG+GKT+LA IA
Sbjct: 3 DLALRPKTLD-EYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 363 ALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSD 422
LG +R++ G ++ PG L L ++ +DEI +
Sbjct: 61 ELGVN-LRVTSGPAIEK--------------PGDLAAILANSLEEGDILFIDEIHRLSRQ 105
Query: 423 VRGDPASALLEVLDPEQNKTFNDHYL-------NVPFDLSKVIFVATANRAQPIPPPLLD 475
E L P D + + +L + + R I PLL
Sbjct: 106 AE--------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157
Query: 476 RMEVIE-LPGYTPEEKLRIAMR 496
R ++E L YTPEE + MR
Sbjct: 158 RFGIVEHLEYYTPEELAQGVMR 179
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
F GP GVGKT + ++ ALG + +R + + + IG+ PG + G
Sbjct: 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV----SRLIGAPPGYV--GFD 544
Query: 403 RVGVC--------NPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDL 454
+ G+ + V+LLDEI+K DV + LL+V+D N T D+ D
Sbjct: 545 QGGLLTDAVIKHPHAVLLLDEIEKAHPDV----FNILLQVMD---NGTLTDNN-GRKADF 596
Query: 455 SKVIFVATAN 464
V+ V T N
Sbjct: 597 RNVVLVMTTN 606
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 330 AVRKLKPDARGP-----VLCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEAD 381
A+R+ + + P F+GP GVGKT LA ++A+ L IRI + ++
Sbjct: 573 AIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632
Query: 382 IR---GHRRTYIGSMP-GRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 437
+ G Y+G G+L + ++R V+L DEI+K DV + LL++LD
Sbjct: 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYS--VILFDEIEKAHPDV----FNILLQILD- 685
Query: 438 EQNKTFNDHYLNVPFDLSKVIFVATANRAQPI 469
+ + H V D + + T+N P+
Sbjct: 686 -DGRLTDSHGRTV--DFRNTVIILTSNLGSPL 714
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
+ VGPPG GKT LA +IA F IS + ++G R+ D +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE---------MFVGVGASRVRDMFE 98
Query: 403 RVGVCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP-FDLSK-VIF 459
+ P ++ +DEID G RG A L E+ +T N + + F+ ++ +I
Sbjct: 99 QAKKAAPCIIFIDEIDAVGRQ-RG----AGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153
Query: 460 VATANRAQPIPPPLL-----DRMEVIELPGYTPEEK-LRIAMRHL 498
+A NR + P LL DR V+ LP E+ L++ MR +
Sbjct: 154 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 198
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 47/175 (26%)
Query: 343 LCFVGPPGVGKTSLASSIA--------SALGRKFIRISLGGVKDEADIRGHRRTYIGSMP 394
+ VGPPGVGKT LA ++A +A G F+ + +G +G+
Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG---------------VGAAR 111
Query: 395 GR-LIDGLKRVGVCNPVMLLDEID----KTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449
R L + KR C ++ +DEID K GS V G + E+ +T N +
Sbjct: 112 VRDLFETAKRHAPC--IVFIDEIDAVGRKRGSGVGGG---------NDEREQTLNQLLVE 160
Query: 450 VP-FDLSKVIFV-ATANRAQPIPPPLL-----DRMEVIELPGYTPEEK-LRIAMR 496
+ F+ I V A NR + P LL DR I+ P E+ LRI R
Sbjct: 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 343 LCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIR---GHRRTYIGSMP-G 395
F+GP GVGKT LA ++A+ L IRI + ++ + G Y+G G
Sbjct: 47 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG 106
Query: 396 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455
+L + ++R V+L D I+K DV + LL++LD + + H V D
Sbjct: 107 QLTEAVRRRPYS--VILFDAIEKAHPDV----FNILLQILD--DGRLTDSHGRTV--DFR 156
Query: 456 KVIFVATANRAQPI 469
+ + T+N P+
Sbjct: 157 NTVIILTSNLGSPL 170
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 47/175 (26%)
Query: 343 LCFVGPPGVGKTSLASSIA--------SALGRKFIRISLGGVKDEADIRGHRRTYIGSMP 394
+ VGPPGVGKT LA ++A +A G F+ + +G +G+
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG---------------VGAAR 120
Query: 395 GR-LIDGLKRVGVCNPVMLLDEID----KTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449
R L + KR C ++ +DEID K GS V G + E+ +T N +
Sbjct: 121 VRDLFETAKRHAPC--IVFIDEIDAVGRKRGSGVGGG---------NDEREQTLNQLLVE 169
Query: 450 VP-FDLSKVIFV-ATANRAQPIPPPLL-----DRMEVIELPGYTPEEK-LRIAMR 496
+ F+ I V A NR + P LL DR I+ P E+ LRI R
Sbjct: 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 314 DHYGLVRVKQRIIEYLAVRKLKPDA----RGP---VLCFVGPPGVGKTSLASSIASALGR 366
D G+ K I E + L+PD RGP +L F GPPG GKT + IAS G
Sbjct: 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLF-GPPGTGKTLIGKCIASQSGA 143
Query: 367 KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN--PVMLLDEIDKTGSDVR 424
F IS + + G +++ L V C V+ +DEID S R
Sbjct: 144 TFFSISASSLTSKWVGEGE----------KMVRALFAVARCQQPAVIFIDEIDSLLSQ-R 192
Query: 425 GD 426
GD
Sbjct: 193 GD 194
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 38/158 (24%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGL- 401
+ GPPG GKT LA ++A+ +G FI G+ D+ YIG R+I +
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK---------YIGE-SARIIREMF 267
Query: 402 ---KRVGVCNPVMLLDEIDKTGSDVRGDPASA-------LLEVLDPEQNKTFNDHYLNVP 451
K C ++ +DE+D G + SA L+E+L T D + N
Sbjct: 268 AYAKEHEPC--IIFMDEVDAIGGRRFSEGTSADREIQRTLMELL------TQMDGFDN-- 317
Query: 452 FDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPG 484
L + + NR + P L LDR I LP
Sbjct: 318 --LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 47/175 (26%)
Query: 343 LCFVGPPGVGKTSLASSIA--------SALGRKFIRISLGGVKDEADIRGHRRTYIGSMP 394
+ VGPPGVGKT LA ++A +A G F+ + +G +G+
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG---------------VGAAR 120
Query: 395 GR-LIDGLKRVGVCNPVMLLDEID----KTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449
R L + KR C ++ +DEID K GS V G + E+ +T N +
Sbjct: 121 VRDLFETAKRHAPC--IVFIDEIDAVGRKRGSGVGGG---------NDEREQTLNQLLVE 169
Query: 450 VP-FDLSKVIFV-ATANRAQPIPPPLL-----DRMEVIELPGYTPEEK-LRIAMR 496
+ F+ I V A NR + P LL DR I+ P E+ LRI R
Sbjct: 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 343 LCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIR---GHRRTYIGSMP-G 395
F+GP GVGKT LA ++A+ L IRI ++ + G Y+G G
Sbjct: 50 FLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGG 109
Query: 396 RLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLS 455
+L + ++R V+L D I+K DV + LL+ LD + + H V D
Sbjct: 110 QLTEAVRRRPYS--VILFDAIEKAHPDV----FNILLQXLD--DGRLTDSHGRTV--DFR 159
Query: 456 KVIFVATANRAQPI 469
+ + T+N P+
Sbjct: 160 NTVIIXTSNLGSPL 173
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 47/175 (26%)
Query: 343 LCFVGPPGVGKTSLASSIA--------SALGRKFIRISLGGVKDEADIRGHRRTYIGSMP 394
+ VGPPGVGKT LA ++A +A G F+ + +G +G+
Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG---------------VGAAR 96
Query: 395 GR-LIDGLKRVGVCNPVMLLDEID----KTGSDVRGDPASALLEVLDPEQNKTFNDHYLN 449
R L + KR C ++ +DEID K GS V G + E+ +T N +
Sbjct: 97 VRDLFETAKRHAPC--IVFIDEIDAVGRKRGSGVGGG---------NDEREQTLNQLLVE 145
Query: 450 VP-FDLSKVIFV-ATANRAQPIPPPLL-----DRMEVIELPGYTPEEK-LRIAMR 496
+ F+ I V A NR + P LL DR I+ P E+ LRI R
Sbjct: 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
+ VGPPG GKT LA ++A F IS + ++G R+ D
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE---------LFVGVGAARVRDLFA 102
Query: 403 RVGVCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP-FDLSK-VIF 459
+ P ++ +DEID G RG A L E+ +T N + + FD + +I
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRH-RG----AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157
Query: 460 VATANRAQPIPPPLL 474
+A NR + P LL
Sbjct: 158 MAATNRPDILDPALL 172
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 33/143 (23%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
+ GPPG GKT L ++A++ FIR++ H+ Y+G P R++ +
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV-------HK--YLGEGP-RMVRDVF 258
Query: 403 RVGVCN--PVMLLDEID---------KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451
R+ N ++ +DE+D +TGSD + L+E+L Q F D NV
Sbjct: 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSD--REVQRILIELL--TQMDGF-DQSTNV- 312
Query: 452 FDLSKVIFVATANRAQPIPPPLL 474
KVI NRA + P LL
Sbjct: 313 ----KVIM--ATNRADTLDPALL 329
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 41/178 (23%)
Query: 345 FVGPPGVGKTSLASSIAS--------ALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGR 396
+GPPG GKT LA ++A+ G +F+ + +GG+ A +R + P
Sbjct: 44 LLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGGL-GAARVRSLFKEARARAP-- 99
Query: 397 LIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFD--- 453
C ++ +DEID G ++ + + E+ +T N L V D
Sbjct: 100 ----------C--IVYIDEIDAVGK----KRSTTMSGFSNTEEEQTLNQ--LLVEMDGMG 141
Query: 454 -LSKVIFVATANRAQPIP-----PPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQ 505
VI +A+ NRA + P LDR I+LP T +E+ I +HL L Q
Sbjct: 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP--TLQERREIFEQHLKSLKLTQ 197
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 345 FVGPPGVGKTSLASSIASALGRKFIRI------SLGGVKDEADIRGHRRTYIGSMPGRLI 398
F GPPG GKT LA +IA+ FI I ++ + EA++R +
Sbjct: 54 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR------------EIF 101
Query: 399 DGLKRVGVCNPVMLLDEID 417
D ++ C V+ DE+D
Sbjct: 102 DKARQAAPC--VLFFDELD 118
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 345 FVGPPGVGKTSLASSIASALGRKFIRI------SLGGVKDEADIRGHRRTYIGSMPGRLI 398
F GPPG GKT LA +IA+ FI I ++ + EA++R +
Sbjct: 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR------------EIF 563
Query: 399 DGLKRVGVCNPVMLLDEID 417
D ++ C V+ DE+D
Sbjct: 564 DKARQAAPC--VLFFDELD 580
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPG 395
+ GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA 299
Query: 396 RLIDGLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYL 448
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 --------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR------- 338
Query: 449 NVPFDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 ------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 38/161 (23%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
+ VGPPG GKT LA ++A F S+GG ++G R+ D +
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPF--FSMGG-------SSFIEMFVGLGASRVRDLFE 97
Query: 403 RVGVCNP-VMLLDEIDK-----------TGSDVRGDPASALLEVLDPEQNKTFNDHYLNV 450
P ++ +DEID +G+D R + LL +D F N
Sbjct: 98 TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD-----GFGSE--NA 150
Query: 451 PFDLSKVIFVATANRAQPIPPPLL-----DRMEVIELPGYT 486
P VI +A NR + + P L+ DR +++ P +
Sbjct: 151 P-----VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 345 FVGPPGVGKTSLASSIASALGRKFIRI------SLGGVKDEADIRGHRRTYIGSMPGRLI 398
F GPPG GKT LA +IA+ FI I ++ + EA++R +
Sbjct: 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR------------EIF 563
Query: 399 DGLKRVGVCNPVMLLDEID 417
D ++ C V+ DE+D
Sbjct: 564 DKARQAAPC--VLFFDELD 580
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 47/159 (29%)
Query: 347 GPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPGRLID 399
GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA---- 299
Query: 400 GLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPF 452
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 ----------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR----------- 338
Query: 453 DLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 --AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLK 402
+ VGPPG G T LA ++A F IS + ++G R+ D
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVE---------LFVGVGAARVRDLFA 102
Query: 403 RVGVCNP-VMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP-FDLSK-VIF 459
+ P ++ +DEID G RG A L E+ +T N + + FD + +I
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRH-RG----AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157
Query: 460 VATANRAQPIPPPLL 474
+A NR + P LL
Sbjct: 158 MAATNRPDILDPALL 172
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 337 DARGPV--LCFVGPPGVGKTSLASSIASAL---GRKFIRISLGGVKDEADIRGHRRTYIG 391
D + P+ F+GP GVGKT LA ++A ++ IRI + ++ G
Sbjct: 516 DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSG------- 568
Query: 392 SMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP 451
G+L + ++R V+LLD I+K DV + LL+VL E + + V
Sbjct: 569 ---GQLTEKVRRKPYS--VVLLDAIEKAHPDV----FNILLQVL--EDGRLTDSKGRTVD 617
Query: 452 FDLSKVIFVATAN 464
F I + T+N
Sbjct: 618 F--RNTILIMTSN 628
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 323 QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL 364
QR+IE L+ R PVL +G PGVGKT++A +A +
Sbjct: 190 QRVIEVLSRRT----KNNPVL--IGEPGVGKTAIAEGLAQQI 225
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 342 VLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRG 384
+L F+GPPG GK + A +A G F+ IS G + EA +G
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKG 42
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 325 IIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK 367
I+E + +K+ G + GPPG GKT+LA +IA LG K
Sbjct: 52 IVELIKSKKMA----GRAVLLAGPPGTGKTALALAIAQELGSK 90
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS 372
+ GPPG GKT LA ++A KFIR+S
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVS 214
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 309 ERLDSDHYGLVRVKQRIIEYLAV-------RKLKPDARGPVL--CFVGPPGVGKTSLASS 359
E LD + GL VK RI E A+ +KL P L F G PG GKT++A
Sbjct: 27 EELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALK 86
Query: 360 IASALGR-KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI-- 416
+A L R ++R D+ G YIG + + LKR V+ +DE
Sbjct: 87 MAGLLHRLGYVRKGHLVSVTRDDLVGQ---YIGHTAPKTKEVLKR--AMGGVLFIDEAYY 141
Query: 417 ---DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI---P 470
D + LL+V+ E N+ D VI A+R +
Sbjct: 142 LYRPDNERDYGQEAIEILLQVM--ENNR-----------DDLVVILAGYADRMENFFQSN 188
Query: 471 PPLLDRM-EVIELPGYTPEEKLRIA 494
P R+ IE P Y+ EE IA
Sbjct: 189 PGFRSRIAHHIEFPDYSDEELFEIA 213
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 309 ERLDSDHYGLVRVKQRIIEYLAV-------RKLKPDARGPVL--CFVGPPGVGKTSLASS 359
E LD + GL VK RI E A+ +KL P L F G PG GKT++A
Sbjct: 20 EELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALK 79
Query: 360 IASALGR-KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEI-- 416
+A L R ++R D+ G YIG + + LKR V+ +DE
Sbjct: 80 MAGLLHRLGYVRKGHLVSVTRDDLVGQ---YIGHTAPKTKEVLKR--AMGGVLFIDEAYY 134
Query: 417 ---DKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPI---P 470
D + LL+V+ E N+ D VI A+R +
Sbjct: 135 LYRPDNERDYGQEAIEILLQVM--ENNR-----------DDLVVILAGYADRMENFFQSN 181
Query: 471 PPLLDRM-EVIELPGYTPEEKLRIA 494
P R+ IE P Y+ EE IA
Sbjct: 182 PGFRSRIAHHIEFPDYSDEELFEIA 206
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 330 AVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL-GRKFIRISL 373
VRK + + P L F GPPG GKTS ++A + G+ + + L
Sbjct: 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 24/96 (25%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRI------SLGGVKDEAD--IRGHRRTYIGSMP 394
+ +GP GVGKT +A +A FI++ +G V E D IR +
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD-----LTDSA 107
Query: 395 GRLIDGLKRVGVCNPVMLLDEIDK-------TGSDV 423
G ID +++ N ++ +DEIDK +G+DV
Sbjct: 108 GGAIDAVEQ----NGIVFIDEIDKICKKGEYSGADV 139
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 340 GPVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGV 376
G + F+GPPG GK + AS +A LG F ++S G +
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDI 38
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 321 VKQRIIEYLAVRKLKPD--------ARGPVLCFVGPPGVGKTSLASSIASALGRKFIRIS 372
KQ + E + + L+P+ ARG L GPPG GKT LA ++A+ F IS
Sbjct: 123 AKQALQEIVILPSLRPELFTGLRAPARG--LLLFGPPGNGKTMLAKAVAAESNATFFNIS 180
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRI 371
P + G PGVGKT+L +AS G K+I +
Sbjct: 5 PNILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 309 ERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL 364
+RLD D G + +R+ Y+ + P L F GPPGVGKT+ A ++A L
Sbjct: 22 QRLD-DIVGQEHIVKRLKHYVKTGSM------PHLLFAGPPGVGKTTAALALAREL 70
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRI 371
P + G PGVGKT+L +AS G K+I +
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRI 371
+ GPPG GKT LA ++A+ FIR+
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRV 82
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 313 SDHYGLVRVKQRIIEYLAVRKLKPDA----RGPV--LCFVGPPGVGKTSLASSIASALGR 366
+D G KQ + E + + ++P+ R P L GPPG GKT LA ++A+
Sbjct: 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA 80
Query: 367 KFIRIS 372
F+ IS
Sbjct: 81 TFLNIS 86
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 340 GPVLCFVGPPGVGKTSLASSIASALGRK 367
G + GPPG GKT+LA +IA LG K
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSK 104
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 341 PVLCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHR--RTYIGSMPGRLI 398
P + +GP GKT LA ++A AL + I + + DI + R + P RLI
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLI 65
Query: 399 D 399
D
Sbjct: 66 D 66
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 345 FVGPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRV 404
G PG GKT LA ++A+ F+RI V E + Y+G P K
Sbjct: 221 LYGAPGTGKTLLAKAVANQTSATFLRI----VGSEL-----IQKYLGDGPRLCRQIFKVA 271
Query: 405 GVCNP-VMLLDEIDKTGSDVRGDPASA--------LLEVLDPEQNKTFNDHYLNVPFDLS 455
G P ++ +DEID G+ R D S +LE+L+ Q F+D
Sbjct: 272 GENAPSIVFIDEIDAIGTK-RYDSNSGGEREIQRTMLELLN--QLDGFDDR--------G 320
Query: 456 KVIFVATANRAQPIPPPL-----LDRMEVIELPGYTPEEKL 491
V + N+ + + P L +DR + E P + ++K+
Sbjct: 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 564 KDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPR 623
K + +P+L + LA+G V++ + P+ + +S + RI S + E+
Sbjct: 94 KTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNL 153
Query: 624 FDDREAAERVAAPGISVG 641
D++E A GI++G
Sbjct: 154 LDNKEQAISAIKDGIAIG 171
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+GKT+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+GKT+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+GKT+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+GKT+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+GKT+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 32/176 (18%)
Query: 349 PGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCN 408
PG GKT++A ++ + + ++ K + +RG + + DG ++V
Sbjct: 57 PGTGKTTVAKALCHDVNADMMFVNGSDCKIDF-VRGPLTNFASAAS---FDGRQKV---- 108
Query: 409 PVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQP 468
+++DE D++G L E ++F + Y S + TAN
Sbjct: 109 --IVIDEFDRSG----------LAE--SQRHLRSFMEAYS------SNCSIIITANNIDG 148
Query: 469 IPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPR---VLDQHGLGSEFLQIPEAMVK 521
I PL R VI T E+K+ + M+ +I R + G+ +++ A+VK
Sbjct: 149 IIKPLQSRCRVITFGQPTDEDKIEM-MKQMIRRLTEICKHEGIAIADMKVVAALVK 203
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 564 KDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPR 623
K + +P+L + LA+G V++ + P+ + +S + RI S + E+
Sbjct: 94 KTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNL 153
Query: 624 FDDREAAERVAAPGISVG 641
D++E A GI++G
Sbjct: 154 LDNKEQAISAIKDGIAIG 171
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 345 FVGPPGVGKTSLASSIASALGRKFIRI 371
GPPG GKT LA ++A+ G FI +
Sbjct: 49 LAGPPGCGKTLLAKAVANESGLNFISV 75
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 323 QRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASAL 364
QR+IE L+ R PVL +G PGVGKT++A +A +
Sbjct: 190 QRVIEVLSRRT----KNNPVL--IGEPGVGKTAIAEGLAQQI 225
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 41/207 (19%)
Query: 309 ERLDSDHYGLVRVKQRIIEYLAV-------RKLKPDARGPVL--CFVGPPGVGKTSLASS 359
E LD + GL VK RI E A+ +KL P L F G PG GKT++A
Sbjct: 27 EELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHXSFTGNPGTGKTTVALK 86
Query: 360 IASALGR-KFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDK 418
A L R ++R D+ G YIG + + LKR V+ +DE
Sbjct: 87 XAGLLHRLGYVRKGHLVSVTRDDLVGQ---YIGHTAPKTKEVLKR--AXGGVLFIDEA-- 139
Query: 419 TGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSK-------VIFVATANRAQPI-- 469
+ P+ + + + + + + VI A+R +
Sbjct: 140 -------------YYLYRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFFQ 186
Query: 470 -PPPLLDRM-EVIELPGYTPEEKLRIA 494
P R+ IE P Y+ EE IA
Sbjct: 187 SNPGFRSRIAHHIEFPDYSDEELFEIA 213
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 649 GEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLV 696
G+ EA A R +G ++ G +G V+ + +AL VRARA L +
Sbjct: 151 GDRYLYEAVAERAEGPWNVNGNVGLVVGATDPVALARVRARAPTLWFL 198
>pdb|3QW3|A Chain A, Structure Of Leishmania Donovani Omp Decarboxylase
pdb|3QW3|B Chain B, Structure Of Leishmania Donovani Omp Decarboxylase
Length = 255
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 649 GEVQFVEATAMRGKGELHLTGQLGDVIKESAQIALTWVRARATDLQLV 696
G+ EA A R +G ++ G +G V+ + +AL VRARA L +
Sbjct: 150 GDRYLYEAVAERAEGPWNVNGNVGLVVGATDPVALARVRARAPTLWFL 197
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 259 KHVQKELRRLKKMQPQQ-PGYTSSRVYLELIADLPWEKASEEIDLDLKAAKERLDSDHYG 317
+ +Q+ELR ++ ++ GY S+ V E++A+L +SE DL A + +D+D G
Sbjct: 87 EQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSE----DLDAMIDEIDADGSG 142
Query: 318 LVRVKQ 323
V ++
Sbjct: 143 TVDFEE 148
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 347 GPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV 406
GPPG+GKT+ A +A LG + ++ +D+R +T + + +D + VG
Sbjct: 84 GPPGIGKTTAAHLVAQELGYDILE------QNASDVRS--KTLLNAGVKNALDNMSVVGY 135
Query: 407 C------------NPVMLLDEIDKTGSDVRG 425
+ V+++DE+D RG
Sbjct: 136 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG 166
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 329 LAVRKLKPDARGPVLCFV--GPPGVGKTSLASSIASALGRKFIRIS----LGGVKDEADI 382
L V++ K R P++ + GPP GKT+LA+ IA FI+I + G + A
Sbjct: 50 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 109
Query: 383 RGHRRTYIGSMPGRL----IDGLKRV 404
+ ++ + + +L +D ++R+
Sbjct: 110 QAMKKIFDDAYKSQLSCVVVDDIERL 135
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 339 RGPVLCFV---GPPGVGKTSLASSIASAL 364
RG VL V GPPG+G+T+LA IAS L
Sbjct: 47 RGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 347 GPPGVGKTSLASSIASALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGV 406
GPPG GKT LA + A+ F++++ + + YIG + D
Sbjct: 222 GPPGTGKTLLARACAAQTNATFLKLAAPQLV---------QMYIGEGAKLVRDAFALAKE 272
Query: 407 CNP-VMLLDEIDKTG-----SDVRGDP--ASALLEVLDPEQNKTFNDHYLNVPFDLSKVI 458
P ++ +DE+D G S+ GD +LE+L+ + +D +V
Sbjct: 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD----------RVK 322
Query: 459 FVATANRAQPIPPPL-----LDRMEVIELPGYTPEEKLRIAMRH 497
+A NR + P L LDR IE P + + + +I H
Sbjct: 323 VLAATNRVDVLDPALLRSGRLDRK--IEFPLPSEDSRAQILQIH 364
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 329 LAVRKLKPDARGPVLCFV--GPPGVGKTSLASSIASALGRKFIRIS 372
L V++ K R P++ + GPP GKT+LA+ IA FI+I
Sbjct: 51 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96
>pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
Length = 171
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 247 KMQSAGMPSNI------WKHVQKELRRLKKMQPQQPGYTSSRVYLELIADLPWEKASEEI 300
+++ A +P + WK +KE+ RLK V +L AD+ E+A EE
Sbjct: 24 RVEPAKLPKTVERFFEEWKDQRKEIERLKS------------VIADLWADILXERA-EEF 70
Query: 301 DLDLKAAKERLDSDHYGLVRVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSI 360
D K E +D+D L ++ +R+ E AV L G V G+ A +
Sbjct: 71 D-SXKVVAEVVDADXQALQKLAERLAEKGAVGCLXAKGEGKVFVVTFS---GQKYDAREL 126
Query: 361 ASALGRKFIRISLGGVKDEA 380
+GR + S GG KD A
Sbjct: 127 LREIGR-VAKGSGGGRKDVA 145
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 341 PVLCFVGPPGVGKTSLASSIASAL----------GRKFIRISLGGVKDEADIRGHRRTYI 390
PVL +G PGVGKT++ +A + GR+ + + +G + A RG +
Sbjct: 46 PVL--IGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE---FE 100
Query: 391 GSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDP 437
+ G L D K+ G N ++ +DE+ + D A +L P
Sbjct: 101 ERLKGVLNDLAKQEG--NVILFIDELHTMVGAGKADGAMDAGNMLKP 145
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 331 VRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK 367
V P+ G L FVG PGVGKT LA + A+ K
Sbjct: 30 VHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKAIYEK 65
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 331 VRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRK 367
V P+ G L FVG PGVGKT LA + A+ K
Sbjct: 30 VHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKAIYEK 65
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPG 395
+ GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA 299
Query: 396 RLIDGLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYL 448
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 --------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR------- 338
Query: 449 NVPFDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 ------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 341 PVLCFVGPPGVGKTSLASSIASAL 364
P L F GPPG GKT+ A ++A L
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDL 62
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPG 395
+ GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA 299
Query: 396 RLIDGLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYL 448
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 --------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR------- 338
Query: 449 NVPFDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 ------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPG 395
+ GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA 299
Query: 396 RLIDGLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYL 448
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 --------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR------- 338
Query: 449 NVPFDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 ------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRIS-------LGGVKDEADIRGHRRTYIGSMPG 395
+ GPPG GKT +A ++A+ G F I+ L G + E+++R + P
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPA 299
Query: 396 RLIDGLKRVGVCNPVMLLDEID-------KTGSDVRGDPASALLEVLDPEQNKTFNDHYL 448
++ +DE+D KT +V S LL ++D + +
Sbjct: 300 --------------IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR------- 338
Query: 449 NVPFDLSKVIFVATANRAQPIPPPL-----LDRMEVIELPGYT 486
+ VI +A NR I P L DR I +P T
Sbjct: 339 ------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRI 371
+ GPPG GKT A ++A+ FIR+
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRV 274
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 341 PVLCFVGPPGVGKTSLASSIASAL 364
P L F GPPG GKT+ A ++A L
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDL 62
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 347 GPPGVGKTSLASSIASALGRKFIRIS--LGGVKD 378
GPPG GKT+LA IA RIS GVK+
Sbjct: 57 GPPGTGKTTLAEVIARYANADVERISAVTSGVKE 90
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 343 LCFVGPPGVGKTSLASSIASALGRKFIRISLGGVKD 378
+ G PGVGKT+L I LG++ I V+D
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,046,906
Number of Sequences: 62578
Number of extensions: 872020
Number of successful extensions: 2529
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2447
Number of HSP's gapped (non-prelim): 104
length of query: 828
length of database: 14,973,337
effective HSP length: 107
effective length of query: 721
effective length of database: 8,277,491
effective search space: 5968071011
effective search space used: 5968071011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)